Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71468.t1 | XP_003590763.1 | 97 | 600 | 17 | 1 | 1 | 599 | 70 | 669 | 0.00E+00 | 1179.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71468.t1 | Q9SS87 | 30.4 | 626 | 371 | 19 | 25 | 591 | 110 | 729 | 3.2e-75 | 284.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71468.t1 | E2FKJ5 | 97.0 | 600 | 17 | 1 | 1 | 599 | 70 | 669 | 0.0e+00 | 1179.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050780 | MS.gene71468 | 0.801719 | 7.89E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene71468 | 0.807712 | 4.42E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene71468 | 0.803226 | 3.86E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene71468 | 0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene71468 | 0.803199 | 3.91E-49 | -1.69E-46 |
| MS.gene053641 | MS.gene71468 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene71468 | 0.818306 | 2.10E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene71468 | 0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene054596 | MS.gene71468 | 0.815661 | 8.25E-52 | -1.69E-46 |
| MS.gene05468 | MS.gene71468 | 0.835361 | 1.75E-56 | -1.69E-46 |
| MS.gene054775 | MS.gene71468 | 0.804031 | 2.63E-49 | -1.69E-46 |
| MS.gene054801 | MS.gene71468 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene71468 | 0.812954 | 3.27E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene71468 | 0.826946 | 2.05E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene71468 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene71468 | -0.819554 | 1.09E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene71468 | 0.821375 | 4.18E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene71468 | 0.83519 | 1.94E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71468.t1 | MTR_1g074990 | 97.000 | 600 | 17 | 1 | 1 | 599 | 70 | 669 | 0.0 | 1194 |
| MS.gene71468.t1 | MTR_1g075095 | 83.080 | 591 | 99 | 1 | 2 | 591 | 73 | 663 | 0.0 | 1014 |
| MS.gene71468.t1 | MTR_1g075030 | 82.492 | 594 | 101 | 2 | 1 | 591 | 70 | 663 | 0.0 | 1010 |
| MS.gene71468.t1 | MTR_1g075230 | 79.397 | 597 | 120 | 2 | 1 | 594 | 70 | 666 | 0.0 | 949 |
| MS.gene71468.t1 | MTR_1g074950 | 58.706 | 603 | 243 | 5 | 1 | 599 | 71 | 671 | 0.0 | 727 |
| MS.gene71468.t1 | MTR_1g040360 | 34.768 | 604 | 369 | 10 | 14 | 598 | 88 | 685 | 2.68e-124 | 382 |
| MS.gene71468.t1 | MTR_7g032660 | 34.112 | 642 | 369 | 16 | 1 | 591 | 73 | 711 | 3.39e-106 | 336 |
| MS.gene71468.t1 | MTR_3g075450 | 33.388 | 608 | 358 | 17 | 25 | 589 | 101 | 704 | 1.84e-93 | 302 |
| MS.gene71468.t1 | MTR_8g089660 | 32.739 | 617 | 359 | 20 | 24 | 590 | 93 | 703 | 1.57e-92 | 300 |
| MS.gene71468.t1 | MTR_1g075180 | 32.667 | 600 | 363 | 15 | 16 | 593 | 58 | 638 | 1.09e-91 | 296 |
| MS.gene71468.t1 | MTR_1g075170 | 30.882 | 612 | 372 | 16 | 11 | 593 | 80 | 669 | 2.67e-88 | 288 |
| MS.gene71468.t1 | MTR_1g075153 | 31.631 | 607 | 358 | 15 | 16 | 590 | 81 | 662 | 2.26e-87 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71468.t1 | AT3G01680 | 30.317 | 630 | 368 | 20 | 24 | 591 | 109 | 729 | 5.34e-88 | 288 |
| MS.gene71468.t1 | AT3G01670 | 26.448 | 639 | 390 | 18 | 17 | 589 | 196 | 820 | 1.95e-53 | 196 |
| MS.gene71468.t1 | AT3G01670 | 26.448 | 639 | 390 | 18 | 17 | 589 | 220 | 844 | 2.06e-53 | 196 |
| MS.gene71468.t1 | AT1G67790 | 24.419 | 602 | 398 | 18 | 27 | 587 | 79 | 664 | 1.92e-42 | 162 |
Find 134 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGAGTATGGAGATTTC+TGG | 0.121043 | 1.3:+53562570 | MS.gene71468:CDS |
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1.3:-53563579 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152492 | 1.3:+53563310 | MS.gene71468:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1.3:+53562685 | MS.gene71468:CDS |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1.3:-53563724 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1.3:-53563868 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1.3:+53563711 | MS.gene71468:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1.3:+53562825 | MS.gene71468:CDS |
| ACATTGATATAAATATTAAA+TGG | 0.221988 | 1.3:+53563928 | MS.gene71468:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1.3:+53564075 | MS.gene71468:CDS |
| CAAATGTGGTTAACAACTTT+TGG | 0.237806 | 1.3:+53564217 | MS.gene71468:CDS |
| CATTGACCTTATCCATATTA+TGG | 0.238930 | 1.3:-53564608 | None:intergenic |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1.3:-53563874 | None:intergenic |
| AGGCAGAATTTATCTCATTT+TGG | 0.249523 | 1.3:+53563060 | MS.gene71468:CDS |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1.3:-53562627 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1.3:+53563298 | MS.gene71468:CDS |
| CCATCATAGATGGGAGCTTT+TGG | 0.260268 | 1.3:-53563356 | None:intergenic |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1.3:+53563824 | MS.gene71468:CDS |
| CTACAAGTGTTGCCATAATA+TGG | 0.289104 | 1.3:+53564596 | MS.gene71468:CDS |
| CAAAAGTTGTTAACCACATT+TGG | 0.289864 | 1.3:-53564216 | None:intergenic |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1.3:-53563554 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1.3:+53563823 | MS.gene71468:CDS |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1.3:+53562799 | MS.gene71468:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1.3:+53562826 | MS.gene71468:CDS |
| CTTGAGATTCCTAATGTTGC+TGG | 0.329358 | 1.3:+53564513 | MS.gene71468:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1.3:-53563827 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1.3:-53562830 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.362097 | 1.3:+53562513 | MS.gene71468:CDS |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1.3:+53563834 | MS.gene71468:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.364613 | 1.3:-53564543 | None:intergenic |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1.3:-53563861 | None:intergenic |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1.3:-53564191 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1.3:-53563578 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1.3:-53564561 | None:intergenic |
| TTTAGTCGAACCATCATAGA+TGG | 0.384861 | 1.3:-53563366 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1.3:-53563723 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1.3:+53563585 | MS.gene71468:CDS |
| AAAGATGTCGCAATCAATAA+AGG | 0.397602 | 1.3:+53564426 | MS.gene71468:CDS |
| GGACTCAACACAAGAAATAA+AGG | 0.400912 | 1.3:-53563774 | None:intergenic |
| TAAGGTCAATGGCGAGCATT+AGG | 0.411115 | 1.3:+53564620 | MS.gene71468:CDS |
| CTTTCTTACAAGAATGAGAC+TGG | 0.413501 | 1.3:+53564315 | MS.gene71468:CDS |
| ATTGTGACTTCTGTTGATCA+TGG | 0.431318 | 1.3:+53564363 | MS.gene71468:CDS |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1.3:+53563728 | MS.gene71468:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1.3:+53562617 | MS.gene71468:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1.3:-53562607 | None:intergenic |
| AACAAACACTGTTACACAAC+AGG | 0.447051 | 1.3:+53564281 | MS.gene71468:CDS |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1.3:+53563833 | MS.gene71468:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1.3:+53563524 | MS.gene71468:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1.3:-53563633 | None:intergenic |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1.3:+53563679 | MS.gene71468:CDS |
| AGAAGTCACAATAGACCCTT+TGG | 0.457140 | 1.3:-53564352 | None:intergenic |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1.3:-53564146 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1.3:-53562800 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1.3:+53560435 | None:intergenic |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1.3:+53562524 | MS.gene71468:CDS |
| CATTGATATAAATATTAAAT+GGG | 0.472794 | 1.3:+53563929 | MS.gene71468:CDS |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1.3:+53560427 | None:intergenic |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1.3:+53562742 | MS.gene71468:CDS |
| GGAGCTCAAGAATTTGATCA+AGG | 0.477807 | 1.3:+53562706 | MS.gene71468:CDS |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1.3:-53562517 | None:intergenic |
| TTGTAAGCTATTTCCTCACC+TGG | 0.482226 | 1.3:-53562470 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1.3:-53563917 | None:intergenic |
| AGAATTTGATCAAGGCAACT+TGG | 0.494238 | 1.3:+53562714 | MS.gene71468:CDS |
| CATAATATGGATAAGGTCAA+TGG | 0.494269 | 1.3:+53564609 | MS.gene71468:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1.3:+53563126 | MS.gene71468:CDS |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1.3:-53560462 | None:intergenic |
| ATCTTTCCATTTGTCAAACT+CGG | 0.509793 | 1.3:-53564409 | None:intergenic |
| GTGTTGCCATAATATGGATA+AGG | 0.513789 | 1.3:+53564602 | MS.gene71468:CDS |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1.3:-53563304 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1.3:+53563356 | MS.gene71468:CDS |
| CAGAGTATAACAAGTTACTC+AGG | 0.520550 | 1.3:+53563267 | MS.gene71468:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1.3:-53562812 | None:intergenic |
| CTGGACACTCGATAAAATCT+GGG | 0.524375 | 1.3:-53564542 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1.3:+53560444 | MS.gene71468:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1.3:+53563886 | MS.gene71468:CDS |
| CAGTGTCCGAGTTTGACAAA+TGG | 0.528291 | 1.3:+53564403 | MS.gene71468:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1.3:-53563634 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1.3:+53563902 | MS.gene71468:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1.3:+53564120 | MS.gene71468:CDS |
| CTGAGCAACAATTGCAACAA+TGG | 0.536652 | 1.3:-53562858 | None:intergenic |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1.3:-53562620 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1.3:-53562611 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.546119 | 1.3:-53563916 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1.3:+53562452 | MS.gene71468:intron |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1.3:+53564094 | MS.gene71468:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1.3:-53560481 | None:intergenic |
| TTGTGACTTCTGTTGATCAT+GGG | 0.554557 | 1.3:+53564364 | MS.gene71468:CDS |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1.3:+53564089 | MS.gene71468:CDS |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1.3:-53563305 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1.3:+53563094 | MS.gene71468:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1.3:+53563628 | MS.gene71468:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1.3:-53563860 | None:intergenic |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1.3:+53562514 | MS.gene71468:CDS |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1.3:-53564145 | None:intergenic |
| GCTTCAGGCTTCGAAAGTTG+AGG | 0.577864 | 1.3:-53562656 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.579885 | 1.3:+53564336 | MS.gene71468:CDS |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1.3:-53563611 | None:intergenic |
| CAGCAACATTAGGAATCTCA+AGG | 0.582036 | 1.3:-53564512 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1.3:-53563795 | None:intergenic |
| TGATGGTTCGACTAAAACAC+TGG | 0.587238 | 1.3:+53563373 | MS.gene71468:CDS |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1.3:+53563780 | MS.gene71468:CDS |
| TTAGTCGAACCATCATAGAT+GGG | 0.591512 | 1.3:-53563365 | None:intergenic |
| GCCAGAAATCTCCATACTCA+AGG | 0.592198 | 1.3:-53562571 | None:intergenic |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1.3:+53563620 | MS.gene71468:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1.3:+53563607 | MS.gene71468:CDS |
| GGTGGGCAATTGTAACCAAA+GGG | 0.598470 | 1.3:+53564337 | MS.gene71468:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1.3:+53562457 | MS.gene71468:CDS |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1.3:+53562772 | MS.gene71468:CDS |
| TTACAAGAATGAGACTGGGT+GGG | 0.613509 | 1.3:+53564320 | MS.gene71468:CDS |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1.3:+53563825 | MS.gene71468:CDS |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1.3:-53563303 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1.3:+53563887 | MS.gene71468:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1.3:+53560510 | MS.gene71468:CDS |
| CCAGAAATCTCCATACTCAA+GGG | 0.637724 | 1.3:-53562570 | None:intergenic |
| TTTCTTACAAGAATGAGACT+GGG | 0.638297 | 1.3:+53564316 | MS.gene71468:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1.3:+53564560 | MS.gene71468:CDS |
| CTTACAAGAATGAGACTGGG+TGG | 0.646290 | 1.3:+53564319 | MS.gene71468:CDS |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1.3:+53564203 | MS.gene71468:CDS |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1.3:+53563731 | MS.gene71468:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1.3:+53564078 | MS.gene71468:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1.3:-53560459 | None:intergenic |
| ATGATGGCAGATGTCATGCA+AGG | 0.660192 | 1.3:+53562445 | MS.gene71468:intron |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1.3:-53564160 | None:intergenic |
| ATTTAGAGAACATCATCACA+AGG | 0.662401 | 1.3:+53564461 | MS.gene71468:CDS |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1.3:-53563696 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1.3:-53562829 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1.3:+53563608 | MS.gene71468:CDS |
| TAATGAACACTTCCATTGTG+CGG | 0.679237 | 1.3:-53564572 | None:intergenic |
| AAGGTGAGAGCAAATATGAA+CGG | 0.680495 | 1.3:-53564493 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1.3:+53563623 | MS.gene71468:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1.3:+53563289 | MS.gene71468:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1.3:-53560478 | None:intergenic |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1.3:+53560430 | None:intergenic |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1.3:-53560499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATAATTTTATTTTAAA+TGG | - | chr1.3:53562045-53562064 | None:intergenic | 0.0% |
| !! | ACATTGATATAAATATTAAA+TGG | + | chr1.3:53563928-53563947 | MS.gene71468:CDS | 10.0% |
| !! | CATTGATATAAATATTAAAT+GGG | + | chr1.3:53563929-53563948 | MS.gene71468:CDS | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr1.3:53561494-53561513 | MS.gene71468:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | + | chr1.3:53563470-53563489 | MS.gene71468:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTGTA+GGG | + | chr1.3:53561554-53561573 | MS.gene71468:intron | 10.0% |
| !!! | TTATAAGTAATTTTTTTTGT+AGG | + | chr1.3:53561553-53561572 | MS.gene71468:intron | 10.0% |
| !!! | TTCAATTTTTTTTAAAAACA+TGG | - | chr1.3:53562195-53562214 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAATTGAAGAA+AGG | + | chr1.3:53562198-53562217 | MS.gene71468:intron | 10.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1.3:53561583-53561602 | MS.gene71468:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr1.3:53561602-53561583 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr1.3:53561244-53561263 | None:intergenic | 15.0% |
| !! | ACATTTATATTGTATAATGA+TGG | + | chr1.3:53562429-53562448 | MS.gene71468:intron | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr1.3:53561363-53561382 | None:intergenic | 15.0% |
| !! | ATATTAAACAAATTCATGAA+AGG | + | chr1.3:53562289-53562308 | MS.gene71468:intron | 15.0% |
| !! | TAAATAATTTCCATCAATAT+GGG | - | chr1.3:53563232-53563251 | None:intergenic | 15.0% |
| !! | TATGTCATTGATAAAAAAAA+AGG | - | chr1.3:53560820-53560839 | None:intergenic | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1.3:53563581-53563600 | None:intergenic | 15.0% |
| !! | TTAAATAATTTCCATCAATA+TGG | - | chr1.3:53563233-53563252 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1.3:53563582-53563601 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | + | chr1.3:53563408-53563427 | MS.gene71468:intron | 15.0% |
| !!! | TACTATTTTCAAATTTCTTT+GGG | - | chr1.3:53560960-53560979 | None:intergenic | 15.0% |
| !!! | TATTTTGTTATATTGAAGAA+AGG | + | chr1.3:53562162-53562181 | MS.gene71468:intron | 15.0% |
| !!! | TTGTTTCTTATTTTAATTGT+GGG | - | chr1.3:53560716-53560735 | None:intergenic | 15.0% |
| !!! | TTTCATGAATTTGTTTAATA+TGG | - | chr1.3:53562290-53562309 | None:intergenic | 15.0% |
| !!! | TTTGTTTCTTATTTTAATTG+TGG | - | chr1.3:53560717-53560736 | None:intergenic | 15.0% |
| !! | AAGAAATTTGAAAATAGTAG+TGG | + | chr1.3:53560961-53560980 | MS.gene71468:intron | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1.3:53562963-53562982 | None:intergenic | 20.0% |
| !! | ATATTTAACCCTTGAAATTA+AGG | - | chr1.3:53561109-53561128 | None:intergenic | 20.0% |
| !! | CTTCATTTACTAAAAGTAAA+TGG | - | chr1.3:53561052-53561071 | None:intergenic | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | + | chr1.3:53563585-53563604 | MS.gene71468:CDS | 20.0% |
| !! | TTGAAATTAAGGAGTTAAAA+GGG | - | chr1.3:53561098-53561117 | None:intergenic | 20.0% |
| !! | TTGTAATTTCATGTTATCTT+TGG | + | chr1.3:53564037-53564056 | MS.gene71468:intron | 20.0% |
| !! | TTTAGACTTCTAAATATGTT+GGG | - | chr1.3:53562004-53562023 | None:intergenic | 20.0% |
| !! | TTTATGTTTAAGTATGTACA+AGG | + | chr1.3:53563432-53563451 | MS.gene71468:intron | 20.0% |
| !!! | AAACAAAATTTGTTTTAGCA+GGG | + | chr1.3:53561523-53561542 | MS.gene71468:intron | 20.0% |
| !!! | AGATACAAAAAAGTATGTAA+TGG | - | chr1.3:53561007-53561026 | None:intergenic | 20.0% |
| !!! | AGTTACAATTTTTTTTTCCA+GGG | + | chr1.3:53563032-53563051 | MS.gene71468:intron | 20.0% |
| !!! | CTACTATTTTCAAATTTCTT+TGG | - | chr1.3:53560961-53560980 | None:intergenic | 20.0% |
| !!! | GATACAAAAAAGTATGTAAT+GGG | - | chr1.3:53561006-53561025 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr1.3:53561274-53561293 | MS.gene71468:intron | 20.0% |
| !!! | TAAACAAAATTTGTTTTAGC+AGG | + | chr1.3:53561522-53561541 | MS.gene71468:intron | 20.0% |
| !!! | TAAACTATAAAGTTTTCAGA+AGG | - | chr1.3:53562398-53562417 | None:intergenic | 20.0% |
| !!! | TAGTTACAATTTTTTTTTCC+AGG | + | chr1.3:53563031-53563050 | MS.gene71468:intron | 20.0% |
| !!! | TGTTTAAGGTTTTAATTTTC+TGG | + | chr1.3:53563324-53563343 | MS.gene71468:CDS | 20.0% |
| !!! | TTTACTTTTAGTAAATGAAG+AGG | + | chr1.3:53561052-53561071 | MS.gene71468:intron | 20.0% |
| !!! | TTTTAACTCCTTAATTTCAA+GGG | + | chr1.3:53561098-53561117 | MS.gene71468:intron | 20.0% |
| !!! | TTTTACGATATTTTTTTCAG+AGG | - | chr1.3:53561325-53561344 | None:intergenic | 20.0% |
| !!! | TTTTAGACTTCTAAATATGT+TGG | - | chr1.3:53562005-53562024 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTGTTTCAATTGT+GGG | - | chr1.3:53561920-53561939 | None:intergenic | 20.0% |
| ! | AAAAAAGAACAACTTTGCAT+TGG | + | chr1.3:53561717-53561736 | MS.gene71468:intron | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr1.3:53561233-53561252 | None:intergenic | 25.0% |
| ! | AAACCTTATCCATAAAGATT+TGG | + | chr1.3:53561937-53561956 | MS.gene71468:intron | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | + | chr1.3:53563887-53563906 | MS.gene71468:CDS | 25.0% |
| ! | ATATTAAATGGGTACGTATT+CGG | + | chr1.3:53563940-53563959 | MS.gene71468:intron | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | - | chr1.3:53563726-53563745 | None:intergenic | 25.0% |
| ! | CTTGAAATTAAGGAGTTAAA+AGG | - | chr1.3:53561099-53561118 | None:intergenic | 25.0% |
| ! | GGAAGAAAATACTTCAATTT+GGG | - | chr1.3:53563211-53563230 | None:intergenic | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | - | chr1.3:53563727-53563746 | None:intergenic | 25.0% |
| ! | TCAATGAAGATCTTTCTTAA+GGG | + | chr1.3:53562321-53562340 | MS.gene71468:intron | 25.0% |
| ! | TTCAATGAAGATCTTTCTTA+AGG | + | chr1.3:53562320-53562339 | MS.gene71468:intron | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1.3:53562685-53562704 | MS.gene71468:CDS | 25.0% |
| !! | AAGTTTTCAGAAGGATTTTT+TGG | - | chr1.3:53562389-53562408 | None:intergenic | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | + | chr1.3:53563824-53563843 | MS.gene71468:CDS | 25.0% |
| !! | TAGAAGGTTGCAATTTTATA+GGG | + | chr1.3:53561614-53561633 | MS.gene71468:intron | 25.0% |
| !! | TCAAGGGTTAAATATGTTTT+TGG | + | chr1.3:53561114-53561133 | MS.gene71468:intron | 25.0% |
| !! | TTAGAAGGTTGCAATTTTAT+AGG | + | chr1.3:53561613-53561632 | MS.gene71468:intron | 25.0% |
| !! | TTATCTTTGGAAATTGAAGA+AGG | + | chr1.3:53564050-53564069 | MS.gene71468:intron | 25.0% |
| !!! | AATAGTTTGACAGGTTTTTT+AGG | - | chr1.3:53562511-53562530 | None:intergenic | 25.0% |
| !!! | ATAAAGTTTTGATGAGTTCA+AGG | + | chr1.3:53562088-53562107 | MS.gene71468:intron | 25.0% |
| !!! | CTTTTAACTCCTTAATTTCA+AGG | + | chr1.3:53561097-53561116 | MS.gene71468:intron | 25.0% |
| !!! | GTTTTTCTTTGTTTCAATTG+TGG | - | chr1.3:53561921-53561940 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | + | chr1.3:53563728-53563747 | MS.gene71468:CDS | 25.0% |
| !!! | TTTTTTAACATGTACCCTTA+GGG | - | chr1.3:53561695-53561714 | None:intergenic | 25.0% |
| !!! | TTTTTTTAACATGTACCCTT+AGG | - | chr1.3:53561696-53561715 | None:intergenic | 25.0% |
| AAAACCTGTCAAACTATTCA+TGG | + | chr1.3:53562513-53562532 | MS.gene71468:CDS | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | + | chr1.3:53562514-53562533 | MS.gene71468:CDS | 30.0% | |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr1.3:53561598-53561617 | MS.gene71468:intron | 30.0% | |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr1.3:53561617-53561598 | None:intergenic | 30.0% | |
| ACATCATAATCAGCAAATTG+AGG | + | chr1.3:53563094-53563113 | MS.gene71468:CDS | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1.3:53562833-53562852 | None:intergenic | 30.0% | |
| ATCCTTAACTAATTGAAGCT+AGG | - | chr1.3:53561658-53561677 | None:intergenic | 30.0% | |
| ATCTCTCCAAATAGAAGAAA+TGG | - | chr1.3:53560932-53560951 | None:intergenic | 30.0% | |
| ATCTTTCCATTTGTCAAACT+CGG | - | chr1.3:53564412-53564431 | None:intergenic | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | + | chr1.3:53564461-53564480 | MS.gene71468:CDS | 30.0% | |
| CAAAAGTTGTTAACCACATT+TGG | - | chr1.3:53564219-53564238 | None:intergenic | 30.0% | |
| CAATGACACAAGAATTAATG+TGG | + | chr1.3:53563886-53563905 | MS.gene71468:CDS | 30.0% | |
| CATAATATGGATAAGGTCAA+TGG | + | chr1.3:53564609-53564628 | MS.gene71468:CDS | 30.0% | |
| CATATTAACTAATGCCCTAA+GGG | + | chr1.3:53561678-53561697 | MS.gene71468:intron | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | + | chr1.3:53562742-53562761 | MS.gene71468:CDS | 30.0% | |
| CATTGACCTTATCCATATTA+TGG | - | chr1.3:53564611-53564630 | None:intergenic | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | + | chr1.3:53564089-53564108 | MS.gene71468:CDS | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | - | chr1.3:53562630-53562649 | None:intergenic | 30.0% | |
| GAAAAGTCTGTCATCATTTA+TGG | + | chr1.3:53564075-53564094 | MS.gene71468:CDS | 30.0% | |
| GAATTGGTACCAAATCTTTA+TGG | - | chr1.3:53561949-53561968 | None:intergenic | 30.0% | |
| GGGAAGAAAATACTTCAATT+TGG | - | chr1.3:53563212-53563231 | None:intergenic | 30.0% | |
| GTACCAAATCTTTATGGATA+AGG | - | chr1.3:53561943-53561962 | None:intergenic | 30.0% | |
| TAAATATGTTGGGATGATCT+TGG | - | chr1.3:53561994-53562013 | None:intergenic | 30.0% | |
| TAACCCAATATACATCAACT+GGG | - | chr1.3:53562832-53562851 | None:intergenic | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | - | chr1.3:53563557-53563576 | None:intergenic | 30.0% | |
| TCATATTAACTAATGCCCTA+AGG | + | chr1.3:53561677-53561696 | MS.gene71468:intron | 30.0% | |
| TCCTTAACTAATTGAAGCTA+GGG | - | chr1.3:53561657-53561676 | None:intergenic | 30.0% | |
| TCTTAACATGTGTTCATCAA+GGG | + | chr1.3:53561810-53561829 | MS.gene71468:intron | 30.0% | |
| TGTTTAAGTATGTACAAGGT+TGG | + | chr1.3:53563436-53563455 | MS.gene71468:intron | 30.0% | |
| TTCTTAACATGTGTTCATCA+AGG | + | chr1.3:53561809-53561828 | MS.gene71468:intron | 30.0% | |
| TTGCTCTCTCTAATAACAAT+TGG | + | chr1.3:53560688-53560707 | MS.gene71468:intron | 30.0% | |
| TTTCTTACAAGAATGAGACT+GGG | + | chr1.3:53564316-53564335 | MS.gene71468:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1.3:53562825-53562844 | MS.gene71468:CDS | 30.0% |
| ! | AATTGTTATTAGAGAGAGCA+AGG | - | chr1.3:53560689-53560708 | None:intergenic | 30.0% |
| ! | AGGCAGAATTTATCTCATTT+TGG | + | chr1.3:53563060-53563079 | MS.gene71468:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1.3:53562826-53562845 | MS.gene71468:CDS | 30.0% |
| ! | ATTGTTATTAGAGAGAGCAA+GGG | - | chr1.3:53560688-53560707 | None:intergenic | 30.0% |
| ! | CAAATGTGGTTAACAACTTT+TGG | + | chr1.3:53564217-53564236 | MS.gene71468:CDS | 30.0% |
| ! | CATTCCATATGATTCAAGTT+TGG | + | chr1.3:53563823-53563842 | MS.gene71468:CDS | 30.0% |
| ! | GATTATAGCTTGACACATTT+TGG | + | chr1.3:53563150-53563169 | MS.gene71468:intron | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1.3:53563219-53563238 | MS.gene71468:intron | 30.0% |
| ! | TAGAAGGTCGCAATTTTATA+GGG | - | chr1.3:53561141-53561160 | None:intergenic | 30.0% |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | - | chr1.3:53561142-53561161 | None:intergenic | 30.0% |
| ! | TTCAATTGACCTATTTTGCT+TGG | + | chr1.3:53564182-53564201 | MS.gene71468:CDS | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | + | chr1.3:53563825-53563844 | MS.gene71468:CDS | 30.0% |
| ! | TTTGAAGCAAATTAACTCTG+AGG | + | chr1.3:53560510-53560529 | MS.gene71468:CDS | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1.3:53563871-53563890 | None:intergenic | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1.3:53563310-53563329 | MS.gene71468:CDS | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | + | chr1.3:53564224-53564243 | MS.gene71468:CDS | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | - | chr1.3:53563877-53563896 | None:intergenic | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr1.3:53561201-53561220 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr1.3:53561202-53561221 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | + | chr1.3:53563040-53563059 | MS.gene71468:intron | 30.0% |
| AACAAACACTGTTACACAAC+AGG | + | chr1.3:53564281-53564300 | MS.gene71468:CDS | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | - | chr1.3:53563308-53563327 | None:intergenic | 35.0% | |
| AAGGTGAGAGCAAATATGAA+CGG | - | chr1.3:53564496-53564515 | None:intergenic | 35.0% | |
| AAGTCTGTCATCATTTATGG+AGG | + | chr1.3:53564078-53564097 | MS.gene71468:CDS | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1.3:53563699-53563718 | None:intergenic | 35.0% | |
| ACCCTAGCTTCAATTAGTTA+AGG | + | chr1.3:53561653-53561672 | MS.gene71468:intron | 35.0% | |
| AGAATTTGATCAAGGCAACT+TGG | + | chr1.3:53562714-53562733 | MS.gene71468:CDS | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | + | chr1.3:53563731-53563750 | MS.gene71468:CDS | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | + | chr1.3:53564094-53564113 | MS.gene71468:CDS | 35.0% | |
| ATTGTGACTTCTGTTGATCA+TGG | + | chr1.3:53564363-53564382 | MS.gene71468:CDS | 35.0% | |
| ATTTGCTTCAAAGTACACAG+CGG | - | chr1.3:53560502-53560521 | None:intergenic | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | + | chr1.3:53564120-53564139 | MS.gene71468:CDS | 35.0% | |
| CAGAGTATAACAAGTTACTC+AGG | + | chr1.3:53563267-53563286 | MS.gene71468:CDS | 35.0% | |
| CTTTCTTACAAGAATGAGAC+TGG | + | chr1.3:53564315-53564334 | MS.gene71468:CDS | 35.0% | |
| GCTAGGGTTAAATATGTTTC+TGG | - | chr1.3:53561641-53561660 | None:intergenic | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | - | chr1.3:53563777-53563796 | None:intergenic | 35.0% | |
| GGAGAGACTAATAAATGTAG+AGG | - | chr1.3:53560911-53560930 | None:intergenic | 35.0% | |
| GTCTCTCCATTTCTTCTATT+TGG | + | chr1.3:53560923-53560942 | MS.gene71468:intron | 35.0% | |
| GTGTTGCCATAATATGGATA+AGG | + | chr1.3:53564602-53564621 | MS.gene71468:CDS | 35.0% | |
| GTTCTTGTTCATTTCAACTC+TGG | + | chr1.3:53563524-53563543 | MS.gene71468:CDS | 35.0% | |
| TAATGAACACTTCCATTGTG+CGG | - | chr1.3:53564575-53564594 | None:intergenic | 35.0% | |
| TCACAATGCACTATACAGAT+TGG | + | chr1.3:53563126-53563145 | MS.gene71468:CDS | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | - | chr1.3:53563798-53563817 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | - | chr1.3:53563368-53563387 | None:intergenic | 35.0% | |
| TTGTGACTTCTGTTGATCAT+GGG | + | chr1.3:53564364-53564383 | MS.gene71468:CDS | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | - | chr1.3:53563369-53563388 | None:intergenic | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1.3:53562524-53562543 | MS.gene71468:CDS | 35.0% |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1.3:53563834-53563853 | MS.gene71468:CDS | 35.0% |
| ! | CAAGTTTAGAGCACTATGAA+AGG | - | chr1.3:53561460-53561479 | None:intergenic | 35.0% |
| ! | CTACAAGTGTTGCCATAATA+TGG | + | chr1.3:53564596-53564615 | MS.gene71468:CDS | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1.3:53563863-53563882 | None:intergenic | 35.0% |
| ! | GGAAAGGACAAAAGAGTTTT+CGG | - | chr1.3:53561851-53561870 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1.3:53563864-53563883 | None:intergenic | 35.0% |
| ! | TCTTTGGAAATTGAAGAAGG+AGG | + | chr1.3:53564053-53564072 | MS.gene71468:intron | 35.0% |
| ! | TGTGTTTGAAGCGATTTCAA+AGG | - | chr1.3:53561876-53561895 | None:intergenic | 35.0% |
| ! | TTGTGGGCTAATTTGAGAAA+AGG | - | chr1.3:53561904-53561923 | None:intergenic | 35.0% |
| ! | TTTGAAGCGATTTCAAAGGA+AGG | - | chr1.3:53561872-53561891 | None:intergenic | 35.0% |
| !! | AAGACTAAGAGCATCTCTAA+TGG | + | chr1.3:53560621-53560640 | MS.gene71468:intron | 35.0% |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1.3:53564268-53564287 | None:intergenic | 35.0% |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | + | chr1.3:53563497-53563516 | MS.gene71468:CDS | 35.0% |
| !!! | CGATGTTTTTTCAATGCTTC+AGG | - | chr1.3:53562674-53562693 | None:intergenic | 35.0% |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1.3:53563608-53563627 | MS.gene71468:CDS | 40.0% | |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1.3:53563307-53563326 | None:intergenic | 40.0% | |
| AGAAGTCACAATAGACCCTT+TGG | - | chr1.3:53564355-53564374 | None:intergenic | 40.0% | |
| AGATGCGCAACTAGATTAGT+TGG | - | chr1.3:53562137-53562156 | None:intergenic | 40.0% | |
| AGCGATTTCAAAGGAAGGAA+AGG | - | chr1.3:53561867-53561886 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | - | chr1.3:53564163-53564182 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1.3:53563637-53563656 | None:intergenic | 40.0% | |
| CAACCCATGAATAGTTTGAC+AGG | - | chr1.3:53562520-53562539 | None:intergenic | 40.0% | |
| CAGCAACATTAGGAATCTCA+AGG | - | chr1.3:53564515-53564534 | None:intergenic | 40.0% | |
| CATCACTTTGCACCCATTAA+AGG | + | chr1.3:53563711-53563730 | MS.gene71468:CDS | 40.0% | |
| CCAGAAATCTCCATACTCAA+GGG | - | chr1.3:53562573-53562592 | None:intergenic | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | - | chr1.3:53563830-53563849 | None:intergenic | 40.0% | |
| CTGAGCAACAATTGCAACAA+TGG | - | chr1.3:53562861-53562880 | None:intergenic | 40.0% | |
| CTGGACACTCGATAAAATCT+GGG | - | chr1.3:53564545-53564564 | None:intergenic | 40.0% | |
| CTTGAGATTCCTAATGTTGC+TGG | + | chr1.3:53564513-53564532 | MS.gene71468:CDS | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | + | chr1.3:53562617-53562636 | MS.gene71468:CDS | 40.0% | |
| GGAGCTCAAGAATTTGATCA+AGG | + | chr1.3:53562706-53562725 | MS.gene71468:CDS | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | - | chr1.3:53564194-53564213 | None:intergenic | 40.0% | |
| TAAATTCTGCCTCTTATCCC+TGG | - | chr1.3:53563052-53563071 | None:intergenic | 40.0% | |
| TAATAGCGGCATCATTTGCT+AGG | - | chr1.3:53564149-53564168 | None:intergenic | 40.0% | |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1.3:53563919-53563938 | None:intergenic | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1.3:53563636-53563655 | None:intergenic | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | - | chr1.3:53564546-53564565 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | + | chr1.3:53563373-53563392 | MS.gene71468:CDS | 40.0% | |
| TTACAAGAATGAGACTGGGT+GGG | + | chr1.3:53564320-53564339 | MS.gene71468:CDS | 40.0% | |
| TTAGAGCTGTAGCGAAGAAT+TGG | - | chr1.3:53561965-53561984 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1.3:53563920-53563939 | None:intergenic | 40.0% | |
| TTTCTTGTGTTGAGTCCACA+AGG | + | chr1.3:53563780-53563799 | MS.gene71468:CDS | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | - | chr1.3:53564148-53564167 | None:intergenic | 40.0% |
| ! | AATGGGTTCTACCACTAAGT+GGG | - | chr1.3:53560989-53561008 | None:intergenic | 40.0% |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1.3:53562623-53562642 | None:intergenic | 40.0% |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1.3:53563833-53563852 | MS.gene71468:CDS | 40.0% |
| ! | GGGATTTTTCCAGCAACATT+AGG | - | chr1.3:53564525-53564544 | None:intergenic | 40.0% |
| ! | GTGGATTAATGTTATCCAGG+TGG | - | chr1.3:53560462-53560481 | None:intergenic | 40.0% |
| ! | TTGTAAGCTATTTCCTCACC+TGG | - | chr1.3:53562473-53562492 | None:intergenic | 40.0% |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1.3:53562922-53562941 | MS.gene71468:intron | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | - | chr1.3:53560465-53560484 | None:intergenic | 40.0% |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | + | chr1.3:53563679-53563698 | MS.gene71468:CDS | 40.0% |
| !! | TAATGGGTTCTACCACTAAG+TGG | - | chr1.3:53560990-53561009 | None:intergenic | 40.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1.3:53562815-53562834 | None:intergenic | 45.0% | |
| ATGATGGCAGATGTCATGCA+AGG | + | chr1.3:53562445-53562464 | MS.gene71468:intron | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1.3:53563306-53563325 | None:intergenic | 45.0% | |
| CAGTGTCCGAGTTTGACAAA+TGG | + | chr1.3:53564403-53564422 | MS.gene71468:CDS | 45.0% | |
| CCAAAAGCTCCCATCTATGA+TGG | + | chr1.3:53563356-53563375 | MS.gene71468:CDS | 45.0% | |
| CCCTTGAGTATGGAGATTTC+TGG | + | chr1.3:53562570-53562589 | MS.gene71468:CDS | 45.0% | |
| CTTACAAGAATGAGACTGGG+TGG | + | chr1.3:53564319-53564338 | MS.gene71468:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1.3:53563614-53563633 | None:intergenic | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1.3:53563607-53563626 | MS.gene71468:CDS | 45.0% | |
| GCCAGAAATCTCCATACTCA+AGG | - | chr1.3:53562574-53562593 | None:intergenic | 45.0% | |
| GGTGGGCAATTGTAACCAAA+GGG | + | chr1.3:53564337-53564356 | MS.gene71468:CDS | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1.3:53563298-53563317 | MS.gene71468:CDS | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | - | chr1.3:53563359-53563378 | None:intergenic | 45.0% |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1.3:53562614-53562633 | None:intergenic | 45.0% |
| ! | TAGTAGTGGAACCCACTTAG+TGG | + | chr1.3:53560975-53560994 | MS.gene71468:intron | 45.0% |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | + | chr1.3:53562560-53562579 | MS.gene71468:CDS | 45.0% |
| CAACTCGCGTCATGACATCA+AGG | + | chr1.3:53562772-53562791 | MS.gene71468:CDS | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1.3:53563289-53563308 | MS.gene71468:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1.3:53563620-53563639 | MS.gene71468:CDS | 50.0% | |
| GCTTCAGGCTTCGAAAGTTG+AGG | - | chr1.3:53562659-53562678 | None:intergenic | 50.0% | |
| GGAGTCTCAACAGCCAAATG+TGG | + | chr1.3:53564203-53564222 | MS.gene71468:CDS | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1.3:53564336-53564355 | MS.gene71468:CDS | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1.3:53564560-53564579 | MS.gene71468:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1.3:53564564-53564583 | None:intergenic | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | - | chr1.3:53562610-53562629 | None:intergenic | 50.0% |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1.3:53563902-53563921 | MS.gene71468:CDS | 50.0% |
| AGCGGTGAAGTGAAGCTAGC+TGG | - | chr1.3:53560484-53560503 | None:intergenic | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1.3:53563628-53563647 | MS.gene71468:CDS | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | - | chr1.3:53560481-53560500 | None:intergenic | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1.3:53562803-53562822 | None:intergenic | 55.0% | |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1.3:53562799-53562818 | MS.gene71468:CDS | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1.3:53563623-53563642 | MS.gene71468:CDS | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | + | chr1.3:53562452-53562471 | MS.gene71468:intron | 55.0% |
| TCAAGGAGGTCTGGACCACC+TGG | + | chr1.3:53560444-53560463 | MS.gene71468:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1.3:53562457-53562476 | MS.gene71468:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53560439 | 53564641 | 53560439 | ID=MS.gene71468 |
| chr1.3 | mRNA | 53560439 | 53564641 | 53560439 | ID=MS.gene71468.t1;Parent=MS.gene71468 |
| chr1.3 | exon | 53560439 | 53560531 | 53560439 | ID=MS.gene71468.t1.exon1;Parent=MS.gene71468.t1 |
| chr1.3 | CDS | 53560439 | 53560531 | 53560439 | ID=cds.MS.gene71468.t1;Parent=MS.gene71468.t1 |
| chr1.3 | exon | 53562455 | 53562903 | 53562455 | ID=MS.gene71468.t1.exon2;Parent=MS.gene71468.t1 |
| chr1.3 | CDS | 53562455 | 53562903 | 53562455 | ID=cds.MS.gene71468.t1;Parent=MS.gene71468.t1 |
| chr1.3 | exon | 53563053 | 53563147 | 53563053 | ID=MS.gene71468.t1.exon3;Parent=MS.gene71468.t1 |
| chr1.3 | CDS | 53563053 | 53563147 | 53563053 | ID=cds.MS.gene71468.t1;Parent=MS.gene71468.t1 |
| chr1.3 | exon | 53563261 | 53563394 | 53563261 | ID=MS.gene71468.t1.exon4;Parent=MS.gene71468.t1 |
| chr1.3 | CDS | 53563261 | 53563394 | 53563261 | ID=cds.MS.gene71468.t1;Parent=MS.gene71468.t1 |
| chr1.3 | exon | 53563492 | 53563950 | 53563492 | ID=MS.gene71468.t1.exon5;Parent=MS.gene71468.t1 |
| chr1.3 | CDS | 53563492 | 53563950 | 53563492 | ID=cds.MS.gene71468.t1;Parent=MS.gene71468.t1 |
| chr1.3 | exon | 53564072 | 53564641 | 53564072 | ID=MS.gene71468.t1.exon6;Parent=MS.gene71468.t1 |
| chr1.3 | CDS | 53564072 | 53564641 | 53564072 | ID=cds.MS.gene71468.t1;Parent=MS.gene71468.t1 |
| Gene Sequence |
| Protein sequence |
