AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009143


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009143.t1 MTR_8g063790 99.416 856 5 0 1 856 1 856 0.0 1766
MS.gene009143.t1 MTR_1g109620 66.627 845 274 2 1 839 1 843 0.0 1191
MS.gene009143.t1 MTR_4g080160 63.466 854 297 3 1 841 1 852 0.0 1150
MS.gene009143.t1 MTR_8g105740 65.258 852 280 7 1 839 1 849 0.0 1149
MS.gene009143.t1 MTR_1g032730 63.934 854 292 6 1 840 1 852 0.0 1131
MS.gene009143.t1 MTR_4g129270 62.247 792 289 5 52 839 55 840 0.0 1036
MS.gene009143.t1 MTR_4g129270 63.338 701 251 4 52 748 55 753 0.0 930
MS.gene009143.t1 MTR_3g078210 60.053 751 299 1 77 827 3 752 0.0 926
MS.gene009143.t1 MTR_3g467030 54.348 598 243 3 56 653 2 569 0.0 625
MS.gene009143.t1 MTR_2g073260 34.207 763 426 21 52 787 122 835 1.43e-134 425
MS.gene009143.t1 MTR_0034s0170 34.165 802 434 23 52 814 83 829 5.42e-132 417
MS.gene009143.t1 MTR_8g087910 36.023 347 199 5 36 374 53 384 8.82e-68 231
MS.gene009143.t1 MTR_3g076810 51.955 179 72 4 8 186 6 170 7.82e-52 179
MS.gene009143.t1 MTR_8g087930 30.892 437 248 13 381 800 10 409 3.81e-50 185
MS.gene009143.t1 MTR_3g467040 56.075 107 47 0 477 583 110 216 7.12e-33 127
MS.gene009143.t1 MTR_3g467040 48.624 109 56 0 302 410 1 109 3.13e-27 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009143.t1 AT1G23870 74.510 867 209 3 1 855 1 867 0.0 1370
MS.gene009143.t1 AT1G70290 72.992 859 225 3 1 855 1 856 0.0 1338
MS.gene009143.t1 AT1G60140 72.242 861 233 1 1 855 1 861 0.0 1331
MS.gene009143.t1 AT1G60140 72.242 861 233 1 1 855 1 861 0.0 1331
MS.gene009143.t1 AT1G60140 72.242 861 233 1 1 855 1 861 0.0 1331
MS.gene009143.t1 AT1G60140 72.242 861 233 1 1 855 1 861 0.0 1331
MS.gene009143.t1 AT1G60140 72.242 861 233 1 1 855 1 861 0.0 1331
MS.gene009143.t1 AT1G70290 68.685 859 224 4 1 855 1 818 0.0 1241
MS.gene009143.t1 AT1G60140 73.580 757 194 1 1 751 1 757 0.0 1195
MS.gene009143.t1 AT4G17770 64.852 845 289 2 1 838 1 844 0.0 1177
MS.gene009143.t1 AT4G17770 64.852 845 289 2 1 838 1 844 0.0 1177
MS.gene009143.t1 AT1G68020 64.019 856 291 4 1 839 1 856 0.0 1156
MS.gene009143.t1 AT1G68020 64.019 856 291 4 1 839 1 856 0.0 1156
MS.gene009143.t1 AT1G06410 63.077 845 296 4 1 837 1 837 0.0 1126
MS.gene009143.t1 AT1G06410 63.077 845 296 4 1 837 1 837 0.0 1126
MS.gene009143.t1 AT1G06410 63.077 845 296 4 1 837 1 837 0.0 1126
MS.gene009143.t1 AT2G18700 60.327 857 326 6 1 851 1 849 0.0 1080
MS.gene009143.t1 AT1G68020 63.476 679 231 4 1 662 1 679 0.0 915
MS.gene009143.t1 AT1G16980 35.688 807 458 24 48 834 7 772 7.05e-146 451
MS.gene009143.t1 AT4G27550 33.052 829 469 22 51 838 2 785 2.38e-133 417
MS.gene009143.t1 AT4G27550 32.931 829 477 22 52 838 3 794 1.25e-132 416
MS.gene009143.t1 AT1G78580 33.805 778 432 20 52 800 91 814 2.70e-132 419
MS.gene009143.t1 AT1G78580 33.805 778 432 20 52 800 91 814 2.70e-132 419
MS.gene009143.t1 AT1G78580 33.805 778 432 20 52 800 91 814 2.70e-132 419
MS.gene009143.t1 AT1G78580 33.805 778 432 20 52 800 91 814 2.70e-132 419
MS.gene009143.t1 AT1G16980 35.266 638 362 18 48 675 7 603 1.43e-118 374

Find 205 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACTTCACCCTGCAAATT+TGG 0.106547 8.2:-38073777 None:intergenic
TGGGGAATTGGTCTGGGCTT+GGG 0.169334 8.2:+38074356 MS.gene009143:CDS
CTGGGGAATTGGTCTGGGCT+TGG 0.187166 8.2:+38074355 MS.gene009143:CDS
CAAGATGCAGACCCTGATTT+TGG 0.207528 8.2:+38074912 MS.gene009143:CDS
AAGAGGATCAATGAAATTTA+TGG 0.210673 8.2:+38073879 MS.gene009143:CDS
CCAAGGGTTATGACTGTTCC+TGG 0.261011 8.2:+38072787 MS.gene009143:CDS
GGGGAATTGGTCTGGGCTTG+GGG 0.266295 8.2:+38074357 MS.gene009143:CDS
ATAAATCCTGCAAGGGGTTC+AGG 0.270561 8.2:+38073813 MS.gene009143:CDS
TTGAGAATTTCATCCCTTAC+TGG 0.274615 8.2:-38073414 None:intergenic
CTCTAAGCTAAAAGAGATTC+AGG 0.278734 8.2:+38073650 MS.gene009143:CDS
CTTCTCTGAGTGGGGCCATC+AGG 0.282889 8.2:+38074144 MS.gene009143:CDS
AAAGATAAGAAAGTTATTCT+TGG 0.285155 8.2:+38073681 MS.gene009143:CDS
CTGGAATTGGGCAAGATGTT+TGG 0.285774 8.2:-38075412 None:intergenic
GAATCAGATGTTAGTTCTTC+TGG 0.292836 8.2:+38072832 MS.gene009143:CDS
GCAAAGATCATTATACTAAA+AGG 0.294692 8.2:+38074330 MS.gene009143:CDS
CAAGTGGTCCAGCAATTCTT+TGG 0.301605 8.2:-38074946 None:intergenic
ATAACCCTTGGAAGACTTCT+TGG 0.323153 8.2:-38072775 None:intergenic
TGAGAAGGTTCTCTTGAATA+TGG 0.324266 8.2:+38075158 MS.gene009143:CDS
TACTCATGATGTGGCATATT+GGG 0.324520 8.2:+38074274 MS.gene009143:CDS
TCCCATCATCTGAAATTTAC+CGG 0.324934 8.2:+38073385 MS.gene009143:CDS
CAGCAATTCTTTGGCTTGGC+AGG 0.325831 8.2:-38074937 None:intergenic
CAACTTCACCCTGCAAATTT+GGG 0.326749 8.2:-38073776 None:intergenic
CACGAAATCTGGTGGATTAC+CGG 0.327222 8.2:-38075187 None:intergenic
TCCTTCCCTGAACCCCTTGC+AGG 0.330095 8.2:-38073819 None:intergenic
AATATTGTGTTCATTGTTAG+TGG 0.330780 8.2:+38074572 MS.gene009143:CDS
TTTAGTATAATGATCTTTGC+AGG 0.332751 8.2:-38074327 None:intergenic
GCTTGGCAGGAGCCAAAATC+AGG 0.332771 8.2:-38074924 None:intergenic
ACTAAAAGGTGCTGGGGAAT+TGG 0.344491 8.2:+38074344 MS.gene009143:CDS
TCTCAAAAGAAACCTGGAAT+TGG 0.347950 8.2:-38075425 None:intergenic
AAGGTGCTGGGGAATTGGTC+TGG 0.348234 8.2:+38074349 MS.gene009143:CDS
TGGAATTGGGCAAGATGTTT+GGG 0.350397 8.2:-38075411 None:intergenic
CTTGTTGTGTCTGAGTTCAT+TGG 0.350593 8.2:+38074113 MS.gene009143:CDS
GAGATATTGATACTGCTAAA+TGG 0.353153 8.2:+38072908 MS.gene009143:CDS
CCAATGCACATCACGAAATC+TGG 0.354845 8.2:-38075198 None:intergenic
CGATTTCATCGAGTTAAACT+TGG 0.356832 8.2:+38073342 MS.gene009143:CDS
GGGTTCAGGGAAGGATGTTC+AGG 0.357166 8.2:+38073827 MS.gene009143:CDS
TTGTTGAATTCGGATTTAAT+TGG 0.359446 8.2:+38073441 MS.gene009143:CDS
ATTTGTTTGCGGATCTTGAT+TGG 0.360978 8.2:+38074796 MS.gene009143:CDS
TTAAGCACAGATATGACTTC+AGG 0.363121 8.2:-38074527 None:intergenic
GGGATTATTTCTGACCTTGA+TGG 0.367224 8.2:+38072808 MS.gene009143:CDS
CTGCCAAGCCAAAGAATTGC+TGG 0.368870 8.2:+38074938 MS.gene009143:CDS
TCTCAAAGGATTGTTGAATT+CGG 0.369451 8.2:+38073431 MS.gene009143:CDS
CATACAAAAGAACTAGTAGA+AGG 0.371718 8.2:+38074441 MS.gene009143:CDS
ATAAGCACTCTTCTCGAAAC+GGG 0.382221 8.2:-38073946 None:intergenic
TTTAGCTTAGAGGATGTAGA+AGG 0.386302 8.2:-38073639 None:intergenic
AGCATATGGGTAGCATATAA+TGG 0.386638 8.2:-38073161 None:intergenic
CAAACATCTTGCCCAATTCC+AGG 0.387739 8.2:+38075413 MS.gene009143:CDS
GGGCCATCAGGGTCAATCCC+TGG 0.389275 8.2:+38074156 MS.gene009143:CDS
ATAAATTTCATTGATCCTCT+TGG 0.390480 8.2:-38073877 None:intergenic
TAACCCTTGGAAGACTTCTT+GGG 0.392932 8.2:-38072774 None:intergenic
TATGAATTTAGCCCTCAGTA+TGG 0.393080 8.2:+38074202 MS.gene009143:CDS
ATTCTATTACAATTAAAAGA+TGG 0.393081 8.2:+38072955 MS.gene009143:CDS
GCAGCAGAACCCAAATTTGC+AGG 0.398626 8.2:+38073767 MS.gene009143:CDS
GATGTTGTAAAGTTGCTTGA+TGG 0.401203 8.2:+38075363 MS.gene009143:CDS
CTGCAAACAATATATTTGTA+TGG 0.405626 8.2:-38074026 None:intergenic
GAATCTAAGCGCGGACATAT+AGG 0.407020 8.2:+38073531 MS.gene009143:CDS
CTTCTCAGCTACCAAACCTT+TGG 0.411552 8.2:-38075142 None:intergenic
GCCATCTTTCTTGATTATGA+TGG 0.412733 8.2:+38074464 MS.gene009143:CDS
ATCATTATACTAAAAGGTGC+TGG 0.413565 8.2:+38074336 MS.gene009143:CDS
GTTGTTCACCTTCTCTGAGT+GGG 0.416077 8.2:+38074135 MS.gene009143:CDS
TTCTATTACAATTAAAAGAT+GGG 0.419809 8.2:+38072956 MS.gene009143:CDS
GTCCGGTAAATTTCAGATGA+TGG 0.420016 8.2:-38073387 None:intergenic
ATCACCATGATCTGAGCATA+TGG 0.421283 8.2:-38073175 None:intergenic
CTCAAAAGAAACCTGGAATT+GGG 0.424009 8.2:-38075424 None:intergenic
TGAAATTGCTCAGAGATTAC+TGG 0.424931 8.2:+38073047 MS.gene009143:CDS
GTACTCATGATGTGGCATAT+TGG 0.429323 8.2:+38074273 MS.gene009143:CDS
CAAGAGATTCTCTGAATGAA+TGG 0.436703 8.2:+38074600 MS.gene009143:CDS
CAATATATTTGTATGGGACT+AGG 0.441769 8.2:-38074019 None:intergenic
CTGCTAAATGGTGTTTCAGT+TGG 0.444648 8.2:+38072920 MS.gene009143:CDS
CAAATATATTGTTTGCAGAC+AGG 0.445837 8.2:+38074031 MS.gene009143:CDS
CTTTGACCGAGTGCTTTGGC+AGG 0.445978 8.2:+38073200 MS.gene009143:CDS
TTTACCGGACTTTGCCAGTA+AGG 0.446014 8.2:+38073400 MS.gene009143:CDS
CAGACAGGGAACTGCAAAGC+TGG 0.446931 8.2:+38074046 MS.gene009143:CDS
ATGTTAGTTCTTCTGGATGT+CGG 0.447873 8.2:+38072839 MS.gene009143:CDS
CTGCAGGTCATGGGGTAGAA+AGG 0.448467 8.2:-38073091 None:intergenic
GATGGAATAGCGACTCTGAA+TGG 0.448564 8.2:+38074763 MS.gene009143:intron
ATCGCTTTGACCGAGTGCTT+TGG 0.451315 8.2:+38073196 MS.gene009143:CDS
TGCGGATCTTGATTGGAAAC+AGG 0.453319 8.2:+38074803 MS.gene009143:CDS
CATATAGGACTTGATTACTT+TGG 0.456053 8.2:+38073546 MS.gene009143:CDS
ACAGGGAGTAACCAAAGGTT+TGG 0.457006 8.2:+38075131 MS.gene009143:intron
GTTTACATCATGCAAACTGC+TGG 0.460290 8.2:+38074622 MS.gene009143:CDS
CCAGATTTCGTGATGTGCAT+TGG 0.463267 8.2:+38075198 MS.gene009143:CDS
GGCAAACATGTTGCCGCTGC+AGG 0.463803 8.2:+38072879 MS.gene009143:CDS
TGAAGTCAAGGAAAGTGCTT+TGG 0.467204 8.2:+38074878 MS.gene009143:CDS
TAAATCCTGCAAGGGGTTCA+GGG 0.467451 8.2:+38073814 MS.gene009143:CDS
CACAGATATGACTTCAGGGC+TGG 0.467927 8.2:-38074522 None:intergenic
TGTTAGTTCTTCTGGATGTC+GGG 0.472937 8.2:+38072840 MS.gene009143:CDS
CAAAGGTTTGGTAGCTGAGA+AGG 0.472991 8.2:+38075143 MS.gene009143:CDS
AGGTGCTGGGGAATTGGTCT+GGG 0.473831 8.2:+38074350 MS.gene009143:CDS
CTGTGCTCTCAAAAGAAACC+TGG 0.476062 8.2:-38075431 None:intergenic
AGAGTTATTTCACTTTCTCA+TGG 0.477242 8.2:+38074383 MS.gene009143:CDS
CTGCAGTAGAATGCTAGGTC+TGG 0.477809 8.2:+38073503 MS.gene009143:CDS
GTTGCATCGTCAATGCTGTA+AGG 0.478965 8.2:+38073985 MS.gene009143:CDS
TTCTCTGAGTGGGGCCATCA+GGG 0.481545 8.2:+38074145 MS.gene009143:CDS
ATGAATTTAGCCCTCAGTAT+GGG 0.482655 8.2:+38074203 MS.gene009143:CDS
CAAGGGTTATGACTGTTCCT+GGG 0.488044 8.2:+38072788 MS.gene009143:CDS
CAAAGAATTGCTGGACCACT+TGG 0.490557 8.2:+38074947 MS.gene009143:CDS
TCTTGCTGCAGTAGAATGCT+AGG 0.494534 8.2:+38073498 MS.gene009143:CDS
TTGTGTTCATTGTTAGTGGA+AGG 0.496110 8.2:+38074576 MS.gene009143:CDS
AGCAACTGCATCTATATCCC+AGG 0.496254 8.2:-38074174 None:intergenic
TCCGGTAAATTTCAGATGAT+GGG 0.500703 8.2:-38073386 None:intergenic
TCAAATTATAAATCCTGCAA+GGG 0.500735 8.2:+38073806 MS.gene009143:CDS
TCTGTATACGACTGCATGAC+AGG 0.500792 8.2:-38074834 None:intergenic
GGTCCAGCAATTCTTTGGCT+TGG 0.501011 8.2:-38074941 None:intergenic
ACCCAAACAAAATCATCATC+GGG 0.501271 8.2:-38073276 None:intergenic
TGCTAAATGGTGTTTCAGTT+GGG 0.502656 8.2:+38072921 MS.gene009143:CDS
CATCCCTTACTGGCAAAGTC+CGG 0.504874 8.2:-38073404 None:intergenic
CTCTTGAATATGGTTAATGC+CGG 0.507275 8.2:+38075168 MS.gene009143:CDS
ATGGAATAGCGACTCTGAAT+GGG 0.507294 8.2:+38074764 MS.gene009143:CDS
AATAAGCACTCTTCTCGAAA+CGG 0.515130 8.2:-38073947 None:intergenic
CTACCCATATGCTCAGATCA+TGG 0.515637 8.2:+38073171 MS.gene009143:CDS
AACCCAAACAAAATCATCAT+CGG 0.516929 8.2:-38073277 None:intergenic
GAACCAGCAATTGTTAAAAG+AGG 0.517681 8.2:+38074987 MS.gene009143:CDS
ACAGATATGACTTCAGGGCT+GGG 0.520588 8.2:-38074521 None:intergenic
AAATATATTGTTTGCAGACA+GGG 0.522683 8.2:+38074032 MS.gene009143:CDS
ATGGTGTTTCAGTTGGGATG+AGG 0.523696 8.2:+38072927 MS.gene009143:CDS
TAAGCACAGATATGACTTCA+GGG 0.524391 8.2:-38074526 None:intergenic
GGCCATCAGGGTCAATCCCT+GGG 0.525071 8.2:+38074157 MS.gene009143:CDS
GTTCTTCTGGATGTCGGGAG+CGG 0.526826 8.2:+38072845 MS.gene009143:CDS
TCATTATACTAAAAGGTGCT+GGG 0.528112 8.2:+38074337 MS.gene009143:CDS
TGCTGATACAATATGGTCAA+TGG 0.528241 8.2:-38074420 None:intergenic
GGAAACAAGTCATTTGTTTG+CGG 0.528499 8.2:+38074785 MS.gene009143:CDS
TTCAAATTATAAATCCTGCA+AGG 0.529329 8.2:+38073805 MS.gene009143:CDS
ATCGTCAATGCTGTAAGGGA+TGG 0.532615 8.2:+38073990 MS.gene009143:CDS
TGGATCTAATATTGAAGTCA+AGG 0.535654 8.2:+38074866 MS.gene009143:CDS
TGAGATAGATGCTAGTGAGC+AGG 0.537498 8.2:+38073023 MS.gene009143:CDS
CCAGGAACAGTCATAACCCT+TGG 0.540553 8.2:-38072787 None:intergenic
GCTTAACTTCAACAATATGC+TGG 0.541548 8.2:-38075010 None:intergenic
CAATCTGAAATTTCTAGCTG+TGG 0.541729 8.2:+38073734 MS.gene009143:CDS
GCCATCATAATCAAGAAAGA+TGG 0.544414 8.2:-38074465 None:intergenic
TTGTTCACCTTCTCTGAGTG+GGG 0.546280 8.2:+38074136 MS.gene009143:CDS
TGTGTTCATTGTTAGTGGAA+GGG 0.547481 8.2:+38074577 MS.gene009143:CDS
TATTGTTGAAGTTAAGCCAC+AGG 0.548984 8.2:+38075016 MS.gene009143:CDS
CAGATATGACTTCAGGGCTG+GGG 0.549497 8.2:-38074520 None:intergenic
CTGGGACTTGCAGCTGAACA+TGG 0.550416 8.2:+38074641 MS.gene009143:CDS
AATCGTTTCCTCAAGAAAGT+AGG 0.550967 8.2:-38073324 None:intergenic
TAAGAAAGTTATTCTTGGTG+TGG 0.551636 8.2:+38073686 MS.gene009143:CDS
TGAATTTAGCCCTCAGTATG+GGG 0.553092 8.2:+38074204 MS.gene009143:CDS
TGCAAACAATATATTTGTAT+GGG 0.553617 8.2:-38074025 None:intergenic
GGAAGACTTCTTGGGGTGTG+AGG 0.553746 8.2:-38072766 None:intergenic
TGCAAAGCTGGATGAAGCTG+TGG 0.555064 8.2:+38074058 MS.gene009143:CDS
AGCATCTATCTCAACCTTGA+GGG 0.558399 8.2:-38073013 None:intergenic
TTACCGGACTTTGCCAGTAA+GGG 0.558832 8.2:+38073401 MS.gene009143:CDS
CATAAGCCTGCCAAAGCACT+CGG 0.561670 8.2:-38073206 None:intergenic
TGATACTGAGGTAATCTATG+TGG 0.564061 8.2:+38072987 MS.gene009143:CDS
TCACCATGATCTGAGCATAT+GGG 0.565672 8.2:-38073174 None:intergenic
GAGCGGTCAATGATAATGAC+TGG 0.567271 8.2:-38073918 None:intergenic
TCAAGGTCAGAAATAATCCC+AGG 0.567364 8.2:-38072805 None:intergenic
TCCTGCAAGGGGTTCAGGGA+AGG 0.568476 8.2:+38073818 MS.gene009143:CDS
GGTTGTTCACCTTCTCTGAG+TGG 0.569153 8.2:+38074134 MS.gene009143:CDS
GATTTCATCGAGTTAAACTT+GGG 0.570858 8.2:+38073343 MS.gene009143:CDS
CAGGATTTATAATTTGAACA+AGG 0.572858 8.2:-38073800 None:intergenic
AATATTTGCAGACAAAGTCA+TGG 0.573166 8.2:+38073242 MS.gene009143:CDS
GATACTGAGGTAATCTATGT+GGG 0.575365 8.2:+38072988 MS.gene009143:CDS
TATTCTTGGTGTGGACGACA+TGG 0.577773 8.2:+38073695 MS.gene009143:CDS
AGATATGACTTCAGGGCTGG+GGG 0.578681 8.2:-38074519 None:intergenic
AATCTATGTGGGTTCCCTCA+AGG 0.580394 8.2:+38072999 MS.gene009143:CDS
CATATCGATAGTGTTTCTCA+TGG 0.584215 8.2:-38074247 None:intergenic
TCTTTACAGGGAGTAACCAA+AGG 0.585367 8.2:+38075126 MS.gene009143:intron
TTTGATTTGTTGAGGTAGCG+AGG 0.586241 8.2:-38075386 None:intergenic
CGGTAGGAATTCACATGGGT+AGG 0.588120 8.2:+38073595 MS.gene009143:CDS
ATCCCAGGGATTGACCCTGA+TGG 0.588505 8.2:-38074159 None:intergenic
ATACAAAAGAACTAGTAGAA+GGG 0.590862 8.2:+38074442 MS.gene009143:CDS
AACCCTTGGAAGACTTCTTG+GGG 0.592251 8.2:-38072773 None:intergenic
TCGTATACAGAAGCAACTGA+TGG 0.593251 8.2:+38074846 MS.gene009143:CDS
ACACCCCAAGAAGTCTTCCA+AGG 0.595682 8.2:+38072770 MS.gene009143:CDS
CTACCCATGTGAATTCCTAC+CGG 0.597503 8.2:-38073594 None:intergenic
ATGATGGGAAAGGACTATGA+AGG 0.602097 8.2:-38073371 None:intergenic
AAGCTTATTTAATTGCCAAG+AGG 0.604527 8.2:+38073862 MS.gene009143:CDS
CGGGAGCTGATGGTAACGAC+GGG 0.607532 8.2:-38075275 None:intergenic
TAGCATCTATCTCAACCTTG+AGG 0.607564 8.2:-38073014 None:intergenic
TAAATTTCAGATGATGGGAA+AGG 0.607697 8.2:-38073381 None:intergenic
GTAAGGGATGAAATTCTCAA+AGG 0.608917 8.2:+38073417 MS.gene009143:CDS
CAAATTATAAATCCTGCAAG+GGG 0.610053 8.2:+38073807 MS.gene009143:CDS
TTTACATCATGCAAACTGCT+GGG 0.611466 8.2:+38074623 MS.gene009143:CDS
ATGCACATCACGAAATCTGG+TGG 0.613992 8.2:-38075195 None:intergenic
CTGATGGCCCCACTCAGAGA+AGG 0.614227 8.2:-38074143 None:intergenic
TGATGTGCATTGGAGATGAT+AGG 0.616649 8.2:+38075208 MS.gene009143:CDS
CATTATACTAAAAGGTGCTG+GGG 0.617606 8.2:+38074338 MS.gene009143:CDS
CAGCAGAACCCAAATTTGCA+GGG 0.618312 8.2:+38073768 MS.gene009143:CDS
TAACATCTGATTCACCATCA+AGG 0.622114 8.2:-38072822 None:intergenic
ATATGTTAGTACTCATGATG+TGG 0.622726 8.2:+38074265 MS.gene009143:CDS
CAGGTCATGGGGTAGAAAGG+TGG 0.624978 8.2:-38073088 None:intergenic
ACTGGATGACTTTAATTGCG+TGG 0.625192 8.2:+38073065 MS.gene009143:CDS
CTTGGCAGGAGCCAAAATCA+GGG 0.629827 8.2:-38074923 None:intergenic
TCGTCAATGCTGTAAGGGAT+GGG 0.634025 8.2:+38073991 MS.gene009143:CDS
GAATTTAGCCCTCAGTATGG+GGG 0.635859 8.2:+38074205 MS.gene009143:CDS
GGTAGGTAGGAAGCCTAGCA+AGG 0.637239 8.2:+38075314 MS.gene009143:CDS
GGTAGCATATAATGGAAGAG+AGG 0.639482 8.2:-38073153 None:intergenic
AAGTAGGCAAAATCATCAAG+TGG 0.641749 8.2:-38073308 None:intergenic
CACCCCAAGAAGTCTTCCAA+GGG 0.641869 8.2:+38072771 MS.gene009143:CDS
GCAACTGCATCTATATCCCA+GGG 0.642398 8.2:-38074173 None:intergenic
TCAAGGAAAGTGCTTTGGTG+TGG 0.650646 8.2:+38074883 MS.gene009143:CDS
TAGCAAGAACACTTTCCAAG+TGG 0.651389 8.2:-38074962 None:intergenic
TCGGGAGCTGATGGTAACGA+CGG 0.659800 8.2:-38075276 None:intergenic
TTTGCCGGTAGGAATTCACA+TGG 0.662631 8.2:+38073590 MS.gene009143:CDS
TTGCATCGTCAATGCTGTAA+GGG 0.663687 8.2:+38073986 MS.gene009143:CDS
TAAGCACTCTTCTCGAAACG+GGG 0.682811 8.2:-38073945 None:intergenic
GCAAAGCTGGATGAAGCTGT+GGG 0.684464 8.2:+38074059 MS.gene009143:CDS
ACAACAAGCATGCTTGTACG+AGG 0.685754 8.2:-38074098 None:intergenic
TCGGGAGCGGAAAATCATTG+TGG 0.689766 8.2:+38072858 MS.gene009143:CDS
TCTCGAAACGGGGAACAGAG+CGG 0.692951 8.2:-38073935 None:intergenic
GGATCTTGATTGGAAACAGG+TGG 0.695331 8.2:+38074806 MS.gene009143:CDS
CTGGACTATGAATCTAAGCG+CGG 0.708845 8.2:+38073522 MS.gene009143:CDS
TTGCCGGTAGGAATTCACAT+GGG 0.730503 8.2:+38073591 MS.gene009143:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTCTATTTTCTTT+TGG - chr8.2:38074716-38074735 None:intergenic 10.0%
!! ATTCTATTACAATTAAAAGA+TGG + chr8.2:38072955-38072974 MS.gene009143:CDS 15.0%
!! TTCTATTACAATTAAAAGAT+GGG + chr8.2:38072956-38072975 MS.gene009143:CDS 15.0%
!!! AAATTTTGATAAATATAGTG+CGG - chr8.2:38073572-38073591 None:intergenic 15.0%
!!! GTTTTATTAATATAAGATTG+TGG - chr8.2:38074500-38074519 None:intergenic 15.0%
!!! TATATTTATCAAAATTTTGC+CGG + chr8.2:38073575-38073594 MS.gene009143:CDS 15.0%
!! AAAGATAAGAAAGTTATTCT+TGG + chr8.2:38073681-38073700 MS.gene009143:CDS 20.0%
!! TGCAAACAATATATTTGTAT+GGG - chr8.2:38074028-38074047 None:intergenic 20.0%
!!! AACAATGAACACAATATTTT+TGG - chr8.2:38074570-38074589 None:intergenic 20.0%
!!! AATTGTTTTAATTGATGTCA+TGG + chr8.2:38075097-38075116 MS.gene009143:intron 20.0%
!!! TGTATTTTTTTATTTGCAGA+TGG + chr8.2:38074745-38074764 MS.gene009143:intron 20.0%
!!! TTTTTCTATTTTCTTTTGGT+GGG - chr8.2:38074712-38074731 None:intergenic 20.0%
!!! TTTTTTCTATTTTCTTTTGG+TGG - chr8.2:38074713-38074732 None:intergenic 20.0%
! AAATATATTGTTTGCAGACA+GGG + chr8.2:38074032-38074051 MS.gene009143:CDS 25.0%
! AAGAGGATCAATGAAATTTA+TGG + chr8.2:38073879-38073898 MS.gene009143:CDS 25.0%
! AATATTGTGTTCATTGTTAG+TGG + chr8.2:38074572-38074591 MS.gene009143:CDS 25.0%
! ATAAATTTCATTGATCCTCT+TGG - chr8.2:38073880-38073899 None:intergenic 25.0%
! ATACAAAAGAACTAGTAGAA+GGG + chr8.2:38074442-38074461 MS.gene009143:CDS 25.0%
! CAGGATTTATAATTTGAACA+AGG - chr8.2:38073803-38073822 None:intergenic 25.0%
! CTGCAAACAATATATTTGTA+TGG - chr8.2:38074029-38074048 None:intergenic 25.0%
! GCAAAGATCATTATACTAAA+AGG + chr8.2:38074330-38074349 MS.gene009143:CDS 25.0%
! TCAAATTATAAATCCTGCAA+GGG + chr8.2:38073806-38073825 MS.gene009143:CDS 25.0%
! TTCAAATTATAAATCCTGCA+AGG + chr8.2:38073805-38073824 MS.gene009143:CDS 25.0%
! TTGTTGAATTCGGATTTAAT+TGG + chr8.2:38073441-38073460 MS.gene009143:CDS 25.0%
! TTTAGTATAATGATCTTTGC+AGG - chr8.2:38074330-38074349 None:intergenic 25.0%
!! TTTTCTATTTTCTTTTGGTG+GGG - chr8.2:38074711-38074730 None:intergenic 25.0%
!! TTTTGTATGCTGATACAATA+TGG - chr8.2:38074430-38074449 None:intergenic 25.0%
AACCCAAACAAAATCATCAT+CGG - chr8.2:38073280-38073299 None:intergenic 30.0%
AAGCTTATTTAATTGCCAAG+AGG + chr8.2:38073862-38073881 MS.gene009143:CDS 30.0%
AATATTTGCAGACAAAGTCA+TGG + chr8.2:38073242-38073261 MS.gene009143:CDS 30.0%
AATTTGAAAAACTCTACCTG+TGG - chr8.2:38075035-38075054 None:intergenic 30.0%
ATATGTTAGTACTCATGATG+TGG + chr8.2:38074265-38074284 MS.gene009143:CDS 30.0%
CAAATATATTGTTTGCAGAC+AGG + chr8.2:38074031-38074050 MS.gene009143:CDS 30.0%
CAAATTATAAATCCTGCAAG+GGG + chr8.2:38073807-38073826 MS.gene009143:CDS 30.0%
CAATATATTTGTATGGGACT+AGG - chr8.2:38074022-38074041 None:intergenic 30.0%
CATACAAAAGAACTAGTAGA+AGG + chr8.2:38074441-38074460 MS.gene009143:CDS 30.0%
CATATAGGACTTGATTACTT+TGG + chr8.2:38073546-38073565 MS.gene009143:CDS 30.0%
GAGATATTGATACTGCTAAA+TGG + chr8.2:38072908-38072927 MS.gene009143:CDS 30.0%
GATTTCATCGAGTTAAACTT+GGG + chr8.2:38073343-38073362 MS.gene009143:CDS 30.0%
TAAGAAAGTTATTCTTGGTG+TGG + chr8.2:38073686-38073705 MS.gene009143:CDS 30.0%
TCTCAAAGGATTGTTGAATT+CGG + chr8.2:38073431-38073450 MS.gene009143:CDS 30.0%
TGGATCTAATATTGAAGTCA+AGG + chr8.2:38074866-38074885 MS.gene009143:CDS 30.0%
! AGAAAATATTTTGCCTTGCT+AGG - chr8.2:38075330-38075349 None:intergenic 30.0%
! AGAGTTATTTCACTTTCTCA+TGG + chr8.2:38074383-38074402 MS.gene009143:CDS 30.0%
! ATCATTATACTAAAAGGTGC+TGG + chr8.2:38074336-38074355 MS.gene009143:CDS 30.0%
! TCATGGATTTTCTCTTTACA+GGG + chr8.2:38075114-38075133 MS.gene009143:intron 30.0%
! TTTATCAAAATTTTGCCGGT+AGG + chr8.2:38073579-38073598 MS.gene009143:CDS 30.0%
! TTTCACTTTCTCATGGTTTT+AGG + chr8.2:38074390-38074409 MS.gene009143:CDS 30.0%
!! GACGACATGGATATTTTTAA+GGG + chr8.2:38073708-38073727 MS.gene009143:CDS 30.0%
!! TAAATTTCAGATGATGGGAA+AGG - chr8.2:38073384-38073403 None:intergenic 30.0%
!! TCATTATACTAAAAGGTGCT+GGG + chr8.2:38074337-38074356 MS.gene009143:CDS 30.0%
!!! CTGAACATGGTTACTTTTTA+AGG + chr8.2:38074654-38074673 MS.gene009143:CDS 30.0%
AAGTAGGCAAAATCATCAAG+TGG - chr8.2:38073311-38073330 None:intergenic 35.0%
AATAAGCACTCTTCTCGAAA+CGG - chr8.2:38073950-38073969 None:intergenic 35.0%
AATCGTTTCCTCAAGAAAGT+AGG - chr8.2:38073327-38073346 None:intergenic 35.0%
ACCCAAACAAAATCATCATC+GGG - chr8.2:38073279-38073298 None:intergenic 35.0%
AGCATATGGGTAGCATATAA+TGG - chr8.2:38073164-38073183 None:intergenic 35.0%
ATGAATTTAGCCCTCAGTAT+GGG + chr8.2:38074203-38074222 MS.gene009143:CDS 35.0%
ATTTGTTTGCGGATCTTGAT+TGG + chr8.2:38074796-38074815 MS.gene009143:CDS 35.0%
CAAGAGATTCTCTGAATGAA+TGG + chr8.2:38074600-38074619 MS.gene009143:CDS 35.0%
CATATCGATAGTGTTTCTCA+TGG - chr8.2:38074250-38074269 None:intergenic 35.0%
CGATTTCATCGAGTTAAACT+TGG + chr8.2:38073342-38073361 MS.gene009143:CDS 35.0%
CTCAAAAGAAACCTGGAATT+GGG - chr8.2:38075427-38075446 None:intergenic 35.0%
CTCTAAGCTAAAAGAGATTC+AGG + chr8.2:38073650-38073669 MS.gene009143:CDS 35.0%
CTCTTGAATATGGTTAATGC+CGG + chr8.2:38075168-38075187 MS.gene009143:CDS 35.0%
CTGCAGAAAAAGTTCTATCT+TGG + chr8.2:38073108-38073127 MS.gene009143:CDS 35.0%
GAACCAGCAATTGTTAAAAG+AGG + chr8.2:38074987-38075006 MS.gene009143:CDS 35.0%
GATACTGAGGTAATCTATGT+GGG + chr8.2:38072988-38073007 MS.gene009143:CDS 35.0%
GATGTTGTAAAGTTGCTTGA+TGG + chr8.2:38075363-38075382 MS.gene009143:CDS 35.0%
GCCATCATAATCAAGAAAGA+TGG - chr8.2:38074468-38074487 None:intergenic 35.0%
GCCATCTTTCTTGATTATGA+TGG + chr8.2:38074464-38074483 MS.gene009143:CDS 35.0%
GCTTAACTTCAACAATATGC+TGG - chr8.2:38075013-38075032 None:intergenic 35.0%
GGAAACAAGTCATTTGTTTG+CGG + chr8.2:38074785-38074804 MS.gene009143:CDS 35.0%
GTAAGGGATGAAATTCTCAA+AGG + chr8.2:38073417-38073436 MS.gene009143:CDS 35.0%
TAACATCTGATTCACCATCA+AGG - chr8.2:38072825-38072844 None:intergenic 35.0%
TAAGCACAGATATGACTTCA+GGG - chr8.2:38074529-38074548 None:intergenic 35.0%
TACTCATGATGTGGCATATT+GGG + chr8.2:38074274-38074293 MS.gene009143:CDS 35.0%
TATGAATTTAGCCCTCAGTA+TGG + chr8.2:38074202-38074221 MS.gene009143:CDS 35.0%
TATTGTTGAAGTTAAGCCAC+AGG + chr8.2:38075016-38075035 MS.gene009143:CDS 35.0%
TCCGGTAAATTTCAGATGAT+GGG - chr8.2:38073389-38073408 None:intergenic 35.0%
TCTCAAAAGAAACCTGGAAT+TGG - chr8.2:38075428-38075447 None:intergenic 35.0%
TGAAATTGCTCAGAGATTAC+TGG + chr8.2:38073047-38073066 MS.gene009143:CDS 35.0%
TGAGAAGGTTCTCTTGAATA+TGG + chr8.2:38075158-38075177 MS.gene009143:CDS 35.0%
TGATACTGAGGTAATCTATG+TGG + chr8.2:38072987-38073006 MS.gene009143:CDS 35.0%
TGCTAAATGGTGTTTCAGTT+GGG + chr8.2:38072921-38072940 MS.gene009143:CDS 35.0%
TGCTGATACAATATGGTCAA+TGG - chr8.2:38074423-38074442 None:intergenic 35.0%
TGTGTTCATTGTTAGTGGAA+GGG + chr8.2:38074577-38074596 MS.gene009143:CDS 35.0%
TTAAGCACAGATATGACTTC+AGG - chr8.2:38074530-38074549 None:intergenic 35.0%
TTGAGAATTTCATCCCTTAC+TGG - chr8.2:38073417-38073436 None:intergenic 35.0%
TTGTGTTCATTGTTAGTGGA+AGG + chr8.2:38074576-38074595 MS.gene009143:CDS 35.0%
TTTACATCATGCAAACTGCT+GGG + chr8.2:38074623-38074642 MS.gene009143:CDS 35.0%
! AATCTTTTAGACTTAGCTGG+TGG + chr8.2:38072727-38072746 MS.gene009143:CDS 35.0%
! ATCCCGATGATGATTTTGTT+TGG + chr8.2:38073274-38073293 MS.gene009143:CDS 35.0%
! ATGTTAGTTCTTCTGGATGT+CGG + chr8.2:38072839-38072858 MS.gene009143:CDS 35.0%
! CTTACTAGTTTCACTGTTAG+AGG - chr8.2:38075073-38075092 None:intergenic 35.0%
! GAATCAGATGTTAGTTCTTC+TGG + chr8.2:38072832-38072851 MS.gene009143:CDS 35.0%
! GCTAATCTTTTAGACTTAGC+TGG + chr8.2:38072724-38072743 MS.gene009143:CDS 35.0%
! GTCATGGATTTTCTCTTTAC+AGG + chr8.2:38075113-38075132 MS.gene009143:intron 35.0%
! TCCCATCATCTGAAATTTAC+CGG + chr8.2:38073385-38073404 MS.gene009143:CDS 35.0%
! TGATTTTGCCTACTTTCTTG+AGG + chr8.2:38073316-38073335 MS.gene009143:CDS 35.0%
! TTTAGCTTAGAGGATGTAGA+AGG - chr8.2:38073642-38073661 None:intergenic 35.0%
!! CAAGATAGAACTTTTTCTGC+AGG - chr8.2:38073110-38073129 None:intergenic 35.0%
!! CAATCTGAAATTTCTAGCTG+TGG + chr8.2:38073734-38073753 MS.gene009143:CDS 35.0%
!! CATTATACTAAAAGGTGCTG+GGG + chr8.2:38074338-38074357 MS.gene009143:CDS 35.0%
!! GGACGACATGGATATTTTTA+AGG + chr8.2:38073707-38073726 MS.gene009143:CDS 35.0%
!! TCCCGATGATGATTTTGTTT+GGG + chr8.2:38073275-38073294 MS.gene009143:CDS 35.0%
!!! CTGAATCTCTTTTAGCTTAG+AGG - chr8.2:38073652-38073671 None:intergenic 35.0%
!!! TTTGGGCTTTTGATTTGTTG+AGG - chr8.2:38075397-38075416 None:intergenic 35.0%
ACAACTTCACCCTGCAAATT+TGG - chr8.2:38073780-38073799 None:intergenic 40.0%
ACTGGATGACTTTAATTGCG+TGG + chr8.2:38073065-38073084 MS.gene009143:CDS 40.0%
AGCATCTATCTCAACCTTGA+GGG - chr8.2:38073016-38073035 None:intergenic 40.0%
ATAACCCTTGGAAGACTTCT+TGG - chr8.2:38072778-38072797 None:intergenic 40.0%
ATAAGCACTCTTCTCGAAAC+GGG - chr8.2:38073949-38073968 None:intergenic 40.0%
ATCACCATGATCTGAGCATA+TGG - chr8.2:38073178-38073197 None:intergenic 40.0%
ATGGAATAGCGACTCTGAAT+GGG + chr8.2:38074764-38074783 MS.gene009143:CDS 40.0%
CAACTTCACCCTGCAAATTT+GGG - chr8.2:38073779-38073798 None:intergenic 40.0%
CTGCTAAATGGTGTTTCAGT+TGG + chr8.2:38072920-38072939 MS.gene009143:CDS 40.0%
GTACTCATGATGTGGCATAT+TGG + chr8.2:38074273-38074292 MS.gene009143:CDS 40.0%
GTCCGGTAAATTTCAGATGA+TGG - chr8.2:38073390-38073409 None:intergenic 40.0%
GTTTACATCATGCAAACTGC+TGG + chr8.2:38074622-38074641 MS.gene009143:CDS 40.0%
TAACCCTTGGAAGACTTCTT+GGG - chr8.2:38072777-38072796 None:intergenic 40.0%
TACCGTGCAAGCAAAAATCT+CGG - chr8.2:38075298-38075317 None:intergenic 40.0%
TAGCAAGAACACTTTCCAAG+TGG - chr8.2:38074965-38074984 None:intergenic 40.0%
TAGCATCTATCTCAACCTTG+AGG - chr8.2:38073017-38073036 None:intergenic 40.0%
TCAAGGTCAGAAATAATCCC+AGG - chr8.2:38072808-38072827 None:intergenic 40.0%
TCACCATGATCTGAGCATAT+GGG - chr8.2:38073177-38073196 None:intergenic 40.0%
TCGTATACAGAAGCAACTGA+TGG + chr8.2:38074846-38074865 MS.gene009143:CDS 40.0%
TCTTTACAGGGAGTAACCAA+AGG + chr8.2:38075126-38075145 MS.gene009143:intron 40.0%
TGAATTTAGCCCTCAGTATG+GGG + chr8.2:38074204-38074223 MS.gene009143:CDS 40.0%
TGATGTGCATTGGAGATGAT+AGG + chr8.2:38075208-38075227 MS.gene009143:CDS 40.0%
TGGAATTGGGCAAGATGTTT+GGG - chr8.2:38075414-38075433 None:intergenic 40.0%
TTGCATCGTCAATGCTGTAA+GGG + chr8.2:38073986-38074005 MS.gene009143:CDS 40.0%
! ATATCTCTTTTAGCCTGCAG+CGG - chr8.2:38072895-38072914 None:intergenic 40.0%
! ATGATGGGAAAGGACTATGA+AGG - chr8.2:38073374-38073393 None:intergenic 40.0%
! CTTGTTGTGTCTGAGTTCAT+TGG + chr8.2:38074113-38074132 MS.gene009143:CDS 40.0%
! GGTAGCATATAATGGAAGAG+AGG - chr8.2:38073156-38073175 None:intergenic 40.0%
! TGGCCTCTTTTAACAATTGC+TGG - chr8.2:38074993-38075012 None:intergenic 40.0%
! TGGGTTTTCTTCTGATACTG+AGG + chr8.2:38072975-38072994 MS.gene009143:CDS 40.0%
! TGTTAGTTCTTCTGGATGTC+GGG + chr8.2:38072840-38072859 MS.gene009143:CDS 40.0%
!! AACTTTTTCTGCAGGTCATG+GGG - chr8.2:38073102-38073121 None:intergenic 40.0%
!! ACGCAGTTTTATGCAGGATT+TGG + chr8.2:38074298-38074317 MS.gene009143:CDS 40.0%
!! AGAACTTTTTCTGCAGGTCA+TGG - chr8.2:38073104-38073123 None:intergenic 40.0%
!! GAACTTTTTCTGCAGGTCAT+GGG - chr8.2:38073103-38073122 None:intergenic 40.0%
!! GGGATTATTTCTGACCTTGA+TGG + chr8.2:38072808-38072827 MS.gene009143:CDS 40.0%
!! TGAAGTCAAGGAAAGTGCTT+TGG + chr8.2:38074878-38074897 MS.gene009143:CDS 40.0%
!! TTTGATTTGTTGAGGTAGCG+AGG - chr8.2:38075389-38075408 None:intergenic 40.0%
AACCCTTGGAAGACTTCTTG+GGG - chr8.2:38072776-38072795 None:intergenic 45.0%
AATCTATGTGGGTTCCCTCA+AGG + chr8.2:38072999-38073018 MS.gene009143:CDS 45.0%
ACAACAAGCATGCTTGTACG+AGG - chr8.2:38074101-38074120 None:intergenic 45.0%
ACAGATATGACTTCAGGGCT+GGG - chr8.2:38074524-38074543 None:intergenic 45.0%
ACAGGGAGTAACCAAAGGTT+TGG + chr8.2:38075131-38075150 MS.gene009143:intron 45.0%
ACCGTGCAAGCAAAAATCTC+GGG - chr8.2:38075297-38075316 None:intergenic 45.0%
AGCAACTGCATCTATATCCC+AGG - chr8.2:38074177-38074196 None:intergenic 45.0%
ATAAATCCTGCAAGGGGTTC+AGG + chr8.2:38073813-38073832 MS.gene009143:CDS 45.0%
ATCGTCAATGCTGTAAGGGA+TGG + chr8.2:38073990-38074009 MS.gene009143:CDS 45.0%
ATGCACATCACGAAATCTGG+TGG - chr8.2:38075198-38075217 None:intergenic 45.0%
ATGGTGTTTCAGTTGGGATG+AGG + chr8.2:38072927-38072946 MS.gene009143:CDS 45.0%
CAAACATCTTGCCCAATTCC+AGG + chr8.2:38075413-38075432 MS.gene009143:CDS 45.0%
CAAAGAATTGCTGGACCACT+TGG + chr8.2:38074947-38074966 MS.gene009143:CDS 45.0%
CAAGGGTTATGACTGTTCCT+GGG + chr8.2:38072788-38072807 MS.gene009143:CDS 45.0%
CAAGTGGTCCAGCAATTCTT+TGG - chr8.2:38074949-38074968 None:intergenic 45.0%
CAGCAGAACCCAAATTTGCA+GGG + chr8.2:38073768-38073787 MS.gene009143:CDS 45.0%
CCAATGCACATCACGAAATC+TGG - chr8.2:38075201-38075220 None:intergenic 45.0%
CCAGATTTCGTGATGTGCAT+TGG + chr8.2:38075198-38075217 MS.gene009143:CDS 45.0%
CTACCCATATGCTCAGATCA+TGG + chr8.2:38073171-38073190 MS.gene009143:CDS 45.0%
CTACCCATGTGAATTCCTAC+CGG - chr8.2:38073597-38073616 None:intergenic 45.0%
CTGGAATTGGGCAAGATGTT+TGG - chr8.2:38075415-38075434 None:intergenic 45.0%
CTGGACTATGAATCTAAGCG+CGG + chr8.2:38073522-38073541 MS.gene009143:CDS 45.0%
CTGTGCTCTCAAAAGAAACC+TGG - chr8.2:38075434-38075453 None:intergenic 45.0%
CTTCTCAGCTACCAAACCTT+TGG - chr8.2:38075145-38075164 None:intergenic 45.0%
GAATCTAAGCGCGGACATAT+AGG + chr8.2:38073531-38073550 MS.gene009143:CDS 45.0%
GAATTTAGCCCTCAGTATGG+GGG + chr8.2:38074205-38074224 MS.gene009143:CDS 45.0%
GACTGAGGAGGAAGAAACAA+AGG - chr8.2:38074687-38074706 None:intergenic 45.0%
GATGGAATAGCGACTCTGAA+TGG + chr8.2:38074763-38074782 MS.gene009143:intron 45.0%
GCAACTGCATCTATATCCCA+GGG - chr8.2:38074176-38074195 None:intergenic 45.0%
GGATCTTGATTGGAAACAGG+TGG + chr8.2:38074806-38074825 MS.gene009143:CDS 45.0%
GTTGCATCGTCAATGCTGTA+AGG + chr8.2:38073985-38074004 MS.gene009143:CDS 45.0%
GTTGTTCACCTTCTCTGAGT+GGG + chr8.2:38074135-38074154 MS.gene009143:CDS 45.0%
TAAATCCTGCAAGGGGTTCA+GGG + chr8.2:38073814-38073833 MS.gene009143:CDS 45.0%
TAAGCACTCTTCTCGAAACG+GGG - chr8.2:38073948-38073967 None:intergenic 45.0%
TCGTCAATGCTGTAAGGGAT+GGG + chr8.2:38073991-38074010 MS.gene009143:CDS 45.0%
TCTGTATACGACTGCATGAC+AGG - chr8.2:38074837-38074856 None:intergenic 45.0%
TCTTGCTGCAGTAGAATGCT+AGG + chr8.2:38073498-38073517 MS.gene009143:CDS 45.0%
TGAGATAGATGCTAGTGAGC+AGG + chr8.2:38073023-38073042 MS.gene009143:CDS 45.0%
TGCGGATCTTGATTGGAAAC+AGG + chr8.2:38074803-38074822 MS.gene009143:CDS 45.0%
TTACCGGACTTTGCCAGTAA+GGG + chr8.2:38073401-38073420 MS.gene009143:CDS 45.0%
TTGCCGGTAGGAATTCACAT+GGG + chr8.2:38073591-38073610 MS.gene009143:CDS 45.0%
TTGTTCACCTTCTCTGAGTG+GGG + chr8.2:38074136-38074155 MS.gene009143:CDS 45.0%
TTTACCGGACTTTGCCAGTA+AGG + chr8.2:38073400-38073419 MS.gene009143:CDS 45.0%
TTTGCCGGTAGGAATTCACA+TGG + chr8.2:38073590-38073609 MS.gene009143:CDS 45.0%
! CAAAGGTTTGGTAGCTGAGA+AGG + chr8.2:38075143-38075162 MS.gene009143:CDS 45.0%
! CAAGATGCAGACCCTGATTT+TGG + chr8.2:38074912-38074931 MS.gene009143:CDS 45.0%
! GAGATTTTTGCTTGCACGGT+AGG + chr8.2:38075297-38075316 MS.gene009143:CDS 45.0%
! GAGCGGTCAATGATAATGAC+TGG - chr8.2:38073921-38073940 None:intergenic 45.0%
! GTTTTTGTAAGCAGCAGCTC+TGG + chr8.2:38073130-38073149 MS.gene009143:CDS 45.0%
! TATTCTTGGTGTGGACGACA+TGG + chr8.2:38073695-38073714 MS.gene009143:CDS 45.0%
! TCCCGAGATTTTTGCTTGCA+CGG + chr8.2:38075293-38075312 MS.gene009143:CDS 45.0%
! TTTTTGCTTGCACGGTAGGT+AGG + chr8.2:38075301-38075320 MS.gene009143:CDS 45.0%
!! ACTAAAAGGTGCTGGGGAAT+TGG + chr8.2:38074344-38074363 MS.gene009143:CDS 45.0%
!! CACGAAATCTGGTGGATTAC+CGG - chr8.2:38075190-38075209 None:intergenic 45.0%
!! TCAAGGAAAGTGCTTTGGTG+TGG + chr8.2:38074883-38074902 MS.gene009143:CDS 45.0%
ACACCCCAAGAAGTCTTCCA+AGG + chr8.2:38072770-38072789 MS.gene009143:CDS 50.0%
AGATATGACTTCAGGGCTGG+GGG - chr8.2:38074522-38074541 None:intergenic 50.0%
ATCGCTTTGACCGAGTGCTT+TGG + chr8.2:38073196-38073215 MS.gene009143:CDS 50.0%
CACAGATATGACTTCAGGGC+TGG - chr8.2:38074525-38074544 None:intergenic 50.0%
CACCCCAAGAAGTCTTCCAA+GGG + chr8.2:38072771-38072790 MS.gene009143:CDS 50.0%
CAGATATGACTTCAGGGCTG+GGG - chr8.2:38074523-38074542 None:intergenic 50.0%
CATCCCTTACTGGCAAAGTC+CGG - chr8.2:38073407-38073426 None:intergenic 50.0%
CCAAGGGTTATGACTGTTCC+TGG + chr8.2:38072787-38072806 MS.gene009143:CDS 50.0%
CCAGGAACAGTCATAACCCT+TGG - chr8.2:38072790-38072809 None:intergenic 50.0%
CGGTAGGAATTCACATGGGT+AGG + chr8.2:38073595-38073614 MS.gene009143:CDS 50.0%
CTCAGAAACCCCCATACTGA+GGG - chr8.2:38074216-38074235 None:intergenic 50.0%
CTGCAGTAGAATGCTAGGTC+TGG + chr8.2:38073503-38073522 MS.gene009143:CDS 50.0%
CTGCCAAGCCAAAGAATTGC+TGG + chr8.2:38074938-38074957 MS.gene009143:CDS 50.0%
CTTGGCAGGAGCCAAAATCA+GGG - chr8.2:38074926-38074945 None:intergenic 50.0%
GCAAAAATCTCGGGAGCTGA+TGG - chr8.2:38075288-38075307 None:intergenic 50.0%
GCAAAGCTGGATGAAGCTGT+GGG + chr8.2:38074059-38074078 MS.gene009143:CDS 50.0%
GCAGCAGAACCCAAATTTGC+AGG + chr8.2:38073767-38073786 MS.gene009143:CDS 50.0%
GGTCCAGCAATTCTTTGGCT+TGG - chr8.2:38074944-38074963 None:intergenic 50.0%
GGTTGTTCACCTTCTCTGAG+TGG + chr8.2:38074134-38074153 MS.gene009143:CDS 50.0%
TCGGGAGCGGAAAATCATTG+TGG + chr8.2:38072858-38072877 MS.gene009143:CDS 50.0%
TCTCAGAAACCCCCATACTG+AGG - chr8.2:38074217-38074236 None:intergenic 50.0%
TGCAAAGCTGGATGAAGCTG+TGG + chr8.2:38074058-38074077 MS.gene009143:CDS 50.0%
! CATAAGCCTGCCAAAGCACT+CGG - chr8.2:38073209-38073228 None:intergenic 50.0%
! TTCTTTTGGTGGGGTGACTG+AGG - chr8.2:38074702-38074721 None:intergenic 50.0%
!! CAGCAATTCTTTGGCTTGGC+AGG - chr8.2:38074940-38074959 None:intergenic 50.0%
!! TTGGGCACGCAGTTTTATGC+AGG + chr8.2:38074292-38074311 MS.gene009143:CDS 50.0%
ATCCCAGGGATTGACCCTGA+TGG - chr8.2:38074162-38074181 None:intergenic 55.0%
CAGACAGGGAACTGCAAAGC+TGG + chr8.2:38074046-38074065 MS.gene009143:CDS 55.0%
CAGGTCATGGGGTAGAAAGG+TGG - chr8.2:38073091-38073110 None:intergenic 55.0%
CTGCAGGTCATGGGGTAGAA+AGG - chr8.2:38073094-38073113 None:intergenic 55.0%
CTGGGACTTGCAGCTGAACA+TGG + chr8.2:38074641-38074660 MS.gene009143:CDS 55.0%
CTTTGACCGAGTGCTTTGGC+AGG + chr8.2:38073200-38073219 MS.gene009143:CDS 55.0%
GCTTGGCAGGAGCCAAAATC+AGG - chr8.2:38074927-38074946 None:intergenic 55.0%
GGAAGACTTCTTGGGGTGTG+AGG - chr8.2:38072769-38072788 None:intergenic 55.0%
GGGTTCAGGGAAGGATGTTC+AGG + chr8.2:38073827-38073846 MS.gene009143:CDS 55.0%
GGTAGGTAGGAAGCCTAGCA+AGG + chr8.2:38075314-38075333 MS.gene009143:CDS 55.0%
GTTCTTCTGGATGTCGGGAG+CGG + chr8.2:38072845-38072864 MS.gene009143:CDS 55.0%
TCTCGAAACGGGGAACAGAG+CGG - chr8.2:38073938-38073957 None:intergenic 55.0%
TTCTCTGAGTGGGGCCATCA+GGG + chr8.2:38074145-38074164 MS.gene009143:CDS 55.0%
! TCGGGAGCTGATGGTAACGA+CGG - chr8.2:38075279-38075298 None:intergenic 55.0%
! TGGGGAATTGGTCTGGGCTT+GGG + chr8.2:38074356-38074375 MS.gene009143:CDS 55.0%
! TTTTGGTGGGGTGACTGAGG+AGG - chr8.2:38074699-38074718 None:intergenic 55.0%
!! AAGGTGCTGGGGAATTGGTC+TGG + chr8.2:38074349-38074368 MS.gene009143:CDS 55.0%
!! AGGTGCTGGGGAATTGGTCT+GGG + chr8.2:38074350-38074369 MS.gene009143:CDS 55.0%
CTGATGGCCCCACTCAGAGA+AGG - chr8.2:38074146-38074165 None:intergenic 60.0%
CTTCTCTGAGTGGGGCCATC+AGG + chr8.2:38074144-38074163 MS.gene009143:CDS 60.0%
GGCAAACATGTTGCCGCTGC+AGG + chr8.2:38072879-38072898 MS.gene009143:CDS 60.0%
GGCCATCAGGGTCAATCCCT+GGG + chr8.2:38074157-38074176 MS.gene009143:CDS 60.0%
TCCTGCAAGGGGTTCAGGGA+AGG + chr8.2:38073818-38073837 MS.gene009143:CDS 60.0%
TCCTTCCCTGAACCCCTTGC+AGG - chr8.2:38073822-38073841 None:intergenic 60.0%
! CGGGAGCTGATGGTAACGAC+GGG - chr8.2:38075278-38075297 None:intergenic 60.0%
! CTGGGGAATTGGTCTGGGCT+TGG + chr8.2:38074355-38074374 MS.gene009143:CDS 60.0%
! GGGGAATTGGTCTGGGCTTG+GGG + chr8.2:38074357-38074376 MS.gene009143:CDS 60.0%
GGGCCATCAGGGTCAATCCC+TGG + chr8.2:38074156-38074175 MS.gene009143:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 38072706 38075461 38072706 ID=MS.gene009143
chr8.2 mRNA 38072706 38075461 38072706 ID=MS.gene009143.t1;Parent=MS.gene009143
chr8.2 exon 38072706 38074675 38072706 ID=MS.gene009143.t1.exon1;Parent=MS.gene009143.t1
chr8.2 CDS 38072706 38074675 38072706 ID=cds.MS.gene009143.t1;Parent=MS.gene009143.t1
chr8.2 exon 38074764 38075037 38074764 ID=MS.gene009143.t1.exon2;Parent=MS.gene009143.t1
chr8.2 CDS 38074764 38075037 38074764 ID=cds.MS.gene009143.t1;Parent=MS.gene009143.t1
chr8.2 exon 38075135 38075461 38075135 ID=MS.gene009143.t1.exon3;Parent=MS.gene009143.t1
chr8.2 CDS 38075135 38075461 38075135 ID=cds.MS.gene009143.t1;Parent=MS.gene009143.t1
Gene Sequence

>MS.gene009143

ATGACATCAAGATCGTATGCTAATCTTTTAGACTTAGCTGGTGGAGACTTGCTTGATATTCCTCACACCCCAAGAAGTCTTCCAAGGGTTATGACTGTTCCTGGGATTATTTCTGACCTTGATGGTGAATCAGATGTTAGTTCTTCTGGATGTCGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCGCTGCAGGCTAAAAGAGATATTGATACTGCTAAATGGTGTTTCAGTTGGGATGAGGATTCAATTCTATTACAATTAAAAGATGGGTTTTCTTCTGATACTGAGGTAATCTATGTGGGTTCCCTCAAGGTTGAGATAGATGCTAGTGAGCAGGATGAAATTGCTCAGAGATTACTGGATGACTTTAATTGCGTGGCCACCTTTCTACCCCATGACCTGCAGAAAAAGTTCTATCTTGGTTTTTGTAAGCAGCAGCTCTGGCCTCTCTTCCATTATATGCTACCCATATGCTCAGATCATGGTGATCGCTTTGACCGAGTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAAGTCATGGAAGTGATTGATCCCGATGATGATTTTGTTTGGGTTCATGACTACCACTTGATGATTTTGCCTACTTTCTTGAGGAAACGATTTCATCGAGTTAAACTTGGGTTTTTCCTTCATAGTCCTTTCCCATCATCTGAAATTTACCGGACTTTGCCAGTAAGGGATGAAATTCTCAAAGGATTGTTGAATTCGGATTTAATTGGTTTTCATACATTCGATTACGCACGTCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGCGGACATATAGGACTTGATTACTTTGGCCGCACTATATTTATCAAAATTTTGCCGGTAGGAATTCACATGGGTAGGCTTGACTCTGTATTAAATCTTCCTTCTACATCCTCTAAGCTAAAAGAGATTCAGGAAGAGTTTAAAGATAAGAAAGTTATTCTTGGTGTGGACGACATGGATATTTTTAAGGGTATCAATCTGAAATTTCTAGCTGTGGAACAGCTGCTGCAGCAGAACCCAAATTTGCAGGGTGAAGTTGTCCTTGTTCAAATTATAAATCCTGCAAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAAAGAAGCTTATTTAATTGCCAAGAGGATCAATGAAATTTATGGTTCAAAACATTATCAGCCAGTCATTATCATTGACCGCTCTGTTCCCCGTTTCGAGAAGAGTGCTTATTATGCTCTAGCTGAATGTTGCATCGTCAATGCTGTAAGGGATGGGATGAACCTAGTCCCATACAAATATATTGTTTGCAGACAGGGAACTGCAAAGCTGGATGAAGCTGTGGGTAGACAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTGAGTGGGGCCATCAGGGTCAATCCCTGGGATATAGATGCAGTTGCTGATGCTATGAATTTAGCCCTCAGTATGGGGGTTTCTGAGAAGAAGTTGCGCCATGAGAAACACTATCGATATGTTAGTACTCATGATGTGGCATATTGGGCACGCAGTTTTATGCAGGATTTGGAAAGAGCCTGCAAAGATCATTATACTAAAAGGTGCTGGGGAATTGGTCTGGGCTTGGGGTTCAGAGTTATTTCACTTTCTCATGGTTTTAGGAAGCTGTCCATTGACCATATTGTATCAGCATACAAAAGAACTAGTAGAAGGGCCATCTTTCTTGATTATGATGGCACTCTTGTACCACAATCTTATATTAATAAAACCCCCAGCCCTGAAGTCATATCTGTGCTTAATTCTCTTTGTAATGATACCAAAAATATTGTGTTCATTGTTAGTGGAAGGGCAAGAGATTCTCTGAATGAATGGTTTACATCATGCAAACTGCTGGGACTTGCAGCTGAACATGGTTACTTTTTAAGGTATGTCTCCTTTGTTTCTTCCTCCTCAGTCACCCCACCAAAAGAAAATAGAAAAAAATATAATACTAATGTATTTTTTTATTTGCAGATGGAATAGCGACTCTGAATGGGAAACAAGTCATTTGTTTGCGGATCTTGATTGGAAACAGGTGGTGCTGCCTGTCATGCAGTCGTATACAGAAGCAACTGATGGATCTAATATTGAAGTCAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGCTCCTGCCAAGCCAAAGAATTGCTGGACCACTTGGAAAGTGTTCTTGCTAATGAACCAGCAATTGTTAAAAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGTAGAGTTTTTCAAATTCGTTCACTGCATCTTCCTCTAACAGTGAAACTAGTAAGCTTGAATTGTTTTAATTGATGTCATGGATTTTCTCTTTACAGGGAGTAACCAAAGGTTTGGTAGCTGAGAAGGTTCTCTTGAATATGGTTAATGCCGGTAATCCACCAGATTTCGTGATGTGCATTGGAGATGATAGGTCTGATGAAGACATGTTTGAAAGCATTTTGAGTACAGTCTCGTGCCCGTCGTTACCATCAGCTCCCGAGATTTTTGCTTGCACGGTAGGTAGGAAGCCTAGCAAGGCAAAATATTTTCTTGATGACACTGCTGATGTTGTAAAGTTGCTTGATGGCCTCGCTACCTCAACAAATCAAAAGCCCAAACATCTTGCCCAATTCCAGGTTTCTTTTGAGAGCACAGTTTCTTAG

Protein sequence

>MS.gene009143.t1

MTSRSYANLLDLAGGDLLDIPHTPRSLPRVMTVPGIISDLDGESDVSSSGCRERKIIVANMLPLQAKRDIDTAKWCFSWDEDSILLQLKDGFSSDTEVIYVGSLKVEIDASEQDEIAQRLLDDFNCVATFLPHDLQKKFYLGFCKQQLWPLFHYMLPICSDHGDRFDRVLWQAYVSANKIFADKVMEVIDPDDDFVWVHDYHLMILPTFLRKRFHRVKLGFFLHSPFPSSEIYRTLPVRDEILKGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLDSVLNLPSTSSKLKEIQEEFKDKKVILGVDDMDIFKGINLKFLAVEQLLQQNPNLQGEVVLVQIINPARGSGKDVQEAKKEAYLIAKRINEIYGSKHYQPVIIIDRSVPRFEKSAYYALAECCIVNAVRDGMNLVPYKYIVCRQGTAKLDEAVGRQSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADAMNLALSMGVSEKKLRHEKHYRYVSTHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVISLSHGFRKLSIDHIVSAYKRTSRRAIFLDYDGTLVPQSYINKTPSPEVISVLNSLCNDTKNIVFIVSGRARDSLNEWFTSCKLLGLAAEHGYFLRWNSDSEWETSHLFADLDWKQVVLPVMQSYTEATDGSNIEVKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAIVKRGQHIVEVKPQGVTKGLVAEKVLLNMVNAGNPPDFVMCIGDDRSDEDMFESILSTVSCPSLPSAPEIFACTVGRKPSKAKYFLDDTADVVKLLDGLATSTNQKPKHLAQFQVSFESTVS