AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69014

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69014.t1 MTR_6g088270 78.102 548 20 6 11 467 515 1053 0.0 779
MS.gene69014.t1 MTR_6g087300 42.037 383 75 8 130 440 50 357 4.01e-68 222
MS.gene69014.t1 MTR_6g087300 52.532 158 70 1 85 242 206 358 9.13e-44 157
MS.gene69014.t1 MTR_6g087300 40.506 158 39 4 310 458 46 157 1.88e-23 101
MS.gene69014.t1 MTR_2g039780 73.548 155 25 3 313 466 75 214 1.45e-65 210
MS.gene69014.t1 MTR_2g039780 50.331 151 63 3 126 265 63 212 1.03e-37 137
MS.gene69014.t1 MTR_6g027070 76.692 133 26 1 88 215 12 144 2.15e-58 189
MS.gene69014.t1 MTR_6g027070 42.000 150 33 2 299 413 13 143 1.38e-27 108
MS.gene69014.t1 MTR_6g088240 61.585 164 30 2 293 456 53 183 5.09e-54 179
MS.gene69014.t1 MTR_6g088240 46.448 183 67 2 106 257 1 183 6.23e-44 152
MS.gene69014.t1 MTR_6g084360 66.892 148 20 1 313 460 991 1109 1.15e-51 188
MS.gene69014.t1 MTR_6g084360 50.459 218 74 4 42 259 924 1107 1.24e-46 174
MS.gene69014.t1 MTR_2g039790 67.347 98 10 1 293 368 15 112 3.29e-35 128
MS.gene69014.t1 MTR_2g039790 47.170 106 37 2 85 175 17 118 8.39e-20 86.3
MS.gene69014.t1 MTR_0428s0020 36.471 255 80 6 77 319 30 214 3.32e-34 128
MS.gene69014.t1 MTR_0428s0020 45.000 180 37 5 293 451 38 176 1.14e-28 113
MS.gene69014.t1 MTR_6g088250 41.791 201 56 7 14 162 1139 1330 3.06e-26 113
MS.gene69014.t1 MTR_6g488290 40.000 175 52 4 77 239 30 163 5.91e-25 102
MS.gene69014.t1 MTR_6g488290 43.713 167 32 5 293 438 38 163 1.03e-23 98.6
MS.gene69014.t1 MTR_6g488300 47.097 155 34 6 18 147 1194 1325 9.66e-21 96.3
MS.gene69014.t1 MTR_6g066260 52.703 74 35 0 313 386 24 97 8.57e-19 81.6
MS.gene69014.t1 MTR_6g066260 82.500 40 7 0 148 187 58 97 2.03e-13 66.6
MS.gene69014.t1 MTR_6g087200 43.396 106 47 2 303 405 1009 1104 3.16e-17 85.1
MS.gene69014.t1 MTR_6g087200 72.414 58 6 1 149 206 1057 1104 4.20e-15 78.6
MS.gene69014.t1 MTR_0428s0030 46.729 107 34 2 42 147 1295 1379 7.83e-15 77.8
MS.gene69014.t1 MTR_0428s0040 54.839 93 19 6 7 87 78 159 6.82e-13 67.4
MS.gene69014.t1 MTR_6g003970 28.777 139 91 2 135 273 212 342 1.77e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69014.t1 AT4G29060 64.082 490 103 5 32 458 472 951 0.0 548
MS.gene69014.t1 AT4G29060 56.951 223 58 2 280 464 497 719 4.13e-70 240
MS.gene69014.t1 AT4G29060 56.349 252 70 4 32 259 472 707 9.13e-75 248
MS.gene69014.t1 AT4G29060 60.829 217 41 3 280 458 497 707 5.18e-72 241
MS.gene69014.t1 AT4G11120 27.005 374 204 14 92 462 76 383 1.33e-15 79.0

Find 88 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCTAACATGGTGCAATT+TGG 0.257616 6.2:-86751924 None:intergenic
TTCCTTCGTCAAAATAGTTT+CGG 0.274699 6.2:-86754373 None:intergenic
CAGTAACAACATACTCTACT+TGG 0.290961 6.2:-86753175 None:intergenic
AAACTGTCATCCTTAATAAA+AGG 0.301647 6.2:-86754510 None:intergenic
GTTCAACCTCGGAGAGGGTT+TGG 0.342209 6.2:+86753439 MS.gene69014:CDS
GAGCTAACATGGTGCAATTT+GGG 0.356747 6.2:-86751923 None:intergenic
TCTTTCACTGGAGTAGTTAC+CGG 0.365022 6.2:-86753515 None:intergenic
TCCTTCGTCAAAATAGTTTC+GGG 0.368422 6.2:-86754372 None:intergenic
CACTTTATCATTCTTGATGT+AGG 0.372974 6.2:-86753345 None:intergenic
TACATTCACGATGCACATAT+TGG 0.385045 6.2:+86754219 MS.gene69014:CDS
AGTAGTGGTCTCAGCCTCTT+TGG 0.388620 6.2:+86754045 MS.gene69014:CDS
AGCAACTTATCTAACTCTAA+TGG 0.392584 6.2:+86752466 MS.gene69014:CDS
TCTTCAACTTGTGCTGATAC+AGG 0.393393 6.2:-86752412 None:intergenic
CGACTTCAGCGGCAAAATCC+TGG 0.399336 6.2:-86753472 None:intergenic
TCAGTCTCCTCGTCTTTCAC+TGG 0.403723 6.2:-86753527 None:intergenic
CCTTCCTTCGGCAGTTGCAC+TGG 0.405063 6.2:-86753023 None:intergenic
ACTTTATCATTCTTGATGTA+GGG 0.407592 6.2:-86753344 None:intergenic
AAGCAACTTCGGGACGAAAC+AGG 0.415386 6.2:+86752890 MS.gene69014:CDS
AAGCAGACAATTGCAACAAT+TGG 0.418192 6.2:+86753386 MS.gene69014:CDS
CGCACAAACTTCAGCAAAAC+CGG 0.432677 6.2:+86753496 MS.gene69014:CDS
GGAAGAATCTCTAAGAGGTT+AGG 0.433943 6.2:+86754465 MS.gene69014:CDS
TAAAGTGACAGTAAAAGATA+TGG 0.440046 6.2:+86753361 MS.gene69014:CDS
TCTAACTCTAATGGACAAAC+TGG 0.444131 6.2:+86752475 MS.gene69014:CDS
TCTTTCTTCACGAATTCCTC+AGG 0.445506 6.2:-86753206 None:intergenic
AAACAACTTCGAGACGAAAC+CGG 0.448771 6.2:+86754070 MS.gene69014:CDS
AACTTTGAAACTGACTTTGT+TGG 0.450540 6.2:+86754258 MS.gene69014:CDS
CGAAACCGGTGCAGGGATGA+TGG 0.452026 6.2:+86754084 MS.gene69014:CDS
AGGCAAACTATAGCTGCTAT+TGG 0.457698 6.2:+86754552 MS.gene69014:CDS
AGAAGATCTTGCGTCAAAAC+CGG 0.460563 6.2:+86753250 MS.gene69014:CDS
CGAAGTTGCTTCACAAGTGC+TGG 0.465644 6.2:-86752878 None:intergenic
CATGAGGAAAGCTTGAATAA+AGG 0.466034 6.2:+86752199 MS.gene69014:CDS
TGAAAGTTACAAGGTTTGTT+CGG 0.466730 6.2:+86753417 MS.gene69014:CDS
GGCATTACTGCTTCAGATGA+AGG 0.469960 6.2:+86752496 MS.gene69014:CDS
TGGAAGAAGTGAGAAATTCA+AGG 0.470199 6.2:+86754278 MS.gene69014:CDS
CAGCACTTGTGAAGCAACTT+CGG 0.472018 6.2:+86752879 MS.gene69014:CDS
ATCCTTGATCTAATTTGCTC+CGG 0.478542 6.2:-86753269 None:intergenic
CGAAACAGGAGCTGGAATGA+TGG 0.479672 6.2:+86752904 MS.gene69014:CDS
CCTTGTAAGCTACGTTGGTA+TGG 0.481705 6.2:-86754640 None:intergenic
AAGTGAGAAATTCAAGGAGT+TGG 0.486954 6.2:+86754284 MS.gene69014:CDS
AGTAACAACATACTCTACTT+GGG 0.492110 6.2:-86753174 None:intergenic
CTTCGAGACGAAACCGGTGC+AGG 0.492786 6.2:+86754076 MS.gene69014:CDS
GTAAGAACCTATCCTTCCTT+CGG 0.495021 6.2:-86753035 None:intergenic
ATTAGATCAAGGATTGTTGA+AGG 0.498357 6.2:+86753278 MS.gene69014:CDS
GCAAGTTGCTGCTTGTCCAC+AGG 0.499547 6.2:+86754323 MS.gene69014:CDS
TTTATTCAAGCTTTCCTCAT+GGG 0.516309 6.2:-86752197 None:intergenic
TCAGATGAAGGCTCGAGTAA+AGG 0.519026 6.2:+86752508 MS.gene69014:CDS
AACCGGAGCAAATTAGATCA+AGG 0.527437 6.2:+86753267 MS.gene69014:CDS
CTTTATTCAAGCTTTCCTCA+TGG 0.529155 6.2:-86752198 None:intergenic
AGCACTTGTGAAGCAACTTC+GGG 0.530877 6.2:+86752880 MS.gene69014:CDS
GGGTTTGGAAAAGAAAAGCC+AGG 0.535470 6.2:+86753454 MS.gene69014:CDS
GGGGCACGCAGCCACTTGCA+TGG 0.540689 6.2:-86753153 None:intergenic
GAGAAAATATGAAAGTTACA+AGG 0.544236 6.2:+86753408 MS.gene69014:CDS
CTAGCAGCTGAAGGAAGAAT+CGG 0.544679 6.2:+86754192 MS.gene69014:intron
CTTCGGGACGAAACAGGAGC+TGG 0.545385 6.2:+86752896 MS.gene69014:CDS
GTTCGGTTCAACCTCGGAGA+GGG 0.551728 6.2:+86753434 MS.gene69014:CDS
GAAAACCTTGTAAGCTACGT+TGG 0.554221 6.2:-86754645 None:intergenic
TCGAAGTTGTTTGACCAAAG+AGG 0.554395 6.2:-86754059 None:intergenic
ACATTTCAACAGTATGAGAA+TGG 0.555204 6.2:+86751899 None:intergenic
TTAGCTCCTCAAGAAACTCC+AGG 0.561731 6.2:+86751939 MS.gene69014:CDS
AGTTTCTTGAGGAGCTAACA+TGG 0.563708 6.2:-86751934 None:intergenic
TTGTAGTGAAAGACTTGGTG+AGG 0.563821 6.2:+86754532 MS.gene69014:CDS
CAAGAACCTGGAGTTTCTTG+AGG 0.566964 6.2:-86751945 None:intergenic
GGAATTCGTGAAGAAAGAAA+CGG 0.571607 6.2:+86753211 MS.gene69014:CDS
GGATTGTTGAAGGACGGATA+AGG 0.572423 6.2:+86753288 MS.gene69014:CDS
CCAGTGCAACTGCCGAAGGA+AGG 0.572504 6.2:+86753023 MS.gene69014:CDS
GATCAAGGATTGTTGAAGGA+CGG 0.572700 6.2:+86753282 MS.gene69014:CDS
ACAGTCCATCATCCCTGCAC+CGG 0.581858 6.2:-86754089 None:intergenic
GCAACTGCCGAAGGAAGGAT+AGG 0.582552 6.2:+86753028 MS.gene69014:CDS
GTAACAACATACTCTACTTG+GGG 0.587126 6.2:-86753173 None:intergenic
TCGAGGGAAGAATCTCTAAG+AGG 0.594022 6.2:+86754460 MS.gene69014:CDS
AATGCTCTTTCTGAAAGTGA+AGG 0.599535 6.2:+86752935 MS.gene69014:CDS
TGAAGCAGTTGCAATTGCAT+CGG 0.603597 6.2:+86752435 MS.gene69014:CDS
AGGTTTGTTCGGTTCAACCT+CGG 0.604002 6.2:+86753428 MS.gene69014:CDS
TTCGAGACGAAACCGGTGCA+GGG 0.605797 6.2:+86754077 MS.gene69014:CDS
ATAGATACAAACTGAACCTG+TGG 0.617602 6.2:-86754339 None:intergenic
CATTAGAGAGAAAATTGTCG+AGG 0.623126 6.2:+86754443 MS.gene69014:CDS
ACGGATAAGGAAAAGACTTG+AGG 0.629079 6.2:+86753301 MS.gene69014:CDS
ATTAGAGAGAAAATTGTCGA+GGG 0.630225 6.2:+86754444 MS.gene69014:CDS
GCAACCAGTGCAACTGCCGA+AGG 0.631404 6.2:+86753019 MS.gene69014:CDS
TTGCAGGAAATCAACAGTAG+TGG 0.634733 6.2:+86754030 MS.gene69014:intron
TGATGCTAGTTTGTCCCATG+AGG 0.638393 6.2:+86752183 MS.gene69014:CDS
TGTTCGGTTCAACCTCGGAG+AGG 0.640909 6.2:+86753433 MS.gene69014:CDS
AGTTTGTGCGGCGACTTCAG+CGG 0.652389 6.2:-86753483 None:intergenic
TGTTACTGAAAACGTTCCTG+AGG 0.662710 6.2:+86753190 MS.gene69014:CDS
CGATGATATAGCCATGCAAG+TGG 0.678787 6.2:+86753142 MS.gene69014:CDS
TTGGAGAGAACATTAAAGTG+CGG 0.701032 6.2:+86754571 MS.gene69014:CDS
TAACAACATACTCTACTTGG+GGG 0.727944 6.2:-86753172 None:intergenic
AACTACTCCAGTGAAAGACG+AGG 0.739655 6.2:+86753520 MS.gene69014:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATATATTAAAAA+TGG - chr6.2:86752673-86752692 None:intergenic 0.0%
!! ATTTAACATAAATAGAGTTT+GGG - chr6.2:86753826-86753845 None:intergenic 15.0%
!! TATTTAACATAAATAGAGTT+TGG - chr6.2:86753827-86753846 None:intergenic 15.0%
!!! TTATCTTATAAGCTTTAATT+AGG + chr6.2:86752735-86752754 MS.gene69014:intron 15.0%
!!! TTTGATTTTAGTTGTAATTT+CGG - chr6.2:86752047-86752066 None:intergenic 15.0%
!! ACACAAAATTTGAGAAAAAA+TGG + chr6.2:86753969-86753988 MS.gene69014:intron 20.0%
!! GTATTTACATATGGAAATAT+TGG + chr6.2:86752007-86752026 MS.gene69014:intron 20.0%
!! TTATCTAAGAATTCAAAGAT+AGG - chr6.2:86752801-86752820 None:intergenic 20.0%
! AAACTGTCATCCTTAATAAA+AGG - chr6.2:86754513-86754532 None:intergenic 25.0%
! ACTTTATCATTCTTGATGTA+GGG - chr6.2:86753347-86753366 None:intergenic 25.0%
! ATCTCATTCGTATTTACATA+TGG + chr6.2:86751998-86752017 MS.gene69014:intron 25.0%
! ATGAAGCAAATAAGATGAAA+TGG - chr6.2:86752537-86752556 None:intergenic 25.0%
! CAAAGTTAATAGGATACTAT+AGG - chr6.2:86752304-86752323 None:intergenic 25.0%
! GAAATCTACAAACTATATCA+GGG + chr6.2:86753765-86753784 MS.gene69014:intron 25.0%
! GAGAAAATATGAAAGTTACA+AGG + chr6.2:86753408-86753427 MS.gene69014:CDS 25.0%
! TAAAGTGACAGTAAAAGATA+TGG + chr6.2:86753361-86753380 MS.gene69014:CDS 25.0%
! TAAATACGAATGAGATAGAA+GGG - chr6.2:86751994-86752013 None:intergenic 25.0%
! TATCTACTTTGGCATAATTA+CGG - chr6.2:86753615-86753634 None:intergenic 25.0%
! TGAAATCTACAAACTATATC+AGG + chr6.2:86753764-86753783 MS.gene69014:intron 25.0%
!! AATTTTCTCTCTAATGTTCT+CGG - chr6.2:86754439-86754458 None:intergenic 25.0%
AACATAAATAGAGTTTGGGA+AGG - chr6.2:86753822-86753841 None:intergenic 30.0%
AGCAACTTATCTAACTCTAA+TGG + chr6.2:86752466-86752485 MS.gene69014:CDS 30.0%
AGGATACTATAGGAAAAGAA+AGG - chr6.2:86752294-86752313 None:intergenic 30.0%
AGTAACAACATACTCTACTT+GGG - chr6.2:86753177-86753196 None:intergenic 30.0%
ATAGAGGAGTCAAAGTTAAT+AGG - chr6.2:86752314-86752333 None:intergenic 30.0%
ATGCCAAAGTAGATATTTCT+TGG + chr6.2:86753620-86753639 MS.gene69014:intron 30.0%
ATTAACTTTGACTCCTCTAT+CGG + chr6.2:86752314-86752333 MS.gene69014:intron 30.0%
ATTAGAGAGAAAATTGTCGA+GGG + chr6.2:86754444-86754463 MS.gene69014:CDS 30.0%
ATTAGATCAAGGATTGTTGA+AGG + chr6.2:86753278-86753297 MS.gene69014:CDS 30.0%
CACTTTATCATTCTTGATGT+AGG - chr6.2:86753348-86753367 None:intergenic 30.0%
CTATAGCAAGAATAACTCAT+AGG - chr6.2:86753853-86753872 None:intergenic 30.0%
GAATTCAAAGATAGGTAAAC+AGG - chr6.2:86752793-86752812 None:intergenic 30.0%
GATACTATAGGAAAAGAAAG+GGG - chr6.2:86752292-86752311 None:intergenic 30.0%
GGATACTATAGGAAAAGAAA+GGG - chr6.2:86752293-86752312 None:intergenic 30.0%
GTAAATACGAATGAGATAGA+AGG - chr6.2:86751995-86752014 None:intergenic 30.0%
GTCATCTATATGAAATGCAA+AGG - chr6.2:86752131-86752150 None:intergenic 30.0%
TAGAAAACTATGACCTTGTT+TGG - chr6.2:86752769-86752788 None:intergenic 30.0%
TCATTGAACTACACTTACTT+TGG - chr6.2:86753554-86753573 None:intergenic 30.0%
TGAAGTGAATGAAAAAGAGT+AGG - chr6.2:86753695-86753714 None:intergenic 30.0%
TGTAGATTTCAAAAGTGAGT+CGG - chr6.2:86753755-86753774 None:intergenic 30.0%
TTCCTTCGTCAAAATAGTTT+CGG - chr6.2:86754376-86754395 None:intergenic 30.0%
TTTATTCAAGCTTTCCTCAT+GGG - chr6.2:86752200-86752219 None:intergenic 30.0%
! ATTTTCTCTCTAATGTTCTC+GGG - chr6.2:86754438-86754457 None:intergenic 30.0%
! TGAAAGTTACAAGGTTTGTT+CGG + chr6.2:86753417-86753436 MS.gene69014:CDS 30.0%
! TTAGGTTGTTTATCCAAACA+AGG + chr6.2:86752753-86752772 MS.gene69014:intron 30.0%
!! AACTTTGAAACTGACTTTGT+TGG + chr6.2:86754258-86754277 MS.gene69014:CDS 30.0%
AAATAGAGTTTGGGAAGGTT+AGG - chr6.2:86753817-86753836 None:intergenic 35.0%
AAGCAGACAATTGCAACAAT+TGG + chr6.2:86753386-86753405 MS.gene69014:CDS 35.0%
AAGTGAGAAATTCAAGGAGT+TGG + chr6.2:86754284-86754303 MS.gene69014:CDS 35.0%
AATAGAGTTTGGGAAGGTTA+GGG - chr6.2:86753816-86753835 None:intergenic 35.0%
ACAGATAGAAAACAAGAACC+TGG - chr6.2:86751960-86751979 None:intergenic 35.0%
ATAGATACAAACTGAACCTG+TGG - chr6.2:86754342-86754361 None:intergenic 35.0%
ATATAGTTGCTGCAATCCAA+AGG - chr6.2:86752856-86752875 None:intergenic 35.0%
ATTGTTCAATGTTGTCTTGC+AGG + chr6.2:86754014-86754033 MS.gene69014:intron 35.0%
CAAATCATACAGTCACAGTT+AGG - chr6.2:86753887-86753906 None:intergenic 35.0%
CAAGAGCTCCTTAGAAAAAA+AGG + chr6.2:86752974-86752993 MS.gene69014:CDS 35.0%
CAAGCATATCTCAGGAAAAA+GGG + chr6.2:86754138-86754157 MS.gene69014:intron 35.0%
CAGTAACAACATACTCTACT+TGG - chr6.2:86753178-86753197 None:intergenic 35.0%
CATGAGGAAAGCTTGAATAA+AGG + chr6.2:86752199-86752218 MS.gene69014:CDS 35.0%
CATTAGAGAGAAAATTGTCG+AGG + chr6.2:86754443-86754462 MS.gene69014:CDS 35.0%
CTTTATTCAAGCTTTCCTCA+TGG - chr6.2:86752201-86752220 None:intergenic 35.0%
GAGCCAAGAAATATCTACTT+TGG - chr6.2:86753626-86753645 None:intergenic 35.0%
GGAATTCGTGAAGAAAGAAA+CGG + chr6.2:86753211-86753230 MS.gene69014:CDS 35.0%
GTAACAACATACTCTACTTG+GGG - chr6.2:86753176-86753195 None:intergenic 35.0%
TAACAACATACTCTACTTGG+GGG - chr6.2:86753175-86753194 None:intergenic 35.0%
TACATTCACGATGCACATAT+TGG + chr6.2:86754219-86754238 MS.gene69014:CDS 35.0%
TATAGTTGCTGCAATCCAAA+GGG - chr6.2:86752855-86752874 None:intergenic 35.0%
TCAAATGTCCGTATTTGTGT+TGG - chr6.2:86753932-86753951 None:intergenic 35.0%
TCATACGCTGATAAGAAATC+CGG + chr6.2:86754165-86754184 MS.gene69014:intron 35.0%
TCCTTCGTCAAAATAGTTTC+GGG - chr6.2:86754375-86754394 None:intergenic 35.0%
TGGAAGAAGTGAGAAATTCA+AGG + chr6.2:86754278-86754297 MS.gene69014:CDS 35.0%
TTGGAGAGAACATTAAAGTG+CGG + chr6.2:86754571-86754590 MS.gene69014:CDS 35.0%
! AATGCTCTTTCTGAAAGTGA+AGG + chr6.2:86752935-86752954 MS.gene69014:CDS 35.0%
! TCTAACTCTAATGGACAAAC+TGG + chr6.2:86752475-86752494 MS.gene69014:CDS 35.0%
! TTTTGTGTGTACAACTAGCA+TGG - chr6.2:86753957-86753976 None:intergenic 35.0%
!! ATCCTTGATCTAATTTGCTC+CGG - chr6.2:86753272-86753291 None:intergenic 35.0%
!! CAGTTTTGTAGTGAAAGACT+TGG + chr6.2:86754527-86754546 MS.gene69014:CDS 35.0%
!! TCTAGAGCAGCCTTTTATTA+AGG + chr6.2:86754500-86754519 MS.gene69014:CDS 35.0%
!!! TCGCTAAGCCTTTTTTTCTA+AGG - chr6.2:86752985-86753004 None:intergenic 35.0%
AAACAACTTCGAGACGAAAC+CGG + chr6.2:86754070-86754089 MS.gene69014:CDS 40.0%
AACCGGAGCAAATTAGATCA+AGG + chr6.2:86753267-86753286 MS.gene69014:CDS 40.0%
ACGGATAAGGAAAAGACTTG+AGG + chr6.2:86753301-86753320 MS.gene69014:CDS 40.0%
AGAAGATCTTGCGTCAAAAC+CGG + chr6.2:86753250-86753269 MS.gene69014:CDS 40.0%
AGGCAAACTATAGCTGCTAT+TGG + chr6.2:86754552-86754571 MS.gene69014:CDS 40.0%
AGTTTCTTGAGGAGCTAACA+TGG - chr6.2:86751937-86751956 None:intergenic 40.0%
GAGCTAACATGGTGCAATTT+GGG - chr6.2:86751926-86751945 None:intergenic 40.0%
GATCAAGGATTGTTGAAGGA+CGG + chr6.2:86753282-86753301 MS.gene69014:CDS 40.0%
GCAAGCATATCTCAGGAAAA+AGG + chr6.2:86754137-86754156 MS.gene69014:intron 40.0%
GTAAGAACCTATCCTTCCTT+CGG - chr6.2:86753038-86753057 None:intergenic 40.0%
GTAGATATTTCTTGGCTCAG+CGG + chr6.2:86753628-86753647 MS.gene69014:intron 40.0%
TCAATTACATCTGCCGATAG+AGG - chr6.2:86752330-86752349 None:intergenic 40.0%
TCGAAGTTGTTTGACCAAAG+AGG - chr6.2:86754062-86754081 None:intergenic 40.0%
TCTTTCACTGGAGTAGTTAC+CGG - chr6.2:86753518-86753537 None:intergenic 40.0%
TCTTTCTTCACGAATTCCTC+AGG - chr6.2:86753209-86753228 None:intergenic 40.0%
TGAAGCAGTTGCAATTGCAT+CGG + chr6.2:86752435-86752454 MS.gene69014:CDS 40.0%
TGTTACTGAAAACGTTCCTG+AGG + chr6.2:86753190-86753209 MS.gene69014:CDS 40.0%
TTGCAGGAAATCAACAGTAG+TGG + chr6.2:86754030-86754049 MS.gene69014:intron 40.0%
! GGAAGAATCTCTAAGAGGTT+AGG + chr6.2:86754465-86754484 MS.gene69014:CDS 40.0%
! TCTTCAACTTGTGCTGATAC+AGG - chr6.2:86752415-86752434 None:intergenic 40.0%
!! CGTTTTGTTCGGTTCACTAT+CGG + chr6.2:86754594-86754613 MS.gene69014:CDS 40.0%
!! GGAAAGCACCAACACAAATA+CGG + chr6.2:86753921-86753940 MS.gene69014:intron 40.0%
!! TTAAAGTGCGGCGTTTTGTT+CGG + chr6.2:86754583-86754602 MS.gene69014:CDS 40.0%
!! TTGTAGTGAAAGACTTGGTG+AGG + chr6.2:86754532-86754551 MS.gene69014:CDS 40.0%
!!! TCCCGAAACTATTTTGACGA+AGG + chr6.2:86754371-86754390 MS.gene69014:CDS 40.0%
AACGGAAGGCGATCTTGAAA+AGG + chr6.2:86754113-86754132 MS.gene69014:intron 45.0%
AACTACTCCAGTGAAAGACG+AGG + chr6.2:86753520-86753539 MS.gene69014:CDS 45.0%
AGCACTTGTGAAGCAACTTC+GGG + chr6.2:86752880-86752899 MS.gene69014:CDS 45.0%
CAAGAACCTGGAGTTTCTTG+AGG - chr6.2:86751948-86751967 None:intergenic 45.0%
CAGCACTTGTGAAGCAACTT+CGG + chr6.2:86752879-86752898 MS.gene69014:CDS 45.0%
CGATGATATAGCCATGCAAG+TGG + chr6.2:86753142-86753161 MS.gene69014:CDS 45.0%
CGCACAAACTTCAGCAAAAC+CGG + chr6.2:86753496-86753515 MS.gene69014:CDS 45.0%
CTAGCAGCTGAAGGAAGAAT+CGG + chr6.2:86754192-86754211 MS.gene69014:intron 45.0%
GGAGCTAACATGGTGCAATT+TGG - chr6.2:86751927-86751946 None:intergenic 45.0%
GGATTGTTGAAGGACGGATA+AGG + chr6.2:86753288-86753307 MS.gene69014:CDS 45.0%
GGCATTACTGCTTCAGATGA+AGG + chr6.2:86752496-86752515 MS.gene69014:CDS 45.0%
GGGTTTGGAAAAGAAAAGCC+AGG + chr6.2:86753454-86753473 MS.gene69014:CDS 45.0%
GTGCTAAATCGTTCAGGCAA+TGG + chr6.2:86753652-86753671 MS.gene69014:intron 45.0%
GTTCTTACATCCATGACAGC+AGG + chr6.2:86753050-86753069 MS.gene69014:intron 45.0%
TACATCCATGACAGCAGGAT+CGG + chr6.2:86753055-86753074 MS.gene69014:intron 45.0%
TCAGATGAAGGCTCGAGTAA+AGG + chr6.2:86752508-86752527 MS.gene69014:CDS 45.0%
TCGAGGGAAGAATCTCTAAG+AGG + chr6.2:86754460-86754479 MS.gene69014:CDS 45.0%
TTAGCTCCTCAAGAAACTCC+AGG + chr6.2:86751939-86751958 MS.gene69014:CDS 45.0%
TTCAGGAGAGGGAACTTGAT+TGG - chr6.2:86752359-86752378 None:intergenic 45.0%
TTGTTCTTGCACCTCTTCAG+TGG - chr6.2:86752389-86752408 None:intergenic 45.0%
! AAAAGGCGCAAGCATATCTC+AGG + chr6.2:86754130-86754149 MS.gene69014:intron 45.0%
! AGGTTTGTTCGGTTCAACCT+CGG + chr6.2:86753428-86753447 MS.gene69014:CDS 45.0%
! CGGTTTTGCTGAAGTTTGTG+CGG - chr6.2:86753498-86753517 None:intergenic 45.0%
! TGATGCTAGTTTGTCCCATG+AGG + chr6.2:86752183-86752202 MS.gene69014:CDS 45.0%
! TGATTTGTGAGCGTCAGTCT+AGG + chr6.2:86753900-86753919 MS.gene69014:intron 45.0%
!! CAGGGATGATGGACTGTAAA+CGG + chr6.2:86754095-86754114 MS.gene69014:intron 45.0%
!! GATGATGGACTGTAAACGGA+AGG + chr6.2:86754099-86754118 MS.gene69014:intron 45.0%
!!! TGTTCTCGGGTTTTGAAGCA+AGG - chr6.2:86754425-86754444 None:intergenic 45.0%
AAACACCGATCCTGCTGTCA+TGG - chr6.2:86753063-86753082 None:intergenic 50.0%
AAGCAACTTCGGGACGAAAC+AGG + chr6.2:86752890-86752909 MS.gene69014:CDS 50.0%
AGCGGTGTGCTAAATCGTTC+AGG + chr6.2:86753646-86753665 MS.gene69014:intron 50.0%
AGTAGTGGTCTCAGCCTCTT+TGG + chr6.2:86754045-86754064 MS.gene69014:CDS 50.0%
CGAAACAGGAGCTGGAATGA+TGG + chr6.2:86752904-86752923 MS.gene69014:CDS 50.0%
CGAAGTTGCTTCACAAGTGC+TGG - chr6.2:86752881-86752900 None:intergenic 50.0%
TCAGTCTCCTCGTCTTTCAC+TGG - chr6.2:86753530-86753549 None:intergenic 50.0%
TCTTCAGTGGCAGGACTTTC+AGG - chr6.2:86752376-86752395 None:intergenic 50.0%
TGAAAGTCCTGCCACTGAAG+AGG + chr6.2:86752375-86752394 MS.gene69014:intron 50.0%
! GCGAGACAGATTTTCTCTCG+AGG + chr6.2:86753098-86753117 MS.gene69014:intron 50.0%
! TCTTTTCCAAACCCTCTCCG+AGG - chr6.2:86753448-86753467 None:intergenic 50.0%
!! TCCTTCAGCTGCTAGTCTTC+CGG - chr6.2:86754187-86754206 None:intergenic 50.0%
!! TGACAGCAGGATCGGTGTTT+TGG + chr6.2:86753063-86753082 MS.gene69014:intron 50.0%
ACAGTCCATCATCCCTGCAC+CGG - chr6.2:86754092-86754111 None:intergenic 55.0%
AGTGGCAGGACTTTCAGGAG+AGG - chr6.2:86752371-86752390 None:intergenic 55.0%
AGTTTGTGCGGCGACTTCAG+CGG - chr6.2:86753486-86753505 None:intergenic 55.0%
ATGTCTGTTCCGCTGCCCTT+TGG + chr6.2:86752837-86752856 MS.gene69014:intron 55.0%
CGACTTCAGCGGCAAAATCC+TGG - chr6.2:86753475-86753494 None:intergenic 55.0%
GCAACTGCCGAAGGAAGGAT+AGG + chr6.2:86753028-86753047 MS.gene69014:CDS 55.0%
GTGGCAGGACTTTCAGGAGA+GGG - chr6.2:86752370-86752389 None:intergenic 55.0%
GTTCAACCTCGGAGAGGGTT+TGG + chr6.2:86753439-86753458 MS.gene69014:CDS 55.0%
GTTCGGTTCAACCTCGGAGA+GGG + chr6.2:86753434-86753453 MS.gene69014:CDS 55.0%
TCCGGAAGACTAGCAGCTGA+AGG + chr6.2:86754183-86754202 MS.gene69014:intron 55.0%
TCTTGCACCTCTTCAGTGGC+AGG - chr6.2:86752385-86752404 None:intergenic 55.0%
TGCTGCAATCCAAAGGGCAG+CGG - chr6.2:86752849-86752868 None:intergenic 55.0%
TGTTCGGTTCAACCTCGGAG+AGG + chr6.2:86753433-86753452 MS.gene69014:CDS 55.0%
TTCGAGACGAAACCGGTGCA+GGG + chr6.2:86754077-86754096 MS.gene69014:CDS 55.0%
! GCAAGTTGCTGCTTGTCCAC+AGG + chr6.2:86754323-86754342 MS.gene69014:CDS 55.0%
CCAGTGCAACTGCCGAAGGA+AGG + chr6.2:86753023-86753042 MS.gene69014:CDS 60.0%
CCTTCCTTCGGCAGTTGCAC+TGG - chr6.2:86753026-86753045 None:intergenic 60.0%
CGAAACCGGTGCAGGGATGA+TGG + chr6.2:86754084-86754103 MS.gene69014:CDS 60.0%
CTTCGAGACGAAACCGGTGC+AGG + chr6.2:86754076-86754095 MS.gene69014:CDS 60.0%
CTTCGGGACGAAACAGGAGC+TGG + chr6.2:86752896-86752915 MS.gene69014:CDS 60.0%
GCAACCAGTGCAACTGCCGA+AGG + chr6.2:86753019-86753038 MS.gene69014:CDS 60.0%
GGGGCACGCAGCCACTTGCA+TGG - chr6.2:86753156-86753175 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 86751912 86754653 86751912 ID=MS.gene69014
chr6.2 mRNA 86751912 86754653 86751912 ID=MS.gene69014.t1;Parent=MS.gene69014
chr6.2 exon 86751912 86751960 86751912 ID=MS.gene69014.t1.exon1;Parent=MS.gene69014.t1
chr6.2 CDS 86751912 86751960 86751912 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
chr6.2 exon 86752146 86752220 86752146 ID=MS.gene69014.t1.exon2;Parent=MS.gene69014.t1
chr6.2 CDS 86752146 86752220 86752146 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
chr6.2 exon 86752395 86752529 86752395 ID=MS.gene69014.t1.exon3;Parent=MS.gene69014.t1
chr6.2 CDS 86752395 86752529 86752395 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
chr6.2 exon 86752867 86753049 86752867 ID=MS.gene69014.t1.exon4;Parent=MS.gene69014.t1
chr6.2 CDS 86752867 86753049 86752867 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
chr6.2 exon 86753120 86753555 86753120 ID=MS.gene69014.t1.exon5;Parent=MS.gene69014.t1
chr6.2 CDS 86753120 86753555 86753120 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
chr6.2 exon 86754036 86754109 86754036 ID=MS.gene69014.t1.exon6;Parent=MS.gene69014.t1
chr6.2 CDS 86754036 86754109 86754036 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
chr6.2 exon 86754199 86754653 86754199 ID=MS.gene69014.t1.exon7;Parent=MS.gene69014.t1
chr6.2 CDS 86754199 86754653 86754199 ID=cds.MS.gene69014.t1;Parent=MS.gene69014.t1
Gene Sequence

>MS.gene69014

ATGAGAATGGTCCCAAATTGCACCATGTTAGCTCCTCAAGAAACTCCAGGTTCTTGTTTTCTATCTGTCTCTCTTTCTGCCCTTCTATCTCATTCGTATTTACATATGGAAATATTGGTCGTATGTCATTATCCGAAATTACAACTAAAATCAAACATATTTTGTGCAGTAAGATGCATGTTTAAGAGTTTCTTATTAACTTTACTAATAATATTTCCTTTGCATTTCATATAGATGACAATGTTGCAGCTGTTTCAGAGAACAATGAGATTGATGCTAGTTTGTCCCATGAGGAAAGCTTGAATAAAGGTTATGAATGAAATTGATAGAAAGTTTTTTGAGCTTGTTTGAACTTTATATTTAAATCATATATTACACCCCTTTCTTTTCCTATAGTATCCTATTAACTTTGACTCCTCTATCGGCAGATGTAATTGAAGAAAACCAATCAAGTTCCCTCTCCTGAAAGTCCTGCCACTGAAGAGGTGCAAGAACAAACACCTGTATCAGCACAAGTTGAAGATGAAGCAGTTGCAATTGCATCGGAGACAAACAGCAACTTATCTAACTCTAATGGACAAACTGGCATTACTGCTTCAGATGAAGGCTCGAGTAAAGGTTTCCATTTCATCTTATTTGCTTCATATTTCAACTCTCATTTTTCTACATCAAACAGACGTAAATATGTTAGACAGATTTGAATTTATACATGTATTTCAGTTTTTACATGCAAAAGAGAAGAAAAAAAGAATATACTTCCATTTTTAATATATTTTATTTTGTTATAAAAATAGCTTATACTTAACACTTATATAATAAGCGCTTATCTTATAAGCTTTAATTAGGTTGTTTATCCAAACAAGGTCATAGTTTTCTAACCTGTTTACCTATCTTTGAATTCTTAGATAAGACTTCTAATTGTTAAATGTCTGTTCCGCTGCCCTTTGGATTGCAGCAACTATATCACCAGCACTTGTGAAGCAACTTCGGGACGAAACAGGAGCTGGAATGATGGACTGCAAAAATGCTCTTTCTGAAAGTGAAGGTGACATTATCAAAGCACAAGAGCTCCTTAGAAAAAAAGGCTTAGCGAGTGCAGACAAAAAAGCAACCAGTGCAACTGCCGAAGGAAGGATAGGTTCTTACATCCATGACAGCAGGATCGGTGTTTTGGTAGAAGTAAACTGCGAGACAGATTTTCTCTCGAGGTGAAATTTTCAAAGAGCTTGTCGATGATATAGCCATGCAAGTGGCTGCGTGCCCCCAAGTAGAGTATGTTGTTACTGAAAACGTTCCTGAGGAATTCGTGAAGAAAGAAACGGAGATAGAAATGCAAAAAGAAGATCTTGCGTCAAAACCGGAGCAAATTAGATCAAGGATTGTTGAAGGACGGATAAGGAAAAGACTTGAGGATTTAGCATCGCTTGAGCAGCCCTACATCAAGAATGATAAAGTGACAGTAAAAGATATGGTTAAGCAGACAATTGCAACAATTGGAGAAAATATGAAAGTTACAAGGTTTGTTCGGTTCAACCTCGGAGAGGGTTTGGAAAAGAAAAGCCAGGATTTTGCCGCTGAAGTCGCCGCACAAACTTCAGCAAAACCGGTAACTACTCCAGTGAAAGACGAGGAGACTGAACCAAAGTAAGTGTAGTTCAATGAACTTCTACTTGTTATTGAGTTGTTTAATTATGAAATTTCCGTAATTATGCCAAAGTAGATATTTCTTGGCTCAGCGGTGTGCTAAATCGTTCAGGCAATGGCTTGAATATCTCATTCTCCTACTCTTTTTCATTCACTTCAAATTTTATATTACTCTTTTTACAAATGATGTGAAGAGCCGACTCACTTTTGAAATCTACAAACTATATCAGGGTGCTAAGTTTTCTTGAATATTTTAACCCTAACCTTCCCAAACTCTATTTATGTTAAATATTACCTATGAGTTATTCTTGCTATAGACAAAACATAACCTAACTGTGACTGTATGATTTGTGAGCGTCAGTCTAGGAAAGCACCAACACAAATACGGACATTTGACACCATGCTAGTTGTACACACAAAATTTGAGAAAAAATGGATATGTTTGACGCAAATATTAAATTGTTCAATGTTGTCTTGCAGGAAATCAACAGTAGTGGTCTCAGCCTCTTTGGTCAAACAACTTCGAGACGAAACCGGTGCAGGGATGATGGACTGTAAACGGAAGGCGATCTTGAAAAGGCGCAAGCATATCTCAGGAAAAAGGGTCTCTCATACGCTGATAAGAAATCCGGAAGACTAGCAGCTGAAGGAAGAATCGGTACATACATTCACGATGCACATATTGGTGTTCTAATTGAAGTGAACTTTGAAACTGACTTTGTTGGAAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCACAGGTTCAGTTTGTATCTATTGAAGATATTCCCGAAACTATTTTGACGAAGGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGCTTCAAAACCCGAGAACATTAGAGAGAAAATTGTCGAGGGAAGAATCTCTAAGAGGTTAGGAGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAAGGATGACAGTTTTGTAGTGAAAGACTTGGTGAGGCAAACTATAGCTGCTATTGGAGAGAACATTAAAGTGCGGCGTTTTGTTCGGTTCACTATCGGAGAAACAGTTCAAAAAGAAACAGCCATACCAACGTAG
Protein sequence

>MS.gene69014.t1

MRMVPNCTMLAPQETPDDNVAAVSENNEIDASLSHEESLNKEVQEQTPVSAQVEDEAVAIASETNSNLSNSNGQTGITASDEGSSKATISPALVKQLRDETGAGMMDCKNALSESEGDIIKAQELLRKKGLASADKKATSATAEGRIGEIFKELVDDIAMQVAACPQVEYVVTENVPEEFVKKETEIEMQKEDLASKPEQIRSRIVEGRIRKRLEDLASLEQPYIKNDKVTVKDMVKQTIATIGENMKVTRFVRFNLGEGLEKKSQDFAAEVAAQTSAKPVTTPVKDEETEPKKSTVVVSASLVKQLRDETGAGMMDSEGRIGTYIHDAHIGVLIEVNFETDFVGRSEKFKELVDDLAMQVAACPQVQFVSIEDIPETILTKEKELEMQREDLASKPENIREKIVEGRISKRLGELALLEQPFIKDDSFVVKDLVRQTIAAIGENIKVRRFVRFTIGETVQKETAIPT