Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71778.t1 | XP_013470155.1 | 99.2 | 854 | 7 | 0 | 1 | 854 | 1 | 854 | 0.00E+00 | 1716 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71778.t1 | O23617 | 77.4 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0e+00 | 1370.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71778.t1 | A0A072VRW8 | 99.2 | 854 | 7 | 0 | 1 | 854 | 1 | 854 | 0.0e+00 | 1716.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71778 | MS.gene026499 | PPI |
| MS.gene018379 | MS.gene71778 | PPI |
| MS.gene012447 | MS.gene71778 | PPI |
| MS.gene71778 | MS.gene031592 | PPI |
| MS.gene035660 | MS.gene71778 | PPI |
| MS.gene009143 | MS.gene71778 | PPI |
| MS.gene038603 | MS.gene71778 | PPI |
| MS.gene83030 | MS.gene71778 | PPI |
| MS.gene71003 | MS.gene71778 | PPI |
| MS.gene57938 | MS.gene71778 | PPI |
| MS.gene71778 | MS.gene006702 | PPI |
| MS.gene015639 | MS.gene71778 | PPI |
| MS.gene045478 | MS.gene71778 | PPI |
| MS.gene040931 | MS.gene71778 | PPI |
| MS.gene95835 | MS.gene71778 | PPI |
| MS.gene71778 | MS.gene95324 | PPI |
| MS.gene62674 | MS.gene71778 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71778.t1 | MTR_1g109620 | 99.180 | 854 | 7 | 0 | 1 | 854 | 1 | 854 | 0.0 | 1766 |
| MS.gene71778.t1 | MTR_8g105740 | 72.824 | 850 | 223 | 5 | 1 | 843 | 1 | 849 | 0.0 | 1312 |
| MS.gene71778.t1 | MTR_1g032730 | 72.535 | 852 | 224 | 6 | 1 | 843 | 1 | 851 | 0.0 | 1300 |
| MS.gene71778.t1 | MTR_4g080160 | 64.947 | 853 | 288 | 3 | 1 | 844 | 1 | 851 | 0.0 | 1204 |
| MS.gene71778.t1 | MTR_8g063790 | 66.982 | 845 | 271 | 2 | 1 | 843 | 1 | 839 | 0.0 | 1182 |
| MS.gene71778.t1 | MTR_4g129270 | 60.050 | 801 | 310 | 7 | 52 | 846 | 47 | 843 | 0.0 | 1003 |
| MS.gene71778.t1 | MTR_4g129270 | 57.784 | 758 | 311 | 6 | 1 | 754 | 1 | 753 | 0.0 | 902 |
| MS.gene71778.t1 | MTR_3g078210 | 53.766 | 770 | 353 | 2 | 83 | 850 | 3 | 771 | 0.0 | 845 |
| MS.gene71778.t1 | MTR_3g467030 | 49.082 | 599 | 275 | 3 | 61 | 659 | 1 | 569 | 0.0 | 576 |
| MS.gene71778.t1 | MTR_2g073260 | 34.279 | 811 | 464 | 20 | 1 | 792 | 74 | 834 | 2.41e-144 | 451 |
| MS.gene71778.t1 | MTR_0034s0170 | 35.714 | 756 | 423 | 21 | 58 | 792 | 83 | 796 | 8.20e-140 | 438 |
| MS.gene71778.t1 | MTR_8g087910 | 38.040 | 347 | 196 | 7 | 37 | 380 | 54 | 384 | 1.06e-70 | 239 |
| MS.gene71778.t1 | MTR_8g087930 | 32.877 | 438 | 244 | 14 | 387 | 806 | 10 | 415 | 6.68e-57 | 204 |
| MS.gene71778.t1 | MTR_3g076810 | 43.243 | 185 | 85 | 3 | 8 | 192 | 6 | 170 | 1.00e-45 | 162 |
| MS.gene71778.t1 | MTR_3g467040 | 53.271 | 107 | 50 | 0 | 483 | 589 | 110 | 216 | 1.28e-32 | 126 |
| MS.gene71778.t1 | MTR_3g467040 | 41.228 | 114 | 67 | 0 | 308 | 421 | 1 | 114 | 4.28e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71778.t1 | AT4G17770 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
| MS.gene71778.t1 | AT4G17770 | 77.374 | 853 | 189 | 3 | 1 | 850 | 1 | 852 | 0.0 | 1410 |
| MS.gene71778.t1 | AT1G68020 | 71.114 | 862 | 224 | 6 | 1 | 843 | 1 | 856 | 0.0 | 1301 |
| MS.gene71778.t1 | AT1G68020 | 71.114 | 862 | 224 | 6 | 1 | 843 | 1 | 856 | 0.0 | 1301 |
| MS.gene71778.t1 | AT1G06410 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1181 |
| MS.gene71778.t1 | AT1G06410 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1181 |
| MS.gene71778.t1 | AT1G06410 | 67.217 | 848 | 266 | 4 | 1 | 844 | 1 | 840 | 0.0 | 1181 |
| MS.gene71778.t1 | AT1G23870 | 63.860 | 855 | 307 | 1 | 1 | 853 | 1 | 855 | 0.0 | 1158 |
| MS.gene71778.t1 | AT1G70290 | 62.426 | 841 | 309 | 3 | 1 | 839 | 1 | 836 | 0.0 | 1120 |
| MS.gene71778.t1 | AT1G60140 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| MS.gene71778.t1 | AT1G60140 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| MS.gene71778.t1 | AT1G60140 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| MS.gene71778.t1 | AT1G60140 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| MS.gene71778.t1 | AT1G60140 | 61.091 | 843 | 326 | 1 | 1 | 841 | 1 | 843 | 0.0 | 1109 |
| MS.gene71778.t1 | AT1G68020 | 71.701 | 682 | 170 | 5 | 1 | 665 | 1 | 676 | 0.0 | 1045 |
| MS.gene71778.t1 | AT2G18700 | 58.392 | 846 | 338 | 7 | 1 | 842 | 1 | 836 | 0.0 | 1043 |
| MS.gene71778.t1 | AT1G70290 | 58.621 | 841 | 303 | 4 | 1 | 839 | 1 | 798 | 0.0 | 1030 |
| MS.gene71778.t1 | AT1G60140 | 61.804 | 754 | 288 | 0 | 1 | 754 | 1 | 754 | 0.0 | 1007 |
| MS.gene71778.t1 | AT1G16980 | 34.761 | 817 | 462 | 26 | 60 | 850 | 13 | 784 | 1.28e-145 | 450 |
| MS.gene71778.t1 | AT1G78580 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.63e-141 | 442 |
| MS.gene71778.t1 | AT1G78580 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.63e-141 | 442 |
| MS.gene71778.t1 | AT1G78580 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.63e-141 | 442 |
| MS.gene71778.t1 | AT1G78580 | 34.875 | 757 | 431 | 19 | 57 | 792 | 90 | 805 | 3.63e-141 | 442 |
| MS.gene71778.t1 | AT4G27550 | 33.976 | 830 | 450 | 27 | 56 | 837 | 1 | 780 | 3.20e-137 | 427 |
| MS.gene71778.t1 | AT4G27550 | 34.135 | 832 | 455 | 28 | 56 | 837 | 1 | 789 | 1.52e-136 | 426 |
| MS.gene71778.t1 | AT1G16980 | 35.220 | 636 | 353 | 20 | 60 | 681 | 13 | 603 | 6.65e-118 | 373 |
Find 196 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGATAGCTTTCTAAAGTT+TGG | 0.197254 | 1.3:+74664925 | None:intergenic |
| CTTCTGAATTCTGACCTTAT+AGG | 0.215099 | 1.3:-74665885 | MS.gene71778:CDS |
| AGATGCTGGGGAATTGGTTT+TGG | 0.230491 | 1.3:-74664976 | MS.gene71778:CDS |
| CCACCAGCATGCTCTTCTTT+TGG | 0.238177 | 1.3:+74665229 | None:intergenic |
| AGGAATCAGCTTAAAACTTT+TGG | 0.239280 | 1.3:-74665598 | MS.gene71778:CDS |
| TTCTGAATTCTGACCTTATA+GGG | 0.267422 | 1.3:-74665884 | MS.gene71778:CDS |
| TGTGTCTTCCAAGTAATATT+TGG | 0.281526 | 1.3:+74663479 | None:intergenic |
| CTTCCTGTTGGTATTCATAT+AGG | 0.288144 | 1.3:-74665735 | MS.gene71778:CDS |
| CATCATTAAGCGGCGCGATT+CGG | 0.290810 | 1.3:-74665182 | MS.gene71778:CDS |
| CAAGCACCGAGCGATTCTTT+TGG | 0.298713 | 1.3:-74664872 | MS.gene71778:CDS |
| CCAAGAGTGGCAACTGTTGC+TGG | 0.299481 | 1.3:-74666557 | MS.gene71778:CDS |
| CACAATGAAAACACAATTCT+TGG | 0.302805 | 1.3:+74664759 | None:intergenic |
| GAATTTGCAGACCGAGATTT+CGG | 0.306462 | 1.3:-74664347 | MS.gene71778:CDS |
| CAGATAGCTTTCTAAAGTTT+GGG | 0.314076 | 1.3:+74664926 | None:intergenic |
| TCCTTTCCGCGGCCTCTAGC+AGG | 0.317442 | 1.3:+74665507 | None:intergenic |
| TTGCTTAATGAGGAGATAAC+TGG | 0.325875 | 1.3:+74663388 | None:intergenic |
| TACGCACGATGTTGCATATT+GGG | 0.340179 | 1.3:-74665052 | MS.gene71778:CDS |
| CCAAACCAGAGCACTCTCTT+TGG | 0.342936 | 1.3:+74664376 | None:intergenic |
| TCTTTCCTTTGTGCCTTCAA+TGG | 0.344898 | 1.3:+74666434 | None:intergenic |
| TTTGGATTATGATAGTACTA+TGG | 0.345249 | 1.3:-74664854 | MS.gene71778:CDS |
| AGCTATGGATTCCGCCTTAA+TGG | 0.346795 | 1.3:-74665127 | MS.gene71778:CDS |
| GGTTTAACTTCCACAATGTA+TGG | 0.356426 | 1.3:+74664248 | None:intergenic |
| GCAACATCATCTTGCTCAAT+TGG | 0.362213 | 1.3:+74666293 | None:intergenic |
| TCTGTATATAACTGCATAAC+TGG | 0.363196 | 1.3:+74664425 | None:intergenic |
| AGGAGGAGATGCTGGGGAAT+TGG | 0.363586 | 1.3:-74664982 | MS.gene71778:CDS |
| AAGCTTCCCATTCTTCAGTA+TGG | 0.363738 | 1.3:+74664489 | None:intergenic |
| AGATCAGATGAGGACATGTT+TGG | 0.364020 | 1.3:-74663582 | MS.gene71778:CDS |
| TTCAGACTCCGGGACCATTA+AGG | 0.365240 | 1.3:+74665113 | None:intergenic |
| CTTCCGCTGTCGCCTGATCT+TGG | 0.368992 | 1.3:-74666155 | MS.gene71778:CDS |
| CTAAGAAGTTCATCTCTAAC+AGG | 0.372241 | 1.3:+74665912 | None:intergenic |
| CCAATGCATAGAACAAAATC+TGG | 0.378049 | 1.3:+74663612 | None:intergenic |
| GTTGTATCGATCAAGATTAC+AGG | 0.378659 | 1.3:+74665408 | None:intergenic |
| GGTTCATGACTACCACTTGA+TGG | 0.384948 | 1.3:-74666030 | MS.gene71778:CDS |
| ATCATCTGAGGAGGAGATGC+TGG | 0.385858 | 1.3:-74664990 | MS.gene71778:CDS |
| GTCGATTTGATCGATCTCTT+TGG | 0.389308 | 1.3:-74666130 | MS.gene71778:CDS |
| TTTGTTGCAGGGTGTGAGTA+AGG | 0.391370 | 1.3:-74663685 | MS.gene71778:intron |
| CTTTCGGTCGTGAGAAGAAA+AGG | 0.392381 | 1.3:-74666583 | MS.gene71778:CDS |
| ATCTGTTTCCAGTCAAAATC+AGG | 0.395840 | 1.3:+74664455 | None:intergenic |
| GTTTCTGTAAGCAACATCTA+TGG | 0.403151 | 1.3:-74666196 | MS.gene71778:CDS |
| GCACAAAGGAAAGAGGAAAA+TGG | 0.406553 | 1.3:-74666425 | MS.gene71778:CDS |
| ACATTGTTTCAGCTTATAAG+AGG | 0.408474 | 1.3:-74664897 | MS.gene71778:CDS |
| GATCATCCTCTCTTGAGAAA+TGG | 0.409237 | 1.3:+74666475 | None:intergenic |
| AAAAGGATAAACGACACATT+TGG | 0.409911 | 1.3:-74665447 | MS.gene71778:CDS |
| ATCATTAAGCGGCGCGATTC+GGG | 0.410018 | 1.3:-74665181 | MS.gene71778:CDS |
| TAAGGAACTTCTTGATCATC+TGG | 0.414096 | 1.3:-74664312 | MS.gene71778:CDS |
| TGCGTCATGAGAAGCATTAT+AGG | 0.414289 | 1.3:-74665083 | MS.gene71778:CDS |
| GATCAGATGAGGACATGTTT+GGG | 0.414515 | 1.3:-74663581 | MS.gene71778:CDS |
| CGAAAGTATGAAACCCTATA+AGG | 0.416886 | 1.3:+74665871 | None:intergenic |
| GTACGCACGATGTTGCATAT+TGG | 0.417861 | 1.3:-74665053 | MS.gene71778:CDS |
| CCAGCAACAGTTGCCACTCT+TGG | 0.421922 | 1.3:+74666557 | None:intergenic |
| TCCCAACATTCTACTGCAAC+AGG | 0.422981 | 1.3:+74665827 | None:intergenic |
| TCTGATAACAATGCAACAAA+AGG | 0.423959 | 1.3:-74663643 | MS.gene71778:CDS |
| TCCTGTTGCAGTAGAATGTT+GGG | 0.425459 | 1.3:-74665828 | MS.gene71778:CDS |
| AATGAGGGGAAAGGTTGTTC+TGG | 0.426046 | 1.3:-74665544 | MS.gene71778:CDS |
| ATCAGAACCAACACTGTTGT+TGG | 0.428130 | 1.3:+74666508 | None:intergenic |
| CCAAAGAGAGTGCTCTGGTT+TGG | 0.428765 | 1.3:-74664376 | MS.gene71778:CDS |
| TCATGCGGCTCGCCGTCTTT+CGG | 0.430507 | 1.3:-74666599 | MS.gene71778:CDS |
| AAGTAATATTTGGCTTTGCT+TGG | 0.430940 | 1.3:+74663489 | None:intergenic |
| CGGACGAAGGAAAAGGACTA+TGG | 0.431241 | 1.3:+74665952 | None:intergenic |
| GATGTTGAAACAATCTATAT+TGG | 0.433844 | 1.3:-74666338 | MS.gene71778:CDS |
| GCGTAGCTTCTTGCAGGATC+TGG | 0.434843 | 1.3:-74665028 | MS.gene71778:CDS |
| AGGATTTCGAGTAATAGCTT+TGG | 0.436633 | 1.3:-74664950 | MS.gene71778:CDS |
| ACCCAAACAAAATCCTCATC+AGG | 0.437641 | 1.3:+74666050 | None:intergenic |
| CGAATCGCGCCGCTTAATGA+TGG | 0.438856 | 1.3:+74665183 | None:intergenic |
| TTGGGCGCGTAGCTTCTTGC+AGG | 0.441346 | 1.3:-74665034 | MS.gene71778:CDS |
| TCAAATCGACCACCAAGATC+AGG | 0.444062 | 1.3:+74666143 | None:intergenic |
| AAGGTCAAACTGTGATGCTT+GGG | 0.444131 | 1.3:-74665644 | MS.gene71778:CDS |
| CAAAAGAATCGCTCGGTGCT+TGG | 0.449492 | 1.3:+74664873 | None:intergenic |
| TCACAGTTTGACCTTTGAAC+TGG | 0.450018 | 1.3:+74665652 | None:intergenic |
| AACGACACATTTGGAAGGCC+TGG | 0.452363 | 1.3:-74665438 | MS.gene71778:CDS |
| GGAAAGAGGAAAATGGTAAG+TGG | 0.457394 | 1.3:-74666418 | MS.gene71778:CDS |
| CTCCTGTTGCAGTAGAATGT+TGG | 0.457602 | 1.3:-74665829 | MS.gene71778:CDS |
| CAAGAGAGGATGATCATTGT+TGG | 0.460566 | 1.3:-74666467 | MS.gene71778:CDS |
| TGGTAACCAGCTTCCATTGA+AGG | 0.461364 | 1.3:-74666447 | MS.gene71778:CDS |
| TTACAGCTGAAAGATGGTCT+TGG | 0.463158 | 1.3:-74666365 | MS.gene71778:CDS |
| AAGACCTATGTAGCCTCGCT+TGG | 0.466700 | 1.3:+74665791 | None:intergenic |
| AGCAGTTTGTTCAGAAGCAT+TGG | 0.467175 | 1.3:+74663425 | None:intergenic |
| AGATTTAACAGGGCAAGGCT+TGG | 0.467489 | 1.3:-74665984 | MS.gene71778:CDS |
| GACAAGCCATACTGAAGAAT+GGG | 0.468184 | 1.3:-74664495 | MS.gene71778:CDS |
| CAAGGAAACACGTCCGCAAT+GGG | 0.469994 | 1.3:+74663528 | None:intergenic |
| CTACAAATGATATACTCATA+TGG | 0.471654 | 1.3:+74665300 | None:intergenic |
| CTGGTGGTGTCTGAATTCAT+TGG | 0.473518 | 1.3:-74665213 | MS.gene71778:CDS |
| ATTTGATCGATCTCTTTGGC+AGG | 0.477042 | 1.3:-74666126 | MS.gene71778:CDS |
| AAAGGTCAAACTGTGATGCT+TGG | 0.478423 | 1.3:-74665645 | MS.gene71778:CDS |
| AAACTTATGCAACCGTGAAA+AGG | 0.479354 | 1.3:-74665464 | MS.gene71778:CDS |
| CAATCCAAGCGAGGCTACAT+AGG | 0.479480 | 1.3:-74665795 | MS.gene71778:CDS |
| TTTGTGCCTTCAATGGAAGC+TGG | 0.479814 | 1.3:+74666441 | None:intergenic |
| TACATAGGTCTTGAGTACTA+TGG | 0.482799 | 1.3:-74665780 | MS.gene71778:CDS |
| TTAGAAAAGCTTGCTTAATG+AGG | 0.484009 | 1.3:+74663378 | None:intergenic |
| TATATCTCGGACGAAGGAAA+AGG | 0.486903 | 1.3:+74665945 | None:intergenic |
| GAATCGCGCCGCTTAATGAT+GGG | 0.487141 | 1.3:+74665184 | None:intergenic |
| CGATACAACACTCCAGAGTT+GGG | 0.487205 | 1.3:-74665394 | MS.gene71778:CDS |
| AAGCGATTCTCTCCCAACTC+TGG | 0.499258 | 1.3:+74665382 | None:intergenic |
| TGATGCTGTTGCTGAAGCTA+TGG | 0.500313 | 1.3:-74665142 | MS.gene71778:CDS |
| ATGGTAAGTGGGAATTCACT+TGG | 0.502564 | 1.3:-74666406 | MS.gene71778:CDS |
| AAGCAAAGCCAAATATTACT+TGG | 0.502945 | 1.3:-74663487 | MS.gene71778:CDS |
| CTTGTTACAGCAGTGAGAGA+TGG | 0.504181 | 1.3:-74665336 | MS.gene71778:CDS |
| GAGCGAGCAAAATGGCTTCA+AGG | 0.504643 | 1.3:-74666649 | None:intergenic |
| GACGTGTTTCCTTGCACCGT+TGG | 0.505796 | 1.3:-74663519 | MS.gene71778:CDS |
| TGGCCTATATGAATACCAAC+AGG | 0.508722 | 1.3:+74665732 | None:intergenic |
| CATCTCTAACAGGAAGGGTT+CGG | 0.508766 | 1.3:+74665922 | None:intergenic |
| AAGATTACAGGTGTGTATCC+AGG | 0.509121 | 1.3:+74665420 | None:intergenic |
| TCGATACAACACTCCAGAGT+TGG | 0.509920 | 1.3:-74665395 | MS.gene71778:CDS |
| GGACAAGCCATACTGAAGAA+TGG | 0.510330 | 1.3:-74664496 | MS.gene71778:CDS |
| AGCTCAGGTGGAAGGAAAGT+TGG | 0.512723 | 1.3:+74666239 | None:intergenic |
| GAAAGAGATTTAACAGGGCA+AGG | 0.513388 | 1.3:-74665989 | MS.gene71778:CDS |
| CTGATAACAATGCAACAAAA+GGG | 0.514427 | 1.3:-74663642 | MS.gene71778:CDS |
| GTGGGAATTCACTTGGGATG+AGG | 0.515265 | 1.3:-74666399 | MS.gene71778:CDS |
| ATGGAAACAGCTTCAGCACT+AGG | 0.515512 | 1.3:+74664805 | None:intergenic |
| TTGTTGCAGGGTGTGAGTAA+GGG | 0.516408 | 1.3:-74663684 | MS.gene71778:intron |
| TTCTTCTCACGACCGAAAGA+CGG | 0.519257 | 1.3:+74666587 | None:intergenic |
| TTCATACTTTCGACTATGCT+AGG | 0.522500 | 1.3:-74665860 | MS.gene71778:CDS |
| CTTCTTGCAGGATCTGGAAA+GGG | 0.524177 | 1.3:-74665022 | MS.gene71778:CDS |
| CTTGACATGAACCGAAATCT+CGG | 0.524650 | 1.3:+74664336 | None:intergenic |
| GATAGTACTATGGTGCAGCC+TGG | 0.524793 | 1.3:-74664844 | MS.gene71778:CDS |
| TCATCTGAGGAGGAGATGCT+GGG | 0.527479 | 1.3:-74664989 | MS.gene71778:CDS |
| CATTGTGGAAGTTAAACCTC+AGG | 0.529575 | 1.3:-74664243 | MS.gene71778:intron |
| AGCATTAAGATTCTTCCTGT+TGG | 0.529787 | 1.3:-74665747 | MS.gene71778:CDS |
| TGAAGTAAGATCTAACAAGT+TGG | 0.532544 | 1.3:+74666619 | None:intergenic |
| GAGCCTGTTTCAGTTAAAAG+TGG | 0.534096 | 1.3:-74664272 | MS.gene71778:CDS |
| GCAAACCCTGCTAGAGGCCG+CGG | 0.535783 | 1.3:-74665513 | MS.gene71778:CDS |
| GCAAGGAAACACGTCCGCAA+TGG | 0.535831 | 1.3:+74663527 | None:intergenic |
| CCTTTCCGCGGCCTCTAGCA+GGG | 0.538093 | 1.3:+74665508 | None:intergenic |
| CCGCTGTCGCCTGATCTTGG+TGG | 0.540431 | 1.3:-74666152 | MS.gene71778:CDS |
| GGTGTTGCACTAATTGATCC+AGG | 0.542444 | 1.3:+74664826 | None:intergenic |
| TTTACAACATGCTGAAATGA+GGG | 0.544384 | 1.3:-74665559 | MS.gene71778:CDS |
| GATTCATGACTGACTCAAGC+TGG | 0.544391 | 1.3:+74665712 | None:intergenic |
| GATGACATGGATATCTTCAA+AGG | 0.545640 | 1.3:-74665618 | MS.gene71778:CDS |
| GGATTCCGCCTTAATGGTCC+CGG | 0.546381 | 1.3:-74665121 | MS.gene71778:CDS |
| GAAAGAGGAAAATGGTAAGT+GGG | 0.548871 | 1.3:-74666417 | MS.gene71778:CDS |
| TAGAATTTAGTGAAAAGCTC+AGG | 0.548984 | 1.3:+74666224 | None:intergenic |
| AGAGAAACACTCTCACTGAA+TGG | 0.549371 | 1.3:-74664726 | MS.gene71778:CDS |
| TTTCGGTTCATGTCAAGCTA+AGG | 0.551647 | 1.3:-74664330 | MS.gene71778:CDS |
| CTTGGACTTGCTGCAGAACA+CGG | 0.553602 | 1.3:-74664685 | MS.gene71778:CDS |
| GTTTAACTTCCACAATGTAT+GGG | 0.566536 | 1.3:+74664249 | None:intergenic |
| ACTGCACAAGCTGTTCAAGA+TGG | 0.567111 | 1.3:+74664786 | None:intergenic |
| TAGTGAAAAGCTCAGGTGGA+AGG | 0.568307 | 1.3:+74666231 | None:intergenic |
| CATAATCCAAAAGAATCGCT+CGG | 0.569386 | 1.3:+74664866 | None:intergenic |
| CCCTGCTAGAGGCCGCGGAA+AGG | 0.571655 | 1.3:-74665508 | MS.gene71778:CDS |
| GCTTCTTGCAGGATCTGGAA+AGG | 0.572169 | 1.3:-74665023 | MS.gene71778:CDS |
| CGTCCTCCATTTCTCAAGAG+AGG | 0.575029 | 1.3:-74666481 | MS.gene71778:CDS |
| ATTGAAGGCACAAAGGAAAG+AGG | 0.575033 | 1.3:-74666432 | MS.gene71778:CDS |
| CTCTCTTGAGAAATGGAGGA+CGG | 0.575333 | 1.3:+74666482 | None:intergenic |
| GAAGTTCATCTCTAACAGGA+AGG | 0.577715 | 1.3:+74665916 | None:intergenic |
| TTGTTAGATCTTACTTCATG+CGG | 0.579234 | 1.3:-74666614 | MS.gene71778:CDS |
| AATATTTGCTGATAAAGTGA+TGG | 0.579350 | 1.3:-74666084 | MS.gene71778:CDS |
| GGCTGCTCCCCATCATTAAG+CGG | 0.581670 | 1.3:-74665192 | MS.gene71778:CDS |
| TGCTTAATGAGGAGATAACT+GGG | 0.586765 | 1.3:+74663389 | None:intergenic |
| TTGTTACAGCAGTGAGAGAT+GGG | 0.586812 | 1.3:-74665335 | MS.gene71778:CDS |
| GCGCGATTCGGGTGAATCCG+TGG | 0.589497 | 1.3:-74665170 | MS.gene71778:CDS |
| GATGCTTGGGGTGGATGACA+TGG | 0.591172 | 1.3:-74665631 | MS.gene71778:CDS |
| AGAGTCCAAAGAGAGTGCTC+TGG | 0.593330 | 1.3:-74664381 | MS.gene71778:CDS |
| GAAGAAAAGGCTTCCAAGAG+TGG | 0.594619 | 1.3:-74666570 | MS.gene71778:CDS |
| AGGAAGGGTTCGGTATATCT+CGG | 0.595173 | 1.3:+74665932 | None:intergenic |
| TCTTTCTGAGACAGAAAGCA+AGG | 0.595405 | 1.3:-74665691 | MS.gene71778:CDS |
| CATCCTCTCTTGAGAAATGG+AGG | 0.595883 | 1.3:+74666478 | None:intergenic |
| GAGCTAAGAAACCAGTTCAA+AGG | 0.597173 | 1.3:-74665663 | MS.gene71778:CDS |
| TAAAAGTGGCCCATACATTG+TGG | 0.597276 | 1.3:-74664258 | MS.gene71778:CDS |
| AAGTTCATCTCTAACAGGAA+GGG | 0.599310 | 1.3:+74665917 | None:intergenic |
| TTGGGGTAATAACAAGTGCA+AGG | 0.603403 | 1.3:-74663563 | MS.gene71778:CDS |
| TATCCAAAAGAAGAGCATGC+TGG | 0.604070 | 1.3:-74665232 | MS.gene71778:CDS |
| CCACCAAGATCAGGCGACAG+CGG | 0.612409 | 1.3:+74666152 | None:intergenic |
| GATGAAACCAACAACAGTGT+TGG | 0.613941 | 1.3:-74666515 | MS.gene71778:CDS |
| GCAACAGCATCAATATTCCA+CGG | 0.614265 | 1.3:+74665153 | None:intergenic |
| TGGTAAGTGGGAATTCACTT+GGG | 0.618013 | 1.3:-74666405 | MS.gene71778:CDS |
| GTTCGGTATATCTCGGACGA+AGG | 0.622286 | 1.3:+74665939 | None:intergenic |
| ACATGCTGAAATGAGGGGAA+AGG | 0.622463 | 1.3:-74665553 | MS.gene71778:CDS |
| AATTTAGTGAAAAGCTCAGG+TGG | 0.623435 | 1.3:+74666227 | None:intergenic |
| GGAAGTTATCAACCCTGATG+AGG | 0.625660 | 1.3:-74666063 | MS.gene71778:CDS |
| AAACTTTAGAAAGCTATCTG+TGG | 0.628781 | 1.3:-74664923 | MS.gene71778:CDS |
| AGCTTCCATTGAAGGCACAA+AGG | 0.630490 | 1.3:-74666439 | MS.gene71778:CDS |
| AATCGCGCCGCTTAATGATG+GGG | 0.632508 | 1.3:+74665185 | None:intergenic |
| TGGGGTAATAACAAGTGCAA+GGG | 0.633008 | 1.3:-74663562 | MS.gene71778:CDS |
| TTACAACATGCTGAAATGAG+GGG | 0.634606 | 1.3:-74665558 | MS.gene71778:CDS |
| GGAAGCATGTAGTGAAACAA+AGG | 0.636066 | 1.3:+74666173 | None:intergenic |
| CTTCTTGCACATCCTTTCCG+CGG | 0.637125 | 1.3:+74665496 | None:intergenic |
| CCCAAACAAAATCCTCATCA+GGG | 0.640182 | 1.3:+74666051 | None:intergenic |
| TGGTGATGACAGATCAGATG+AGG | 0.641223 | 1.3:-74663592 | MS.gene71778:CDS |
| GAGTATATCATTTGTAGACA+AGG | 0.642548 | 1.3:-74665294 | MS.gene71778:CDS |
| GGCATCTCTATCGCCCATTG+CGG | 0.645098 | 1.3:-74663541 | MS.gene71778:CDS |
| CATCTGAGGAGGAGATGCTG+GGG | 0.645178 | 1.3:-74664988 | MS.gene71778:CDS |
| TTTGAGAAAGAGATTTAACA+GGG | 0.647753 | 1.3:-74665994 | MS.gene71778:CDS |
| CAAATCGCAAACCCTGCTAG+AGG | 0.649493 | 1.3:-74665519 | MS.gene71778:CDS |
| AATCGCTTACTATGCAATTG+CGG | 0.650771 | 1.3:-74665367 | MS.gene71778:CDS |
| CTTGTAGAGATCATCTGAGG+AGG | 0.654064 | 1.3:-74664999 | MS.gene71778:CDS |
| GGATAAACGACACATTTGGA+AGG | 0.660498 | 1.3:-74665443 | MS.gene71778:CDS |
| TTATATACAGAAACTACTGA+TGG | 0.662521 | 1.3:-74664413 | MS.gene71778:CDS |
| CCAAAAGAAGAGCATGCTGG+TGG | 0.662803 | 1.3:-74665229 | MS.gene71778:CDS |
| AGACTCCGGGACCATTAAGG+CGG | 0.664593 | 1.3:+74665116 | None:intergenic |
| ATCAGATGAGGACATGTTTG+GGG | 0.667558 | 1.3:-74663580 | MS.gene71778:CDS |
| TCAAACTGTGATGCTTGGGG+TGG | 0.668780 | 1.3:-74665640 | MS.gene71778:CDS |
| ACGAAGGAAAAGGACTATGG+AGG | 0.674332 | 1.3:+74665955 | None:intergenic |
| GGGCTTGTAGAGATCATCTG+AGG | 0.683476 | 1.3:-74665002 | MS.gene71778:CDS |
| ATGTTGGAAGAACCATCAAG+TGG | 0.693809 | 1.3:+74666018 | None:intergenic |
| AGGTCAAACTGTGATGCTTG+GGG | 0.701625 | 1.3:-74665643 | MS.gene71778:CDS |
| ATTGCTTATCAATCCAAGCG+AGG | 0.704535 | 1.3:-74665804 | MS.gene71778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATGATTAATAATACTA+TGG | - | chr1.3:74666214-74666233 | MS.gene71778:CDS | 15.0% |
| !! | GATCTTTAGTTAAAATAAAA+AGG | - | chr1.3:74665913-74665932 | MS.gene71778:CDS | 15.0% |
| !!! | AAATAAATTGTTTTCTTTGA+TGG | - | chr1.3:74665464-74665483 | MS.gene71778:CDS | 15.0% |
| !! | ATTAAGAAACAGACATTTAT+CGG | + | chr1.3:74665979-74665998 | None:intergenic | 20.0% |
| !! | TTGAAGTTAATTCTAATCTT+TGG | - | chr1.3:74666241-74666260 | MS.gene71778:CDS | 20.0% |
| !! | TTTGTATACTACTTATTGTT+GGG | - | chr1.3:74665883-74665902 | MS.gene71778:CDS | 20.0% |
| !!! | AAATTTATCCTTTTTTTTCC+AGG | - | chr1.3:74665513-74665532 | MS.gene71778:CDS | 20.0% |
| ! | AATCTCTTTCTCAAAAATGT+TGG | + | chr1.3:74664031-74664050 | None:intergenic | 25.0% |
| ! | AGTTCATGATCTTAGAAATA+AGG | + | chr1.3:74666290-74666309 | None:intergenic | 25.0% |
| ! | ATAAAAAGGATACTTGAATC+TGG | - | chr1.3:74665927-74665946 | MS.gene71778:CDS | 25.0% |
| ! | CTACAAATGATATACTCATA+TGG | + | chr1.3:74664733-74664752 | None:intergenic | 25.0% |
| ! | GATGTTGAAACAATCTATAT+TGG | - | chr1.3:74663692-74663711 | MS.gene71778:intron | 25.0% |
| ! | GTTTGTATACTACTTATTGT+TGG | - | chr1.3:74665882-74665901 | MS.gene71778:CDS | 25.0% |
| ! | TTATATACAGAAACTACTGA+TGG | - | chr1.3:74665617-74665636 | MS.gene71778:CDS | 25.0% |
| ! | TTTAAAAGAGTGAGTTCATT+TGG | + | chr1.3:74665417-74665436 | None:intergenic | 25.0% |
| ! | TTTGAGAAAGAGATTTAACA+GGG | - | chr1.3:74664036-74664055 | MS.gene71778:intron | 25.0% |
| ! | TTTGGATTATGATAGTACTA+TGG | - | chr1.3:74665176-74665195 | MS.gene71778:CDS | 25.0% |
| !! | AATATTTGCTGATAAAGTGA+TGG | - | chr1.3:74663946-74663965 | MS.gene71778:intron | 25.0% |
| !! | CTTTTCACTAAATTCTATCA+TGG | - | chr1.3:74663812-74663831 | MS.gene71778:intron | 25.0% |
| !!! | ACTTTTTTATTACTAACCTG+AGG | + | chr1.3:74665806-74665825 | None:intergenic | 25.0% |
| !!! | TTTTGAGAAAGAGATTTAAC+AGG | - | chr1.3:74664035-74664054 | MS.gene71778:intron | 25.0% |
| AAAAGGATAAACGACACATT+TGG | - | chr1.3:74664583-74664602 | MS.gene71778:intron | 30.0% | |
| AAGCAAAGCCAAATATTACT+TGG | - | chr1.3:74666543-74666562 | MS.gene71778:CDS | 30.0% | |
| ACATTGTTTCAGCTTATAAG+AGG | - | chr1.3:74665133-74665152 | MS.gene71778:CDS | 30.0% | |
| CACAATGAAAACACAATTCT+TGG | + | chr1.3:74665274-74665293 | None:intergenic | 30.0% | |
| CTGATAACAATGCAACAAAA+GGG | - | chr1.3:74666388-74666407 | MS.gene71778:CDS | 30.0% | |
| GAGTATATCATTTGTAGACA+AGG | - | chr1.3:74664736-74664755 | MS.gene71778:CDS | 30.0% | |
| TAGAATTTAGTGAAAAGCTC+AGG | + | chr1.3:74663809-74663828 | None:intergenic | 30.0% | |
| TCATGATCTTAGAAATAAGG+AGG | + | chr1.3:74666287-74666306 | None:intergenic | 30.0% | |
| TCGTAGATCAAAGAAAATAG+CGG | + | chr1.3:74666164-74666183 | None:intergenic | 30.0% | |
| TCTGATAACAATGCAACAAA+AGG | - | chr1.3:74666387-74666406 | MS.gene71778:CDS | 30.0% | |
| TCTGTATATAACTGCATAAC+TGG | + | chr1.3:74665608-74665627 | None:intergenic | 30.0% | |
| TGAAGTAAGATCTAACAAGT+TGG | + | chr1.3:74663414-74663433 | None:intergenic | 30.0% | |
| TGTGTCTTCCAAGTAATATT+TGG | + | chr1.3:74666554-74666573 | None:intergenic | 30.0% | |
| TTATGCATGAAAGAATGTTG+TGG | - | chr1.3:74665438-74665457 | MS.gene71778:CDS | 30.0% | |
| TTCTGAATTCTGACCTTATA+GGG | - | chr1.3:74664146-74664165 | MS.gene71778:intron | 30.0% | |
| TTGTTAGATCTTACTTCATG+CGG | - | chr1.3:74663416-74663435 | MS.gene71778:CDS | 30.0% | |
| TTTACAACATGCTGAAATGA+GGG | - | chr1.3:74664471-74664490 | MS.gene71778:CDS | 30.0% | |
| ! | AAACTTTAGAAAGCTATCTG+TGG | - | chr1.3:74665107-74665126 | MS.gene71778:CDS | 30.0% |
| ! | AATTGTGTTTTCATTGTGAG+TGG | - | chr1.3:74665276-74665295 | MS.gene71778:CDS | 30.0% |
| ! | AGGAATCAGCTTAAAACTTT+TGG | - | chr1.3:74664432-74664451 | MS.gene71778:CDS | 30.0% |
| ! | GAGAAGATAGATGAGATTTT+AGG | - | chr1.3:74664763-74664782 | MS.gene71778:CDS | 30.0% |
| ! | GTTTAACTTCCACAATGTAT+GGG | + | chr1.3:74665784-74665803 | None:intergenic | 30.0% |
| ! | TGGTCATGAATTCTTTTGAA+GGG | - | chr1.3:74666261-74666280 | MS.gene71778:CDS | 30.0% |
| ! | TTGGTCATGAATTCTTTTGA+AGG | - | chr1.3:74666260-74666279 | MS.gene71778:CDS | 30.0% |
| ! | TTTTACAACATGCTGAAATG+AGG | - | chr1.3:74664470-74664489 | MS.gene71778:CDS | 30.0% |
| ! | TTTTCTTCTTGTGAAAAGCT+TGG | - | chr1.3:74665327-74665346 | MS.gene71778:CDS | 30.0% |
| !! | AAGTAATATTTGGCTTTGCT+TGG | + | chr1.3:74666544-74666563 | None:intergenic | 30.0% |
| !! | ACAGATAGCTTTCTAAAGTT+TGG | + | chr1.3:74665108-74665127 | None:intergenic | 30.0% |
| !! | CAGATAGCTTTCTAAAGTTT+GGG | + | chr1.3:74665107-74665126 | None:intergenic | 30.0% |
| AAACTTATGCAACCGTGAAA+AGG | - | chr1.3:74664566-74664585 | MS.gene71778:intron | 35.0% | |
| AAGTTCATCTCTAACAGGAA+GGG | + | chr1.3:74664116-74664135 | None:intergenic | 35.0% | |
| AATCGCTTACTATGCAATTG+CGG | - | chr1.3:74664663-74664682 | MS.gene71778:intron | 35.0% | |
| AATTTAGTGAAAAGCTCAGG+TGG | + | chr1.3:74663806-74663825 | None:intergenic | 35.0% | |
| AGCATTAAGATTCTTCCTGT+TGG | - | chr1.3:74664283-74664302 | MS.gene71778:CDS | 35.0% | |
| ATCTGTTTCCAGTCAAAATC+AGG | + | chr1.3:74665578-74665597 | None:intergenic | 35.0% | |
| CATAATCCAAAAGAATCGCT+CGG | + | chr1.3:74665167-74665186 | None:intergenic | 35.0% | |
| CCAATGCATAGAACAAAATC+TGG | + | chr1.3:74666421-74666440 | None:intergenic | 35.0% | |
| CTAAGAAGTTCATCTCTAAC+AGG | + | chr1.3:74664121-74664140 | None:intergenic | 35.0% | |
| CTTCCTGTTGGTATTCATAT+AGG | - | chr1.3:74664295-74664314 | MS.gene71778:CDS | 35.0% | |
| CTTCTGAATTCTGACCTTAT+AGG | - | chr1.3:74664145-74664164 | MS.gene71778:intron | 35.0% | |
| GAAAGAGGAAAATGGTAAGT+GGG | - | chr1.3:74663613-74663632 | MS.gene71778:CDS | 35.0% | |
| GAGTGAGTTCATTTGGTATA+AGG | + | chr1.3:74665410-74665429 | None:intergenic | 35.0% | |
| GATGACATGGATATCTTCAA+AGG | - | chr1.3:74664412-74664431 | MS.gene71778:CDS | 35.0% | |
| GTTTCTGTAAGCAACATCTA+TGG | - | chr1.3:74663834-74663853 | MS.gene71778:intron | 35.0% | |
| TAAGGAACTTCTTGATCATC+TGG | - | chr1.3:74665718-74665737 | MS.gene71778:CDS | 35.0% | |
| TACATAGGTCTTGAGTACTA+TGG | - | chr1.3:74664250-74664269 | MS.gene71778:CDS | 35.0% | |
| TTACAACATGCTGAAATGAG+GGG | - | chr1.3:74664472-74664491 | MS.gene71778:CDS | 35.0% | |
| TTCATACTTTCGACTATGCT+AGG | - | chr1.3:74664170-74664189 | MS.gene71778:intron | 35.0% | |
| TTCTTTGATGGAGATTGCTT+AGG | - | chr1.3:74665476-74665495 | MS.gene71778:CDS | 35.0% | |
| ! | AGGATTTCGAGTAATAGCTT+TGG | - | chr1.3:74665080-74665099 | MS.gene71778:CDS | 35.0% |
| ! | CACTTGACATTTTTGTTGCA+GGG | - | chr1.3:74666334-74666353 | MS.gene71778:CDS | 35.0% |
| ! | CAGCTTAAAACTTTTGGCAA+TGG | - | chr1.3:74664438-74664457 | MS.gene71778:CDS | 35.0% |
| ! | CCAGATTTTGTTCTATGCAT+TGG | - | chr1.3:74666418-74666437 | MS.gene71778:CDS | 35.0% |
| ! | CGAAAGTATGAAACCCTATA+AGG | + | chr1.3:74664162-74664181 | None:intergenic | 35.0% |
| ! | CTTCTTTTACAGCTGAAAGA+TGG | - | chr1.3:74663659-74663678 | MS.gene71778:CDS | 35.0% |
| ! | GGTTTAACTTCCACAATGTA+TGG | + | chr1.3:74665785-74665804 | None:intergenic | 35.0% |
| ! | GTTGTATCGATCAAGATTAC+AGG | + | chr1.3:74664625-74664644 | None:intergenic | 35.0% |
| ! | TGTTTTCATTGTGAGTGGAA+AGG | - | chr1.3:74665281-74665300 | MS.gene71778:CDS | 35.0% |
| !! | TTTGCTTGGTTTTTGACCAA+CGG | + | chr1.3:74666530-74666549 | None:intergenic | 35.0% |
| !!! | TGTGTCGTTTATCCTTTTCA+CGG | + | chr1.3:74664581-74664600 | None:intergenic | 35.0% |
| AAAGGTCAAACTGTGATGCT+TGG | - | chr1.3:74664385-74664404 | MS.gene71778:CDS | 40.0% | |
| AAGATTACAGGTGTGTATCC+AGG | + | chr1.3:74664613-74664632 | None:intergenic | 40.0% | |
| AAGCTTCCCATTCTTCAGTA+TGG | + | chr1.3:74665544-74665563 | None:intergenic | 40.0% | |
| AAGGTCAAACTGTGATGCTT+GGG | - | chr1.3:74664386-74664405 | MS.gene71778:CDS | 40.0% | |
| ACCCAAACAAAATCCTCATC+AGG | + | chr1.3:74663983-74664002 | None:intergenic | 40.0% | |
| AGAGAAACACTCTCACTGAA+TGG | - | chr1.3:74665304-74665323 | MS.gene71778:CDS | 40.0% | |
| AGATCAGATGAGGACATGTT+TGG | - | chr1.3:74666448-74666467 | MS.gene71778:CDS | 40.0% | |
| ATCAGAACCAACACTGTTGT+TGG | + | chr1.3:74663525-74663544 | None:intergenic | 40.0% | |
| ATCAGATGAGGACATGTTTG+GGG | - | chr1.3:74666450-74666469 | MS.gene71778:CDS | 40.0% | |
| ATGGTAAGTGGGAATTCACT+TGG | - | chr1.3:74663624-74663643 | MS.gene71778:CDS | 40.0% | |
| ATGTTGGAAGAACCATCAAG+TGG | + | chr1.3:74664015-74664034 | None:intergenic | 40.0% | |
| ATTGCTTATCAATCCAAGCG+AGG | - | chr1.3:74664226-74664245 | MS.gene71778:intron | 40.0% | |
| ATTTGATCGATCTCTTTGGC+AGG | - | chr1.3:74663904-74663923 | MS.gene71778:intron | 40.0% | |
| CAAGAGAGGATGATCATTGT+TGG | - | chr1.3:74663563-74663582 | MS.gene71778:CDS | 40.0% | |
| CATTGTGGAAGTTAAACCTC+AGG | - | chr1.3:74665787-74665806 | MS.gene71778:CDS | 40.0% | |
| CCCAAACAAAATCCTCATCA+GGG | + | chr1.3:74663982-74664001 | None:intergenic | 40.0% | |
| CCTGCAACAAAAATGTCAAG+TGG | + | chr1.3:74666336-74666355 | None:intergenic | 40.0% | |
| CTTGACATGAACCGAAATCT+CGG | + | chr1.3:74665697-74665716 | None:intergenic | 40.0% | |
| GAAAGAGATTTAACAGGGCA+AGG | - | chr1.3:74664041-74664060 | MS.gene71778:intron | 40.0% | |
| GAAGTTCATCTCTAACAGGA+AGG | + | chr1.3:74664117-74664136 | None:intergenic | 40.0% | |
| GAATTTGCAGACCGAGATTT+CGG | - | chr1.3:74665683-74665702 | MS.gene71778:CDS | 40.0% | |
| GACAAGCCATACTGAAGAAT+GGG | - | chr1.3:74665535-74665554 | MS.gene71778:CDS | 40.0% | |
| GAGCCTGTTTCAGTTAAAAG+TGG | - | chr1.3:74665758-74665777 | MS.gene71778:CDS | 40.0% | |
| GAGCTAAGAAACCAGTTCAA+AGG | - | chr1.3:74664367-74664386 | MS.gene71778:CDS | 40.0% | |
| GATCAGATGAGGACATGTTT+GGG | - | chr1.3:74666449-74666468 | MS.gene71778:CDS | 40.0% | |
| GATCATCCTCTCTTGAGAAA+TGG | + | chr1.3:74663558-74663577 | None:intergenic | 40.0% | |
| GATGAAACCAACAACAGTGT+TGG | - | chr1.3:74663515-74663534 | MS.gene71778:CDS | 40.0% | |
| GCAACAGCATCAATATTCCA+CGG | + | chr1.3:74664880-74664899 | None:intergenic | 40.0% | |
| GCAACATCATCTTGCTCAAT+TGG | + | chr1.3:74663740-74663759 | None:intergenic | 40.0% | |
| GCACAAAGGAAAGAGGAAAA+TGG | - | chr1.3:74663605-74663624 | MS.gene71778:CDS | 40.0% | |
| GGAAAGAGGAAAATGGTAAG+TGG | - | chr1.3:74663612-74663631 | MS.gene71778:CDS | 40.0% | |
| GGATAAACGACACATTTGGA+AGG | - | chr1.3:74664587-74664606 | MS.gene71778:intron | 40.0% | |
| TAAAAGTGGCCCATACATTG+TGG | - | chr1.3:74665772-74665791 | MS.gene71778:CDS | 40.0% | |
| TACGCACGATGTTGCATATT+GGG | - | chr1.3:74664978-74664997 | MS.gene71778:CDS | 40.0% | |
| TATATCTCGGACGAAGGAAA+AGG | + | chr1.3:74664088-74664107 | None:intergenic | 40.0% | |
| TCACAGTTTGACCTTTGAAC+TGG | + | chr1.3:74664381-74664400 | None:intergenic | 40.0% | |
| TCCTGTTGCAGTAGAATGTT+GGG | - | chr1.3:74664202-74664221 | MS.gene71778:intron | 40.0% | |
| TCTTTCCTTTGTGCCTTCAA+TGG | + | chr1.3:74663599-74663618 | None:intergenic | 40.0% | |
| TGATCTACGATTGACAACAC+TGG | - | chr1.3:74666174-74666193 | MS.gene71778:CDS | 40.0% | |
| TGGCCTATATGAATACCAAC+AGG | + | chr1.3:74664301-74664320 | None:intergenic | 40.0% | |
| TGGGGTAATAACAAGTGCAA+GGG | - | chr1.3:74666468-74666487 | MS.gene71778:CDS | 40.0% | |
| TGGTAAGTGGGAATTCACTT+GGG | - | chr1.3:74663625-74663644 | MS.gene71778:CDS | 40.0% | |
| TTACAGCTGAAAGATGGTCT+TGG | - | chr1.3:74663665-74663684 | MS.gene71778:CDS | 40.0% | |
| TTGGGGTAATAACAAGTGCA+AGG | - | chr1.3:74666467-74666486 | MS.gene71778:CDS | 40.0% | |
| TTGTTACAGCAGTGAGAGAT+GGG | - | chr1.3:74664695-74664714 | MS.gene71778:CDS | 40.0% | |
| TTTCGGTTCATGTCAAGCTA+AGG | - | chr1.3:74665700-74665719 | MS.gene71778:CDS | 40.0% | |
| ! | AAGACACAAGCGAGATTTTG+AGG | - | chr1.3:74666566-74666585 | MS.gene71778:CDS | 40.0% |
| ! | ACCCTGATGAGGATTTTGTT+TGG | - | chr1.3:74663978-74663997 | MS.gene71778:intron | 40.0% |
| ! | AGCAGTTTGTTCAGAAGCAT+TGG | + | chr1.3:74666608-74666627 | None:intergenic | 40.0% |
| ! | ATTGAAGGCACAAAGGAAAG+AGG | - | chr1.3:74663598-74663617 | MS.gene71778:CDS | 40.0% |
| ! | CCACTTGACATTTTTGTTGC+AGG | - | chr1.3:74666333-74666352 | MS.gene71778:CDS | 40.0% |
| ! | GGAAGCATGTAGTGAAACAA+AGG | + | chr1.3:74663860-74663879 | None:intergenic | 40.0% |
| ! | GGTATAAGGAGTATGACACA+AGG | + | chr1.3:74665396-74665415 | None:intergenic | 40.0% |
| ! | TATCCAAAAGAAGAGCATGC+TGG | - | chr1.3:74664798-74664817 | MS.gene71778:CDS | 40.0% |
| ! | TGGCTTGTCCTGGAAAAAAA+AGG | + | chr1.3:74665524-74665543 | None:intergenic | 40.0% |
| !! | CCCTGATGAGGATTTTGTTT+GGG | - | chr1.3:74663979-74663998 | MS.gene71778:intron | 40.0% |
| !! | CGCATATGTTTTTCAGACTC+CGG | + | chr1.3:74664931-74664950 | None:intergenic | 40.0% |
| !! | GAGATTTTGAGGATGTTGCA+AGG | - | chr1.3:74666577-74666596 | MS.gene71778:CDS | 40.0% |
| !! | GCATATGTTTTTCAGACTCC+GGG | + | chr1.3:74664930-74664949 | None:intergenic | 40.0% |
| !! | GTCGATTTGATCGATCTCTT+TGG | - | chr1.3:74663900-74663919 | MS.gene71778:intron | 40.0% |
| !! | TCTTTCTGAGACAGAAAGCA+AGG | - | chr1.3:74664339-74664358 | MS.gene71778:CDS | 40.0% |
| !! | TGCGTCATGAGAAGCATTAT+AGG | - | chr1.3:74664947-74664966 | MS.gene71778:CDS | 40.0% |
| !! | TTTCTGTGCCTGATTTTGAC+TGG | - | chr1.3:74665567-74665586 | MS.gene71778:CDS | 40.0% |
| !!! | TGGGGAATTGGTTTTGGTTT+AGG | - | chr1.3:74665060-74665079 | MS.gene71778:CDS | 40.0% |
| AATGAGGGGAAAGGTTGTTC+TGG | - | chr1.3:74664486-74664505 | MS.gene71778:CDS | 45.0% | |
| ACATGCTGAAATGAGGGGAA+AGG | - | chr1.3:74664477-74664496 | MS.gene71778:CDS | 45.0% | |
| ACGAAGGAAAAGGACTATGG+AGG | + | chr1.3:74664078-74664097 | None:intergenic | 45.0% | |
| ACTGCACAAGCTGTTCAAGA+TGG | + | chr1.3:74665247-74665266 | None:intergenic | 45.0% | |
| AGAACCATGTTACGCTAGCA+TGG | - | chr1.3:74665953-74665972 | MS.gene71778:CDS | 45.0% | |
| AGATTTAACAGGGCAAGGCT+TGG | - | chr1.3:74664046-74664065 | MS.gene71778:intron | 45.0% | |
| AGCTATGGATTCCGCCTTAA+TGG | - | chr1.3:74664903-74664922 | MS.gene71778:CDS | 45.0% | |
| AGGTCAAACTGTGATGCTTG+GGG | - | chr1.3:74664387-74664406 | MS.gene71778:CDS | 45.0% | |
| ATAGTAGCGCTACAACGTAG+TGG | - | chr1.3:74666025-74666044 | MS.gene71778:CDS | 45.0% | |
| ATGGAAACAGCTTCAGCACT+AGG | + | chr1.3:74665228-74665247 | None:intergenic | 45.0% | |
| CATCCTCTCTTGAGAAATGG+AGG | + | chr1.3:74663555-74663574 | None:intergenic | 45.0% | |
| CATCTCTAACAGGAAGGGTT+CGG | + | chr1.3:74664111-74664130 | None:intergenic | 45.0% | |
| CGATACAACACTCCAGAGTT+GGG | - | chr1.3:74664636-74664655 | MS.gene71778:intron | 45.0% | |
| CTCCTGTTGCAGTAGAATGT+TGG | - | chr1.3:74664201-74664220 | MS.gene71778:intron | 45.0% | |
| CTCTCTTGAGAAATGGAGGA+CGG | + | chr1.3:74663551-74663570 | None:intergenic | 45.0% | |
| CTTCTTGCAGGATCTGGAAA+GGG | - | chr1.3:74665008-74665027 | MS.gene71778:CDS | 45.0% | |
| CTTGTAGAGATCATCTGAGG+AGG | - | chr1.3:74665031-74665050 | MS.gene71778:CDS | 45.0% | |
| CTTGTTACAGCAGTGAGAGA+TGG | - | chr1.3:74664694-74664713 | MS.gene71778:CDS | 45.0% | |
| CTTTCGGTCGTGAGAAGAAA+AGG | - | chr1.3:74663447-74663466 | MS.gene71778:CDS | 45.0% | |
| GAAGAAAAGGCTTCCAAGAG+TGG | - | chr1.3:74663460-74663479 | MS.gene71778:CDS | 45.0% | |
| GGAAGTTATCAACCCTGATG+AGG | - | chr1.3:74663967-74663986 | MS.gene71778:intron | 45.0% | |
| GGACAAGCCATACTGAAGAA+TGG | - | chr1.3:74665534-74665553 | MS.gene71778:CDS | 45.0% | |
| GGTTCATGACTACCACTTGA+TGG | - | chr1.3:74664000-74664019 | MS.gene71778:intron | 45.0% | |
| GTACGCACGATGTTGCATAT+TGG | - | chr1.3:74664977-74664996 | MS.gene71778:CDS | 45.0% | |
| TAGTGAAAAGCTCAGGTGGA+AGG | + | chr1.3:74663802-74663821 | None:intergenic | 45.0% | |
| TCAAATCGACCACCAAGATC+AGG | + | chr1.3:74663890-74663909 | None:intergenic | 45.0% | |
| TCCCAACATTCTACTGCAAC+AGG | + | chr1.3:74664206-74664225 | None:intergenic | 45.0% | |
| TCGATACAACACTCCAGAGT+TGG | - | chr1.3:74664635-74664654 | MS.gene71778:intron | 45.0% | |
| TGATGCTGTTGCTGAAGCTA+TGG | - | chr1.3:74664888-74664907 | MS.gene71778:CDS | 45.0% | |
| TGCTAGCGTAACATGGTTCT+AGG | + | chr1.3:74665953-74665972 | None:intergenic | 45.0% | |
| TGGTAACCAGCTTCCATTGA+AGG | - | chr1.3:74663583-74663602 | MS.gene71778:CDS | 45.0% | |
| TTCTTCTCACGACCGAAAGA+CGG | + | chr1.3:74663446-74663465 | None:intergenic | 45.0% | |
| TTGTTGCAGGGTGTGAGTAA+GGG | - | chr1.3:74666346-74666365 | MS.gene71778:CDS | 45.0% | |
| TTTGTGCCTTCAATGGAAGC+TGG | + | chr1.3:74663592-74663611 | None:intergenic | 45.0% | |
| TTTGTTGCAGGGTGTGAGTA+AGG | - | chr1.3:74666345-74666364 | MS.gene71778:CDS | 45.0% | |
| ! | AGCTTCCATTGAAGGCACAA+AGG | - | chr1.3:74663591-74663610 | MS.gene71778:CDS | 45.0% |
| ! | AGGAAGGGTTCGGTATATCT+CGG | + | chr1.3:74664101-74664120 | None:intergenic | 45.0% |
| ! | CTGGTGGTGTCTGAATTCAT+TGG | - | chr1.3:74664817-74664836 | MS.gene71778:CDS | 45.0% |
| ! | GATTCATGACTGACTCAAGC+TGG | + | chr1.3:74664321-74664340 | None:intergenic | 45.0% |
| ! | GGTGTTGCACTAATTGATCC+AGG | + | chr1.3:74665207-74665226 | None:intergenic | 45.0% |
| ! | TGGTGATGACAGATCAGATG+AGG | - | chr1.3:74666438-74666457 | MS.gene71778:CDS | 45.0% |
| ! | TTCTTCAGTATGGCTTGTCC+TGG | + | chr1.3:74665534-74665553 | None:intergenic | 45.0% |
| !! | AGATGCTGGGGAATTGGTTT+TGG | - | chr1.3:74665054-74665073 | MS.gene71778:CDS | 45.0% |
| !! | CAACACTGGCTTGAAGTAGT+TGG | - | chr1.3:74666188-74666207 | MS.gene71778:CDS | 45.0% |
| !!! | GGGCCACTTTTAACTGAAAC+AGG | + | chr1.3:74665764-74665783 | None:intergenic | 45.0% |
| AACGACACATTTGGAAGGCC+TGG | - | chr1.3:74664592-74664611 | MS.gene71778:intron | 50.0% | |
| AAGACCTATGTAGCCTCGCT+TGG | + | chr1.3:74664242-74664261 | None:intergenic | 50.0% | |
| AAGCGATTCTCTCCCAACTC+TGG | + | chr1.3:74664651-74664670 | None:intergenic | 50.0% | |
| AATCGCGCCGCTTAATGATG+GGG | + | chr1.3:74664848-74664867 | None:intergenic | 50.0% | |
| AGCTCAGGTGGAAGGAAAGT+TGG | + | chr1.3:74663794-74663813 | None:intergenic | 50.0% | |
| ATCATCTGAGGAGGAGATGC+TGG | - | chr1.3:74665040-74665059 | MS.gene71778:CDS | 50.0% | |
| ATCATTAAGCGGCGCGATTC+GGG | - | chr1.3:74664849-74664868 | MS.gene71778:CDS | 50.0% | |
| CAAATCGCAAACCCTGCTAG+AGG | - | chr1.3:74664511-74664530 | MS.gene71778:intron | 50.0% | |
| CAAGGAAACACGTCCGCAAT+GGG | + | chr1.3:74666505-74666524 | None:intergenic | 50.0% | |
| CAATCCAAGCGAGGCTACAT+AGG | - | chr1.3:74664235-74664254 | MS.gene71778:intron | 50.0% | |
| CATCATTAAGCGGCGCGATT+CGG | - | chr1.3:74664848-74664867 | MS.gene71778:CDS | 50.0% | |
| CGGACGAAGGAAAAGGACTA+TGG | + | chr1.3:74664081-74664100 | None:intergenic | 50.0% | |
| CGTCCTCCATTTCTCAAGAG+AGG | - | chr1.3:74663549-74663568 | MS.gene71778:CDS | 50.0% | |
| CTTCTTGCACATCCTTTCCG+CGG | + | chr1.3:74664537-74664556 | None:intergenic | 50.0% | |
| GAATCGCGCCGCTTAATGAT+GGG | + | chr1.3:74664849-74664868 | None:intergenic | 50.0% | |
| GATAGTACTATGGTGCAGCC+TGG | - | chr1.3:74665186-74665205 | MS.gene71778:CDS | 50.0% | |
| GCTTCTTGCAGGATCTGGAA+AGG | - | chr1.3:74665007-74665026 | MS.gene71778:CDS | 50.0% | |
| GGGCTTGTAGAGATCATCTG+AGG | - | chr1.3:74665028-74665047 | MS.gene71778:CDS | 50.0% | |
| GTGGGAATTCACTTGGGATG+AGG | - | chr1.3:74663631-74663650 | MS.gene71778:CDS | 50.0% | |
| GTTCGGTATATCTCGGACGA+AGG | + | chr1.3:74664094-74664113 | None:intergenic | 50.0% | |
| TCAAACTGTGATGCTTGGGG+TGG | - | chr1.3:74664390-74664409 | MS.gene71778:CDS | 50.0% | |
| TCATCTGAGGAGGAGATGCT+GGG | - | chr1.3:74665041-74665060 | MS.gene71778:CDS | 50.0% | |
| TTCAGACTCCGGGACCATTA+AGG | + | chr1.3:74664920-74664939 | None:intergenic | 50.0% | |
| ! | CCAAAAGAAGAGCATGCTGG+TGG | - | chr1.3:74664801-74664820 | MS.gene71778:CDS | 50.0% |
| ! | CCAAACCAGAGCACTCTCTT+TGG | + | chr1.3:74665657-74665676 | None:intergenic | 50.0% |
| ! | CCACCAGCATGCTCTTCTTT+TGG | + | chr1.3:74664804-74664823 | None:intergenic | 50.0% |
| ! | GGTTTTTGACCAACGGTGCA+AGG | + | chr1.3:74666523-74666542 | None:intergenic | 50.0% |
| !! | AGAGTCCAAAGAGAGTGCTC+TGG | - | chr1.3:74665649-74665668 | MS.gene71778:CDS | 50.0% |
| !! | CAAAAGAATCGCTCGGTGCT+TGG | + | chr1.3:74665160-74665179 | None:intergenic | 50.0% |
| !! | CCAAAGAGAGTGCTCTGGTT+TGG | - | chr1.3:74665654-74665673 | MS.gene71778:CDS | 50.0% |
| !! | CTTGGACTTGCTGCAGAACA+CGG | - | chr1.3:74665345-74665364 | MS.gene71778:CDS | 50.0% |
| !!! | CAAGCACCGAGCGATTCTTT+TGG | - | chr1.3:74665158-74665177 | MS.gene71778:CDS | 50.0% |
| AGACTCCGGGACCATTAAGG+CGG | + | chr1.3:74664917-74664936 | None:intergenic | 55.0% | |
| AGGAGGAGATGCTGGGGAAT+TGG | - | chr1.3:74665048-74665067 | MS.gene71778:CDS | 55.0% | |
| CATCTGAGGAGGAGATGCTG+GGG | - | chr1.3:74665042-74665061 | MS.gene71778:CDS | 55.0% | |
| CCAAGAGTGGCAACTGTTGC+TGG | - | chr1.3:74663473-74663492 | MS.gene71778:CDS | 55.0% | |
| CCAGCAACAGTTGCCACTCT+TGG | + | chr1.3:74663476-74663495 | None:intergenic | 55.0% | |
| CGAATCGCGCCGCTTAATGA+TGG | + | chr1.3:74664850-74664869 | None:intergenic | 55.0% | |
| GACGTGTTTCCTTGCACCGT+TGG | - | chr1.3:74666511-74666530 | MS.gene71778:CDS | 55.0% | |
| GATGCTTGGGGTGGATGACA+TGG | - | chr1.3:74664399-74664418 | MS.gene71778:CDS | 55.0% | |
| GCAAGGAAACACGTCCGCAA+TGG | + | chr1.3:74666506-74666525 | None:intergenic | 55.0% | |
| GCGTAGCTTCTTGCAGGATC+TGG | - | chr1.3:74665002-74665021 | MS.gene71778:CDS | 55.0% | |
| GGATTCCGCCTTAATGGTCC+CGG | - | chr1.3:74664909-74664928 | MS.gene71778:CDS | 55.0% | |
| GGCATCTCTATCGCCCATTG+CGG | - | chr1.3:74666489-74666508 | MS.gene71778:CDS | 55.0% | |
| GGCTGCTCCCCATCATTAAG+CGG | - | chr1.3:74664838-74664857 | MS.gene71778:CDS | 55.0% | |
| TCGGCCATGCTAGCGTAACA+TGG | + | chr1.3:74665960-74665979 | None:intergenic | 55.0% | |
| CCACCAAGATCAGGCGACAG+CGG | + | chr1.3:74663881-74663900 | None:intergenic | 60.0% | |
| CTTCCGCTGTCGCCTGATCT+TGG | - | chr1.3:74663875-74663894 | MS.gene71778:intron | 60.0% | |
| TCATGCGGCTCGCCGTCTTT+CGG | - | chr1.3:74663431-74663450 | MS.gene71778:CDS | 60.0% | |
| TTGGGCGCGTAGCTTCTTGC+AGG | - | chr1.3:74664996-74665015 | MS.gene71778:CDS | 60.0% | |
| CCGCTGTCGCCTGATCTTGG+TGG | - | chr1.3:74663878-74663897 | MS.gene71778:intron | 65.0% | |
| CCTTTCCGCGGCCTCTAGCA+GGG | + | chr1.3:74664525-74664544 | None:intergenic | 65.0% | |
| GCAAACCCTGCTAGAGGCCG+CGG | - | chr1.3:74664517-74664536 | MS.gene71778:intron | 65.0% | |
| TCCTTTCCGCGGCCTCTAGC+AGG | + | chr1.3:74664526-74664545 | None:intergenic | 65.0% | |
| ! | GCGCGATTCGGGTGAATCCG+TGG | - | chr1.3:74664860-74664879 | MS.gene71778:CDS | 65.0% |
| CCCTGCTAGAGGCCGCGGAA+AGG | - | chr1.3:74664522-74664541 | MS.gene71778:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 74663392 | 74666660 | 74663392 | ID=MS.gene71778 |
| chr1.3 | mRNA | 74663392 | 74666660 | 74663392 | ID=MS.gene71778.t1;Parent=MS.gene71778 |
| chr1.3 | exon | 74664673 | 74666660 | 74664673 | ID=MS.gene71778.t1.exon1;Parent=MS.gene71778.t1 |
| chr1.3 | CDS | 74664673 | 74666660 | 74664673 | ID=cds.MS.gene71778.t1;Parent=MS.gene71778.t1 |
| chr1.3 | exon | 74664244 | 74664517 | 74664244 | ID=MS.gene71778.t1.exon2;Parent=MS.gene71778.t1 |
| chr1.3 | CDS | 74664244 | 74664517 | 74664244 | ID=cds.MS.gene71778.t1;Parent=MS.gene71778.t1 |
| chr1.3 | exon | 74663392 | 74663697 | 74663392 | ID=MS.gene71778.t1.exon3;Parent=MS.gene71778.t1 |
| chr1.3 | CDS | 74663392 | 74663697 | 74663392 | ID=cds.MS.gene71778.t1;Parent=MS.gene71778.t1 |
| Gene Sequence |
| Protein sequence |
