Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68753.t1 | XP_003604029.1 | 97.9 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 8.90E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68753.t1 | P45434 | 60.2 | 241 | 89 | 3 | 7 | 243 | 19 | 256 | 9.4e-74 | 278.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68753.t1 | B7FIS2 | 97.9 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 6.4e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene68753 | -0.843835 | 1.10E-58 | -1.69E-46 |
| MS.gene049153 | MS.gene68753 | -0.830715 | 2.51E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene68753 | -0.813529 | 2.44E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene68753 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene68753 | -0.80334 | 3.65E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene68753 | -0.813829 | 2.10E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene68753 | -0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene68753 | -0.823509 | 1.33E-53 | -1.69E-46 |
| MS.gene053555 | MS.gene68753 | -0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene68753 | -0.805967 | 1.03E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene68753 | -0.806277 | 8.89E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene68753 | -0.810648 | 1.04E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene68753 | -0.847446 | 1.15E-59 | -1.69E-46 |
| MS.gene054556 | MS.gene68753 | -0.802134 | 6.48E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene68753 | -0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene68753 | -0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene68753 | -0.812438 | 4.24E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene68753 | -0.831446 | 1.66E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene68753 | -0.805083 | 1.58E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene68753 | -0.857717 | 1.35E-62 | -1.69E-46 |
| MS.gene056902 | MS.gene68753 | -0.811493 | 6.81E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene68753 | -0.814859 | 1.24E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene68753 | -0.829242 | 5.75E-55 | -1.69E-46 |
| MS.gene058710 | MS.gene68753 | -0.803773 | 2.97E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene68753 | -0.827184 | 1.80E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene68753 | -0.831106 | 2.01E-55 | -1.69E-46 |
| MS.gene059876 | MS.gene68753 | -0.829204 | 5.87E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene68753 | 0.820506 | 6.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68753.t1 | MTR_3g117740 | 97.899 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 3.91e-172 | 474 |
| MS.gene68753.t1 | MTR_4g075340 | 74.459 | 231 | 54 | 3 | 6 | 235 | 21 | 247 | 1.02e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68753.t1 | AT2G16595 | 59.565 | 230 | 86 | 4 | 6 | 234 | 19 | 242 | 1.72e-89 | 265 |
| MS.gene68753.t1 | AT2G21160 | 60.251 | 239 | 88 | 3 | 9 | 243 | 21 | 256 | 2.23e-83 | 249 |
| MS.gene68753.t1 | AT2G21160 | 60.241 | 166 | 59 | 3 | 9 | 170 | 21 | 183 | 3.71e-65 | 201 |
Find 58 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATTTCGCAATATTCTT+AGG | 0.152346 | 3.2:-92930633 | None:intergenic |
| TTTGAATGTTGTTGCAATTA+AGG | 0.192749 | 3.2:+92930910 | MS.gene68753:CDS |
| TTGCTGACAGAAAATATATA+TGG | 0.249255 | 3.2:-92932168 | None:intergenic |
| CTACTTGGGCTATGGATTAA+TGG | 0.301378 | 3.2:+92932467 | MS.gene68753:CDS |
| TTCTGTCAGCAAGTTCTTGC+AGG | 0.320879 | 3.2:+92932179 | MS.gene68753:CDS |
| GTGCAATTCCAAGAGTAAAA+AGG | 0.335460 | 3.2:-92932436 | None:intergenic |
| ACAGCGATGGTGTCAATTCC+TGG | 0.351993 | 3.2:-92930606 | None:intergenic |
| TGTTCAAAACCTTACTGTTC+AGG | 0.353087 | 3.2:+92930967 | MS.gene68753:CDS |
| TACCAAAACACTTTCTATAA+TGG | 0.355170 | 3.2:+92932362 | MS.gene68753:CDS |
| TTCTTATCCTACTTGGGCTA+TGG | 0.361313 | 3.2:+92932459 | MS.gene68753:CDS |
| TGCCATTATAGAAAGTGTTT+TGG | 0.377178 | 3.2:-92932364 | None:intergenic |
| TCAAATACATAACCTGTCTA+AGG | 0.380877 | 3.2:+92932490 | MS.gene68753:CDS |
| AATTGCAACAACATTCAAAC+TGG | 0.382031 | 3.2:-92930906 | None:intergenic |
| CTCCGTGCCATCTTCAGTTC+AGG | 0.401803 | 3.2:+92932137 | MS.gene68753:CDS |
| ATTGCACTTCTTATCCTACT+TGG | 0.405932 | 3.2:+92932452 | MS.gene68753:CDS |
| TACATTTCGCAATATTCTTA+GGG | 0.406141 | 3.2:-92930632 | None:intergenic |
| TGTTCTTCTTGCTAGTTGCT+AGG | 0.413568 | 3.2:+92930472 | MS.gene68753:CDS |
| CCTGGACCATTTGATCTTGT+GGG | 0.422904 | 3.2:+92932308 | MS.gene68753:CDS |
| CTTAGTCCCAACTTCAACCT+TGG | 0.428972 | 3.2:-92932628 | None:intergenic |
| TTTATTTGATGTAGTGGTAA+AGG | 0.436615 | 3.2:+92930733 | MS.gene68753:intron |
| AGATCTTCCAAGGTTGAAGT+TGG | 0.438581 | 3.2:+92932621 | MS.gene68753:CDS |
| GCCTGGACCATTTGATCTTG+TGG | 0.445173 | 3.2:+92932307 | MS.gene68753:intron |
| TTCAATGGATGAATGGCTTC+AGG | 0.447599 | 3.2:+92932662 | MS.gene68753:CDS |
| GGGACCTTCCCTTCTGCCCC+AGG | 0.448790 | 3.2:+92930588 | MS.gene68753:CDS |
| TAAGACTACAGATGCTTCAA+TGG | 0.461758 | 3.2:+92932647 | MS.gene68753:CDS |
| AACATTGCATTACCTTAGAC+AGG | 0.473431 | 3.2:-92932502 | None:intergenic |
| ACCATTGAAGTTGTTGAGCC+TGG | 0.474828 | 3.2:+92932386 | MS.gene68753:CDS |
| GATCTTCCAAGGTTGAAGTT+GGG | 0.475146 | 3.2:+92932622 | MS.gene68753:CDS |
| TGCTGACAGAAAATATATAT+GGG | 0.475416 | 3.2:-92932167 | None:intergenic |
| CAGATGCTTCAATGGATGAA+TGG | 0.477366 | 3.2:+92932655 | MS.gene68753:CDS |
| TTATTTGATGTAGTGGTAAA+GGG | 0.480002 | 3.2:+92930734 | MS.gene68753:intron |
| TTGCACTTCTTATCCTACTT+GGG | 0.486809 | 3.2:+92932453 | MS.gene68753:CDS |
| GTGAATGACATCGGCATTGT+TGG | 0.490588 | 3.2:+92930531 | MS.gene68753:CDS |
| GATGAAGCTGTGGAGAATAC+TGG | 0.499870 | 3.2:+92930504 | MS.gene68753:CDS |
| CAGCGATGGTGTCAATTCCT+GGG | 0.503598 | 3.2:-92930605 | None:intergenic |
| GTGTCAATTCCTGGGGCAGA+AGG | 0.517036 | 3.2:-92930597 | None:intergenic |
| ATGGTGCCCACAAGATCAAA+TGG | 0.518920 | 3.2:-92932314 | None:intergenic |
| CAATTTCTACCTGAACAGTA+AGG | 0.525707 | 3.2:-92930976 | None:intergenic |
| GAAGAGGCAGAGCTACTTGT+CGG | 0.527005 | 3.2:+92930761 | MS.gene68753:CDS |
| AGTGGTAAAGGGTGGTGAAG+AGG | 0.534718 | 3.2:+92930745 | MS.gene68753:intron |
| ACCAGGCTCAACAACTTCAA+TGG | 0.539719 | 3.2:-92932387 | None:intergenic |
| CCCACAAGATCAAATGGTCC+AGG | 0.542064 | 3.2:-92932308 | None:intergenic |
| AAAGTAGCCTGAACTGAAGA+TGG | 0.549379 | 3.2:-92932144 | None:intergenic |
| ACAAGAAGACGATGATCGTA+TGG | 0.565759 | 3.2:-92930947 | None:intergenic |
| AATTCCTGGGGCAGAAGGGA+AGG | 0.572912 | 3.2:-92930592 | None:intergenic |
| GATGCTCAAGACTTTGCTGA+TGG | 0.576315 | 3.2:+92930567 | MS.gene68753:CDS |
| ATGCTCAAGACTTTGCTGAT+GGG | 0.587042 | 3.2:+92930568 | MS.gene68753:CDS |
| CATTAATCCATAGCCCAAGT+AGG | 0.597505 | 3.2:-92932466 | None:intergenic |
| AGCCTGAACTGAAGATGGCA+CGG | 0.612528 | 3.2:-92932139 | None:intergenic |
| TGTCAATTCCTGGGGCAGAA+GGG | 0.617861 | 3.2:-92930596 | None:intergenic |
| GAAGACGATGATCGTATGGA+AGG | 0.621122 | 3.2:-92930943 | None:intergenic |
| ATTCTTAGGGAACACAGCGA+TGG | 0.640325 | 3.2:-92930619 | None:intergenic |
| TTGGTCTATCTCGTATACAA+TGG | 0.646480 | 3.2:-92932333 | None:intergenic |
| GTGTCAGTCAGATGAAGCTG+TGG | 0.648091 | 3.2:+92930494 | MS.gene68753:CDS |
| TCCATACTGAATAAAACACC+AGG | 0.656320 | 3.2:-92932404 | None:intergenic |
| AGCGATGGTGTCAATTCCTG+GGG | 0.656423 | 3.2:-92930604 | None:intergenic |
| ACTGGTGAAGTGAATGACAT+CGG | 0.672577 | 3.2:+92930522 | MS.gene68753:CDS |
| TTTGATGTAGTGGTAAAGGG+TGG | 0.674392 | 3.2:+92930737 | MS.gene68753:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAAATAGATTTAATT+TGG | - | chr3.2:92931014-92931033 | None:intergenic | 10.0% |
| !! | AAAATAAAAACTAAAGAAAC+AGG | + | chr3.2:92931602-92931621 | MS.gene68753:intron | 15.0% |
| !! | AAATAAAAACTAAAGAAACA+GGG | + | chr3.2:92931603-92931622 | MS.gene68753:intron | 15.0% |
| !!! | AATAGTATATTGATTATTAC+AGG | - | chr3.2:92931114-92931133 | None:intergenic | 15.0% |
| !! | AATAAAAACTAAAGAAACAG+GGG | + | chr3.2:92931604-92931623 | MS.gene68753:intron | 20.0% |
| !! | AGATCTTTCTATATAAGATA+AGG | + | chr3.2:92930656-92930675 | MS.gene68753:intron | 20.0% |
| !! | CAAACTTATAGTTAATATGT+TGG | + | chr3.2:92931939-92931958 | MS.gene68753:intron | 20.0% |
| !! | TTATACATGTGTGTTAAAAT+GGG | + | chr3.2:92931734-92931753 | MS.gene68753:intron | 20.0% |
| !! | TTGACAAATCAATAATGTAA+AGG | - | chr3.2:92932815-92932834 | None:intergenic | 20.0% |
| !!! | ACAATATATTCTTTTAAGAC+TGG | + | chr3.2:92931475-92931494 | MS.gene68753:intron | 20.0% |
| !!! | ACTAAAGTATTTGCTATATA+TGG | + | chr3.2:92931189-92931208 | MS.gene68753:intron | 20.0% |
| !!! | ATAGATTTAATTTGGAGATT+TGG | - | chr3.2:92931006-92931025 | None:intergenic | 20.0% |
| !!! | CAATATATTCTTTTAAGACT+GGG | + | chr3.2:92931476-92931495 | MS.gene68753:intron | 20.0% |
| !!! | CTAAAGTATTTGCTATATAT+GGG | + | chr3.2:92931190-92931209 | MS.gene68753:intron | 20.0% |
| !!! | CTTATTTTCTAATCAAATCA+AGG | + | chr3.2:92931282-92931301 | MS.gene68753:intron | 20.0% |
| !!! | GTAATACTTTTTTTTGTGTA+AGG | - | chr3.2:92932075-92932094 | None:intergenic | 20.0% |
| ! | AAAATTAACACAAGATTGTC+AGG | - | chr3.2:92930707-92930726 | None:intergenic | 25.0% |
| ! | AAATATTCCATCCAAACATA+CGG | - | chr3.2:92931245-92931264 | None:intergenic | 25.0% |
| ! | AAATTAACACAAGATTGTCA+GGG | - | chr3.2:92930706-92930725 | None:intergenic | 25.0% |
| ! | ATACACAAATCAGTATGAAA+AGG | - | chr3.2:92932776-92932795 | None:intergenic | 25.0% |
| ! | ATGACAGTAAAATATCATCA+AGG | + | chr3.2:92931566-92931585 | MS.gene68753:intron | 25.0% |
| ! | CTTATACATGTGTGTTAAAA+TGG | + | chr3.2:92931733-92931752 | MS.gene68753:intron | 25.0% |
| ! | TACACAAATCAGTATGAAAA+GGG | - | chr3.2:92932775-92932794 | None:intergenic | 25.0% |
| ! | TACATTTCGCAATATTCTTA+GGG | - | chr3.2:92930635-92930654 | None:intergenic | 25.0% |
| ! | TACCAAAACACTTTCTATAA+TGG | + | chr3.2:92932362-92932381 | MS.gene68753:CDS | 25.0% |
| ! | TATAAGTTTGACAGAGTTAT+TGG | - | chr3.2:92931929-92931948 | None:intergenic | 25.0% |
| ! | TGACAGTAAAATATCATCAA+GGG | + | chr3.2:92931567-92931586 | MS.gene68753:intron | 25.0% |
| ! | TGCTGACAGAAAATATATAT+GGG | - | chr3.2:92932170-92932189 | None:intergenic | 25.0% |
| ! | TGTGCATATCTTTGTATAAA+TGG | - | chr3.2:92931458-92931477 | None:intergenic | 25.0% |
| ! | TGTTTCAATCAAAGTTATCA+TGG | - | chr3.2:92931062-92931081 | None:intergenic | 25.0% |
| ! | TTACATTTCGCAATATTCTT+AGG | - | chr3.2:92930636-92930655 | None:intergenic | 25.0% |
| ! | TTATTTGATGTAGTGGTAAA+GGG | + | chr3.2:92930734-92930753 | MS.gene68753:intron | 25.0% |
| ! | TTGCTGACAGAAAATATATA+TGG | - | chr3.2:92932171-92932190 | None:intergenic | 25.0% |
| ! | TTTATTTGATGTAGTGGTAA+AGG | + | chr3.2:92930733-92930752 | MS.gene68753:intron | 25.0% |
| ! | TTTGAATGTTGTTGCAATTA+AGG | + | chr3.2:92930910-92930929 | MS.gene68753:CDS | 25.0% |
| !! | TATGTTTGGATGGAATATTT+TGG | + | chr3.2:92931245-92931264 | MS.gene68753:intron | 25.0% |
| !!! | CATTTTAACACACATGTATA+AGG | - | chr3.2:92931735-92931754 | None:intergenic | 25.0% |
| !!! | TTAATCTCTGAAATGATTTG+TGG | + | chr3.2:92931138-92931157 | MS.gene68753:intron | 25.0% |
| !!! | TTATAGAAAGTGTTTTGGTA+TGG | - | chr3.2:92932362-92932381 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTATTTGATGTAG+TGG | + | chr3.2:92930727-92930746 | MS.gene68753:intron | 25.0% |
| AATAATACTCACGTGGTAAA+TGG | - | chr3.2:92932550-92932569 | None:intergenic | 30.0% | |
| AATTAACACAAGATTGTCAG+GGG | - | chr3.2:92930705-92930724 | None:intergenic | 30.0% | |
| AATTGCAACAACATTCAAAC+TGG | - | chr3.2:92930909-92930928 | None:intergenic | 30.0% | |
| ACACAAATCAGTATGAAAAG+GGG | - | chr3.2:92932774-92932793 | None:intergenic | 30.0% | |
| AGATCTATGTATGTACCAAA+TGG | - | chr3.2:92931867-92931886 | None:intergenic | 30.0% | |
| AGGCATGATAAATATAGAAG+GGG | - | chr3.2:92932265-92932284 | None:intergenic | 30.0% | |
| AGTACCATATAACATGGAAT+AGG | - | chr3.2:92931815-92931834 | None:intergenic | 30.0% | |
| ATAGATCTCTAAGTTCATCT+GGG | + | chr3.2:92931879-92931898 | MS.gene68753:intron | 30.0% | |
| ATATGCAAATAATACTCACG+TGG | - | chr3.2:92932557-92932576 | None:intergenic | 30.0% | |
| ATTCCCTATTCCATGTTATA+TGG | + | chr3.2:92931808-92931827 | MS.gene68753:intron | 30.0% | |
| CAGGCATGATAAATATAGAA+GGG | - | chr3.2:92932266-92932285 | None:intergenic | 30.0% | |
| GAAAACAAAAAGATCTTCCA+AGG | + | chr3.2:92932611-92932630 | MS.gene68753:intron | 30.0% | |
| GGAATCTGAATGAAATAAGA+GGG | - | chr3.2:92931793-92931812 | None:intergenic | 30.0% | |
| GGATATCAAAATACAAGGTT+AGG | - | chr3.2:92932847-92932866 | None:intergenic | 30.0% | |
| GTACCATATAACATGGAATA+GGG | - | chr3.2:92931814-92931833 | None:intergenic | 30.0% | |
| TAATTGCTTTACCGTATGTT+TGG | + | chr3.2:92931231-92931250 | MS.gene68753:intron | 30.0% | |
| TATAGCAAATACTTTAGTGC+AGG | - | chr3.2:92931187-92931206 | None:intergenic | 30.0% | |
| TATGTATGTACCAAATGGTT+GGG | - | chr3.2:92931862-92931881 | None:intergenic | 30.0% | |
| TCAAATACATAACCTGTCTA+AGG | + | chr3.2:92932490-92932509 | MS.gene68753:CDS | 30.0% | |
| TCAGGCATGATAAATATAGA+AGG | - | chr3.2:92932267-92932286 | None:intergenic | 30.0% | |
| TGTCACAAGACACAAATAAA+AGG | - | chr3.2:92930840-92930859 | None:intergenic | 30.0% | |
| TGTTGTATGGATCAATTTCA+GGG | + | chr3.2:92930879-92930898 | MS.gene68753:intron | 30.0% | |
| TTGTTGTATGGATCAATTTC+AGG | + | chr3.2:92930878-92930897 | MS.gene68753:intron | 30.0% | |
| ! | AATCAGAGTACCATATAACA+TGG | - | chr3.2:92931821-92931840 | None:intergenic | 30.0% |
| ! | AATGGAAGAGTATGTTCATA+TGG | - | chr3.2:92931440-92931459 | None:intergenic | 30.0% |
| ! | ATTTTGCAGGTTTTCAACAA+TGG | + | chr3.2:92932114-92932133 | MS.gene68753:intron | 30.0% |
| ! | GTGTTGTGTTATAATTTTGC+AGG | + | chr3.2:92932101-92932120 | MS.gene68753:intron | 30.0% |
| ! | TCTGTTTTCCTTTTTACTCT+TGG | + | chr3.2:92932428-92932447 | MS.gene68753:CDS | 30.0% |
| !! | TAACACTCGATTTTGTTGTA+TGG | + | chr3.2:92930866-92930885 | MS.gene68753:intron | 30.0% |
| !!! | AACCTTGTATTTTGATATCC+AGG | + | chr3.2:92932847-92932866 | MS.gene68753:intron | 30.0% |
| !!! | ACCTTGTATTTTGATATCCA+GGG | + | chr3.2:92932848-92932867 | MS.gene68753:intron | 30.0% |
| !!! | TGCCATTATAGAAAGTGTTT+TGG | - | chr3.2:92932367-92932386 | None:intergenic | 30.0% |
| AACATTGCATTACCTTAGAC+AGG | - | chr3.2:92932505-92932524 | None:intergenic | 35.0% | |
| ACAAATCAGTATGAAAAGGG+GGG | - | chr3.2:92932772-92932791 | None:intergenic | 35.0% | |
| ACAACAAAATCGAGTGTTAG+AGG | - | chr3.2:92930865-92930884 | None:intergenic | 35.0% | |
| ATATTGACAAAGTATGCACC+AGG | + | chr3.2:92931542-92931561 | MS.gene68753:intron | 35.0% | |
| ATTGCACTTCTTATCCTACT+TGG | + | chr3.2:92932452-92932471 | MS.gene68753:CDS | 35.0% | |
| CAATTTCTACCTGAACAGTA+AGG | - | chr3.2:92930979-92930998 | None:intergenic | 35.0% | |
| CACAAATCAGTATGAAAAGG+GGG | - | chr3.2:92932773-92932792 | None:intergenic | 35.0% | |
| CATAGATCTCTAAGTTCATC+TGG | + | chr3.2:92931878-92931897 | MS.gene68753:intron | 35.0% | |
| CTATGTATGTACCAAATGGT+TGG | - | chr3.2:92931863-92931882 | None:intergenic | 35.0% | |
| CTTACTGTTCAGGTAGAAAT+TGG | + | chr3.2:92930977-92930996 | MS.gene68753:intron | 35.0% | |
| GGGAATCTGAATGAAATAAG+AGG | - | chr3.2:92931794-92931813 | None:intergenic | 35.0% | |
| GTGCAATTCCAAGAGTAAAA+AGG | - | chr3.2:92932439-92932458 | None:intergenic | 35.0% | |
| TAAGACTACAGATGCTTCAA+TGG | + | chr3.2:92932647-92932666 | MS.gene68753:CDS | 35.0% | |
| TAAGGATTGTTAGATGTACG+AGG | - | chr3.2:92931717-92931736 | None:intergenic | 35.0% | |
| TATTGACAAAGTATGCACCA+GGG | + | chr3.2:92931543-92931562 | MS.gene68753:intron | 35.0% | |
| TCCATACTGAATAAAACACC+AGG | - | chr3.2:92932407-92932426 | None:intergenic | 35.0% | |
| TCCCTGGATATCAAAATACA+AGG | - | chr3.2:92932852-92932871 | None:intergenic | 35.0% | |
| TCTGAATGAAATAAGAGGGA+AGG | - | chr3.2:92931789-92931808 | None:intergenic | 35.0% | |
| TGAATAGCAACTCAAGGAAT+TGG | - | chr3.2:92931653-92931672 | None:intergenic | 35.0% | |
| TGTGTGTTAAAATGGGTATG+AGG | + | chr3.2:92931741-92931760 | MS.gene68753:intron | 35.0% | |
| TGTTCAAAACCTTACTGTTC+AGG | + | chr3.2:92930967-92930986 | MS.gene68753:CDS | 35.0% | |
| TTGCACTTCTTATCCTACTT+GGG | + | chr3.2:92932453-92932472 | MS.gene68753:CDS | 35.0% | |
| TTGGATGAATTAGTCGATTG+TGG | + | chr3.2:92931986-92932005 | MS.gene68753:intron | 35.0% | |
| TTGGTCTATCTCGTATACAA+TGG | - | chr3.2:92932336-92932355 | None:intergenic | 35.0% | |
| ! | AGTTGCTATTCACCATCTAT+GGG | + | chr3.2:92931661-92931680 | MS.gene68753:intron | 35.0% |
| ! | GAAGAGTATGTTCATATGGA+GGG | - | chr3.2:92931436-92931455 | None:intergenic | 35.0% |
| ! | TGATATTTTACTGTCATCCC+TGG | - | chr3.2:92931563-92931582 | None:intergenic | 35.0% |
| !! | CTTGCTTTTGCTAGTTCTTT+TGG | + | chr3.2:92931967-92931986 | MS.gene68753:intron | 35.0% |
| !! | GTTTGGATGGAATATTTTGG+AGG | + | chr3.2:92931248-92931267 | MS.gene68753:intron | 35.0% |
| !!! | AAGTGTTTTGGTATGGATGT+TGG | - | chr3.2:92932355-92932374 | None:intergenic | 35.0% |
| !!! | CAAGGTTTTGCTGTTTTAGT+AGG | + | chr3.2:92931509-92931528 | MS.gene68753:intron | 35.0% |
| AAAGTAGCCTGAACTGAAGA+TGG | - | chr3.2:92932147-92932166 | None:intergenic | 40.0% | |
| ACAAGAAGACGATGATCGTA+TGG | - | chr3.2:92930950-92930969 | None:intergenic | 40.0% | |
| ACTGGTGAAGTGAATGACAT+CGG | + | chr3.2:92930522-92930541 | MS.gene68753:CDS | 40.0% | |
| AGATCTTCCAAGGTTGAAGT+TGG | + | chr3.2:92932621-92932640 | MS.gene68753:CDS | 40.0% | |
| AGATGGTGAATAGCAACTCA+AGG | - | chr3.2:92931659-92931678 | None:intergenic | 40.0% | |
| ATGCTCAAGACTTTGCTGAT+GGG | + | chr3.2:92930568-92930587 | MS.gene68753:CDS | 40.0% | |
| ATGCTTCAAATGTCTGCATG+AGG | + | chr3.2:92932227-92932246 | MS.gene68753:intron | 40.0% | |
| CACAGCAAAAGAAAATGGTC+AGG | - | chr3.2:92932285-92932304 | None:intergenic | 40.0% | |
| CAGATGCTTCAATGGATGAA+TGG | + | chr3.2:92932655-92932674 | MS.gene68753:CDS | 40.0% | |
| CATTAATCCATAGCCCAAGT+AGG | - | chr3.2:92932469-92932488 | None:intergenic | 40.0% | |
| GATCTTCCAAGGTTGAAGTT+GGG | + | chr3.2:92932622-92932641 | MS.gene68753:CDS | 40.0% | |
| GGAGAGCTAAGTTCATATCA+TGG | - | chr3.2:92931409-92931428 | None:intergenic | 40.0% | |
| TATGTTCATATGGAGGGTTC+TGG | - | chr3.2:92931430-92931449 | None:intergenic | 40.0% | |
| TGCTTTACCGTATGTTTGGA+TGG | + | chr3.2:92931235-92931254 | MS.gene68753:intron | 40.0% | |
| TGTTCTTCTTGCTAGTTGCT+AGG | + | chr3.2:92930472-92930491 | MS.gene68753:CDS | 40.0% | |
| TTCAATGGATGAATGGCTTC+AGG | + | chr3.2:92932662-92932681 | MS.gene68753:CDS | 40.0% | |
| TTCTTATCCTACTTGGGCTA+TGG | + | chr3.2:92932459-92932478 | MS.gene68753:CDS | 40.0% | |
| TTTGATGTAGTGGTAAAGGG+TGG | + | chr3.2:92930737-92930756 | MS.gene68753:intron | 40.0% | |
| ! | CTACTTGGGCTATGGATTAA+TGG | + | chr3.2:92932467-92932486 | MS.gene68753:CDS | 40.0% |
| ! | GAGTTGCTATTCACCATCTA+TGG | + | chr3.2:92931660-92931679 | MS.gene68753:intron | 40.0% |
| ! | GGAAGAGTATGTTCATATGG+AGG | - | chr3.2:92931437-92931456 | None:intergenic | 40.0% |
| !! | AATATTTTGGAGGAGAGAGG+AGG | + | chr3.2:92931258-92931277 | MS.gene68753:intron | 40.0% |
| !! | CATCAGCTCTGGAAAAAGTA+AGG | - | chr3.2:92932210-92932229 | None:intergenic | 40.0% |
| !! | GCCTGGTGTTTTATTCAGTA+TGG | + | chr3.2:92932403-92932422 | MS.gene68753:CDS | 40.0% |
| !! | TGGAATATTTTGGAGGAGAG+AGG | + | chr3.2:92931255-92931274 | MS.gene68753:intron | 40.0% |
| AAACATCCTGTGCCCATAGA+TGG | - | chr3.2:92931676-92931695 | None:intergenic | 45.0% | |
| AACTTTGAATGCAGCAGGGT+TGG | + | chr3.2:92931627-92931646 | MS.gene68753:intron | 45.0% | |
| ACCAGGCTCAACAACTTCAA+TGG | - | chr3.2:92932390-92932409 | None:intergenic | 45.0% | |
| ACCATTGAAGTTGTTGAGCC+TGG | + | chr3.2:92932386-92932405 | MS.gene68753:CDS | 45.0% | |
| ACTGAGTATATGCAGTTCCC+TGG | - | chr3.2:92932868-92932887 | None:intergenic | 45.0% | |
| ATGGTGCCCACAAGATCAAA+TGG | - | chr3.2:92932317-92932336 | None:intergenic | 45.0% | |
| ATTCTTAGGGAACACAGCGA+TGG | - | chr3.2:92930622-92930641 | None:intergenic | 45.0% | |
| CCTGGACCATTTGATCTTGT+GGG | + | chr3.2:92932308-92932327 | MS.gene68753:CDS | 45.0% | |
| CTTAGTCCCAACTTCAACCT+TGG | - | chr3.2:92932631-92932650 | None:intergenic | 45.0% | |
| CTTGTCGGTCTGAAAAACGA+TGG | + | chr3.2:92930776-92930795 | MS.gene68753:CDS | 45.0% | |
| GAAGACGATGATCGTATGGA+AGG | - | chr3.2:92930946-92930965 | None:intergenic | 45.0% | |
| GATGAAGCTGTGGAGAATAC+TGG | + | chr3.2:92930504-92930523 | MS.gene68753:CDS | 45.0% | |
| GATGCTCAAGACTTTGCTGA+TGG | + | chr3.2:92930567-92930586 | MS.gene68753:CDS | 45.0% | |
| GGCTGCACAGCAAAAGAAAA+TGG | - | chr3.2:92932290-92932309 | None:intergenic | 45.0% | |
| GGGTATGAGGATGATTCTCT+TGG | + | chr3.2:92931754-92931773 | MS.gene68753:intron | 45.0% | |
| GTGAATGACATCGGCATTGT+TGG | + | chr3.2:92930531-92930550 | MS.gene68753:CDS | 45.0% | |
| TATTCACCATCTATGGGCAC+AGG | + | chr3.2:92931667-92931686 | MS.gene68753:intron | 45.0% | |
| TTCGATGATGCCCAACCATT+TGG | + | chr3.2:92931849-92931868 | MS.gene68753:intron | 45.0% | |
| TTCTGTCAGCAAGTTCTTGC+AGG | + | chr3.2:92932179-92932198 | MS.gene68753:CDS | 45.0% | |
| ! | GACATTTGAAGCATCAGCTC+TGG | - | chr3.2:92932221-92932240 | None:intergenic | 45.0% |
| !! | TTTTCTTTTGCTGTGCAGCC+TGG | + | chr3.2:92932290-92932309 | MS.gene68753:intron | 45.0% |
| AGACTGGGTTTCAGAGCACA+AGG | + | chr3.2:92931491-92931510 | MS.gene68753:intron | 50.0% | |
| AGCCTGAACTGAAGATGGCA+CGG | - | chr3.2:92932142-92932161 | None:intergenic | 50.0% | |
| AGGGGAACTTTGAATGCAGC+AGG | + | chr3.2:92931622-92931641 | MS.gene68753:intron | 50.0% | |
| AGTGGTAAAGGGTGGTGAAG+AGG | + | chr3.2:92930745-92930764 | MS.gene68753:intron | 50.0% | |
| CCCACAAGATCAAATGGTCC+AGG | - | chr3.2:92932311-92932330 | None:intergenic | 50.0% | |
| GAAGAGGCAGAGCTACTTGT+CGG | + | chr3.2:92930761-92930780 | MS.gene68753:CDS | 50.0% | |
| GCCTGGACCATTTGATCTTG+TGG | + | chr3.2:92932307-92932326 | MS.gene68753:intron | 50.0% | |
| GGGGAACTTTGAATGCAGCA+GGG | + | chr3.2:92931623-92931642 | MS.gene68753:intron | 50.0% | |
| GTGTCAGTCAGATGAAGCTG+TGG | + | chr3.2:92930494-92930513 | MS.gene68753:CDS | 50.0% | |
| TGTCAATTCCTGGGGCAGAA+GGG | - | chr3.2:92930599-92930618 | None:intergenic | 50.0% | |
| ! | ACAGCGATGGTGTCAATTCC+TGG | - | chr3.2:92930609-92930628 | None:intergenic | 50.0% |
| ! | AGCGATGGTGTCAATTCCTG+GGG | - | chr3.2:92930607-92930626 | None:intergenic | 50.0% |
| ! | CAGCGATGGTGTCAATTCCT+GGG | - | chr3.2:92930608-92930627 | None:intergenic | 50.0% |
| AATTCCTGGGGCAGAAGGGA+AGG | - | chr3.2:92930595-92930614 | None:intergenic | 55.0% | |
| CTCCGTGCCATCTTCAGTTC+AGG | + | chr3.2:92932137-92932156 | MS.gene68753:CDS | 55.0% | |
| GTGTCAATTCCTGGGGCAGA+AGG | - | chr3.2:92930600-92930619 | None:intergenic | 55.0% | |
| GGGACCTTCCCTTCTGCCCC+AGG | + | chr3.2:92930588-92930607 | MS.gene68753:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92930462 | 92932916 | 92930462 | ID=MS.gene68753 |
| chr3.2 | mRNA | 92930462 | 92932916 | 92930462 | ID=MS.gene68753.t1;Parent=MS.gene68753 |
| chr3.2 | exon | 92930462 | 92930651 | 92930462 | ID=MS.gene68753.t1.exon1;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92930462 | 92930651 | 92930462 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| chr3.2 | exon | 92930747 | 92930797 | 92930747 | ID=MS.gene68753.t1.exon2;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92930747 | 92930797 | 92930747 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| chr3.2 | exon | 92930900 | 92930988 | 92930900 | ID=MS.gene68753.t1.exon3;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92930900 | 92930988 | 92930900 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| chr3.2 | exon | 92932123 | 92932200 | 92932123 | ID=MS.gene68753.t1.exon4;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92932123 | 92932200 | 92932123 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| chr3.2 | exon | 92932308 | 92932511 | 92932308 | ID=MS.gene68753.t1.exon5;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92932308 | 92932511 | 92932308 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| chr3.2 | exon | 92932612 | 92932683 | 92932612 | ID=MS.gene68753.t1.exon6;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92932612 | 92932683 | 92932612 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| chr3.2 | exon | 92932869 | 92932916 | 92932869 | ID=MS.gene68753.t1.exon7;Parent=MS.gene68753.t1 |
| chr3.2 | CDS | 92932869 | 92932916 | 92932869 | ID=cds.MS.gene68753.t1;Parent=MS.gene68753.t1 |
| Gene Sequence |
| Protein sequence |
