Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70630.t1 | XP_003601259.1 | 99.7 | 864 | 3 | 0 | 36 | 899 | 30 | 893 | 0.00E+00 | 1716.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70630.t1 | Q8L5Y9 | 86.0 | 865 | 117 | 4 | 38 | 899 | 37 | 900 | 0.0e+00 | 1493.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70630.t1 | G7J5F4 | 99.7 | 864 | 3 | 0 | 36 | 899 | 30 | 893 | 0.0e+00 | 1716.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049264 | MS.gene70630 | 0.836766 | 7.72E-57 | -1.69E-46 |
MS.gene049378 | MS.gene70630 | 0.83764 | 4.61E-57 | -1.69E-46 |
MS.gene050762 | MS.gene70630 | 0.808423 | 3.12E-50 | -1.69E-46 |
MS.gene050763 | MS.gene70630 | 0.807486 | 4.94E-50 | -1.69E-46 |
MS.gene050826 | MS.gene70630 | 0.800044 | 1.73E-48 | -1.69E-46 |
MS.gene052389 | MS.gene70630 | 0.8186 | 1.80E-52 | -1.69E-46 |
MS.gene053147 | MS.gene70630 | 0.815871 | 7.40E-52 | -1.69E-46 |
MS.gene054379 | MS.gene70630 | 0.809678 | 1.68E-50 | -1.69E-46 |
MS.gene054468 | MS.gene70630 | 0.843099 | 1.73E-58 | -1.69E-46 |
MS.gene054581 | MS.gene70630 | 0.805066 | 1.60E-49 | -1.69E-46 |
MS.gene054826 | MS.gene70630 | 0.880483 | 5.29E-70 | -1.69E-46 |
MS.gene054930 | MS.gene70630 | 0.802494 | 5.46E-49 | -1.69E-46 |
MS.gene056480 | MS.gene70630 | 0.80344 | 3.48E-49 | -1.69E-46 |
MS.gene05761 | MS.gene70630 | 0.801157 | 1.03E-48 | -1.69E-46 |
MS.gene057929 | MS.gene70630 | 0.823247 | 1.53E-53 | -1.69E-46 |
MS.gene058650 | MS.gene70630 | 0.806041 | 9.97E-50 | -1.69E-46 |
MS.gene058651 | MS.gene70630 | 0.840431 | 8.73E-58 | -1.69E-46 |
MS.gene05872 | MS.gene70630 | 0.826972 | 2.02E-54 | -1.69E-46 |
MS.gene060373 | MS.gene70630 | 0.814095 | 1.83E-51 | -1.69E-46 |
MS.gene06052 | MS.gene70630 | 0.807638 | 4.58E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70630.t1 | MTR_3g077740 | 98.776 | 899 | 5 | 1 | 1 | 899 | 1 | 893 | 0.0 | 1824 |
MS.gene70630.t1 | MTR_8g064850 | 61.463 | 410 | 148 | 3 | 51 | 459 | 1 | 401 | 2.19e-172 | 506 |
MS.gene70630.t1 | MTR_8g064850 | 62.751 | 349 | 120 | 3 | 51 | 398 | 1 | 340 | 1.55e-148 | 442 |
MS.gene70630.t1 | MTR_1g076720 | 36.269 | 386 | 201 | 10 | 525 | 896 | 11 | 365 | 2.08e-67 | 229 |
MS.gene70630.t1 | MTR_6g060550 | 35.825 | 388 | 205 | 11 | 525 | 899 | 10 | 366 | 3.00e-66 | 226 |
MS.gene70630.t1 | MTR_1g076730 | 36.829 | 391 | 203 | 10 | 519 | 895 | 158 | 518 | 3.10e-65 | 228 |
MS.gene70630.t1 | MTR_6g060550 | 33.724 | 341 | 183 | 10 | 525 | 852 | 10 | 320 | 4.99e-47 | 171 |
MS.gene70630.t1 | MTR_6g060550 | 33.721 | 344 | 185 | 10 | 525 | 855 | 51 | 364 | 5.35e-47 | 173 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70630.t1 | AT4G32180 | 85.682 | 873 | 119 | 5 | 32 | 899 | 29 | 900 | 0.0 | 1520 |
MS.gene70630.t1 | AT4G32180 | 86.093 | 755 | 100 | 4 | 32 | 782 | 29 | 782 | 0.0 | 1333 |
MS.gene70630.t1 | AT4G32180 | 86.093 | 755 | 100 | 4 | 32 | 782 | 29 | 782 | 0.0 | 1333 |
MS.gene70630.t1 | AT1G60440 | 62.245 | 392 | 124 | 6 | 72 | 461 | 3 | 372 | 1.43e-146 | 439 |
MS.gene70630.t1 | AT1G60440 | 70.790 | 291 | 83 | 2 | 172 | 461 | 6 | 295 | 4.88e-128 | 387 |
MS.gene70630.t1 | AT1G60440 | 55.243 | 391 | 114 | 6 | 72 | 461 | 3 | 333 | 3.15e-119 | 366 |
MS.gene70630.t1 | AT2G17320 | 37.602 | 367 | 196 | 10 | 531 | 895 | 21 | 356 | 9.66e-70 | 236 |
MS.gene70630.t1 | AT4G35360 | 38.764 | 356 | 185 | 10 | 542 | 895 | 38 | 362 | 3.24e-69 | 234 |
MS.gene70630.t1 | AT4G35360 | 38.764 | 356 | 185 | 10 | 542 | 895 | 38 | 362 | 3.24e-69 | 234 |
MS.gene70630.t1 | AT2G17340 | 37.772 | 368 | 188 | 10 | 530 | 895 | 34 | 362 | 1.90e-68 | 232 |
MS.gene70630.t1 | AT2G17320 | 37.861 | 346 | 183 | 9 | 531 | 874 | 21 | 336 | 4.47e-64 | 219 |
MS.gene70630.t1 | AT4G35360 | 41.608 | 286 | 137 | 7 | 611 | 895 | 9 | 265 | 7.21e-63 | 214 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACAACCATCCTTACAATTT+TGG | 0.057026 | 3.1:-63891143 | None:intergenic |
CAATTTGAACAAACTCTTTC+TGG | 0.085671 | 3.1:-63888742 | None:intergenic |
TAGCTCTATTATCTCCTTTC+TGG | 0.143633 | 3.1:-63889132 | None:intergenic |
TATAGCATTGTGACATTCTA+AGG | 0.194825 | 3.1:+63896242 | MS.gene70630:intron |
TTTGCGACATGAAGGATTTC+TGG | 0.197061 | 3.1:+63890017 | MS.gene70630:CDS |
TCCACTATTGCTTCAAGTTT+TGG | 0.201193 | 3.1:+63889378 | MS.gene70630:CDS |
GTGCTATTTGCAGATAATTT+TGG | 0.221515 | 3.1:+63896522 | MS.gene70630:intron |
GAAGGATTTCTGGGAGCTTT+AGG | 0.237803 | 3.1:+63890027 | MS.gene70630:CDS |
GATAAGGGAACAAATCATTT+TGG | 0.246674 | 3.1:-63888766 | None:intergenic |
TTGGCTGAAAAGTTGATTAA+AGG | 0.257846 | 3.1:+63897246 | MS.gene70630:CDS |
TCTCATCTCGCTCTTGATAT+TGG | 0.262842 | 3.1:+63886333 | MS.gene70630:CDS |
TTACTGTTTGTTGATAATTC+AGG | 0.264371 | 3.1:+63894549 | MS.gene70630:CDS |
TCAGGTGCTGACATTGTTCT+AGG | 0.266086 | 3.1:+63894567 | MS.gene70630:CDS |
AGGAGAAGCTTTCCTATTCT+TGG | 0.278927 | 3.1:+63887342 | MS.gene70630:CDS |
TGGTGGTTTGGATTATTCTA+AGG | 0.289539 | 3.1:+63889180 | MS.gene70630:CDS |
ACTCAAAGTTACCTTAATTA+TGG | 0.294989 | 3.1:-63887643 | None:intergenic |
CCTCTGCTTTATACTTCTAT+AGG | 0.299214 | 3.1:-63893525 | None:intergenic |
ATGTTGGTGGTGGTACTTAT+TGG | 0.301273 | 3.1:+63888969 | MS.gene70630:CDS |
ATGCTTGTTGGGGACATTTA+TGG | 0.301696 | 3.1:+63889160 | MS.gene70630:CDS |
TGTTGGTGGTGGTACTTATT+GGG | 0.303285 | 3.1:+63888970 | MS.gene70630:CDS |
GCCAATCAGACGATGATAAA+AGG | 0.305514 | 3.1:+63887277 | MS.gene70630:CDS |
TAAATACAGTATGGCTGATT+TGG | 0.309991 | 3.1:+63886089 | None:intergenic |
CCCTTGATGGTTGTTGAGAA+TGG | 0.311987 | 3.1:+63896343 | MS.gene70630:CDS |
AAAAGCATCACCCCTTCTTT+TGG | 0.318392 | 3.1:-63892657 | None:intergenic |
GTTAGGCTTGGCCAATCTAT+TGG | 0.318807 | 3.1:+63893460 | MS.gene70630:CDS |
TGTATCTTGCCACCAGTATA+TGG | 0.319902 | 3.1:-63890129 | None:intergenic |
TGGGGACATTTATGGTGGTT+TGG | 0.324370 | 3.1:+63889168 | MS.gene70630:CDS |
TTTCATTTGCTGTTCAATAC+TGG | 0.329419 | 3.1:+63889868 | MS.gene70630:CDS |
GGGAAGTTTGAGAGGGTTAG+TGG | 0.335778 | 3.1:+63888941 | MS.gene70630:CDS |
TGATCGAAATGCCATAATTA+AGG | 0.338567 | 3.1:+63887632 | MS.gene70630:CDS |
CTTCTAGTTAATGTTGGTTC+CGG | 0.339897 | 3.1:+63888788 | MS.gene70630:CDS |
AGGAGCAAATTTCTTGCTTA+AGG | 0.343687 | 3.1:+63888133 | MS.gene70630:CDS |
CACTTTGTCAAATTTGAAAC+GGG | 0.349017 | 3.1:+63887375 | MS.gene70630:CDS |
CTCTTCAAAGAGAGAATGTT+AGG | 0.349289 | 3.1:+63894489 | MS.gene70630:CDS |
GCAGCCTCAGCTACAATATC+AGG | 0.349938 | 3.1:-63895281 | None:intergenic |
TTCATCTTCGGTCCCCTTGA+TGG | 0.350155 | 3.1:+63896330 | MS.gene70630:CDS |
CTTGAACTTGATCTATGTAT+TGG | 0.350994 | 3.1:-63886219 | None:intergenic |
AAACATTGAAGGAGCGATTA+GGG | 0.351661 | 3.1:+63887304 | MS.gene70630:CDS |
TAGGGCTTTCTAATGGTAAC+AGG | 0.355069 | 3.1:+63887322 | MS.gene70630:CDS |
TTCCCTCATTTCCAATAGAT+TGG | 0.358243 | 3.1:-63893471 | None:intergenic |
ACTCCTGTTGCTGGAACTAC+TGG | 0.372736 | 3.1:+63890999 | MS.gene70630:CDS |
AGAGAGAGTGATATGTCTTC+AGG | 0.373424 | 3.1:-63889441 | None:intergenic |
TTCTATAGGCATCAACAAAC+TGG | 0.374707 | 3.1:-63893511 | None:intergenic |
GTGCCGATGACTCCTGTTGC+TGG | 0.376588 | 3.1:+63890990 | MS.gene70630:CDS |
AAAACATTGAAGGAGCGATT+AGG | 0.380222 | 3.1:+63887303 | MS.gene70630:CDS |
CCTTCTGCATACGGCAAGTT+AGG | 0.380263 | 3.1:+63893443 | MS.gene70630:CDS |
GAGCTATCGACATGCTTGTT+GGG | 0.380873 | 3.1:+63889149 | MS.gene70630:CDS |
CACCAAGTCTTTCTTTGAAA+AGG | 0.381637 | 3.1:-63888070 | None:intergenic |
GTTTGTAGAACTTGATAGTA+TGG | 0.382267 | 3.1:+63893689 | MS.gene70630:CDS |
TGCTGCAAAAGACGCCGATT+TGG | 0.388650 | 3.1:+63896417 | MS.gene70630:CDS |
GTTTAAGTGTGATGCTTTGA+AGG | 0.388883 | 3.1:+63896585 | MS.gene70630:CDS |
TGGTGGTACTTATTGGGGAC+TGG | 0.395806 | 3.1:+63888976 | MS.gene70630:CDS |
ATTTGCTTACTCTAATTCAC+TGG | 0.397587 | 3.1:-63891618 | None:intergenic |
CCGATGGGTGCTCCATATAC+TGG | 0.398412 | 3.1:+63890117 | MS.gene70630:CDS |
TTTGGAAGTGTTTCCGTTGT+TGG | 0.401244 | 3.1:+63891115 | MS.gene70630:CDS |
TGTTCTAGGGATGCTTCCTC+TGG | 0.402559 | 3.1:+63894581 | MS.gene70630:CDS |
AAGACAGGTCAGCTCGGAAT+TGG | 0.403885 | 3.1:+63896390 | MS.gene70630:CDS |
CCATGTGTGTGAAAGCTTCA+TGG | 0.404252 | 3.1:-63888715 | None:intergenic |
TTTATTTGTCATAGGTTGAT+GGG | 0.404451 | 3.1:+63888915 | MS.gene70630:intron |
CTTCCAAAGTTGGTACTAGA+TGG | 0.406132 | 3.1:-63891100 | None:intergenic |
TCCAAAACTTGAAGCAATAG+TGG | 0.413680 | 3.1:-63889379 | None:intergenic |
CCAACATTAACTAGAAGATA+AGG | 0.421746 | 3.1:-63888782 | None:intergenic |
TTGTCATAGGTTGATGGGGA+TGG | 0.422373 | 3.1:+63888920 | MS.gene70630:intron |
CATCGCCTGGGCTTCTCCAT+TGG | 0.428278 | 3.1:-63889992 | None:intergenic |
TTGCGACATGAAGGATTTCT+GGG | 0.430140 | 3.1:+63890018 | MS.gene70630:CDS |
CCTTATCTTCTAGTTAATGT+TGG | 0.434063 | 3.1:+63888782 | MS.gene70630:CDS |
ACTACCTTGTCCACAAGATC+TGG | 0.434369 | 3.1:-63891752 | None:intergenic |
TCTGCAAGATCGATTGTATT+GGG | 0.438407 | 3.1:-63891593 | None:intergenic |
TGTCATAGGTTGATGGGGAT+GGG | 0.443864 | 3.1:+63888921 | MS.gene70630:intron |
CTAAGGCGAGCTGCTGAAGC+TGG | 0.448195 | 3.1:+63896259 | MS.gene70630:CDS |
AGTCCAGTAGTTCCAGCAAC+AGG | 0.450308 | 3.1:-63891002 | None:intergenic |
CCTTGATGGTTGTTGAGAAT+GGG | 0.452403 | 3.1:+63896344 | MS.gene70630:CDS |
TTGCTGGAACTACTGGACTT+GGG | 0.454358 | 3.1:+63891006 | MS.gene70630:CDS |
TCACTTTGTCAAATTTGAAA+CGG | 0.458203 | 3.1:+63887374 | MS.gene70630:CDS |
ATCTGCAAGATCGATTGTAT+TGG | 0.462851 | 3.1:-63891594 | None:intergenic |
AAGCAATAGTGGAAGCTGAT+AGG | 0.466489 | 3.1:-63889368 | None:intergenic |
GAGCGATTAGGGCTTTCTAA+TGG | 0.468080 | 3.1:+63887315 | MS.gene70630:CDS |
TTTGAAGTCCCTCTGTCAAA+AGG | 0.469850 | 3.1:+63891032 | MS.gene70630:CDS |
CCCATTCTCAACAACCATCA+AGG | 0.471436 | 3.1:-63896344 | None:intergenic |
ATCATCAGTTCCACCTTCAC+TGG | 0.473649 | 3.1:-63892633 | None:intergenic |
AACAGTAAAGCTCTTCTATG+AGG | 0.474599 | 3.1:-63894534 | None:intergenic |
CTCAAAAGAAAATTCATCTT+CGG | 0.475886 | 3.1:+63896318 | MS.gene70630:CDS |
TGAAGCCTTCCACCAAGAAT+AGG | 0.477732 | 3.1:-63887354 | None:intergenic |
AGACTGCTTACTCTAATTGA+AGG | 0.478438 | 3.1:+63894231 | MS.gene70630:CDS |
GGTGGTACTTATTGGGGACT+GGG | 0.480437 | 3.1:+63888977 | MS.gene70630:CDS |
AGATTGATTAGGCAACAAAA+TGG | 0.482598 | 3.1:-63886301 | None:intergenic |
GTTGCTGGAACTACTGGACT+TGG | 0.485530 | 3.1:+63891005 | MS.gene70630:CDS |
TAGGGATGCTTCCTCTGGCT+AGG | 0.486511 | 3.1:+63894586 | MS.gene70630:CDS |
TGCTGGAACTACTGGACTTG+GGG | 0.488456 | 3.1:+63891007 | MS.gene70630:CDS |
AATGAGGGAAGAGTGCTTGA+GGG | 0.489682 | 3.1:+63893484 | MS.gene70630:CDS |
AGGTTCCAATGCAGATTTCG+TGG | 0.491662 | 3.1:+63890925 | MS.gene70630:intron |
GAATGATCCTCCTACCAAAT+CGG | 0.494985 | 3.1:-63896431 | None:intergenic |
TTGCTTGAGCTGAGCCAGAA+AGG | 0.495131 | 3.1:+63889118 | MS.gene70630:CDS |
CATGGAAGCTTTCAACTAGC+AGG | 0.496010 | 3.1:-63897300 | None:intergenic |
TAAAATGCGCAGACCTTGGC+GGG | 0.497032 | 3.1:+63894350 | MS.gene70630:CDS |
TGCATACGGCAAGTTAGGCT+TGG | 0.498634 | 3.1:+63893448 | MS.gene70630:CDS |
AGAGCTATCGACATGCTTGT+TGG | 0.498893 | 3.1:+63889148 | MS.gene70630:CDS |
AGGGTTAGTGGGACAAATGT+TGG | 0.499572 | 3.1:+63888953 | MS.gene70630:CDS |
CAACATTAACTAGAAGATAA+GGG | 0.500111 | 3.1:-63888781 | None:intergenic |
TGTGTTGATCTCTATCATAA+AGG | 0.501529 | 3.1:+63894294 | MS.gene70630:CDS |
TCTCCATCTAGTACCAACTT+TGG | 0.502815 | 3.1:+63891097 | MS.gene70630:CDS |
CAATACATAGATCAAGTTCA+AGG | 0.505465 | 3.1:+63886220 | MS.gene70630:CDS |
AACGGAAACACTTCCAAAGT+TGG | 0.505796 | 3.1:-63891110 | None:intergenic |
AAAGAGAGAATGTTAGGGAC+CGG | 0.506027 | 3.1:+63894495 | MS.gene70630:CDS |
ATGGGGATGGGAAGTTTGAG+AGG | 0.506268 | 3.1:+63888933 | MS.gene70630:CDS |
AGGGATGCTTCCTCTGGCTA+GGG | 0.513859 | 3.1:+63894587 | MS.gene70630:CDS |
TCCAATGCAGATTTCGTGGA+TGG | 0.514701 | 3.1:+63890929 | MS.gene70630:intron |
GCAATAAAATGCGCAGACCT+TGG | 0.515821 | 3.1:+63894346 | MS.gene70630:CDS |
GAACTGATGATGCCAAAAGA+AGG | 0.520146 | 3.1:+63892645 | MS.gene70630:CDS |
TGGCCAATCTATTGGAAATG+AGG | 0.520415 | 3.1:+63893468 | MS.gene70630:CDS |
CATCTCGCTCTTGATATTGG+AGG | 0.522421 | 3.1:+63886336 | MS.gene70630:CDS |
ATGGAGGAGCCTTCTGCATA+CGG | 0.524279 | 3.1:+63893434 | MS.gene70630:CDS |
GTCATTATTACCTTGACAAG+TGG | 0.524525 | 3.1:-63892697 | None:intergenic |
TTCCGGTGTTAGTATGATCA+AGG | 0.525075 | 3.1:+63888805 | MS.gene70630:CDS |
AACAACAACATGGCTCCTAC+AGG | 0.525280 | 3.1:+63886192 | MS.gene70630:CDS |
ACATATCACTCTCTCTTCTA+CGG | 0.529289 | 3.1:+63889448 | MS.gene70630:CDS |
CCATGAAGCTTTCACACACA+TGG | 0.530882 | 3.1:+63888715 | MS.gene70630:CDS |
AAGTCTTTCTTTGAAAAGGT+CGG | 0.531063 | 3.1:-63888066 | None:intergenic |
GGCCAATCTATTGGAAATGA+GGG | 0.531273 | 3.1:+63893469 | MS.gene70630:CDS |
ACATCAAATGAATAGGTTGA+TGG | 0.531786 | 3.1:+63893415 | MS.gene70630:intron |
GTTAGTTGAAAGGTTTCCGA+TGG | 0.532451 | 3.1:+63890101 | MS.gene70630:CDS |
ACAGTAAAGCTCTTCTATGA+GGG | 0.532783 | 3.1:-63894533 | None:intergenic |
TCAAGTTCTACAAACAAGTC+AGG | 0.533102 | 3.1:-63893681 | None:intergenic |
TAAAAGGAAGAAAACATTGA+AGG | 0.533223 | 3.1:+63887293 | MS.gene70630:CDS |
AGCAAATGAAAGAGTGTCCA+TGG | 0.533459 | 3.1:-63889856 | None:intergenic |
AAGATACATGGCCCACCACT+TGG | 0.534164 | 3.1:+63890144 | MS.gene70630:CDS |
GCAACAGGAGTCATCGGCAC+AGG | 0.535483 | 3.1:-63890987 | None:intergenic |
GCTTTCCTATTCTTGGTGGA+AGG | 0.535678 | 3.1:+63887349 | MS.gene70630:CDS |
TATACTGGTGGCAAGATACA+TGG | 0.537423 | 3.1:+63890132 | MS.gene70630:CDS |
GTGATGAAGGCTACTGGAGG+TGG | 0.539097 | 3.1:+63888029 | MS.gene70630:intron |
TGTGGATAATAGGGAAAATG+AGG | 0.541454 | 3.1:+63893641 | MS.gene70630:intron |
TGGTGCATCAGTTAGTTGAA+AGG | 0.545222 | 3.1:+63890091 | MS.gene70630:CDS |
TATTGTAGCTGAGGCTGCCA+AGG | 0.545712 | 3.1:+63895286 | MS.gene70630:CDS |
ATAAAATGCGCAGACCTTGG+CGG | 0.549032 | 3.1:+63894349 | MS.gene70630:CDS |
AAATGAGGGAAGAGTGCTTG+AGG | 0.549228 | 3.1:+63893483 | MS.gene70630:CDS |
TTATTTGTCATAGGTTGATG+GGG | 0.552120 | 3.1:+63888916 | MS.gene70630:intron |
AGAAGCTTTCCTATTCTTGG+TGG | 0.558179 | 3.1:+63887345 | MS.gene70630:CDS |
GGAAGTTTGAGAGGGTTAGT+GGG | 0.558531 | 3.1:+63888942 | MS.gene70630:CDS |
AAGAGAGAATGTTAGGGACC+GGG | 0.558973 | 3.1:+63894496 | MS.gene70630:CDS |
GGCAGGATCTCTGATAAAGT+TGG | 0.559378 | 3.1:+63887233 | MS.gene70630:intron |
TCATTATTACCTTGACAAGT+GGG | 0.560771 | 3.1:-63892696 | None:intergenic |
TCATTCAAATCGCCAAGTGG+TGG | 0.560907 | 3.1:-63890156 | None:intergenic |
TAGGTCCAATGGAGAAGCCC+AGG | 0.563858 | 3.1:+63889987 | MS.gene70630:intron |
CAGGTGCTGACATTGTTCTA+GGG | 0.564205 | 3.1:+63894568 | MS.gene70630:CDS |
ACCTGTCTTAAGTCTATACA+TGG | 0.565218 | 3.1:-63896376 | None:intergenic |
GATTTCATACAACATCGGTC+AGG | 0.567822 | 3.1:+63889473 | MS.gene70630:CDS |
TCTTGGTATTGACGAATCTG+AGG | 0.572088 | 3.1:+63886140 | MS.gene70630:CDS |
TGATTAGGCAACAAAATGGT+GGG | 0.574093 | 3.1:-63886297 | None:intergenic |
GACAAATCATCAGATTGATT+AGG | 0.574243 | 3.1:-63886312 | None:intergenic |
TTTGCTTACTCTAATTCACT+GGG | 0.574456 | 3.1:-63891617 | None:intergenic |
CCATTCTCAACAACCATCAA+GGG | 0.574628 | 3.1:-63896343 | None:intergenic |
CACCTTGATCATACTAACAC+CGG | 0.575151 | 3.1:-63888807 | None:intergenic |
CAGGGGTCATGCTTATACCA+TGG | 0.575740 | 3.1:+63889839 | MS.gene70630:CDS |
GCTTCCTGATATTGTAGCTG+AGG | 0.576697 | 3.1:+63895277 | MS.gene70630:CDS |
GCAGTCACATCATTCAAAGC+AGG | 0.576932 | 3.1:-63895248 | None:intergenic |
TTGATTAGGCAACAAAATGG+TGG | 0.577087 | 3.1:-63886298 | None:intergenic |
AGGCGAGCTGCTGAAGCTGG+AGG | 0.578900 | 3.1:+63896262 | MS.gene70630:CDS |
CAGGCTGTTGCCAGTGAAGG+TGG | 0.580036 | 3.1:+63892623 | MS.gene70630:intron |
CCTAACTTGCCGTATGCAGA+AGG | 0.581095 | 3.1:-63893443 | None:intergenic |
AGAGCACTTACCAGATCTTG+TGG | 0.584881 | 3.1:+63891742 | MS.gene70630:CDS |
CATTCAAATCGCCAAGTGGT+GGG | 0.589143 | 3.1:-63890155 | None:intergenic |
ACTTGGCGATTTGAATGAGA+AGG | 0.589246 | 3.1:+63890161 | MS.gene70630:CDS |
GACTGTTAACAAAGTGCAAG+AGG | 0.589787 | 3.1:+63889002 | MS.gene70630:CDS |
AGAACTTGATAGTATGGATG+AGG | 0.590772 | 3.1:+63893695 | MS.gene70630:CDS |
TTAATTCCACCTACCCGCCA+AGG | 0.591741 | 3.1:-63894363 | None:intergenic |
GTTCCAGCAACAGGAGTCAT+CGG | 0.593671 | 3.1:-63890993 | None:intergenic |
CTTGTTGGGGACATTTATGG+TGG | 0.594785 | 3.1:+63889163 | MS.gene70630:CDS |
TCTTCAAAGAGAGAATGTTA+GGG | 0.595349 | 3.1:+63894490 | MS.gene70630:CDS |
CTTACCAGATCTTGTGGACA+AGG | 0.596291 | 3.1:+63891748 | MS.gene70630:CDS |
ATAGAGATCAACACATGCAC+GGG | 0.596357 | 3.1:-63894286 | None:intergenic |
GCTAGGGAGCTCCTCCGTCG+TGG | 0.596909 | 3.1:+63894603 | MS.gene70630:CDS |
GAAGCTTTCAACTAGCAGGC+TGG | 0.597201 | 3.1:-63897296 | None:intergenic |
GAAATGAATTGTCTTGTGGC+AGG | 0.597674 | 3.1:+63888113 | MS.gene70630:CDS |
GTTGGTGGTGGTACTTATTG+GGG | 0.602827 | 3.1:+63888971 | MS.gene70630:CDS |
TCCATGTATAGACTTAAGAC+AGG | 0.602929 | 3.1:+63896375 | MS.gene70630:CDS |
GCATGGTTTAGATGACCTCA+TGG | 0.603918 | 3.1:+63890071 | MS.gene70630:CDS |
TGGGGATGGGAAGTTTGAGA+GGG | 0.604314 | 3.1:+63888934 | MS.gene70630:CDS |
AGTGGGACAAATGTTGGTGG+TGG | 0.605265 | 3.1:+63888959 | MS.gene70630:CDS |
AGACTTAAGACAGGTCAGCT+CGG | 0.605465 | 3.1:+63896384 | MS.gene70630:CDS |
TGAAATTCAATCTAATGTTG+AGG | 0.610246 | 3.1:+63886266 | MS.gene70630:CDS |
ATGGTTGTTGAGAATGGGTG+CGG | 0.610452 | 3.1:+63896349 | MS.gene70630:CDS |
AGCTATCGACATGCTTGTTG+GGG | 0.611783 | 3.1:+63889150 | MS.gene70630:CDS |
GTTAGTGGGACAAATGTTGG+TGG | 0.614321 | 3.1:+63888956 | MS.gene70630:CDS |
CACACTTAAACTGAGCATAG+AGG | 0.616056 | 3.1:-63896573 | None:intergenic |
CTATGTATTGGATTGCCTGT+AGG | 0.616133 | 3.1:-63886207 | None:intergenic |
GCTGGAACTACTGGACTTGG+GGG | 0.616473 | 3.1:+63891008 | MS.gene70630:CDS |
GATAGAGATCAACACATGCA+CGG | 0.617200 | 3.1:-63894287 | None:intergenic |
CTTGGTATTGACGAATCTGA+GGG | 0.620204 | 3.1:+63886141 | MS.gene70630:CDS |
TTAGTTGAAAGGTTTCCGAT+GGG | 0.620541 | 3.1:+63890102 | MS.gene70630:CDS |
TTTGAATGATGTGACTGCAA+TGG | 0.622671 | 3.1:+63895253 | MS.gene70630:CDS |
GATGCGAGTGCTCTAAATGT+TGG | 0.622823 | 3.1:+63891071 | MS.gene70630:CDS |
AACTGATGATGCCAAAAGAA+GGG | 0.624687 | 3.1:+63892646 | MS.gene70630:CDS |
AGAGAGAATGTTAGGGACCG+GGG | 0.628373 | 3.1:+63894497 | MS.gene70630:CDS |
ATGGGTGCTCCATATACTGG+TGG | 0.639105 | 3.1:+63890120 | MS.gene70630:CDS |
CCAGTATATGGAGCACCCAT+CGG | 0.641614 | 3.1:-63890117 | None:intergenic |
TTTATGAGTTACGAAAAGCA+TGG | 0.645096 | 3.1:+63890054 | MS.gene70630:CDS |
GCTTTGCTAACATCAAGTTG+AGG | 0.645930 | 3.1:-63886243 | None:intergenic |
TCAAATGAATAGGTTGATGG+AGG | 0.647737 | 3.1:+63893418 | MS.gene70630:intron |
GAAGCTTTCACACACATGGA+GGG | 0.648007 | 3.1:+63888719 | MS.gene70630:CDS |
CCTATAGAAGTATAAAGCAG+AGG | 0.649593 | 3.1:+63893525 | MS.gene70630:CDS |
CAGTAAAGCTCTTCTATGAG+GGG | 0.649740 | 3.1:-63894532 | None:intergenic |
ATGCAGGCTGTTGCCAGTGA+AGG | 0.652213 | 3.1:+63892620 | MS.gene70630:intron |
AGATGAAATGAATTGTCTTG+TGG | 0.660802 | 3.1:+63888109 | MS.gene70630:CDS |
CGGAGGAGCTCCCTAGCCAG+AGG | 0.661956 | 3.1:-63894597 | None:intergenic |
AGTAAAGCTCTTCTATGAGG+GGG | 0.666765 | 3.1:-63894531 | None:intergenic |
CGGATGATTTCATACAACAT+CGG | 0.672578 | 3.1:+63889468 | MS.gene70630:CDS |
TGAAGCTTTCACACACATGG+AGG | 0.674064 | 3.1:+63888718 | MS.gene70630:CDS |
TCACTTCAGTTCCACGACGG+AGG | 0.674137 | 3.1:-63894614 | None:intergenic |
TTCTCATTCAAATCGCCAAG+TGG | 0.675820 | 3.1:-63890159 | None:intergenic |
CATTCTCAACAACCATCAAG+GGG | 0.678004 | 3.1:-63896342 | None:intergenic |
ACTGATGATGCCAAAAGAAG+GGG | 0.688906 | 3.1:+63892647 | MS.gene70630:CDS |
GTCACGTTACTCAGATACTG+AGG | 0.699781 | 3.1:+63887608 | MS.gene70630:CDS |
AACTCACTTCAGTTCCACGA+CGG | 0.704303 | 3.1:-63894617 | None:intergenic |
CAACTAACTGATGCACCATG+AGG | 0.704343 | 3.1:-63890086 | None:intergenic |
TTTGTGATGAAGGCTACTGG+AGG | 0.733686 | 3.1:+63888026 | MS.gene70630:intron |
CATTCAAAGCAGCTTCACCG+TGG | 0.733695 | 3.1:+63887426 | MS.gene70630:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 63886099 | 63897311 | 63886099 | ID=MS.gene70630 |
chr3.1 | mRNA | 63886099 | 63897311 | 63886099 | ID=MS.gene70630.t1;Parent=MS.gene70630 |
chr3.1 | exon | 63886099 | 63886357 | 63886099 | ID=MS.gene70630.t1.exon1;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63886099 | 63886357 | 63886099 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63887238 | 63887447 | 63887238 | ID=MS.gene70630.t1.exon2;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63887238 | 63887447 | 63887238 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63887601 | 63887653 | 63887601 | ID=MS.gene70630.t1.exon3;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63887601 | 63887653 | 63887601 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63888038 | 63888154 | 63888038 | ID=MS.gene70630.t1.exon4;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63888038 | 63888154 | 63888038 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63888707 | 63888826 | 63888707 | ID=MS.gene70630.t1.exon5;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63888707 | 63888826 | 63888707 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63888929 | 63889023 | 63888929 | ID=MS.gene70630.t1.exon6;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63888929 | 63889023 | 63888929 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63889108 | 63889201 | 63889108 | ID=MS.gene70630.t1.exon7;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63889108 | 63889201 | 63889108 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63889363 | 63889494 | 63889363 | ID=MS.gene70630.t1.exon8;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63889363 | 63889494 | 63889363 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63889777 | 63889889 | 63889777 | ID=MS.gene70630.t1.exon9;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63889777 | 63889889 | 63889777 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63889990 | 63890182 | 63889990 | ID=MS.gene70630.t1.exon10;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63889990 | 63890182 | 63889990 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63890939 | 63891150 | 63890939 | ID=MS.gene70630.t1.exon11;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63890939 | 63891150 | 63890939 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63891586 | 63891630 | 63891586 | ID=MS.gene70630.t1.exon12;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63891586 | 63891630 | 63891586 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63891721 | 63891769 | 63891721 | ID=MS.gene70630.t1.exon13;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63891721 | 63891769 | 63891721 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63892626 | 63892708 | 63892626 | ID=MS.gene70630.t1.exon14;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63892626 | 63892708 | 63892626 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63893430 | 63893546 | 63893430 | ID=MS.gene70630.t1.exon15;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63893430 | 63893546 | 63893430 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63893653 | 63893716 | 63893653 | ID=MS.gene70630.t1.exon16;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63893653 | 63893716 | 63893653 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63894225 | 63894371 | 63894225 | ID=MS.gene70630.t1.exon17;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63894225 | 63894371 | 63894225 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63894474 | 63894632 | 63894474 | ID=MS.gene70630.t1.exon18;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63894474 | 63894632 | 63894474 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63895224 | 63895307 | 63895224 | ID=MS.gene70630.t1.exon19;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63895224 | 63895307 | 63895224 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63896247 | 63896438 | 63896247 | ID=MS.gene70630.t1.exon20;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63896247 | 63896438 | 63896247 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63896535 | 63896606 | 63896535 | ID=MS.gene70630.t1.exon21;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63896535 | 63896606 | 63896535 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
chr3.1 | exon | 63897222 | 63897311 | 63897222 | ID=MS.gene70630.t1.exon22;Parent=MS.gene70630.t1 |
chr3.1 | CDS | 63897222 | 63897311 | 63897222 | ID=cds.MS.gene70630.t1;Parent=MS.gene70630.t1 |
Gene Sequence |
Protein sequence |