Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71576.t1 | XP_013469937.1 | 87.2 | 547 | 68 | 2 | 1 | 547 | 1 | 545 | 2.10E-128 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71576.t1 | G8A0T5 | 87.2 | 547 | 68 | 2 | 1 | 547 | 1 | 545 | 1.5e-128 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene71576 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene71576 | 0.820868 | 5.46E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene71576 | 0.81632 | 5.88E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene71576 | 0.829297 | 5.57E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene71576 | 0.822988 | 1.76E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene71576 | 0.809035 | 2.31E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene71576 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene71576 | 0.806477 | 8.07E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene71576 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene71576 | 0.869331 | 3.35E-66 | -1.69E-46 |
| MS.gene052896 | MS.gene71576 | 0.81359 | 2.37E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene71576 | 0.811634 | 6.35E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene71576 | 0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene71576 | 0.808333 | 3.26E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene71576 | 0.810397 | 1.18E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene71576 | 0.809862 | 1.53E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene71576 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene71576 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene71576 | 0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene71576 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene71576 | 0.84095 | 6.39E-58 | -1.69E-46 |
| MS.gene058783 | MS.gene71576 | 0.803831 | 2.89E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene71576 | 0.820406 | 6.97E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene71576 | 0.805052 | 1.61E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene71576 | 0.8299 | 3.97E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene71576 | 0.803193 | 3.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71576.t1 | MTR_1g105890 | 92.687 | 547 | 38 | 2 | 1 | 547 | 1 | 545 | 0.0 | 885 |
| MS.gene71576.t1 | MTR_5g005430 | 41.340 | 612 | 238 | 21 | 1 | 545 | 1 | 558 | 3.35e-89 | 285 |
| MS.gene71576.t1 | MTR_4g097790 | 46.053 | 76 | 31 | 4 | 1 | 74 | 1 | 68 | 2.71e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71576.t1 | AT4G33740 | 45.868 | 242 | 112 | 6 | 7 | 244 | 5 | 231 | 1.82e-32 | 130 |
| MS.gene71576.t1 | AT4G33740 | 45.868 | 242 | 112 | 6 | 7 | 244 | 5 | 231 | 1.82e-32 | 130 |
| MS.gene71576.t1 | AT4G33740 | 45.868 | 242 | 112 | 6 | 7 | 244 | 5 | 231 | 1.82e-32 | 130 |
| MS.gene71576.t1 | AT4G33740 | 45.868 | 242 | 112 | 6 | 7 | 244 | 5 | 231 | 1.82e-32 | 130 |
| MS.gene71576.t1 | AT4G33740 | 45.868 | 242 | 112 | 6 | 7 | 244 | 5 | 231 | 1.82e-32 | 130 |
| MS.gene71576.t1 | AT4G37820 | 50.000 | 92 | 40 | 5 | 1 | 91 | 1 | 87 | 5.20e-19 | 90.9 |
| MS.gene71576.t1 | AT4G37820 | 50.000 | 92 | 40 | 5 | 1 | 91 | 1 | 87 | 5.20e-19 | 90.9 |
Find 96 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATCCAATTGGCTATC+AGG | 0.178825 | 1.4:+81681126 | None:intergenic |
| TGTTAACGTGTCCAGTAATT+TGG | 0.180302 | 1.4:-81680770 | MS.gene71576:CDS |
| GTTTCTGTTAAACCTGAAAA+TGG | 0.226292 | 1.4:-81680874 | MS.gene71576:CDS |
| TGTTGCTTGGTGTCTGCTTC+TGG | 0.245511 | 1.4:-81681998 | MS.gene71576:CDS |
| TAGCACTGAAACAAGTAATT+TGG | 0.256562 | 1.4:-81681352 | MS.gene71576:CDS |
| CGCATTTCTATCCAAATTAC+TGG | 0.276741 | 1.4:+81680759 | None:intergenic |
| CTAAGTTAACCATGATAAAA+AGG | 0.287367 | 1.4:-81682085 | None:intergenic |
| GGTAGAAAGGACCTTCTTCC+GGG | 0.327131 | 1.4:-81681873 | MS.gene71576:CDS |
| TCAAAACATACATGAGGATA+TGG | 0.336233 | 1.4:-81680533 | MS.gene71576:CDS |
| TGGTAGAAAGGACCTTCTTC+CGG | 0.348772 | 1.4:-81681874 | MS.gene71576:CDS |
| TTGGCTATCAGGGTTTGTTT+TGG | 0.349601 | 1.4:+81681137 | None:intergenic |
| ACAGTTCATACAACAATTAC+TGG | 0.363960 | 1.4:-81680976 | MS.gene71576:CDS |
| AGACAAGGAGGATGAGGAAA+AGG | 0.369456 | 1.4:-81681472 | MS.gene71576:CDS |
| ATCATTCTGATGAAAGTAAC+AGG | 0.386411 | 1.4:-81681272 | MS.gene71576:CDS |
| ACACGACACTATTGATTCTT+CGG | 0.386613 | 1.4:-81680560 | MS.gene71576:CDS |
| GACAAGGAGGATGAGGAAAA+GGG | 0.393398 | 1.4:-81681471 | MS.gene71576:CDS |
| TTTCCTTCATTTCTAATATC+CGG | 0.393946 | 1.4:+81680481 | None:intergenic |
| GATCTTTGATTCCTACTACT+TGG | 0.415150 | 1.4:+81682059 | None:intergenic |
| CTTCAAGCTATTCTGTTGCT+TGG | 0.419009 | 1.4:-81682011 | MS.gene71576:CDS |
| TCAAAATGATTCTGATTTGA+AGG | 0.420588 | 1.4:-81681247 | MS.gene71576:CDS |
| CTGCTTCTGGTTGATCTACC+AGG | 0.434517 | 1.4:-81681985 | MS.gene71576:CDS |
| GATTACTGCTTAAATCCAAT+TGG | 0.439581 | 1.4:+81681118 | None:intergenic |
| AACTGATCTTGACACATTGC+CGG | 0.441015 | 1.4:-81680500 | MS.gene71576:CDS |
| AAAGGACCTTCTTCCGGGTA+AGG | 0.449636 | 1.4:-81681868 | MS.gene71576:CDS |
| TAAGCACGGAGCCGAAGAGC+AGG | 0.458636 | 1.4:-81681658 | MS.gene71576:CDS |
| AGTAGGAATCAAAGATCTAA+AGG | 0.460334 | 1.4:-81682053 | MS.gene71576:CDS |
| ATTACCAGGTAGGTTTCCTT+CGG | 0.462002 | 1.4:+81680906 | None:intergenic |
| AGTGAAGAGGTGGAAGATGA+AGG | 0.462568 | 1.4:-81681618 | MS.gene71576:CDS |
| CAACAACAAGAAGGAGAAGA+AGG | 0.465449 | 1.4:-81681756 | MS.gene71576:CDS |
| GATGACACGTCAAGTTCATC+TGG | 0.468805 | 1.4:-81681048 | MS.gene71576:CDS |
| AACAAACCCTGATAGCCAAT+TGG | 0.472630 | 1.4:-81681133 | MS.gene71576:CDS |
| TCAAAGATCTAAAGGATTCA+AGG | 0.480436 | 1.4:-81682045 | MS.gene71576:CDS |
| TGATCCGTCTCAGTTATAAT+CGG | 0.485326 | 1.4:+81681909 | None:intergenic |
| TTAAATCCAATTGGCTATCA+GGG | 0.486442 | 1.4:+81681127 | None:intergenic |
| GATTCTGAAACTTGGTAGAA+AGG | 0.489839 | 1.4:-81681886 | MS.gene71576:CDS |
| TTGCCGGATATTAGAAATGA+AGG | 0.493543 | 1.4:-81680484 | MS.gene71576:CDS |
| GTGAAGACAACGTGCATGAA+GGG | 0.494786 | 1.4:-81681707 | MS.gene71576:CDS |
| ACAAGGAGGATGAGGAAAAG+GGG | 0.499091 | 1.4:-81681470 | MS.gene71576:CDS |
| AGAAGAGGGTGATGATGAGA+CGG | 0.505523 | 1.4:-81681502 | MS.gene71576:CDS |
| GCAACTGCTGGTAAAGAGGC+TGG | 0.509590 | 1.4:-81681186 | MS.gene71576:CDS |
| TGATCGTGATGATGAGGTTG+TGG | 0.514590 | 1.4:-81681544 | MS.gene71576:CDS |
| AAATGCGAGCTCTGATACCA+CGG | 0.515293 | 1.4:-81680743 | MS.gene71576:CDS |
| TTTAGATTTGTCACTTTCCG+TGG | 0.518761 | 1.4:+81680726 | None:intergenic |
| AGCAGTAACTCGACAGGCAC+TGG | 0.519435 | 1.4:-81681072 | MS.gene71576:CDS |
| ACCACGACAATCATGAAGCT+CGG | 0.520214 | 1.4:-81681434 | MS.gene71576:CDS |
| CCACGACAATCATGAAGCTC+GGG | 0.521569 | 1.4:-81681433 | MS.gene71576:CDS |
| AGAGAAAGACAAAGAAGAAG+AGG | 0.523414 | 1.4:-81681517 | MS.gene71576:CDS |
| TGTCATGATTGTGCTTAACC+TGG | 0.523771 | 1.4:+81681967 | None:intergenic |
| TGACAGTTTGTCTAATGAAA+CGG | 0.525886 | 1.4:-81681160 | MS.gene71576:CDS |
| CCCGAGCTTCATGATTGTCG+TGG | 0.527799 | 1.4:+81681433 | None:intergenic |
| TGAAAGCAAAAGTGAAGAGG+TGG | 0.527884 | 1.4:-81681628 | MS.gene71576:CDS |
| AAATGCAACTGCTGGTAAAG+AGG | 0.532472 | 1.4:-81681190 | MS.gene71576:CDS |
| TACCGAGGATGAGATGTTCA+AGG | 0.534057 | 1.4:-81680656 | MS.gene71576:CDS |
| CTTCAACCTTACCCGGAAGA+AGG | 0.542817 | 1.4:+81681862 | None:intergenic |
| GAGAAAGACAAAGAAGAAGA+GGG | 0.543819 | 1.4:-81681516 | MS.gene71576:CDS |
| TTATCTGCTTCAACCTTACC+CGG | 0.547125 | 1.4:+81681855 | None:intergenic |
| CAAGGAGGATGAGGAAAAGG+GGG | 0.549163 | 1.4:-81681469 | MS.gene71576:CDS |
| TGAAAAGCACGAGGAAGAAG+AGG | 0.550031 | 1.4:-81681829 | MS.gene71576:CDS |
| GCACAATCATGACAAGAAGA+AGG | 0.554608 | 1.4:-81681958 | MS.gene71576:CDS |
| GAAGAGGTGGAAGATGAAGG+AGG | 0.566940 | 1.4:-81681615 | MS.gene71576:CDS |
| ACGGATCAGATTCTGAAACT+TGG | 0.567290 | 1.4:-81681894 | MS.gene71576:CDS |
| GAATGAAGACAAGGAGGATG+AGG | 0.567800 | 1.4:-81681478 | MS.gene71576:CDS |
| GGAGATATAAAGCAAACAGA+TGG | 0.568088 | 1.4:-81680955 | MS.gene71576:CDS |
| ACGGAAAGTGACAAATCTAA+AGG | 0.571831 | 1.4:-81680724 | MS.gene71576:CDS |
| ACCCTTGAACATCTCATCCT+CGG | 0.573116 | 1.4:+81680654 | None:intergenic |
| CAATTGAATCATTACCAGGT+AGG | 0.578816 | 1.4:+81680896 | None:intergenic |
| ATCATGTGCCACAGCACTAG+AGG | 0.584624 | 1.4:+81681386 | None:intergenic |
| GCACGGAGCCGAAGAGCAGG+AGG | 0.585830 | 1.4:-81681655 | MS.gene71576:CDS |
| GACGCAAGCAGTAACTCGAC+AGG | 0.588343 | 1.4:-81681078 | MS.gene71576:CDS |
| CACGATGAACAACAACAAGA+AGG | 0.590155 | 1.4:-81681765 | MS.gene71576:CDS |
| TCTGATTTGAAGGTTACAGA+AGG | 0.593375 | 1.4:-81681237 | MS.gene71576:CDS |
| AGCTCGGGAAGAACATTACA+AGG | 0.597038 | 1.4:-81681418 | MS.gene71576:CDS |
| AAATGAAAGCAAAAGTGAAG+AGG | 0.597712 | 1.4:-81681631 | MS.gene71576:CDS |
| AGTGAAGACAACGTGCATGA+AGG | 0.602024 | 1.4:-81681708 | MS.gene71576:CDS |
| ATTTCCGAAGGAAACCTACC+TGG | 0.602219 | 1.4:-81680910 | MS.gene71576:CDS |
| GAAACAATTGAATCATTACC+AGG | 0.603201 | 1.4:+81680892 | None:intergenic |
| ATCTAAAATTTCAGTGACAG+AGG | 0.616818 | 1.4:+81680591 | None:intergenic |
| TGTTAAACCTGAAAATGGAG+TGG | 0.618379 | 1.4:-81680869 | MS.gene71576:CDS |
| ACCGAGGATGAGATGTTCAA+GGG | 0.630659 | 1.4:-81680655 | MS.gene71576:CDS |
| GATGAAGAAGAAAATAAGCA+CGG | 0.630678 | 1.4:-81681672 | MS.gene71576:CDS |
| TGATGATGCCTCTAGTGCTG+TGG | 0.631001 | 1.4:-81681394 | MS.gene71576:CDS |
| CATACATGAGGATATGGCAA+AGG | 0.631044 | 1.4:-81680527 | MS.gene71576:CDS |
| ACAGAAGGTGAATTGACAGA+TGG | 0.633370 | 1.4:-81681222 | MS.gene71576:CDS |
| TCAGAATACTGACGCTACCG+AGG | 0.636306 | 1.4:-81680671 | MS.gene71576:CDS |
| AAGGAGGATGAGGAAAAGGG+GGG | 0.640271 | 1.4:-81681468 | MS.gene71576:CDS |
| ACTCAAACAAGTGAAACCGA+TGG | 0.642931 | 1.4:-81680628 | MS.gene71576:CDS |
| AGTGGCAGTAAAATTTCCGA+AGG | 0.656357 | 1.4:-81680922 | MS.gene71576:CDS |
| AGTGCATTAGAGAAGACGAT+CGG | 0.671772 | 1.4:-81680814 | MS.gene71576:CDS |
| AAATGATCATGAGAAATCAG+AGG | 0.674111 | 1.4:-81681574 | MS.gene71576:CDS |
| GGATACTCAAAACATACATG+AGG | 0.674707 | 1.4:-81680539 | MS.gene71576:CDS |
| AGATAATGATCGTGATGATG+AGG | 0.692551 | 1.4:-81681550 | MS.gene71576:CDS |
| ACTGCCGATTATAACTGAGA+CGG | 0.699045 | 1.4:-81681913 | MS.gene71576:CDS |
| TGAGACGGAGAATGAAGACA+AGG | 0.700440 | 1.4:-81681487 | MS.gene71576:CDS |
| ACAGATGGATTAGAGCAGAG+TGG | 0.713151 | 1.4:-81680940 | MS.gene71576:CDS |
| AGATAAGAATGAAAAGCACG+AGG | 0.713312 | 1.4:-81681838 | MS.gene71576:CDS |
| GACGGAGAATGAAGACAAGG+AGG | 0.719650 | 1.4:-81681484 | MS.gene71576:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTCCTTCATTTCTAATATC+CGG | + | chr1.4:81682049-81682068 | None:intergenic | 25.0% |
| !! | TCAAAATGATTCTGATTTGA+AGG | - | chr1.4:81681280-81681299 | MS.gene71576:CDS | 25.0% |
| AAATGAAAGCAAAAGTGAAG+AGG | - | chr1.4:81680896-81680915 | MS.gene71576:CDS | 30.0% | |
| AAATGATCATGAGAAATCAG+AGG | - | chr1.4:81680953-81680972 | MS.gene71576:CDS | 30.0% | |
| ACAGTTCATACAACAATTAC+TGG | - | chr1.4:81681551-81681570 | MS.gene71576:CDS | 30.0% | |
| AGTAGGAATCAAAGATCTAA+AGG | - | chr1.4:81680474-81680493 | MS.gene71576:CDS | 30.0% | |
| ATCATTCTGATGAAAGTAAC+AGG | - | chr1.4:81681255-81681274 | MS.gene71576:CDS | 30.0% | |
| GAAACAATTGAATCATTACC+AGG | + | chr1.4:81681638-81681657 | None:intergenic | 30.0% | |
| GATGAAGAAGAAAATAAGCA+CGG | - | chr1.4:81680855-81680874 | MS.gene71576:CDS | 30.0% | |
| GATTACTGCTTAAATCCAAT+TGG | + | chr1.4:81681412-81681431 | None:intergenic | 30.0% | |
| GTTTCTGTTAAACCTGAAAA+TGG | - | chr1.4:81681653-81681672 | MS.gene71576:CDS | 30.0% | |
| TAAAAAGGAATCCAAGTAGT+AGG | - | chr1.4:81680457-81680476 | MS.gene71576:CDS | 30.0% | |
| TCAAAACATACATGAGGATA+TGG | - | chr1.4:81681994-81682013 | MS.gene71576:CDS | 30.0% | |
| TCAAAGATCTAAAGGATTCA+AGG | - | chr1.4:81680482-81680501 | MS.gene71576:CDS | 30.0% | |
| TGACAGTTTGTCTAATGAAA+CGG | - | chr1.4:81681367-81681386 | MS.gene71576:CDS | 30.0% | |
| TTAAATCCAATTGGCTATCA+GGG | + | chr1.4:81681403-81681422 | None:intergenic | 30.0% | |
| ! | ATCTAAAATTTCAGTGACAG+AGG | + | chr1.4:81681939-81681958 | None:intergenic | 30.0% |
| ! | TAGCACTGAAACAAGTAATT+TGG | - | chr1.4:81681175-81681194 | MS.gene71576:CDS | 30.0% |
| !!! | ATTTTTTCAAATGCAACTGC+TGG | - | chr1.4:81681329-81681348 | MS.gene71576:CDS | 30.0% |
| ACGGAAAGTGACAAATCTAA+AGG | - | chr1.4:81681803-81681822 | MS.gene71576:CDS | 35.0% | |
| AGAGAAAGACAAAGAAGAAG+AGG | - | chr1.4:81681010-81681029 | MS.gene71576:CDS | 35.0% | |
| CAATTGAATCATTACCAGGT+AGG | + | chr1.4:81681634-81681653 | None:intergenic | 35.0% | |
| CGCATTTCTATCCAAATTAC+TGG | + | chr1.4:81681771-81681790 | None:intergenic | 35.0% | |
| CTGAAAAATCTTCGACTCTT+GGG | - | chr1.4:81681687-81681706 | MS.gene71576:CDS | 35.0% | |
| CTTAAATCCAATTGGCTATC+AGG | + | chr1.4:81681404-81681423 | None:intergenic | 35.0% | |
| GAGAAAGACAAAGAAGAAGA+GGG | - | chr1.4:81681011-81681030 | MS.gene71576:CDS | 35.0% | |
| GATCTTTGATTCCTACTACT+TGG | + | chr1.4:81680471-81680490 | None:intergenic | 35.0% | |
| GGAGATATAAAGCAAACAGA+TGG | - | chr1.4:81681572-81681591 | MS.gene71576:CDS | 35.0% | |
| GGATACTCAAAACATACATG+AGG | - | chr1.4:81681988-81682007 | MS.gene71576:CDS | 35.0% | |
| TGAAAAATCTTCGACTCTTG+GGG | - | chr1.4:81681688-81681707 | MS.gene71576:CDS | 35.0% | |
| TGATCCGTCTCAGTTATAAT+CGG | + | chr1.4:81680621-81680640 | None:intergenic | 35.0% | |
| TGTTAAACCTGAAAATGGAG+TGG | - | chr1.4:81681658-81681677 | MS.gene71576:CDS | 35.0% | |
| TGTTAACGTGTCCAGTAATT+TGG | - | chr1.4:81681757-81681776 | MS.gene71576:CDS | 35.0% | |
| TTGCCGGATATTAGAAATGA+AGG | - | chr1.4:81682043-81682062 | MS.gene71576:CDS | 35.0% | |
| ! | AGATAAGAATGAAAAGCACG+AGG | - | chr1.4:81680689-81680708 | MS.gene71576:CDS | 35.0% |
| ! | AGATAATGATCGTGATGATG+AGG | - | chr1.4:81680977-81680996 | MS.gene71576:CDS | 35.0% |
| ! | ATTTTGAGCATGATCAGACT+CGG | + | chr1.4:81681528-81681547 | None:intergenic | 35.0% |
| ! | TCTGATTTGAAGGTTACAGA+AGG | - | chr1.4:81681290-81681309 | MS.gene71576:CDS | 35.0% |
| !! | ACACGACACTATTGATTCTT+CGG | - | chr1.4:81681967-81681986 | MS.gene71576:CDS | 35.0% |
| !! | GATTCTGAAACTTGGTAGAA+AGG | - | chr1.4:81680641-81680660 | MS.gene71576:CDS | 35.0% |
| !! | TTTAGATTTGTCACTTTCCG+TGG | + | chr1.4:81681804-81681823 | None:intergenic | 35.0% |
| AAATGCAACTGCTGGTAAAG+AGG | - | chr1.4:81681337-81681356 | MS.gene71576:CDS | 40.0% | |
| AACAAACCCTGATAGCCAAT+TGG | - | chr1.4:81681394-81681413 | MS.gene71576:CDS | 40.0% | |
| AACTGATCTTGACACATTGC+CGG | - | chr1.4:81682027-81682046 | MS.gene71576:CDS | 40.0% | |
| ACAGAAGGTGAATTGACAGA+TGG | - | chr1.4:81681305-81681324 | MS.gene71576:CDS | 40.0% | |
| ACTCAAACAAGTGAAACCGA+TGG | - | chr1.4:81681899-81681918 | MS.gene71576:CDS | 40.0% | |
| AGTGCATTAGAGAAGACGAT+CGG | - | chr1.4:81681713-81681732 | MS.gene71576:CDS | 40.0% | |
| AGTGGCAGTAAAATTTCCGA+AGG | - | chr1.4:81681605-81681624 | MS.gene71576:CDS | 40.0% | |
| ATTACCAGGTAGGTTTCCTT+CGG | + | chr1.4:81681624-81681643 | None:intergenic | 40.0% | |
| CAACAACAAGAAGGAGAAGA+AGG | - | chr1.4:81680771-81680790 | MS.gene71576:CDS | 40.0% | |
| CACGATGAACAACAACAAGA+AGG | - | chr1.4:81680762-81680781 | MS.gene71576:CDS | 40.0% | |
| CATACATGAGGATATGGCAA+AGG | - | chr1.4:81682000-81682019 | MS.gene71576:CDS | 40.0% | |
| CCTGAAAAATCTTCGACTCT+TGG | - | chr1.4:81681686-81681705 | MS.gene71576:CDS | 40.0% | |
| CTTCAAGCTATTCTGTTGCT+TGG | - | chr1.4:81680516-81680535 | MS.gene71576:CDS | 40.0% | |
| GCACAATCATGACAAGAAGA+AGG | - | chr1.4:81680569-81680588 | MS.gene71576:CDS | 40.0% | |
| TGAAAGCAAAAGTGAAGAGG+TGG | - | chr1.4:81680899-81680918 | MS.gene71576:CDS | 40.0% | |
| TGTCATGATTGTGCTTAACC+TGG | + | chr1.4:81680563-81680582 | None:intergenic | 40.0% | |
| TTATCTGCTTCAACCTTACC+CGG | + | chr1.4:81680675-81680694 | None:intergenic | 40.0% | |
| ! | ACTGCCGATTATAACTGAGA+CGG | - | chr1.4:81680614-81680633 | MS.gene71576:CDS | 40.0% |
| ! | CCAAGAGTCGAAGATTTTTC+AGG | + | chr1.4:81681689-81681708 | None:intergenic | 40.0% |
| ! | GGATGTGTCTGATTTTCCAT+CGG | + | chr1.4:81681918-81681937 | None:intergenic | 40.0% |
| ! | TGATGAGTTGTCTCGTTTTC+AGG | + | chr1.4:81681239-81681258 | None:intergenic | 40.0% |
| ! | TTCATTTTCCTCCTGCTCTT+CGG | + | chr1.4:81680883-81680902 | None:intergenic | 40.0% |
| !! | ACGGATCAGATTCTGAAACT+TGG | - | chr1.4:81680633-81680652 | MS.gene71576:CDS | 40.0% |
| !! | TTGGCTATCAGGGTTTGTTT+TGG | + | chr1.4:81681393-81681412 | None:intergenic | 40.0% |
| !!! | TGTCTCGTTTTCAGGTTTTC+TGG | + | chr1.4:81681231-81681250 | None:intergenic | 40.0% |
| ACAAGGAGGATGAGGAAAAG+GGG | - | chr1.4:81681057-81681076 | MS.gene71576:CDS | 45.0% | |
| ACCACGACAATCATGAAGCT+CGG | - | chr1.4:81681093-81681112 | MS.gene71576:CDS | 45.0% | |
| ACCCTTGAACATCTCATCCT+CGG | + | chr1.4:81681876-81681895 | None:intergenic | 45.0% | |
| ACCGAGGATGAGATGTTCAA+GGG | - | chr1.4:81681872-81681891 | MS.gene71576:CDS | 45.0% | |
| AGACAAGGAGGATGAGGAAA+AGG | - | chr1.4:81681055-81681074 | MS.gene71576:CDS | 45.0% | |
| AGCTCGGGAAGAACATTACA+AGG | - | chr1.4:81681109-81681128 | MS.gene71576:CDS | 45.0% | |
| AGTGAAGACAACGTGCATGA+AGG | - | chr1.4:81680819-81680838 | MS.gene71576:CDS | 45.0% | |
| AGTGAAGAGGTGGAAGATGA+AGG | - | chr1.4:81680909-81680928 | MS.gene71576:CDS | 45.0% | |
| ATTTCCGAAGGAAACCTACC+TGG | - | chr1.4:81681617-81681636 | MS.gene71576:CDS | 45.0% | |
| GAATGAAGACAAGGAGGATG+AGG | - | chr1.4:81681049-81681068 | MS.gene71576:CDS | 45.0% | |
| GACAAGGAGGATGAGGAAAA+GGG | - | chr1.4:81681056-81681075 | MS.gene71576:CDS | 45.0% | |
| GATGACACGTCAAGTTCATC+TGG | - | chr1.4:81681479-81681498 | MS.gene71576:CDS | 45.0% | |
| GTGAAGACAACGTGCATGAA+GGG | - | chr1.4:81680820-81680839 | MS.gene71576:CDS | 45.0% | |
| TACCGAGGATGAGATGTTCA+AGG | - | chr1.4:81681871-81681890 | MS.gene71576:CDS | 45.0% | |
| TGAGACGGAGAATGAAGACA+AGG | - | chr1.4:81681040-81681059 | MS.gene71576:CDS | 45.0% | |
| TGGTAGAAAGGACCTTCTTC+CGG | - | chr1.4:81680653-81680672 | MS.gene71576:CDS | 45.0% | |
| ! | AAATGCGAGCTCTGATACCA+CGG | - | chr1.4:81681784-81681803 | MS.gene71576:CDS | 45.0% |
| ! | AGAAGAGGGTGATGATGAGA+CGG | - | chr1.4:81681025-81681044 | MS.gene71576:CDS | 45.0% |
| ! | TGAAAAGCACGAGGAAGAAG+AGG | - | chr1.4:81680698-81680717 | MS.gene71576:CDS | 45.0% |
| ! | TGATCGTGATGATGAGGTTG+TGG | - | chr1.4:81680983-81681002 | MS.gene71576:CDS | 45.0% |
| !! | ACAGATGGATTAGAGCAGAG+TGG | - | chr1.4:81681587-81681606 | MS.gene71576:CDS | 45.0% |
| AAAGGACCTTCTTCCGGGTA+AGG | - | chr1.4:81680659-81680678 | MS.gene71576:CDS | 50.0% | |
| AAGGAGGATGAGGAAAAGGG+GGG | - | chr1.4:81681059-81681078 | MS.gene71576:CDS | 50.0% | |
| ATCATGTGCCACAGCACTAG+AGG | + | chr1.4:81681144-81681163 | None:intergenic | 50.0% | |
| CAAGGAGGATGAGGAAAAGG+GGG | - | chr1.4:81681058-81681077 | MS.gene71576:CDS | 50.0% | |
| CCACGACAATCATGAAGCTC+GGG | - | chr1.4:81681094-81681113 | MS.gene71576:CDS | 50.0% | |
| CTTCAACCTTACCCGGAAGA+AGG | + | chr1.4:81680668-81680687 | None:intergenic | 50.0% | |
| GAAGAGGTGGAAGATGAAGG+AGG | - | chr1.4:81680912-81680931 | MS.gene71576:CDS | 50.0% | |
| GACGGAGAATGAAGACAAGG+AGG | - | chr1.4:81681043-81681062 | MS.gene71576:CDS | 50.0% | |
| GGTAGAAAGGACCTTCTTCC+GGG | - | chr1.4:81680654-81680673 | MS.gene71576:CDS | 50.0% | |
| TCAGAATACTGACGCTACCG+AGG | - | chr1.4:81681856-81681875 | MS.gene71576:CDS | 50.0% | |
| ! | CTGCTTCTGGTTGATCTACC+AGG | - | chr1.4:81680542-81680561 | MS.gene71576:CDS | 50.0% |
| ! | TGATGATGCCTCTAGTGCTG+TGG | - | chr1.4:81681133-81681152 | MS.gene71576:CDS | 50.0% |
| !! | TGTTGCTTGGTGTCTGCTTC+TGG | - | chr1.4:81680529-81680548 | MS.gene71576:CDS | 50.0% |
| AGCAGTAACTCGACAGGCAC+TGG | - | chr1.4:81681455-81681474 | MS.gene71576:CDS | 55.0% | |
| CCCGAGCTTCATGATTGTCG+TGG | + | chr1.4:81681097-81681116 | None:intergenic | 55.0% | |
| GACGCAAGCAGTAACTCGAC+AGG | - | chr1.4:81681449-81681468 | MS.gene71576:CDS | 55.0% | |
| GCAACTGCTGGTAAAGAGGC+TGG | - | chr1.4:81681341-81681360 | MS.gene71576:CDS | 55.0% | |
| ! | GGAGCTGCCACTCCATTTTC+AGG | + | chr1.4:81681668-81681687 | None:intergenic | 55.0% |
| TAAGCACGGAGCCGAAGAGC+AGG | - | chr1.4:81680869-81680888 | MS.gene71576:CDS | 60.0% | |
| GCACGGAGCCGAAGAGCAGG+AGG | - | chr1.4:81680872-81680891 | MS.gene71576:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 81680453 | 81682096 | 81680453 | ID=MS.gene71576 |
| chr1.4 | mRNA | 81680453 | 81682096 | 81680453 | ID=MS.gene71576.t1;Parent=MS.gene71576 |
| chr1.4 | exon | 81680453 | 81682096 | 81680453 | ID=MS.gene71576.t1.exon1;Parent=MS.gene71576.t1 |
| chr1.4 | CDS | 81680453 | 81682096 | 81680453 | ID=cds.MS.gene71576.t1;Parent=MS.gene71576.t1 |
| Gene Sequence |
| Protein sequence |
