AlfalfaGEDB | MS.gene71803

M. sativa cultivar XinJiangDaYe / MS.gene71803

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71803.t1	RHN82399.1	92.3	584	45	0	1	584	50	633	0.00E+00	1076.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71803.t1	Q3ECH2	56.9	334	127	4	256	577	544	872	8.8e-102	372.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71803.t1	A0A396JVN6	92.3	584	45	0	1	584	50	633	0.0e+00	1076.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene71803	0.814364	1.60E-51	-1.69E-46
MS.gene049283	MS.gene71803	0.801951	7.07E-49	-1.69E-46
MS.gene049452	MS.gene71803	0.808848	2.53E-50	-1.69E-46
MS.gene049499	MS.gene71803	0.800847	1.19E-48	-1.69E-46
MS.gene049983	MS.gene71803	0.805925	1.06E-49	-1.69E-46
MS.gene050759	MS.gene71803	0.809084	2.25E-50	-1.69E-46
MS.gene052493	MS.gene71803	0.83421	3.42E-56	-1.69E-46
MS.gene052674	MS.gene71803	0.807216	5.63E-50	-1.69E-46
MS.gene052675	MS.gene71803	0.8078	4.23E-50	-1.69E-46
MS.gene052677	MS.gene71803	0.809116	2.22E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71803.t1	MTR_1g110270	92.555	591	25	3	1	584	50	628	0.0	1091
MS.gene71803.t1	MTR_1g110260	52.495	541	229	9	34	570	16	532	0.0	537
MS.gene71803.t1	MTR_1g110140	71.681	339	90	3	231	569	17	349	4.30e-178	507
MS.gene71803.t1	MTR_1g110220	49.050	579	207	12	1	566	45	548	5.02e-172	499
MS.gene71803.t1	MTR_1g110230	53.162	506	175	11	96	570	124	598	3.42e-168	491
MS.gene71803.t1	MTR_6g082950	58.424	368	141	5	209	569	59	421	1.90e-145	427
MS.gene71803.t1	MTR_6g083760	59.350	369	137	5	210	570	259	622	1.48e-144	432
MS.gene71803.t1	MTR_1g110160	44.143	589	234	15	2	570	60	573	5.08e-143	426
MS.gene71803.t1	MTR_6g082870	45.793	511	232	8	94	569	158	658	9.36e-143	428
MS.gene71803.t1	MTR_8g104520	53.286	426	165	9	172	565	217	640	8.28e-142	426

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71803.t1	AT4G18250	52.320	388	152	9	205	583	296	659	7.62e-127	388
MS.gene71803.t1	AT1G70250	54.768	367	141	6	205	562	402	752	9.83e-126	389
MS.gene71803.t1	AT1G66910	47.981	421	194	7	164	565	225	639	2.94e-124	381
MS.gene71803.t1	AT1G66910	47.786	429	196	7	164	570	225	647	7.95e-124	380
MS.gene71803.t1	AT5G38280	57.143	329	125	6	256	577	319	638	3.74e-123	378
MS.gene71803.t1	AT5G38280	57.143	329	125	6	256	577	319	638	8.27e-123	377
MS.gene71803.t1	AT1G67000	50.602	415	180	9	178	577	468	872	1.38e-122	383
MS.gene71803.t1	AT5G38260	50.369	407	175	10	164	557	215	607	1.91e-122	375
MS.gene71803.t1	AT1G66920	45.359	474	232	10	123	578	152	616	2.48e-120	369
MS.gene71803.t1	AT5G38250	47.059	459	199	12	129	562	160	599	4.57e-120	369

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Find 85 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTAATAAAGCTATTG+TGG	0.490569	1.1:-79153900	MS.gene71803:CDS
AAAGATAAATTGGGTCAAGG+AGG	0.673564	1.1:-79152593	MS.gene71803:CDS
AAAGATCAGCAGGATCAAGA+CGG	0.654516	1.1:+79153798	None:intergenic
AAAGTATTAAGCGAATCCGA+AGG	0.680004	1.1:-79152518	MS.gene71803:CDS
AAAGTGGTAGATATGATGGA+AGG	0.576363	1.1:-79151789	MS.gene71803:CDS
AAATCTGATGTATATAGTTA+TGG	0.440528	1.1:-79152041	MS.gene71803:CDS
AAATTGGGTCAAGGAGGATA+TGG	0.380052	1.1:-79152587	MS.gene71803:CDS
AAATTTCTAGAGAACACTTC+TGG	0.351934	1.1:+79152080	None:intergenic
AACAACTCAATTATTTGGTA+TGG	0.460114	1.1:+79152689	None:intergenic
AACTCAATTATTTGGTATGG+TGG	0.457241	1.1:+79152692	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAATTATTTGGTATGG+TGG	+	chr1.1:79153226-79153245	None:intergenic	30.0%
AATTGAAGATTGAGCTTCAA+TGG	+	chr1.1:79153586-79153605	None:intergenic	30.0%
ACTCAATTATTTGGTATGGT+GGG	+	chr1.1:79153225-79153244	None:intergenic	30.0%
ACTGTCTACAATATTGCAAT+TGG	-	chr1.1:79153616-79153635	MS.gene71803:intron	30.0%
ACTTCTCATGTTAACATTGT+TGG	-	chr1.1:79153463-79153482	MS.gene71803:intron	30.0%
AGTAGTATCTTCTCTACAAA+TGG	+	chr1.1:79151966-79151985	None:intergenic	30.0%
ATATATGACTACATGCCTAA+TGG	-	chr1.1:79153526-79153545	MS.gene71803:intron	30.0%
ATGCAACTGCATAATTTATC+AGG	+	chr1.1:79153129-79153148	None:intergenic	30.0%
CAACAATATCAATCTTGTGT+TGG	+	chr1.1:79152352-79152371	None:intergenic	30.0%
CAACACAAGATTGATATTGT+TGG	-	chr1.1:79152350-79152369	MS.gene71803:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	79151668	79154269	79151668	ID=MS.gene71803
chr1.1	mRNA	79151668	79154269	79151668	ID=MS.gene71803.t1;Parent=MS.gene71803
chr1.1	exon	79153675	79154269	79153675	ID=MS.gene71803.t1.exon1;Parent=MS.gene71803.t1
chr1.1	CDS	79153675	79154269	79153675	ID=cds.MS.gene71803.t1;Parent=MS.gene71803.t1
chr1.1	exon	79153264	79153299	79153264	ID=MS.gene71803.t1.exon2;Parent=MS.gene71803.t1
chr1.1	CDS	79153264	79153299	79153264	ID=cds.MS.gene71803.t1;Parent=MS.gene71803.t1
chr1.1	exon	79151668	79152794	79151668	ID=MS.gene71803.t1.exon3;Parent=MS.gene71803.t1
chr1.1	CDS	79151668	79152794	79151668	ID=cds.MS.gene71803.t1;Parent=MS.gene71803.t1

Gene Sequence

>MS.gene71803

ATGTTAGTAATACATGGTTGTGAAGACTACGAACCACAATCCAAAAAAACCATACAAAACAACAAAAGATGGTTCGATATTATCGAAATCAAACCATTCACAATCACAATCAAAGACGACCAACTCCACGATCTTTTGCTACAAAAAAGCTGTGATGTTCTTACCTATGATTCCATGTTCACGGTCAACACGCCTTTGGTTTCATCTCGTTTGGAATATTACGTAACTGTTTTCGGATGCAACAGCAACAACTCACTTGATCTTCAACAATACTATTCTGTTTCTAATTCTACTTCCATTTGTAGAGAAGATACTACTACTTTGTATGGTGTTTCGGATTCAGATATAAAGAGTAATAAAGCTATTGTGGTTGTAACTGATTCTGTTTCCAATTCTAATCATCTTAAAGGATGTTCAAATGTTGAGCTTCCAACGATTTCAAAGGTTGACCGTCTTGATCCTGCTGATCTTTTTAACGTGTTAAGCGGTGAAATTGCTATCAAATTACAAGTTTCGCAGAATTGTTCTAGCTGCCATGATCTTTATGGTGGTCAATGTCTACTTGATAACATTGGCCAGTTTTATTGTAAACAAGGTAAGGTACCATCTCAAATTTACTCCAAGTATTATAGTCTATTCTTGCCACAAATTCAATCCAGATTACAATAACCATTGATTAGTCCAACACAAGATTGATATTGTTGGGAATTTTTGTTTGGTTTCAATTCTGTTGTTGACTTTTATCAACAAAAAAAACCTGTTGTTGACTTGTATTTTTTATTTAAAAATAAATAAGTAGAAAATGAAAATTTTGAATTTATTAAGGCCTCCCATTCGACCAACTACAACTTTACAATGTTTACGCAATGTTCTTTGAGATTAAAAGTCTAACATGTTAATACTGAGTCTGAGTTGATATGTCTTCAGAAATTATGTTGTTATATTTCTGAATCTTTATTTTATTTGGCAGAGAAATCTAAAAAGACTCGTCTTAAAGTGGCAGCAGGTATGTAGTAAATTAAATCTAATTATAATGTTTTCAACTTTTTTCTTTGAGACTAAAAGTTGAAGTATAGTACAGTTTTTTTCAATAATTCCAAGTACAGAATTTGCAAGTTAACATTTTCCGGAATTTGTTAGTGTGTGTGTGTGTGTGTCTAAATATATTGAAATTTGATTTAATTAACTGGTAACCTGCAGGTCTGGTGACTCATTGATGGATGATTATGATCTGTTTTAGTTTTACCATAACATTGTCTCTTGCCTAATTGATGGTTCAACTAGTAGTTCAACATCTCAATGTCAATTCTACTGGTTAATCACCAATTGAATTTTATAACTTTTCTTCGTAGTATTGCATTGAATGTGAATAGGTGTGAAAGGTCCATTTTTCAGAAATGCTAAATATACTGTGGTATAACAATTAATAACACTTCTTCTGCACTGGATTATTAATTTCCTGATAAATTATGCAGTTGCATCTTCTGCTGGAGTAGTGGTAGTTCTGATTTTTTTGGCTTGGTTCTTGAGAAGACACTATTTCAACAATAAAAACCCACCATACCAAATAATTGAGTTGTTTCTGAAAAACCATGGTCACCTAGCAGCTAAAAGATACACTTATGCAGAGATAAAGAAAGCAACCAATTCATTCAAAGATAAATTGGGTCAAGGAGGATATGGCAGTGTATACAAAGGAAAATTACAAGATGGAAGTCTTGTGGCAGTAAAAGTATTAAGCGAATCCGAAGGTAATGGCGAGGAATTCATCAACGAAGTTGCTAGTATTAGTGTTACTTCTCATGTTAACATTGTTGGTTTGTTGGGATTCTATCTAGAAGGTTCTAAAAGAGCTTTGATATATGACTACATGCCTAATGGATCACTTGAGAAGTTCATATATGAAAACAAAGATCCATTGAAGCTCAATCTTCAATTGAGTTGCAAAACTGTCTACAATATTGCAATTGGCGTTGCTCGAGGATTAGAGTATCTACACAAAGGTTGCAATACTAAAATTTTACATTTTGATATAAAACCTCATAATATATTGCTAGACGACGATTTTTGTCCTAAGGTTTCGGATTTTGGACTTGCGAAAGTATGTCCAAGAAAAGAAAGTATCATATCCTTATTAGGTGCTAGAGGTACTGCAGGATACATTGCTCCAGAAGTGTTCTCTAGAAATTTTGGCGGCGTCTCTCACAAATCTGATGTATATAGTTATGGAATGATGGTTTTAGAAATGGTTGGGGGGAAACAGAATAACAATGTCGTTGAAGTTGAACGGTCGAGTGAAATTTATTTTCCACAATGGATTTATAAGCGTCTTGAACTAAACCAAGAACCAAGTTTGCGAAGCATTAAAAATGAATTTGATAAAAATATTGTACAGAAGATGATTATAGTAAGCTTATGGTGCATCCAGACAGATCCATCTCATAGGCCTGCAATGAGTAAAGTGGTAGATATGATGGAAGGTAGCTTGGAATCTTTGCAAATACCACCAAAACCTTGTCTCTTCACACCTCCTAGTTCTCCCTCAAGATCATCAGAGTATAACACTCACACATCTCAGGATTGGTATTCTTCAAGTAAGTAA

Protein sequence

>MS.gene71803.t1

MLVIHGCEDYEPQSKKTIQNNKRWFDIIEIKPFTITIKDDQLHDLLLQKSCDVLTYDSMFTVNTPLVSSRLEYYVTVFGCNSNNSLDLQQYYSVSNSTSICREDTTTLYGVSDSDIKSNKAIVVVTDSVSNSNHLKGCSNVELPTISKVDRLDPADLFNVLSGEIAIKLQVSQNCSSCHDLYGGQCLLDNIGQFYCKQEKSKKTRLKVAAVASSAGVVVVLIFLAWFLRRHYFNNKNPPYQIIELFLKNHGHLAAKRYTYAEIKKATNSFKDKLGQGGYGSVYKGKLQDGSLVAVKVLSESEGNGEEFINEVASISVTSHVNIVGLLGFYLEGSKRALIYDYMPNGSLEKFIYENKDPLKLNLQLSCKTVYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDDDFCPKVSDFGLAKVCPRKESIISLLGARGTAGYIAPEVFSRNFGGVSHKSDVYSYGMMVLEMVGGKQNNNVVEVERSSEIYFPQWIYKRLELNQEPSLRSIKNEFDKNIVQKMIIVSLWCIQTDPSHRPAMSKVVDMMEGSLESLQIPPKPCLFTPPSSPSRSSEYNTHTSQDWYSSSK