Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75220.t1 | XP_013466946.1 | 97.7 | 701 | 16 | 0 | 1 | 701 | 1 | 701 | 0.00E+00 | 1407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75220.t1 | Q9SS87 | 27.6 | 721 | 441 | 24 | 27 | 683 | 34 | 737 | 7.4e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75220.t1 | E2FKJ2 | 97.7 | 701 | 16 | 0 | 1 | 701 | 1 | 701 | 0.0e+00 | 1407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene75220 | 0.809231 | 2.10E-50 | -1.69E-46 |
| MS.gene049698 | MS.gene75220 | 0.811882 | 5.61E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene75220 | 0.832877 | 7.36E-56 | -1.69E-46 |
| MS.gene05017 | MS.gene75220 | 0.829851 | 4.08E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene75220 | 0.818419 | 1.98E-52 | -1.69E-46 |
| MS.gene051067 | MS.gene75220 | 0.814185 | 1.75E-51 | -1.69E-46 |
| MS.gene051423 | MS.gene75220 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene75220 | 0.805676 | 1.19E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene75220 | 0.808106 | 3.64E-50 | -1.69E-46 |
| MS.gene053417 | MS.gene75220 | 0.805931 | 1.05E-49 | -1.69E-46 |
| MS.gene054118 | MS.gene75220 | 0.847766 | 9.39E-60 | -1.69E-46 |
| MS.gene055131 | MS.gene75220 | 0.803807 | 2.92E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene75220 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene056042 | MS.gene75220 | 0.818838 | 1.59E-52 | -1.69E-46 |
| MS.gene056870 | MS.gene75220 | 0.820522 | 6.56E-53 | -1.69E-46 |
| MS.gene058823 | MS.gene75220 | 0.823601 | 1.27E-53 | -1.69E-46 |
| MS.gene058909 | MS.gene75220 | 0.864592 | 1.09E-64 | -1.69E-46 |
| MS.gene058912 | MS.gene75220 | 0.862959 | 3.50E-64 | -1.69E-46 |
| MS.gene059300 | MS.gene75220 | 0.821376 | 4.17E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene75220 | 0.819928 | 8.97E-53 | -1.69E-46 |
| MS.gene060825 | MS.gene75220 | 0.856764 | 2.58E-62 | -1.69E-46 |
| MS.gene061260 | MS.gene75220 | 0.807138 | 5.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75220.t1 | MTR_1g040360 | 97.718 | 701 | 16 | 0 | 1 | 701 | 1 | 701 | 0.0 | 1434 |
| MS.gene75220.t1 | MTR_1g075180 | 46.852 | 683 | 310 | 15 | 16 | 687 | 2 | 642 | 0.0 | 586 |
| MS.gene75220.t1 | MTR_1g075153 | 42.690 | 684 | 355 | 9 | 2 | 677 | 8 | 662 | 0.0 | 549 |
| MS.gene75220.t1 | MTR_1g075170 | 42.669 | 682 | 356 | 13 | 5 | 677 | 11 | 666 | 4.25e-172 | 508 |
| MS.gene75220.t1 | MTR_1g074950 | 37.668 | 669 | 392 | 11 | 24 | 685 | 20 | 670 | 4.15e-150 | 452 |
| MS.gene75220.t1 | MTR_1g074990 | 36.132 | 667 | 402 | 10 | 25 | 685 | 20 | 668 | 3.02e-149 | 449 |
| MS.gene75220.t1 | MTR_1g075230 | 35.693 | 664 | 397 | 11 | 24 | 677 | 19 | 662 | 5.61e-142 | 431 |
| MS.gene75220.t1 | MTR_1g075095 | 35.347 | 662 | 402 | 11 | 25 | 678 | 20 | 663 | 6.31e-140 | 425 |
| MS.gene75220.t1 | MTR_1g075030 | 35.045 | 662 | 404 | 11 | 25 | 678 | 20 | 663 | 2.41e-139 | 424 |
| MS.gene75220.t1 | MTR_7g032660 | 30.186 | 699 | 423 | 23 | 30 | 677 | 26 | 710 | 7.58e-87 | 288 |
| MS.gene75220.t1 | MTR_8g089660 | 29.037 | 706 | 421 | 25 | 30 | 677 | 20 | 703 | 1.92e-75 | 257 |
| MS.gene75220.t1 | MTR_3g075450 | 28.315 | 724 | 448 | 23 | 3 | 676 | 2 | 704 | 3.49e-72 | 248 |
| MS.gene75220.t1 | MTR_8g063020 | 38.798 | 183 | 85 | 6 | 93 | 274 | 36 | 192 | 1.46e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75220.t1 | AT3G01680 | 27.716 | 718 | 444 | 23 | 27 | 683 | 34 | 737 | 7.71e-67 | 234 |
| MS.gene75220.t1 | AT3G01670 | 25.369 | 745 | 452 | 26 | 4 | 676 | 108 | 820 | 7.59e-50 | 187 |
| MS.gene75220.t1 | AT3G01670 | 25.202 | 742 | 457 | 24 | 4 | 676 | 132 | 844 | 2.02e-49 | 186 |
| MS.gene75220.t1 | AT1G67790 | 24.319 | 514 | 345 | 15 | 28 | 517 | 9 | 502 | 7.42e-28 | 119 |
Find 137 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATCGTTCCTCGTTTC+TGG | 0.066845 | 1.4:+25064768 | MS.gene75220:CDS |
| CTCAAAAGTGGAACTGGTTT+TGG | 0.139446 | 1.4:+25064428 | MS.gene75220:CDS |
| TTCCATTGTAAGCAAATTAA+AGG | 0.155216 | 1.4:+25063289 | MS.gene75220:CDS |
| CATTAGAATATGGAAATTTC+TGG | 0.161510 | 1.4:+25062746 | MS.gene75220:CDS |
| GCAAAGTCATGTGTCCATTT+TGG | 0.177728 | 1.4:-25064659 | None:intergenic |
| CATGTGTTGGTATTCATTTC+AGG | 0.222644 | 1.4:+25064031 | MS.gene75220:CDS |
| AGATTCCTGTTGCTGTTTAT+TGG | 0.243721 | 1.4:+25062986 | MS.gene75220:CDS |
| AAATCATATGCATTGCATTA+TGG | 0.255922 | 1.4:-25064351 | None:intergenic |
| CAGAAATATGCTTCAGTTTA+CGG | 0.256894 | 1.4:-25062111 | None:intergenic |
| TCTATCCCTTGGCTGGAATA+AGG | 0.257305 | 1.4:+25064254 | MS.gene75220:CDS |
| GAAGACAGACTTCCCTTATC+TGG | 0.274120 | 1.4:+25062073 | MS.gene75220:CDS |
| GTGAATGTGAATCAGATTAA+AGG | 0.277979 | 1.4:+25064602 | MS.gene75220:intron |
| AGTCTTCCACAATGAAATTC+AGG | 0.283440 | 1.4:+25063589 | MS.gene75220:CDS |
| GATTCCTGTTGCTGTTTATT+GGG | 0.286090 | 1.4:+25062987 | MS.gene75220:CDS |
| ATGGAGGAACAGACCCAAAA+TGG | 0.329313 | 1.4:+25064645 | MS.gene75220:CDS |
| TTTGAATCAGGACAGTAAAT+AGG | 0.340556 | 1.4:-25065112 | None:intergenic |
| GACACATTCATCTTCATATA+TGG | 0.340751 | 1.4:+25064626 | MS.gene75220:CDS |
| CAGGTGAGCTAGAAGATTAC+TGG | 0.342565 | 1.4:+25063510 | MS.gene75220:intron |
| GTTCTTCCACAGTTTGAATC+AGG | 0.348453 | 1.4:-25065124 | None:intergenic |
| AGGTTAGCATCGAAGTGTTT+AGG | 0.358989 | 1.4:+25064002 | MS.gene75220:intron |
| TTATCATCACTCCATGCTAA+TGG | 0.362851 | 1.4:-25061805 | None:intergenic |
| TGAATGTGAATCAGATTAAA+GGG | 0.366060 | 1.4:+25064603 | MS.gene75220:intron |
| CAAATTCAGCTTTGTGAAGT+AGG | 0.370216 | 1.4:-25064189 | None:intergenic |
| GAAGAACCAAGAGAACTAAA+AGG | 0.372963 | 1.4:+25064112 | MS.gene75220:CDS |
| GGATTCAGAACAGGTAGAAT+TGG | 0.383372 | 1.4:-25064310 | None:intergenic |
| TTGGAAAAGCTTTCAACAAA+AGG | 0.397341 | 1.4:+25062919 | MS.gene75220:CDS |
| TATCATCACTCCATGCTAAT+GGG | 0.399622 | 1.4:-25061804 | None:intergenic |
| AGGGTCCAATCATCCACAAT+TGG | 0.400463 | 1.4:-25064169 | None:intergenic |
| CATTGCTGATTACAACAGTT+TGG | 0.400657 | 1.4:+25062858 | MS.gene75220:CDS |
| CGACCGAGCAGTTTCACATT+TGG | 0.403560 | 1.4:-25064917 | None:intergenic |
| CTTACAAGGTCTTGGAGTCT+TGG | 0.407678 | 1.4:-25064472 | None:intergenic |
| CACTTACTCAAAAGTGGAAC+TGG | 0.410991 | 1.4:+25064422 | MS.gene75220:CDS |
| TCATCATCTGTGGGACGAAA+AGG | 0.411574 | 1.4:-25064397 | None:intergenic |
| TTCTTGTAGTCCAGCGTAGA+TGG | 0.412320 | 1.4:-25064092 | None:intergenic |
| AATTTGTACTTACAAGGTCT+TGG | 0.416127 | 1.4:-25064480 | None:intergenic |
| CACCGGTGTGGACATGAGTT+AGG | 0.420531 | 1.4:-25061846 | None:intergenic |
| ATCGTTCCTCGTTTCTGGAT+TGG | 0.420969 | 1.4:+25064773 | MS.gene75220:CDS |
| AAAACCTCAACAATTTCTGT+TGG | 0.423007 | 1.4:-25063557 | None:intergenic |
| AAGATTACTGGAGGCGTAAG+AGG | 0.445082 | 1.4:+25063522 | MS.gene75220:CDS |
| ATAGCCCAATAAACAGCAAC+AGG | 0.445960 | 1.4:-25062991 | None:intergenic |
| GGATCCCAATTGTGGATGAT+TGG | 0.449147 | 1.4:+25064164 | MS.gene75220:CDS |
| GAGTACTTCTATCCCTTGGC+TGG | 0.451475 | 1.4:+25064247 | MS.gene75220:CDS |
| TGCATATTAGCACAAGCAAC+AGG | 0.456296 | 1.4:-25065058 | None:intergenic |
| TAGATGATGAGCACACTTCC+TGG | 0.460640 | 1.4:+25062628 | MS.gene75220:intron |
| GCCTAACATGTCGTCTTCAA+TGG | 0.463271 | 1.4:+25061723 | None:intergenic |
| CACCACTTGGTGTTTGAACT+AGG | 0.463904 | 1.4:-25062771 | None:intergenic |
| CGCTGATAGTGTTGCATCCA+AGG | 0.468545 | 1.4:+25061933 | MS.gene75220:CDS |
| AGCCTTTAATTTGCTTACAA+TGG | 0.473426 | 1.4:-25063291 | None:intergenic |
| GAATTTGTTTCAGGGATGAC+AGG | 0.473823 | 1.4:+25063234 | MS.gene75220:intron |
| CTGTCTTCTACAAGACCTAC+AGG | 0.477249 | 1.4:-25062058 | None:intergenic |
| AAATTCAGCTTTGTGAAGTA+GGG | 0.482259 | 1.4:-25064188 | None:intergenic |
| AGGAGGCTCATAACCAGATA+AGG | 0.484803 | 1.4:-25062086 | None:intergenic |
| TGATGGCTTGAACAGACAAA+TGG | 0.485289 | 1.4:+25063625 | MS.gene75220:CDS |
| CAAACAAGACCAGCCAGGTT+GGG | 0.490006 | 1.4:+25064877 | MS.gene75220:CDS |
| ATGAGTCACTTACTCAAAAG+TGG | 0.491847 | 1.4:+25064416 | MS.gene75220:CDS |
| TCTCGTCTCTTATGCTGTCT+AGG | 0.493672 | 1.4:-25064054 | None:intergenic |
| AAGAAGATTTCAAGATCTTG+TGG | 0.495575 | 1.4:+25064143 | MS.gene75220:CDS |
| CTACCTAGAGGATTCAGAAC+AGG | 0.496358 | 1.4:-25064319 | None:intergenic |
| TATGGGATTTCAGCTGATCA+AGG | 0.497173 | 1.4:-25062684 | None:intergenic |
| ATCAGCTGAAATCCCATACA+TGG | 0.498650 | 1.4:+25062689 | MS.gene75220:CDS |
| ACATTACTTGCAAGTGAAGC+TGG | 0.499453 | 1.4:-25061748 | None:intergenic |
| ACAAGGAGCAGAAAGCATAT+AGG | 0.503383 | 1.4:+25063320 | MS.gene75220:CDS |
| CATCATCTGTGGGACGAAAA+GGG | 0.509600 | 1.4:-25064396 | None:intergenic |
| AATTAAAGGCTCATCTTACA+AGG | 0.509783 | 1.4:+25063303 | MS.gene75220:CDS |
| GGGTCCAATCATCCACAATT+GGG | 0.510095 | 1.4:-25064168 | None:intergenic |
| GGAGGCTCATAACCAGATAA+GGG | 0.525657 | 1.4:-25062085 | None:intergenic |
| CTACCTGTTCTGAATCCTCT+AGG | 0.528603 | 1.4:+25064316 | MS.gene75220:CDS |
| GGTTGAGTACTTCTATCCCT+TGG | 0.529205 | 1.4:+25064243 | MS.gene75220:CDS |
| ACTGAAGCATATTTCTGCCC+AGG | 0.531572 | 1.4:+25062117 | MS.gene75220:CDS |
| CTTCCAAGTGTGTCACCACT+TGG | 0.532474 | 1.4:-25062784 | None:intergenic |
| CTGAAATCCCATACATGGGA+TGG | 0.532648 | 1.4:+25062694 | MS.gene75220:CDS |
| ACAAAACCACCACTCTCAGC+AGG | 0.533265 | 1.4:-25065214 | None:intergenic |
| TATCAACCTTATTCCAGCCA+AGG | 0.535936 | 1.4:-25064260 | None:intergenic |
| TGCTTGTGCTAATATGCAGT+TGG | 0.535959 | 1.4:+25065063 | MS.gene75220:CDS |
| ATGTGAGCATGGTGCTCACC+AGG | 0.537625 | 1.4:-25062646 | None:intergenic |
| GAGTTAGGTAAACGGTTTCG+AGG | 0.540103 | 1.4:-25061831 | None:intergenic |
| ACACCAAGTGGTGACACACT+TGG | 0.541076 | 1.4:+25062781 | MS.gene75220:CDS |
| TTCCACATCGTACCTTTCAC+CGG | 0.543184 | 1.4:-25061863 | None:intergenic |
| TGGCAGACTGGGACTCCTGT+AGG | 0.544529 | 1.4:+25062043 | MS.gene75220:intron |
| TTCAAGCCATCAAAGACAAG+GGG | 0.551538 | 1.4:-25063614 | None:intergenic |
| GTAATAGAGCATTTCCACTT+CGG | 0.551983 | 1.4:+25064734 | MS.gene75220:CDS |
| TTAGTAGAACCCAACCTGGC+TGG | 0.552075 | 1.4:-25064886 | None:intergenic |
| TGCATAGCTTCAGACAAAGC+AGG | 0.554275 | 1.4:-25062961 | None:intergenic |
| TGTCTCAAACAAGACCAGCC+AGG | 0.555894 | 1.4:+25064872 | MS.gene75220:CDS |
| GTGGACATGAGTTAGGTAAA+CGG | 0.556772 | 1.4:-25061839 | None:intergenic |
| TGTTGAGTGTATTACTGAGT+TGG | 0.559184 | 1.4:+25062900 | MS.gene75220:CDS |
| ATCAACCTTATTCCAGCCAA+GGG | 0.563390 | 1.4:-25064259 | None:intergenic |
| AACACTATCAGCGACTGCAC+TGG | 0.566260 | 1.4:-25061923 | None:intergenic |
| CTCATGTCCACACCGGTGAA+AGG | 0.569357 | 1.4:+25061851 | MS.gene75220:CDS |
| TAGCAATCGAGAAAATCAAA+AGG | 0.570446 | 1.4:+25064684 | MS.gene75220:CDS |
| TCAAACAAGACCAGCCAGGT+TGG | 0.571127 | 1.4:+25064876 | MS.gene75220:CDS |
| GTTAGCTACAAGTGTTGCCA+TGG | 0.571157 | 1.4:+25065163 | MS.gene75220:CDS |
| TGCTTCAGTTTACGGATAGG+AGG | 0.575601 | 1.4:-25062103 | None:intergenic |
| AACTCCAACAGAAATTGTTG+AGG | 0.575818 | 1.4:+25063553 | MS.gene75220:CDS |
| GTTTAGGAGGAAGCATGTGT+TGG | 0.578541 | 1.4:+25064018 | MS.gene75220:CDS |
| AGATTACTGGAGGCGTAAGA+GGG | 0.582113 | 1.4:+25063523 | MS.gene75220:CDS |
| ATATGCTTCAGTTTACGGAT+AGG | 0.583335 | 1.4:-25062106 | None:intergenic |
| AAACTTCAAACCCATTAGCA+TGG | 0.583737 | 1.4:+25061794 | MS.gene75220:CDS |
| GCTCCTCCTGCTGAGAGTGG+TGG | 0.584351 | 1.4:+25065208 | MS.gene75220:CDS |
| AATGTGAAACTGCTCGGTCG+CGG | 0.586302 | 1.4:+25064920 | MS.gene75220:CDS |
| ATAGGATCAAGAATATCAGA+AGG | 0.591889 | 1.4:-25065094 | None:intergenic |
| GATCTTGTGGATCCCAATTG+TGG | 0.592782 | 1.4:+25064156 | MS.gene75220:CDS |
| CTGTTCTGAATCCTCTAGGT+AGG | 0.593439 | 1.4:+25064320 | MS.gene75220:CDS |
| AGTAAGTGACTCATCATCTG+TGG | 0.597034 | 1.4:-25064407 | None:intergenic |
| TACTGTCCTGATTCAAACTG+TGG | 0.599493 | 1.4:+25065118 | MS.gene75220:CDS |
| CTTCTTCAATCCATCTACGC+TGG | 0.599801 | 1.4:+25064082 | MS.gene75220:CDS |
| TTAGCATCGAAGTGTTTAGG+AGG | 0.599845 | 1.4:+25064005 | MS.gene75220:CDS |
| ATCTGTGGGACGAAAAGGGA+AGG | 0.600329 | 1.4:-25064392 | None:intergenic |
| TTCAAACTGTGGAAGAACAA+TGG | 0.600916 | 1.4:+25065129 | MS.gene75220:CDS |
| GCTAGAAATGCCATGGTATG+TGG | 0.603153 | 1.4:+25064222 | MS.gene75220:CDS |
| GGACCAAATGTGAAACTGCT+CGG | 0.603872 | 1.4:+25064914 | MS.gene75220:CDS |
| CAAACTGTTGTAATCAGCAA+TGG | 0.608903 | 1.4:-25062857 | None:intergenic |
| ACTTGAAGCTAGAAATGCCA+TGG | 0.609318 | 1.4:+25064215 | MS.gene75220:CDS |
| ACATTGTTGTCATGTGAGCA+TGG | 0.611775 | 1.4:-25062657 | None:intergenic |
| GTGTCAGCTTATAGCCAACA+AGG | 0.616261 | 1.4:+25061769 | MS.gene75220:CDS |
| TGTTCAAGCCATCAAAGACA+AGG | 0.620643 | 1.4:-25063616 | None:intergenic |
| TTGCTTAGTAGAACCCAACC+TGG | 0.620916 | 1.4:-25064890 | None:intergenic |
| GAAGCTCCTCCTGCTGAGAG+TGG | 0.621719 | 1.4:+25065205 | MS.gene75220:CDS |
| ACATTCATCTTCATATATGG+AGG | 0.630288 | 1.4:+25064629 | MS.gene75220:CDS |
| TAGGATCAAGAATATCAGAA+GGG | 0.639927 | 1.4:-25065093 | None:intergenic |
| CATCGTACCTTTCACCGGTG+TGG | 0.641644 | 1.4:-25061858 | None:intergenic |
| GTTCAAGCCATCAAAGACAA+GGG | 0.644512 | 1.4:-25063615 | None:intergenic |
| GTAAGTGACTCATCATCTGT+GGG | 0.646861 | 1.4:-25064406 | None:intergenic |
| CGTTCTCGTGAGTATGACCA+TGG | 0.648414 | 1.4:-25065180 | None:intergenic |
| GGTTGGGTTCTACTAAGCAA+AGG | 0.652919 | 1.4:+25064893 | MS.gene75220:CDS |
| AAGTACTCAACCACATACCA+TGG | 0.655414 | 1.4:-25064232 | None:intergenic |
| CACCGGTGAAAGGTACGATG+TGG | 0.656165 | 1.4:+25061861 | MS.gene75220:CDS |
| CACCTAGTTCAAACACCAAG+TGG | 0.658165 | 1.4:+25062769 | MS.gene75220:CDS |
| AAACCACCACTCTCAGCAGG+AGG | 0.667205 | 1.4:-25065211 | None:intergenic |
| TGGTTCACAATCCTACCTAG+AGG | 0.675173 | 1.4:-25064331 | None:intergenic |
| GAATGTGAATCAGATTAAAG+GGG | 0.681348 | 1.4:+25064604 | MS.gene75220:intron |
| TACCTAACTCATGTCCACAC+CGG | 0.681654 | 1.4:+25061844 | MS.gene75220:CDS |
| TCAGCTGAAATCCCATACAT+GGG | 0.682027 | 1.4:+25062690 | MS.gene75220:CDS |
| GTGAGCTAGAAGATTACTGG+AGG | 0.704760 | 1.4:+25063513 | MS.gene75220:CDS |
| TCAAATGTATGCAACTGCTG+TGG | 0.727594 | 1.4:+25064946 | MS.gene75220:CDS |
| TCTATGCCAATCCAGAAACG+AGG | 0.741708 | 1.4:-25064779 | None:intergenic |
| TCAAGCCATCAAAGACAAGG+GGG | 0.746571 | 1.4:-25063613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTAATGCATATTATT+TGG | + | chr1.4:25063412-25063431 | MS.gene75220:intron | 10.0% |
| !! | AAAATATTGTATCATTTGTT+TGG | + | chr1.4:25062023-25062042 | MS.gene75220:intron | 15.0% |
| !! | AAATTGATATAAAAATTACC+TGG | - | chr1.4:25062138-25062157 | None:intergenic | 15.0% |
| !! | AATTGATATAAAAATTACCT+GGG | - | chr1.4:25062137-25062156 | None:intergenic | 15.0% |
| !! | ATAAAATAAAATGTACATGT+TGG | - | chr1.4:25062249-25062268 | None:intergenic | 15.0% |
| !! | CATTAATTCACAATTATATT+TGG | - | chr1.4:25061999-25062018 | None:intergenic | 15.0% |
| !! | TAAAAGGAACATATTATTAT+GGG | + | chr1.4:25062496-25062515 | MS.gene75220:intron | 15.0% |
| !! | TATCATTAATAGTTATCATT+AGG | - | chr1.4:25063695-25063714 | None:intergenic | 15.0% |
| !! | TATTTAGTGACAAAATATAT+TGG | - | chr1.4:25063855-25063874 | None:intergenic | 15.0% |
| !!! | ATTAATACTATTTTTGCTAA+AGG | + | chr1.4:25064511-25064530 | MS.gene75220:intron | 15.0% |
| !!! | TTAATACTATTTTTGCTAAA+GGG | + | chr1.4:25064512-25064531 | MS.gene75220:intron | 15.0% |
| !! | AAATGATTTCACAAAGTAAA+CGG | - | chr1.4:25063925-25063944 | None:intergenic | 20.0% |
| !! | CTAAAAGGAACATATTATTA+TGG | + | chr1.4:25062495-25062514 | MS.gene75220:intron | 20.0% |
| !! | GCAAAAATGTATATGTATTT+AGG | - | chr1.4:25062336-25062355 | None:intergenic | 20.0% |
| !! | TAAAATTCAGATCATTGTAT+AGG | + | chr1.4:25062176-25062195 | MS.gene75220:intron | 20.0% |
| !! | TGCTTATATATTTATTCTAG+AGG | + | chr1.4:25062353-25062372 | MS.gene75220:intron | 20.0% |
| !! | TTATAAAGCATACAACATTA+TGG | + | chr1.4:25063898-25063917 | MS.gene75220:intron | 20.0% |
| !!! | AATGCATATGATTTTTGTTT+GGG | + | chr1.4:25064360-25064379 | MS.gene75220:CDS | 20.0% |
| !!! | CTTTATTTGCTTTTTTTAGT+GGG | + | chr1.4:25063375-25063394 | MS.gene75220:intron | 20.0% |
| !!! | TCTTTATTTGCTTTTTTTAG+TGG | + | chr1.4:25063374-25063393 | MS.gene75220:intron | 20.0% |
| ! | AAATCATATGCATTGCATTA+TGG | - | chr1.4:25064354-25064373 | None:intergenic | 25.0% |
| ! | CATTAGAATATGGAAATTTC+TGG | + | chr1.4:25062746-25062765 | MS.gene75220:CDS | 25.0% |
| ! | GCACACACATAAATTATAAT+CGG | - | chr1.4:25063484-25063503 | None:intergenic | 25.0% |
| ! | GTAATCTATGAGAAACTAAA+AGG | + | chr1.4:25062480-25062499 | MS.gene75220:intron | 25.0% |
| ! | TGAATGTGAATCAGATTAAA+GGG | + | chr1.4:25064603-25064622 | MS.gene75220:intron | 25.0% |
| ! | TTCCATTGTAAGCAAATTAA+AGG | + | chr1.4:25063289-25063308 | MS.gene75220:CDS | 25.0% |
| ! | TTGAAAATCAGTAGCAAAAT+CGG | + | chr1.4:25063817-25063836 | MS.gene75220:intron | 25.0% |
| ! | TTGCAAAATTTGTACTTACA+AGG | - | chr1.4:25064489-25064508 | None:intergenic | 25.0% |
| !! | CAATGCATATGATTTTTGTT+TGG | + | chr1.4:25064359-25064378 | MS.gene75220:CDS | 25.0% |
| !! | CTTTTCAACGAATATTTGTT+TGG | + | chr1.4:25064558-25064577 | MS.gene75220:intron | 25.0% |
| !! | GGTTAGTTAATATTCAAATG+TGG | + | chr1.4:25063646-25063665 | MS.gene75220:intron | 25.0% |
| !! | TTGTGTATTGACATATAGTA+AGG | + | chr1.4:25063196-25063215 | MS.gene75220:intron | 25.0% |
| !!! | ATGCATATGATTTTTGTTTG+GGG | + | chr1.4:25064361-25064380 | MS.gene75220:CDS | 25.0% |
| !!! | GTTTTCATGAATTTGTTTCA+GGG | + | chr1.4:25063226-25063245 | MS.gene75220:intron | 25.0% |
| !!! | TGTTTTCATGAATTTGTTTC+AGG | + | chr1.4:25063225-25063244 | MS.gene75220:intron | 25.0% |
| AAAACCTCAACAATTTCTGT+TGG | - | chr1.4:25063560-25063579 | None:intergenic | 30.0% | |
| AAGAAGATTTCAAGATCTTG+TGG | + | chr1.4:25064143-25064162 | MS.gene75220:CDS | 30.0% | |
| AATTAAAGGCTCATCTTACA+AGG | + | chr1.4:25063303-25063322 | MS.gene75220:CDS | 30.0% | |
| AATTTGTACTTACAAGGTCT+TGG | - | chr1.4:25064483-25064502 | None:intergenic | 30.0% | |
| ACATTCATCTTCATATATGG+AGG | + | chr1.4:25064629-25064648 | MS.gene75220:CDS | 30.0% | |
| AGTTACGAAAAGATATTCCA+AGG | - | chr1.4:25063083-25063102 | None:intergenic | 30.0% | |
| ATAGGATCAAGAATATCAGA+AGG | - | chr1.4:25065097-25065116 | None:intergenic | 30.0% | |
| CAGAAATATGCTTCAGTTTA+CGG | - | chr1.4:25062114-25062133 | None:intergenic | 30.0% | |
| CCAAATACATGTATACAAGT+TGG | - | chr1.4:25062303-25062322 | None:intergenic | 30.0% | |
| CCAACTTGTATACATGTATT+TGG | + | chr1.4:25062300-25062319 | MS.gene75220:intron | 30.0% | |
| GAATGTGAATCAGATTAAAG+GGG | + | chr1.4:25064604-25064623 | MS.gene75220:intron | 30.0% | |
| GACACATTCATCTTCATATA+TGG | + | chr1.4:25064626-25064645 | MS.gene75220:CDS | 30.0% | |
| GTGAATGTGAATCAGATTAA+AGG | + | chr1.4:25064602-25064621 | MS.gene75220:intron | 30.0% | |
| TAGCAATCGAGAAAATCAAA+AGG | + | chr1.4:25064684-25064703 | MS.gene75220:CDS | 30.0% | |
| TAGGATCAAGAATATCAGAA+GGG | - | chr1.4:25065096-25065115 | None:intergenic | 30.0% | |
| TCGTAAGTACTTTAATTCCT+TGG | + | chr1.4:25063063-25063082 | MS.gene75220:intron | 30.0% | |
| TTCTCATAGATTACTTCCAA+CGG | - | chr1.4:25062474-25062493 | None:intergenic | 30.0% | |
| TTGGAAAAGCTTTCAACAAA+AGG | + | chr1.4:25062919-25062938 | MS.gene75220:CDS | 30.0% | |
| TTTGAATCAGGACAGTAAAT+AGG | - | chr1.4:25065115-25065134 | None:intergenic | 30.0% | |
| ! | AAATTCAGCTTTGTGAAGTA+GGG | - | chr1.4:25064191-25064210 | None:intergenic | 30.0% |
| ! | AACCATCTTGATCTTCTTTT+TGG | + | chr1.4:25063036-25063055 | MS.gene75220:CDS | 30.0% |
| ! | GCTGCATTTTCATTAGAATA+TGG | + | chr1.4:25062736-25062755 | MS.gene75220:CDS | 30.0% |
| !! | AGAAATTGTTGAGGTTTTGA+AGG | + | chr1.4:25063562-25063581 | MS.gene75220:CDS | 30.0% |
| !! | AGCCTTTAATTTGCTTACAA+TGG | - | chr1.4:25063294-25063313 | None:intergenic | 30.0% |
| !! | GTTTTGTTCAGATTGAGAAA+AGG | + | chr1.4:25065230-25065249 | MS.gene75220:CDS | 30.0% |
| !!! | CTTTTAAGGAGTATTATGAG+AGG | + | chr1.4:25065020-25065039 | MS.gene75220:CDS | 30.0% |
| !!! | CTTTTGATTTCATCGATTGT+TGG | - | chr1.4:25064845-25064864 | None:intergenic | 30.0% |
| !!! | TGGTTTTGATGTTGCTTTTA+AGG | + | chr1.4:25065006-25065025 | MS.gene75220:CDS | 30.0% |
| AAACTTCAAACCCATTAGCA+TGG | + | chr1.4:25061794-25061813 | MS.gene75220:CDS | 35.0% | |
| AACTCCAACAGAAATTGTTG+AGG | + | chr1.4:25063553-25063572 | MS.gene75220:CDS | 35.0% | |
| AATTTCCGCGTTAATTCAAC+AGG | + | chr1.4:25063982-25064001 | MS.gene75220:intron | 35.0% | |
| AGTCTTCCACAATGAAATTC+AGG | + | chr1.4:25063589-25063608 | MS.gene75220:CDS | 35.0% | |
| ATATGCTTCAGTTTACGGAT+AGG | - | chr1.4:25062109-25062128 | None:intergenic | 35.0% | |
| ATGAGTCACTTACTCAAAAG+TGG | + | chr1.4:25064416-25064435 | MS.gene75220:CDS | 35.0% | |
| ATTAACGCGGAAATTAGAGA+CGG | - | chr1.4:25063977-25063996 | None:intergenic | 35.0% | |
| ATTGTTAGCGACCAATATAG+CGG | - | chr1.4:25063730-25063749 | None:intergenic | 35.0% | |
| CAAACTGTTGTAATCAGCAA+TGG | - | chr1.4:25062860-25062879 | None:intergenic | 35.0% | |
| GAAGAACCAAGAGAACTAAA+AGG | + | chr1.4:25064112-25064131 | MS.gene75220:CDS | 35.0% | |
| GTTGTGAGAAATGTATACCT+TGG | - | chr1.4:25061953-25061972 | None:intergenic | 35.0% | |
| TATCATCACTCCATGCTAAT+GGG | - | chr1.4:25061807-25061826 | None:intergenic | 35.0% | |
| TATCATTTGTTTGGCAGACT+GGG | + | chr1.4:25062032-25062051 | MS.gene75220:intron | 35.0% | |
| TCTAACCAAGACTTGAATCT+CGG | + | chr1.4:25062398-25062417 | MS.gene75220:intron | 35.0% | |
| TGTTGAGTGTATTACTGAGT+TGG | + | chr1.4:25062900-25062919 | MS.gene75220:CDS | 35.0% | |
| TTATCATCACTCCATGCTAA+TGG | - | chr1.4:25061808-25061827 | None:intergenic | 35.0% | |
| TTCAAACTGTGGAAGAACAA+TGG | + | chr1.4:25065129-25065148 | MS.gene75220:CDS | 35.0% | |
| TTTATGTGTGTGCATATTGC+AGG | + | chr1.4:25063491-25063510 | MS.gene75220:intron | 35.0% | |
| ! | CAAAGTCATGTGTCCATTTT+GGG | - | chr1.4:25064661-25064680 | None:intergenic | 35.0% |
| ! | CAAATTCAGCTTTGTGAAGT+AGG | - | chr1.4:25064192-25064211 | None:intergenic | 35.0% |
| ! | CATGTGTTGGTATTCATTTC+AGG | + | chr1.4:25064031-25064050 | MS.gene75220:CDS | 35.0% |
| ! | CATTGCTGATTACAACAGTT+TGG | + | chr1.4:25062858-25062877 | MS.gene75220:CDS | 35.0% |
| ! | CTATTACTGCATCAGCTTTT+CGG | - | chr1.4:25064721-25064740 | None:intergenic | 35.0% |
| ! | GTAATAGAGCATTTCCACTT+CGG | + | chr1.4:25064734-25064753 | MS.gene75220:CDS | 35.0% |
| ! | TATTACTGCATCAGCTTTTC+GGG | - | chr1.4:25064720-25064739 | None:intergenic | 35.0% |
| ! | TCTTTTCGACACTTTGAACA+CGG | - | chr1.4:25062828-25062847 | None:intergenic | 35.0% |
| ! | TTTTGTCTTCTTTTCCGAAG+TGG | - | chr1.4:25064751-25064770 | None:intergenic | 35.0% |
| !! | AGATTCCTGTTGCTGTTTAT+TGG | + | chr1.4:25062986-25063005 | MS.gene75220:CDS | 35.0% |
| !! | GATTCCTGTTGCTGTTTATT+GGG | + | chr1.4:25062987-25063006 | MS.gene75220:CDS | 35.0% |
| !! | GGTTTGAAGTTTTTCCTTGT+TGG | - | chr1.4:25061786-25061805 | None:intergenic | 35.0% |
| !!! | CTGTATCCTTTTAGTTCTCT+TGG | - | chr1.4:25064121-25064140 | None:intergenic | 35.0% |
| !!! | TCAAAAGTGGAACTGGTTTT+GGG | + | chr1.4:25064429-25064448 | MS.gene75220:CDS | 35.0% |
| AAAGAATCGTTCCTCGTTTC+TGG | + | chr1.4:25064768-25064787 | MS.gene75220:CDS | 40.0% | |
| AAGTACTCAACCACATACCA+TGG | - | chr1.4:25064235-25064254 | None:intergenic | 40.0% | |
| ACATTACTTGCAAGTGAAGC+TGG | - | chr1.4:25061751-25061770 | None:intergenic | 40.0% | |
| ACATTGTTGTCATGTGAGCA+TGG | - | chr1.4:25062660-25062679 | None:intergenic | 40.0% | |
| ACTTGAAGCTAGAAATGCCA+TGG | + | chr1.4:25064215-25064234 | MS.gene75220:CDS | 40.0% | |
| AGACTTGAATCTCGGCTAAA+AGG | + | chr1.4:25062406-25062425 | MS.gene75220:intron | 40.0% | |
| AGTAAGTGACTCATCATCTG+TGG | - | chr1.4:25064410-25064429 | None:intergenic | 40.0% | |
| ATAGCCCAATAAACAGCAAC+AGG | - | chr1.4:25062994-25063013 | None:intergenic | 40.0% | |
| ATCAACCTTATTCCAGCCAA+GGG | - | chr1.4:25064262-25064281 | None:intergenic | 40.0% | |
| ATCAGCTGAAATCCCATACA+TGG | + | chr1.4:25062689-25062708 | MS.gene75220:CDS | 40.0% | |
| CACTTACTCAAAAGTGGAAC+TGG | + | chr1.4:25064422-25064441 | MS.gene75220:CDS | 40.0% | |
| CGCCAAAAAGAAGATCAAGA+TGG | - | chr1.4:25063041-25063060 | None:intergenic | 40.0% | |
| GACTGAATTGTCCGCTATAT+TGG | + | chr1.4:25063716-25063735 | MS.gene75220:intron | 40.0% | |
| GCTAACCTGTTGAATTAACG+CGG | - | chr1.4:25063990-25064009 | None:intergenic | 40.0% | |
| GGATTCAGAACAGGTAGAAT+TGG | - | chr1.4:25064313-25064332 | None:intergenic | 40.0% | |
| GTAAGTGACTCATCATCTGT+GGG | - | chr1.4:25064409-25064428 | None:intergenic | 40.0% | |
| GTATCATTTGTTTGGCAGAC+TGG | + | chr1.4:25062031-25062050 | MS.gene75220:intron | 40.0% | |
| GTGGACATGAGTTAGGTAAA+CGG | - | chr1.4:25061842-25061861 | None:intergenic | 40.0% | |
| GTTCAAGCCATCAAAGACAA+GGG | - | chr1.4:25063618-25063637 | None:intergenic | 40.0% | |
| GTTCTTCCACAGTTTGAATC+AGG | - | chr1.4:25065127-25065146 | None:intergenic | 40.0% | |
| TACTGTCCTGATTCAAACTG+TGG | + | chr1.4:25065118-25065137 | MS.gene75220:CDS | 40.0% | |
| TAGCAAAATCGGTTGCTAGA+GGG | + | chr1.4:25063828-25063847 | MS.gene75220:intron | 40.0% | |
| TATCAACCTTATTCCAGCCA+AGG | - | chr1.4:25064263-25064282 | None:intergenic | 40.0% | |
| TATGGGATTTCAGCTGATCA+AGG | - | chr1.4:25062687-25062706 | None:intergenic | 40.0% | |
| TCAAATGTATGCAACTGCTG+TGG | + | chr1.4:25064946-25064965 | MS.gene75220:CDS | 40.0% | |
| TCAGCTGAAATCCCATACAT+GGG | + | chr1.4:25062690-25062709 | MS.gene75220:CDS | 40.0% | |
| TCATAGATTACTTCCAACGG+AGG | - | chr1.4:25062471-25062490 | None:intergenic | 40.0% | |
| TGATGGCTTGAACAGACAAA+TGG | + | chr1.4:25063625-25063644 | MS.gene75220:CDS | 40.0% | |
| TGCAATAAGATTACCTCCGT+TGG | + | chr1.4:25062455-25062474 | MS.gene75220:intron | 40.0% | |
| TGCATATTAGCACAAGCAAC+AGG | - | chr1.4:25065061-25065080 | None:intergenic | 40.0% | |
| TGCTTGTGCTAATATGCAGT+TGG | + | chr1.4:25065063-25065082 | MS.gene75220:CDS | 40.0% | |
| TGTTCAAGCCATCAAAGACA+AGG | - | chr1.4:25063619-25063638 | None:intergenic | 40.0% | |
| TTCAAGCCATCAAAGACAAG+GGG | - | chr1.4:25063617-25063636 | None:intergenic | 40.0% | |
| TTTAGCCGAGATTCAAGTCT+TGG | - | chr1.4:25062406-25062425 | None:intergenic | 40.0% | |
| ! | ACAAGGAGCAGAAAGCATAT+AGG | + | chr1.4:25063320-25063339 | MS.gene75220:CDS | 40.0% |
| ! | AGGTTAGCATCGAAGTGTTT+AGG | + | chr1.4:25064002-25064021 | MS.gene75220:intron | 40.0% |
| ! | GAATTTGTTTCAGGGATGAC+AGG | + | chr1.4:25063234-25063253 | MS.gene75220:intron | 40.0% |
| ! | GCAAAGTCATGTGTCCATTT+TGG | - | chr1.4:25064662-25064681 | None:intergenic | 40.0% |
| ! | TGCTTTTCCATCCCATGTAT+GGG | - | chr1.4:25062704-25062723 | None:intergenic | 40.0% |
| ! | TTAGCATCGAAGTGTTTAGG+AGG | + | chr1.4:25064005-25064024 | MS.gene75220:CDS | 40.0% |
| !! | CTCAAAAGTGGAACTGGTTT+TGG | + | chr1.4:25064428-25064447 | MS.gene75220:CDS | 40.0% |
| !! | GAAAAAGTGCTTGAGAAAGC+TGG | + | chr1.4:25064986-25065005 | MS.gene75220:CDS | 40.0% |
| !! | GTTTTGGGCTGAAATGAAGA+AGG | + | chr1.4:25064444-25064463 | MS.gene75220:CDS | 40.0% |
| !! | TTGCTTTTCCATCCCATGTA+TGG | - | chr1.4:25062705-25062724 | None:intergenic | 40.0% |
| !!! | CTGCTGTGGATTTTGAGATA+TGG | + | chr1.4:25064960-25064979 | MS.gene75220:CDS | 40.0% |
| AGGAGGCTCATAACCAGATA+AGG | - | chr1.4:25062089-25062108 | None:intergenic | 45.0% | |
| AGGGTCCAATCATCCACAAT+TGG | - | chr1.4:25064172-25064191 | None:intergenic | 45.0% | |
| ATGGAGGAACAGACCCAAAA+TGG | + | chr1.4:25064645-25064664 | MS.gene75220:CDS | 45.0% | |
| CACCTAGTTCAAACACCAAG+TGG | + | chr1.4:25062769-25062788 | MS.gene75220:CDS | 45.0% | |
| CAGGTGAGCTAGAAGATTAC+TGG | + | chr1.4:25063510-25063529 | MS.gene75220:intron | 45.0% | |
| CATCATCTGTGGGACGAAAA+GGG | - | chr1.4:25064399-25064418 | None:intergenic | 45.0% | |
| CTACCTAGAGGATTCAGAAC+AGG | - | chr1.4:25064322-25064341 | None:intergenic | 45.0% | |
| CTGAAATCCCATACATGGGA+TGG | + | chr1.4:25062694-25062713 | MS.gene75220:CDS | 45.0% | |
| CTGTCTTCTACAAGACCTAC+AGG | - | chr1.4:25062061-25062080 | None:intergenic | 45.0% | |
| CTTACAAGGTCTTGGAGTCT+TGG | - | chr1.4:25064475-25064494 | None:intergenic | 45.0% | |
| CTTCTTCAATCCATCTACGC+TGG | + | chr1.4:25064082-25064101 | MS.gene75220:CDS | 45.0% | |
| GAAGACAGACTTCCCTTATC+TGG | + | chr1.4:25062073-25062092 | MS.gene75220:CDS | 45.0% | |
| GAGTTAGGTAAACGGTTTCG+AGG | - | chr1.4:25061834-25061853 | None:intergenic | 45.0% | |
| GATCTTGTGGATCCCAATTG+TGG | + | chr1.4:25064156-25064175 | MS.gene75220:CDS | 45.0% | |
| GCTAGAAATGCCATGGTATG+TGG | + | chr1.4:25064222-25064241 | MS.gene75220:CDS | 45.0% | |
| GGACCAAATGTGAAACTGCT+CGG | + | chr1.4:25064914-25064933 | MS.gene75220:CDS | 45.0% | |
| GGAGGCTCATAACCAGATAA+GGG | - | chr1.4:25062088-25062107 | None:intergenic | 45.0% | |
| GGATCCCAATTGTGGATGAT+TGG | + | chr1.4:25064164-25064183 | MS.gene75220:CDS | 45.0% | |
| GGGTCCAATCATCCACAATT+GGG | - | chr1.4:25064171-25064190 | None:intergenic | 45.0% | |
| GGTTGAGTACTTCTATCCCT+TGG | + | chr1.4:25064243-25064262 | MS.gene75220:CDS | 45.0% | |
| GGTTGGGTTCTACTAAGCAA+AGG | + | chr1.4:25064893-25064912 | MS.gene75220:CDS | 45.0% | |
| GTAGCAAAATCGGTTGCTAG+AGG | + | chr1.4:25063827-25063846 | MS.gene75220:intron | 45.0% | |
| GTGAGCTAGAAGATTACTGG+AGG | + | chr1.4:25063513-25063532 | MS.gene75220:CDS | 45.0% | |
| GTGTCAGCTTATAGCCAACA+AGG | + | chr1.4:25061769-25061788 | MS.gene75220:CDS | 45.0% | |
| TACCTAACTCATGTCCACAC+CGG | + | chr1.4:25061844-25061863 | MS.gene75220:CDS | 45.0% | |
| TAGATGATGAGCACACTTCC+TGG | + | chr1.4:25062628-25062647 | MS.gene75220:intron | 45.0% | |
| TCAAGCCATCAAAGACAAGG+GGG | - | chr1.4:25063616-25063635 | None:intergenic | 45.0% | |
| TCATCATCTGTGGGACGAAA+AGG | - | chr1.4:25064400-25064419 | None:intergenic | 45.0% | |
| TCTATCCCTTGGCTGGAATA+AGG | + | chr1.4:25064254-25064273 | MS.gene75220:CDS | 45.0% | |
| TCTATGCCAATCCAGAAACG+AGG | - | chr1.4:25064782-25064801 | None:intergenic | 45.0% | |
| TCTCGTCTCTTATGCTGTCT+AGG | - | chr1.4:25064057-25064076 | None:intergenic | 45.0% | |
| TGCATAGCTTCAGACAAAGC+AGG | - | chr1.4:25062964-25062983 | None:intergenic | 45.0% | |
| TGCTTCAGTTTACGGATAGG+AGG | - | chr1.4:25062106-25062125 | None:intergenic | 45.0% | |
| TGGTTCACAATCCTACCTAG+AGG | - | chr1.4:25064334-25064353 | None:intergenic | 45.0% | |
| TTCCACATCGTACCTTTCAC+CGG | - | chr1.4:25061866-25061885 | None:intergenic | 45.0% | |
| TTCTTGTAGTCCAGCGTAGA+TGG | - | chr1.4:25064095-25064114 | None:intergenic | 45.0% | |
| TTGCTTAGTAGAACCCAACC+TGG | - | chr1.4:25064893-25064912 | None:intergenic | 45.0% | |
| ! | AAGATTACTGGAGGCGTAAG+AGG | + | chr1.4:25063522-25063541 | MS.gene75220:CDS | 45.0% |
| ! | ACTGAAGCATATTTCTGCCC+AGG | + | chr1.4:25062117-25062136 | MS.gene75220:CDS | 45.0% |
| ! | AGATTACTGGAGGCGTAAGA+GGG | + | chr1.4:25063523-25063542 | MS.gene75220:CDS | 45.0% |
| ! | ATCGTTCCTCGTTTCTGGAT+TGG | + | chr1.4:25064773-25064792 | MS.gene75220:CDS | 45.0% |
| ! | CTACCTGTTCTGAATCCTCT+AGG | + | chr1.4:25064316-25064335 | MS.gene75220:CDS | 45.0% |
| ! | CTGTTCTGAATCCTCTAGGT+AGG | + | chr1.4:25064320-25064339 | MS.gene75220:CDS | 45.0% |
| ! | GTTAGCTACAAGTGTTGCCA+TGG | + | chr1.4:25065163-25065182 | MS.gene75220:CDS | 45.0% |
| ! | GTTTAGGAGGAAGCATGTGT+TGG | + | chr1.4:25064018-25064037 | MS.gene75220:CDS | 45.0% |
| !! | CACCACTTGGTGTTTGAACT+AGG | - | chr1.4:25062774-25062793 | None:intergenic | 45.0% |
| !! | AAAAATTAAAAAATTAACTT+AGG | + | chr1.4:25062546-25062565 | MS.gene75220:intron | 5.0% |
| !! | AAAATAATTAATGATATTAA+TGG | + | chr1.4:25063167-25063186 | MS.gene75220:intron | 5.0% |
| AACACTATCAGCGACTGCAC+TGG | - | chr1.4:25061926-25061945 | None:intergenic | 50.0% | |
| AATGTGAAACTGCTCGGTCG+CGG | + | chr1.4:25064920-25064939 | MS.gene75220:CDS | 50.0% | |
| ACAAAACCACCACTCTCAGC+AGG | - | chr1.4:25065217-25065236 | None:intergenic | 50.0% | |
| ACACCAAGTGGTGACACACT+TGG | + | chr1.4:25062781-25062800 | MS.gene75220:CDS | 50.0% | |
| ATCTGTGGGACGAAAAGGGA+AGG | - | chr1.4:25064395-25064414 | None:intergenic | 50.0% | |
| CAAACAAGACCAGCCAGGTT+GGG | + | chr1.4:25064877-25064896 | MS.gene75220:CDS | 50.0% | |
| CGACCGAGCAGTTTCACATT+TGG | - | chr1.4:25064920-25064939 | None:intergenic | 50.0% | |
| CGTTCTCGTGAGTATGACCA+TGG | - | chr1.4:25065183-25065202 | None:intergenic | 50.0% | |
| CTTCCAAGTGTGTCACCACT+TGG | - | chr1.4:25062787-25062806 | None:intergenic | 50.0% | |
| GAGTACTTCTATCCCTTGGC+TGG | + | chr1.4:25064247-25064266 | MS.gene75220:CDS | 50.0% | |
| GGGGGTCCTGAATTTCATTG+TGG | - | chr1.4:25063598-25063617 | None:intergenic | 50.0% | |
| TCAAACAAGACCAGCCAGGT+TGG | + | chr1.4:25064876-25064895 | MS.gene75220:CDS | 50.0% | |
| TGTCTCAAACAAGACCAGCC+AGG | + | chr1.4:25064872-25064891 | MS.gene75220:CDS | 50.0% | |
| TTAGTAGAACCCAACCTGGC+TGG | - | chr1.4:25064889-25064908 | None:intergenic | 50.0% | |
| ! | CGCTGATAGTGTTGCATCCA+AGG | + | chr1.4:25061933-25061952 | MS.gene75220:CDS | 50.0% |
| AAACCACCACTCTCAGCAGG+AGG | - | chr1.4:25065214-25065233 | None:intergenic | 55.0% | |
| ATGTGAGCATGGTGCTCACC+AGG | - | chr1.4:25062649-25062668 | None:intergenic | 55.0% | |
| CACCGGTGTGGACATGAGTT+AGG | - | chr1.4:25061849-25061868 | None:intergenic | 55.0% | |
| CAGGACCCCCTTGTCTTTGA+TGG | + | chr1.4:25063608-25063627 | MS.gene75220:CDS | 55.0% | |
| CATCGTACCTTTCACCGGTG+TGG | - | chr1.4:25061861-25061880 | None:intergenic | 55.0% | |
| CTCATGTCCACACCGGTGAA+AGG | + | chr1.4:25061851-25061870 | MS.gene75220:CDS | 55.0% | |
| ! | CACCGGTGAAAGGTACGATG+TGG | + | chr1.4:25061861-25061880 | MS.gene75220:CDS | 55.0% |
| GAAGCTCCTCCTGCTGAGAG+TGG | + | chr1.4:25065205-25065224 | MS.gene75220:CDS | 60.0% | |
| TGGCAGACTGGGACTCCTGT+AGG | + | chr1.4:25062043-25062062 | MS.gene75220:intron | 60.0% | |
| GCTCCTCCTGCTGAGAGTGG+TGG | + | chr1.4:25065208-25065227 | MS.gene75220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 25061730 | 25065258 | 25061730 | ID=MS.gene75220 |
| chr1.4 | mRNA | 25061730 | 25065258 | 25061730 | ID=MS.gene75220.t1;Parent=MS.gene75220 |
| chr1.4 | exon | 25061730 | 25061954 | 25061730 | ID=MS.gene75220.t1.exon1;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25061730 | 25061954 | 25061730 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| chr1.4 | exon | 25062049 | 25062138 | 25062049 | ID=MS.gene75220.t1.exon2;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25062049 | 25062138 | 25062049 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| chr1.4 | exon | 25062631 | 25063064 | 25062631 | ID=MS.gene75220.t1.exon3;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25062631 | 25063064 | 25062631 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| chr1.4 | exon | 25063247 | 25063341 | 25063247 | ID=MS.gene75220.t1.exon4;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25063247 | 25063341 | 25063247 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| chr1.4 | exon | 25063513 | 25063646 | 25063513 | ID=MS.gene75220.t1.exon5;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25063513 | 25063646 | 25063513 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| chr1.4 | exon | 25064004 | 25064489 | 25064004 | ID=MS.gene75220.t1.exon6;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25064004 | 25064489 | 25064004 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| chr1.4 | exon | 25064617 | 25065258 | 25064617 | ID=MS.gene75220.t1.exon7;Parent=MS.gene75220.t1 |
| chr1.4 | CDS | 25064617 | 25065258 | 25064617 | ID=cds.MS.gene75220.t1;Parent=MS.gene75220.t1 |
| Gene Sequence |
| Protein sequence |
