Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74275.t1 | XP_013442809.2 | 88.8 | 152 | 17 | 0 | 1 | 152 | 21 | 172 | 6.90E-66 | 260 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74275.t1 | A0A396I2U5 | 88.8 | 152 | 17 | 0 | 1 | 152 | 21 | 172 | 5.0e-66 | 260.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene74275 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene04998 | MS.gene74275 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene74275 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene053045 | MS.gene74275 | 0.819949 | 8.88E-53 | -1.69E-46 |
| MS.gene053298 | MS.gene74275 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene74275 | 0.803518 | 3.36E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene74275 | 0.810187 | 1.31E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene74275 | 0.822176 | 2.72E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene74275 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene74275 | 0.816086 | 6.63E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene74275 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene74275 | 0.833927 | 4.03E-56 | -1.69E-46 |
| MS.gene057890 | MS.gene74275 | -0.803144 | 4.01E-49 | -1.69E-46 |
| MS.gene057893 | MS.gene74275 | -0.819265 | 1.27E-52 | -1.69E-46 |
| MS.gene057919 | MS.gene74275 | 0.800074 | 1.71E-48 | -1.69E-46 |
| MS.gene058159 | MS.gene74275 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene74275 | 0.805963 | 1.04E-49 | -1.69E-46 |
| MS.gene058592 | MS.gene74275 | 0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene74275 | 0.832862 | 7.42E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene74275 | -0.835754 | 1.40E-56 | -1.69E-46 |
| MS.gene060259 | MS.gene74275 | 0.809368 | 1.96E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene74275 | 0.817079 | 3.97E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74275.t1 | MTR_0085s0020 | 95.146 | 103 | 5 | 0 | 50 | 152 | 7 | 109 | 1.54e-65 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74275.t1 | AT1G61415 | 47.183 | 142 | 72 | 1 | 1 | 142 | 4 | 142 | 1.62e-35 | 120 |
| MS.gene74275.t1 | AT1G61415 | 47.183 | 142 | 72 | 1 | 1 | 142 | 21 | 159 | 3.65e-35 | 120 |
| MS.gene74275.t1 | AT1G61450 | 43.373 | 83 | 47 | 0 | 1 | 83 | 21 | 103 | 4.16e-16 | 70.1 |
Find 19 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATATTATAGCTGGTTTC+AGG | 0.147934 | 4.4:-64214054 | MS.gene74275:intron |
| TGAAAATGAAATTCAACTTT+TGG | 0.242525 | 4.4:-64212954 | MS.gene74275:CDS |
| CAATTTCTCTTTGAAATTCT+AGG | 0.264996 | 4.4:+64213029 | None:intergenic |
| CTCTTCGCATTTGACGATGC+TGG | 0.383965 | 4.4:+64216236 | None:intergenic |
| AGAAATCGAAGCTCATATTC+AGG | 0.409384 | 4.4:-64216277 | MS.gene74275:CDS |
| CCATATTATAGCTGGTTTCA+GGG | 0.419672 | 4.4:-64214053 | MS.gene74275:intron |
| TTGTAAAGTGAGGACTTTGT+TGG | 0.483498 | 4.4:-64212993 | MS.gene74275:CDS |
| GTTCTGCAGTTTGATACTGT+TGG | 0.483572 | 4.4:-64216162 | MS.gene74275:CDS |
| CAGGGAATCAGTGAGTACTT+TGG | 0.487807 | 4.4:-64214035 | MS.gene74275:CDS |
| GGACGATATGGTTAACAGAA+TGG | 0.534903 | 4.4:-64213981 | MS.gene74275:CDS |
| GTTGGATTCGTAACTGTCGC+TGG | 0.541135 | 4.4:-64216144 | MS.gene74275:intron |
| CATCGTCAAATGCGAAGAGA+TGG | 0.541364 | 4.4:-64216232 | MS.gene74275:CDS |
| GATCTTCATAATTCAAACTC+AGG | 0.543274 | 4.4:-64212872 | None:intergenic |
| ATCAGTGAGTACTTTGGAGA+AGG | 0.572875 | 4.4:-64214029 | MS.gene74275:CDS |
| ACTAAGGAAGCTGAATTGAT+CGG | 0.587240 | 4.4:-64216195 | MS.gene74275:CDS |
| ATAGAGAAAATTGTAAAGTG+AGG | 0.634744 | 4.4:-64213003 | MS.gene74275:CDS |
| AGCTCATATTCAGGTCACAC+GGG | 0.635748 | 4.4:-64216268 | MS.gene74275:CDS |
| GCTGAATTGATCGGAATCTG+TGG | 0.649832 | 4.4:-64216186 | MS.gene74275:CDS |
| AAGCTCATATTCAGGTCACA+CGG | 0.669931 | 4.4:-64216269 | MS.gene74275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATAAATATATTAAAGA+AGG | + | chr4.4:64214719-64214738 | None:intergenic | 10.0% |
| !! | TATATATTAGTAGAAAAATA+TGG | + | chr4.4:64215630-64215649 | None:intergenic | 10.0% |
| !! | TTATTTAACAATTAATTGTT+CGG | - | chr4.4:64215033-64215052 | MS.gene74275:intron | 10.0% |
| !!! | TTTTTTCTTCAAATTTTTAT+TGG | - | chr4.4:64213317-64213336 | MS.gene74275:intron | 10.0% |
| !! | ACAGATTAAAATTAACTTTA+AGG | - | chr4.4:64213883-64213902 | MS.gene74275:intron | 15.0% |
| !! | AGTACTATCATTATTATATT+TGG | + | chr4.4:64215544-64215563 | None:intergenic | 15.0% |
| !! | ATTGAAATGATACATAATTA+AGG | + | chr4.4:64216045-64216064 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAATTTGCCTT+GGG | + | chr4.4:64213626-64213645 | None:intergenic | 15.0% |
| !! | TAAAAACTAAAAAGAATTCA+CGG | + | chr4.4:64214978-64214997 | None:intergenic | 15.0% |
| !! | TACTAATATATAAAGACAAA+TGG | - | chr4.4:64215638-64215657 | MS.gene74275:intron | 15.0% |
| !! | TGAAGAAATATAAATATAAC+AGG | + | chr4.4:64214819-64214838 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAAATTTGCCT+TGG | + | chr4.4:64213627-64213646 | None:intergenic | 15.0% |
| !!! | ACTTTAATCTTTTTTATATC+TGG | - | chr4.4:64214774-64214793 | MS.gene74275:intron | 15.0% |
| !!! | ATATATTTACGTTTGTTTTA+TGG | + | chr4.4:64215880-64215899 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGCTTACTTTTT+AGG | - | chr4.4:64213490-64213509 | MS.gene74275:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr4.4:64213566-64213585 | None:intergenic | 15.0% |
| !!! | TTTTTCTATTCAAATAGAAA+AGG | - | chr4.4:64215933-64215952 | MS.gene74275:intron | 15.0% |
| !! | AAAAAAAAAAATTTGCCTTG+GGG | + | chr4.4:64213625-64213644 | None:intergenic | 20.0% |
| !! | AAAGATTAAAGTAAAGCATA+TGG | + | chr4.4:64214766-64214785 | None:intergenic | 20.0% |
| !! | AAAGATTGTTTACTGAAATT+TGG | - | chr4.4:64213998-64214017 | MS.gene74275:CDS | 20.0% |
| !! | AAATTTGGATTGTTATATCA+AGG | - | chr4.4:64214013-64214032 | MS.gene74275:CDS | 20.0% |
| !! | AAGAAAATCAAAAACAAAGT+GGG | + | chr4.4:64214245-64214264 | None:intergenic | 20.0% |
| !! | AATATATTAAAGAAGGAAAC+AGG | + | chr4.4:64214712-64214731 | None:intergenic | 20.0% |
| !! | AATGGACATTAAATTAACAT+AGG | - | chr4.4:64214667-64214686 | MS.gene74275:intron | 20.0% |
| !! | ATAAATTCATATATCTGAGT+TGG | + | chr4.4:64215994-64216013 | None:intergenic | 20.0% |
| !! | TGTATATCTTATGTAGAAAT+AGG | - | chr4.4:64214491-64214510 | MS.gene74275:intron | 20.0% |
| !! | TTGTACCAAAAAAAAATTAC+CGG | - | chr4.4:64214369-64214388 | MS.gene74275:intron | 20.0% |
| !!! | AAATAGTATTTGCAACTTTT+TGG | - | chr4.4:64213921-64213940 | MS.gene74275:intron | 20.0% |
| !!! | CAGATTATTGATCAAATTTT+TGG | - | chr4.4:64213155-64213174 | MS.gene74275:intron | 20.0% |
| !!! | GAATTGTGTTTTGAAAAATT+CGG | - | chr4.4:64216234-64216253 | MS.gene74275:CDS | 20.0% |
| !!! | GTTTTGTAGTTTTTTTCTTA+GGG | - | chr4.4:64213749-64213768 | MS.gene74275:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr4.4:64213567-64213586 | None:intergenic | 20.0% |
| !!! | TATTACCGGTAATTTTTTTT+TGG | + | chr4.4:64214377-64214396 | None:intergenic | 20.0% |
| !!! | TCCATTTTTAACTTTTTGTT+TGG | - | chr4.4:64215339-64215358 | MS.gene74275:intron | 20.0% |
| !!! | TCTTTTTGTGTTAACATATT+AGG | - | chr4.4:64213466-64213485 | MS.gene74275:intron | 20.0% |
| !!! | TGAAAATGAAATTCAACTTT+TGG | - | chr4.4:64216204-64216223 | MS.gene74275:CDS | 20.0% |
| !!! | TTAAATTTGAAATCAGCATA+TGG | - | chr4.4:64214886-64214905 | MS.gene74275:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr4.4:64213565-64213584 | None:intergenic | 20.0% |
| !!! | TTTTATACTGTTTTGCTTAT+GGG | - | chr4.4:64215063-64215082 | MS.gene74275:intron | 20.0% |
| !!! | TTTTGTAGTTTTTTTCTTAG+GGG | - | chr4.4:64213750-64213769 | MS.gene74275:intron | 20.0% |
| !!! | TTTTTATACTGTTTTGCTTA+TGG | - | chr4.4:64215062-64215081 | MS.gene74275:intron | 20.0% |
| !!! | TTTTTTTTAAAAATGACACG+TGG | - | chr4.4:64213637-64213656 | MS.gene74275:intron | 20.0% |
| ! | AAAAAAAAAATTTGCCTTGG+GGG | + | chr4.4:64213624-64213643 | None:intergenic | 25.0% |
| ! | AAAGTAAAGCATATGGTTAT+TGG | + | chr4.4:64214759-64214778 | None:intergenic | 25.0% |
| ! | AAATAGGAGAACACAAAAAA+TGG | - | chr4.4:64214507-64214526 | MS.gene74275:intron | 25.0% |
| ! | AATCAATTGGTCATCAAATT+AGG | + | chr4.4:64216075-64216094 | None:intergenic | 25.0% |
| ! | AATTATTCTCTGTAATATCG+TGG | - | chr4.4:64214075-64214094 | MS.gene74275:intron | 25.0% |
| ! | AATTTAACCGATCAAATTGT+TGG | + | chr4.4:64213430-64213449 | None:intergenic | 25.0% |
| ! | ACATAAATGCATACTACATA+TGG | + | chr4.4:64215376-64215395 | None:intergenic | 25.0% |
| ! | AGAAAATCAAAAACAAAGTG+GGG | + | chr4.4:64214244-64214263 | None:intergenic | 25.0% |
| ! | ATAGAGAAAATTGTAAAGTG+AGG | - | chr4.4:64216155-64216174 | MS.gene74275:CDS | 25.0% |
| ! | CAAGAAAATCAAAAACAAAG+TGG | + | chr4.4:64214246-64214265 | None:intergenic | 25.0% |
| ! | CTTCATAGATATTATCTGAA+TGG | - | chr4.4:64213382-64213401 | MS.gene74275:intron | 25.0% |
| ! | GACATTAAATTAACATAGGA+AGG | - | chr4.4:64214671-64214690 | MS.gene74275:intron | 25.0% |
| ! | GCCAAACAAAAAGTTAAAAA+TGG | + | chr4.4:64215343-64215362 | None:intergenic | 25.0% |
| ! | TAAGTGATTTCCTTTATGAA+AGG | - | chr4.4:64214428-64214447 | MS.gene74275:intron | 25.0% |
| ! | TAGATATTATCTGAATGGAA+CGG | - | chr4.4:64213387-64213406 | MS.gene74275:intron | 25.0% |
| ! | TATTATATTTGGCCAACTTT+AGG | + | chr4.4:64215533-64215552 | None:intergenic | 25.0% |
| ! | TCAAATGTCTCACATAATAT+TGG | - | chr4.4:64215785-64215804 | MS.gene74275:intron | 25.0% |
| ! | TGTAGTATGCATTTATGTTA+TGG | - | chr4.4:64215378-64215397 | MS.gene74275:intron | 25.0% |
| ! | TGTTAAACCAACAATTTGAT+CGG | - | chr4.4:64213420-64213439 | MS.gene74275:intron | 25.0% |
| ! | TTAACAGAATGGATGAAAAA+CGG | - | chr4.4:64215188-64215207 | MS.gene74275:intron | 25.0% |
| !!! | AACTGCTGGAATTATTTTTT+GGG | - | chr4.4:64215272-64215291 | MS.gene74275:intron | 25.0% |
| !!! | ATTTTGACAAATAACCAACT+TGG | - | chr4.4:64214841-64214860 | MS.gene74275:intron | 25.0% |
| !!! | CAATTTCTCTTTGAAATTCT+AGG | + | chr4.4:64216132-64216151 | None:intergenic | 25.0% |
| !!! | CACTTTGTTTTTGATTTTCT+TGG | - | chr4.4:64214244-64214263 | MS.gene74275:intron | 25.0% |
| !!! | GGTTTTGTAGTTTTTTTCTT+AGG | - | chr4.4:64213748-64213767 | MS.gene74275:intron | 25.0% |
| !!! | TGTTTTGAAAAATTCGGTTT+TGG | - | chr4.4:64216240-64216259 | MS.gene74275:CDS | 25.0% |
| !!! | TTATTTTCTTTAGAGATTGC+TGG | + | chr4.4:64215300-64215319 | None:intergenic | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | + | chr4.4:64213564-64213583 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCCATATTATAGC+TGG | - | chr4.4:64215097-64215116 | MS.gene74275:intron | 25.0% |
| AAAAGGAAACAGTGTATGTT+AGG | - | chr4.4:64215950-64215969 | MS.gene74275:intron | 30.0% | |
| AAAGATTAATCACTGCTATG+CGG | - | chr4.4:64214952-64214971 | MS.gene74275:intron | 30.0% | |
| AAGATGAAAAAAACTGTACC+TGG | - | chr4.4:64215415-64215434 | MS.gene74275:intron | 30.0% | |
| AATGGTAGCATATAAGATGT+TGG | - | chr4.4:64215656-64215675 | MS.gene74275:intron | 30.0% | |
| AGAACTTATGCAATTTGACT+TGG | + | chr4.4:64214175-64214194 | None:intergenic | 30.0% | |
| AGATGAAAAAAACTGTACCT+GGG | - | chr4.4:64215416-64215435 | MS.gene74275:intron | 30.0% | |
| ATAAAGCGTGCATATATTAC+CGG | + | chr4.4:64214391-64214410 | None:intergenic | 30.0% | |
| ATATACATTCTCTACTGTGA+CGG | + | chr4.4:64214478-64214497 | None:intergenic | 30.0% | |
| ATATATAACTGTTGGACTGT+TGG | + | chr4.4:64214295-64214314 | None:intergenic | 30.0% | |
| ATGTCTCACATAATATTGGA+TGG | - | chr4.4:64215789-64215808 | MS.gene74275:intron | 30.0% | |
| GAAAATCAAAAACAAAGTGG+GGG | + | chr4.4:64214243-64214262 | None:intergenic | 30.0% | |
| GATCTTCATAATTCAAACTC+AGG | - | chr4.4:64216286-64216305 | MS.gene74275:CDS | 30.0% | |
| GTGTTGTCTTAAAAACAAGA+GGG | - | chr4.4:64215156-64215175 | MS.gene74275:intron | 30.0% | |
| TAAAAGCTTGTGTGTCTAAT+AGG | - | chr4.4:64214921-64214940 | MS.gene74275:intron | 30.0% | |
| TAATGTCCATTAAGAAGTGA+AGG | + | chr4.4:64214658-64214677 | None:intergenic | 30.0% | |
| TACTATTTATCAATAGTGCG+AGG | - | chr4.4:64215493-64215512 | MS.gene74275:intron | 30.0% | |
| TACTGCACATATATAACTGT+TGG | + | chr4.4:64214303-64214322 | None:intergenic | 30.0% | |
| TGCTACATTTGCAAAACTTA+GGG | + | chr4.4:64213594-64213613 | None:intergenic | 30.0% | |
| TGTGTTGTCTTAAAAACAAG+AGG | - | chr4.4:64215155-64215174 | MS.gene74275:intron | 30.0% | |
| ! | ATATATGCACGCTTTATTCA+AGG | - | chr4.4:64214394-64214413 | MS.gene74275:intron | 30.0% |
| ! | ATGTCTCATTGTTTCTCATA+TGG | - | chr4.4:64215837-64215856 | MS.gene74275:intron | 30.0% |
| ! | CATGACTTCATTAGAAGTTT+TGG | + | chr4.4:64213243-64213262 | None:intergenic | 30.0% |
| ! | TCTTCTTTTGCCTTTCATAA+AGG | + | chr4.4:64214441-64214460 | None:intergenic | 30.0% |
| ! | TTGCTTGAAAACATGGTTTT+TGG | - | chr4.4:64214139-64214158 | MS.gene74275:intron | 30.0% |
| ! | TTTTGCAAATGTAGCAGTTT+TGG | - | chr4.4:64213598-64213617 | MS.gene74275:intron | 30.0% |
| !! | AATTGATTTGTTTCCAAGCA+GGG | - | chr4.4:64216087-64216106 | MS.gene74275:intron | 30.0% |
| !!! | AAGCTTACTTTTTAATAGCG+TGG | - | chr4.4:64213818-64213837 | MS.gene74275:intron | 30.0% |
| !!! | CAACTGCTGGAATTATTTTT+TGG | - | chr4.4:64215271-64215290 | MS.gene74275:intron | 30.0% |
| !!! | TAGAAGTTTTGGTGCTATAA+AGG | + | chr4.4:64213232-64213251 | None:intergenic | 30.0% |
| AACAGTCCTTCACTTCTTAA+TGG | - | chr4.4:64214649-64214668 | MS.gene74275:intron | 35.0% | |
| ACTAAGGAAGCTGAATTGAT+CGG | - | chr4.4:64212963-64212982 | MS.gene74275:CDS | 35.0% | |
| AGAAATCGAAGCTCATATTC+AGG | - | chr4.4:64212881-64212900 | MS.gene74275:CDS | 35.0% | |
| ATCAGCATATGGAGAAAACT+TGG | - | chr4.4:64214897-64214916 | MS.gene74275:intron | 35.0% | |
| ATTATCTGAATGGAACGGAA+TGG | - | chr4.4:64213392-64213411 | MS.gene74275:intron | 35.0% | |
| CAAGTTAAATTTGCAACTGC+TGG | - | chr4.4:64215258-64215277 | MS.gene74275:intron | 35.0% | |
| CGTAGAATTGCTTGAAAACA+TGG | - | chr4.4:64214132-64214151 | MS.gene74275:intron | 35.0% | |
| CTACATTTGCAAAACTTAGG+GGG | + | chr4.4:64213592-64213611 | None:intergenic | 35.0% | |
| CTCACATAATATTGGATGGA+GGG | - | chr4.4:64215793-64215812 | MS.gene74275:intron | 35.0% | |
| CTGCTACATTTGCAAAACTT+AGG | + | chr4.4:64213595-64213614 | None:intergenic | 35.0% | |
| CTGCTTGGAAACAAATCAAT+TGG | + | chr4.4:64216088-64216107 | None:intergenic | 35.0% | |
| GAAAGAAAAATGACAGATCC+AGG | + | chr4.4:64214580-64214599 | None:intergenic | 35.0% | |
| GACAAATAACCAACTTGGTT+TGG | - | chr4.4:64214846-64214865 | MS.gene74275:intron | 35.0% | |
| GCATAAGTTCTTCTTTCTCA+GGG | - | chr4.4:64214184-64214203 | MS.gene74275:intron | 35.0% | |
| GCTACATTTGCAAAACTTAG+GGG | + | chr4.4:64213593-64213612 | None:intergenic | 35.0% | |
| TAAAAACAAGAGGGACGATA+TGG | - | chr4.4:64215165-64215184 | MS.gene74275:intron | 35.0% | |
| TAGCAGTGATTAATCTTTGC+CGG | + | chr4.4:64214950-64214969 | None:intergenic | 35.0% | |
| TCTCACATAATATTGGATGG+AGG | - | chr4.4:64215792-64215811 | MS.gene74275:intron | 35.0% | |
| TGAAGAACCATGAATAGCAA+GGG | + | chr4.4:64214272-64214291 | None:intergenic | 35.0% | |
| TGCATAAGTTCTTCTTTCTC+AGG | - | chr4.4:64214183-64214202 | MS.gene74275:intron | 35.0% | |
| TTGTAAAGTGAGGACTTTGT+TGG | - | chr4.4:64216165-64216184 | MS.gene74275:CDS | 35.0% | |
| ! | CCATATTATAGCTGGTTTCA+GGG | - | chr4.4:64215105-64215124 | MS.gene74275:intron | 35.0% |
| ! | CTTTCCTAAAGTTGCGATTT+TGG | - | chr4.4:64213538-64213557 | MS.gene74275:intron | 35.0% |
| ! | GGAGAATCATTTTGCAACTA+AGG | - | chr4.4:64212947-64212966 | MS.gene74275:CDS | 35.0% |
| ! | TCAGATTTTCCAAACCAAGT+TGG | + | chr4.4:64214858-64214877 | None:intergenic | 35.0% |
| ! | TCCATATTATAGCTGGTTTC+AGG | - | chr4.4:64215104-64215123 | MS.gene74275:intron | 35.0% |
| !! | AGCTTTTGTTTAAGCATGAC+AGG | - | chr4.4:64213962-64213981 | MS.gene74275:intron | 35.0% |
| !! | CAATTGATTTGTTTCCAAGC+AGG | - | chr4.4:64216086-64216105 | MS.gene74275:intron | 35.0% |
| !! | CTTTTGTTTAAGCATGACAG+GGG | - | chr4.4:64213964-64213983 | MS.gene74275:intron | 35.0% |
| !! | GCTTTTGTTTAAGCATGACA+GGG | - | chr4.4:64213963-64213982 | MS.gene74275:intron | 35.0% |
| !! | GTTTTCAAGCAATTCTACGT+GGG | + | chr4.4:64214131-64214150 | None:intergenic | 35.0% |
| !! | TGTTTTCAAGCAATTCTACG+TGG | + | chr4.4:64214132-64214151 | None:intergenic | 35.0% |
| AAGCTCATATTCAGGTCACA+CGG | - | chr4.4:64212889-64212908 | MS.gene74275:CDS | 40.0% | |
| AAGGACTGTTACTGATAGCT+AGG | + | chr4.4:64214639-64214658 | None:intergenic | 40.0% | |
| AAGTTCTTCTTTCTCAGGGA+CGG | - | chr4.4:64214188-64214207 | MS.gene74275:intron | 40.0% | |
| ACATAATATTGGATGGAGGG+AGG | - | chr4.4:64215796-64215815 | MS.gene74275:intron | 40.0% | |
| AGCAGTGATTAATCTTTGCC+GGG | + | chr4.4:64214949-64214968 | None:intergenic | 40.0% | |
| AGCTCCAAAGAACCTAAAGT+TGG | - | chr4.4:64215518-64215537 | MS.gene74275:intron | 40.0% | |
| CACATGTGATTAGGTCGTAT+GGG | - | chr4.4:64215443-64215462 | MS.gene74275:intron | 40.0% | |
| CCCTGAAACCAGCTATAATA+TGG | + | chr4.4:64215108-64215127 | None:intergenic | 40.0% | |
| CTCTGTAATATCGTGGATCA+TGG | - | chr4.4:64214082-64214101 | MS.gene74275:intron | 40.0% | |
| GGACGATATGGTTAACAGAA+TGG | - | chr4.4:64215177-64215196 | MS.gene74275:intron | 40.0% | |
| GTGAAGAACCATGAATAGCA+AGG | + | chr4.4:64214273-64214292 | None:intergenic | 40.0% | |
| GTTCTGCAGTTTGATACTGT+TGG | - | chr4.4:64212996-64213015 | MS.gene74275:CDS | 40.0% | |
| TCACATGTGATTAGGTCGTA+TGG | - | chr4.4:64215442-64215461 | MS.gene74275:intron | 40.0% | |
| TTGTGTGTCTAATAGGTTCC+CGG | - | chr4.4:64214928-64214947 | MS.gene74275:intron | 40.0% | |
| ! | ATCAGTGAGTACTTTGGAGA+AGG | - | chr4.4:64215129-64215148 | MS.gene74275:intron | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | - | chr4.4:64213779-64213798 | MS.gene74275:intron | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | + | chr4.4:64213777-64213796 | None:intergenic | 40.0% |
| ! | GCAACTTTAGGAAAGTTAGC+AGG | + | chr4.4:64213533-64213552 | None:intergenic | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | - | chr4.4:64213780-64213799 | MS.gene74275:intron | 40.0% |
| ! | TTGGCCAACTTTAGGTTCTT+TGG | + | chr4.4:64215525-64215544 | None:intergenic | 40.0% |
| !! | ACCGAGTCAAAATTGGTCTT+GGG | - | chr4.4:64213690-64213709 | MS.gene74275:intron | 40.0% |
| !! | ATCCAGGAATTTTGAGTAGC+GGG | + | chr4.4:64214564-64214583 | None:intergenic | 40.0% |
| !! | GATCCAGGAATTTTGAGTAG+CGG | + | chr4.4:64214565-64214584 | None:intergenic | 40.0% |
| !! | TTCGGTTTTGGCATTTGTAG+AGG | - | chr4.4:64216252-64216271 | MS.gene74275:CDS | 40.0% |
| AGCGTAGACCGAGTCAAAAT+TGG | - | chr4.4:64213683-64213702 | MS.gene74275:intron | 45.0% | |
| AGCTCATATTCAGGTCACAC+GGG | - | chr4.4:64212890-64212909 | MS.gene74275:CDS | 45.0% | |
| CAGGGAATCAGTGAGTACTT+TGG | - | chr4.4:64215123-64215142 | MS.gene74275:intron | 45.0% | |
| CATCGTCAAATGCGAAGAGA+TGG | - | chr4.4:64212926-64212945 | MS.gene74275:CDS | 45.0% | |
| CATTTGCAAAACTTAGGGGG+CGG | + | chr4.4:64213589-64213608 | None:intergenic | 45.0% | |
| CTAATCACATGTGAATGCCC+AGG | + | chr4.4:64215436-64215455 | None:intergenic | 45.0% | |
| CTGGGCATTCACATGTGATT+AGG | - | chr4.4:64215434-64215453 | MS.gene74275:intron | 45.0% | |
| GCAGTAAATTCTTCCCTGCT+TGG | + | chr4.4:64216103-64216122 | None:intergenic | 45.0% | |
| GCTGAATTGATCGGAATCTG+TGG | - | chr4.4:64212972-64212991 | MS.gene74275:CDS | 45.0% | |
| GGGACCAAAATCGCAACTTT+GGG | - | chr4.4:64213770-64213789 | MS.gene74275:intron | 45.0% | |
| GTGATTAGGTCGTATGGGAT+GGG | - | chr4.4:64215448-64215467 | MS.gene74275:intron | 45.0% | |
| TGCCACGGTTGCAAAACATA+GGG | - | chr4.4:64213722-64213741 | MS.gene74275:intron | 45.0% | |
| TGTCAGTGTCAGTGTTGTGT+TGG | + | chr4.4:64213273-64213292 | None:intergenic | 45.0% | |
| TGTGATTAGGTCGTATGGGA+TGG | - | chr4.4:64215447-64215466 | MS.gene74275:intron | 45.0% | |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | - | chr4.4:64213781-64213800 | MS.gene74275:intron | 45.0% |
| ! | GACCGAGTCAAAATTGGTCT+TGG | - | chr4.4:64213689-64213708 | MS.gene74275:intron | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | - | chr4.4:64213782-64213801 | MS.gene74275:intron | 45.0% |
| ! | TGTCAGTGTTGTGTTGGTGT+TGG | + | chr4.4:64213267-64213286 | None:intergenic | 45.0% |
| ! | TTTTGCAACCGTGGCAGTTT+TGG | + | chr4.4:64213718-64213737 | None:intergenic | 45.0% |
| !! | CCGAGTCAAAATTGGTCTTG+GGG | - | chr4.4:64213691-64213710 | MS.gene74275:intron | 45.0% |
| !! | CGAGTCAAAATTGGTCTTGG+GGG | - | chr4.4:64213692-64213711 | MS.gene74275:intron | 45.0% |
| !! | CTTGGTACCCTTGCTATTCA+TGG | - | chr4.4:64214262-64214281 | MS.gene74275:intron | 45.0% |
| !!! | CCCCAAGACCAATTTTGACT+CGG | + | chr4.4:64213694-64213713 | None:intergenic | 45.0% |
| !!! | TGGATGGAGGGAGGTATTTT+TGG | - | chr4.4:64215805-64215824 | MS.gene74275:intron | 45.0% |
| CCACGGTTGCAAAACATAGG+GGG | - | chr4.4:64213724-64213743 | MS.gene74275:intron | 50.0% | |
| CGATGTGTCAGTGTTGTGTC+TGG | - | chr4.4:64213343-64213362 | MS.gene74275:intron | 50.0% | |
| CTCCCGCTACTCAAAATTCC+TGG | - | chr4.4:64214559-64214578 | MS.gene74275:intron | 50.0% | |
| CTCTTCGCATTTGACGATGC+TGG | + | chr4.4:64212925-64212944 | None:intergenic | 50.0% | |
| CTGCCACGGTTGCAAAACAT+AGG | - | chr4.4:64213721-64213740 | MS.gene74275:intron | 50.0% | |
| GCCACGGTTGCAAAACATAG+GGG | - | chr4.4:64213723-64213742 | MS.gene74275:intron | 50.0% | |
| GGGGACCAAAATCGCAACTT+TGG | - | chr4.4:64213769-64213788 | MS.gene74275:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+AGG | + | chr4.4:64213545-64213564 | None:intergenic | 50.0% | |
| GTTGGATTCGTAACTGTCGC+TGG | - | chr4.4:64213014-64213033 | MS.gene74275:CDS | 50.0% | |
| CGGTTGCAAAACATAGGGGG+CGG | - | chr4.4:64213727-64213746 | MS.gene74275:intron | 55.0% | |
| GACACGTGGCACCTCACTTA+GGG | - | chr4.4:64213651-64213670 | MS.gene74275:intron | 55.0% | |
| TGACACGTGGCACCTCACTT+AGG | - | chr4.4:64213650-64213669 | MS.gene74275:intron | 55.0% | |
| ! | CCCCCTATGTTTTGCAACCG+TGG | + | chr4.4:64213727-64213746 | None:intergenic | 55.0% |
| !! | TGTAGCAGTTTTGGCCCCCA+AGG | - | chr4.4:64213607-64213626 | MS.gene74275:intron | 55.0% |
| ATGCACGTCGGCACTTGTGC+AGG | - | chr4.4:64214211-64214230 | MS.gene74275:intron | 60.0% | |
| CTGACGTGGCACCCTAAGTG+AGG | + | chr4.4:64213665-64213684 | None:intergenic | 60.0% | |
| CTTGGGGGCCAAAACTGCCA+CGG | - | chr4.4:64213707-64213726 | MS.gene74275:intron | 60.0% | |
| TCTCAGGGACGGATGCACGT+CGG | - | chr4.4:64214199-64214218 | MS.gene74275:intron | 60.0% | |
| !! | TGACTCGGTCTACGCTGACG+TGG | + | chr4.4:64213679-64213698 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 64212873 | 64216307 | 64212873 | ID=MS.gene74275 |
| chr4.4 | mRNA | 64212873 | 64216307 | 64212873 | ID=MS.gene74275.t1;Parent=MS.gene74275 |
| chr4.4 | exon | 64216145 | 64216307 | 64216145 | ID=MS.gene74275.t1.exon1;Parent=MS.gene74275.t1 |
| chr4.4 | CDS | 64216145 | 64216307 | 64216145 | ID=cds.MS.gene74275.t1;Parent=MS.gene74275.t1 |
| chr4.4 | exon | 64213971 | 64214064 | 64213971 | ID=MS.gene74275.t1.exon2;Parent=MS.gene74275.t1 |
| chr4.4 | CDS | 64213971 | 64214064 | 64213971 | ID=cds.MS.gene74275.t1;Parent=MS.gene74275.t1 |
| chr4.4 | exon | 64212873 | 64213072 | 64212873 | ID=MS.gene74275.t1.exon3;Parent=MS.gene74275.t1 |
| chr4.4 | CDS | 64212873 | 64213072 | 64212873 | ID=cds.MS.gene74275.t1;Parent=MS.gene74275.t1 |
| Gene Sequence |
| Protein sequence |
