Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75574.t1 | XP_003601828.1 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 2.20E-189 | 671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75574.t1 | P04796 | 90.1 | 335 | 33 | 0 | 3 | 337 | 2 | 336 | 1.0e-174 | 614.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75574.t1 | G7J2H2 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 1.6e-189 | 671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051433 | MS.gene75574 | 0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene052494 | MS.gene75574 | 0.805388 | 1.37E-49 | -1.69E-46 |
| MS.gene053097 | MS.gene75574 | 0.830242 | 3.28E-55 | -1.69E-46 |
| MS.gene058157 | MS.gene75574 | -0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene75574 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene058172 | MS.gene75574 | 0.822955 | 1.80E-53 | -1.69E-46 |
| MS.gene058174 | MS.gene75574 | 0.810459 | 1.14E-50 | -1.69E-46 |
| MS.gene059545 | MS.gene75574 | 0.812463 | 4.19E-51 | -1.69E-46 |
| MS.gene060187 | MS.gene75574 | 0.80723 | 5.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52287 | MS.gene75574 | PPI |
| MS.gene75574 | MS.gene72216 | PPI |
| MS.gene013566 | MS.gene75574 | PPI |
| MS.gene06894 | MS.gene75574 | PPI |
| MS.gene024334 | MS.gene75574 | PPI |
| MS.gene06683 | MS.gene75574 | PPI |
| MS.gene057128 | MS.gene75574 | PPI |
| MS.gene51927 | MS.gene75574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75574.t1 | MTR_3g085850 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| MS.gene75574.t1 | MTR_4g103920 | 90.060 | 332 | 33 | 0 | 6 | 337 | 5 | 336 | 0.0 | 621 |
| MS.gene75574.t1 | MTR_3g085850 | 99.661 | 295 | 1 | 0 | 46 | 340 | 1 | 295 | 0.0 | 600 |
| MS.gene75574.t1 | MTR_6g022630 | 86.250 | 320 | 44 | 0 | 6 | 325 | 3 | 322 | 0.0 | 577 |
| MS.gene75574.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 78 | 414 | 0.0 | 509 |
| MS.gene75574.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 19 | 355 | 0.0 | 506 |
| MS.gene75574.t1 | MTR_4g103920 | 88.973 | 263 | 29 | 0 | 6 | 268 | 5 | 267 | 5.17e-176 | 489 |
| MS.gene75574.t1 | MTR_2g065470 | 73.457 | 324 | 85 | 1 | 2 | 325 | 78 | 400 | 1.16e-175 | 493 |
| MS.gene75574.t1 | MTR_8g046560 | 76.378 | 254 | 46 | 4 | 84 | 325 | 7 | 258 | 1.75e-126 | 372 |
| MS.gene75574.t1 | MTR_3g115920 | 47.447 | 333 | 166 | 7 | 6 | 332 | 85 | 414 | 4.56e-88 | 272 |
| MS.gene75574.t1 | MTR_7g084800 | 46.687 | 332 | 171 | 5 | 4 | 332 | 67 | 395 | 1.78e-85 | 264 |
| MS.gene75574.t1 | MTR_3g115920 | 46.933 | 326 | 164 | 7 | 6 | 325 | 85 | 407 | 8.77e-85 | 262 |
| MS.gene75574.t1 | MTR_3g115920 | 49.286 | 280 | 137 | 4 | 63 | 338 | 8 | 286 | 1.42e-77 | 240 |
| MS.gene75574.t1 | MTR_8g464820 | 83.108 | 148 | 16 | 2 | 180 | 327 | 1 | 139 | 7.70e-77 | 240 |
| MS.gene75574.t1 | MTR_1680s0010 | 45.000 | 140 | 72 | 2 | 180 | 315 | 1 | 139 | 3.43e-30 | 119 |
| MS.gene75574.t1 | MTR_2g078600 | 80.952 | 63 | 12 | 0 | 220 | 282 | 84 | 146 | 9.79e-26 | 100 |
| MS.gene75574.t1 | MTR_0776s0010 | 37.500 | 128 | 74 | 3 | 4 | 128 | 1786 | 1910 | 5.26e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75574.t1 | AT1G13440 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene75574.t1 | AT3G04120 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene75574.t1 | AT1G13440 | 82.090 | 335 | 32 | 1 | 3 | 337 | 2 | 308 | 0.0 | 556 |
| MS.gene75574.t1 | AT1G79530 | 72.271 | 339 | 93 | 1 | 2 | 340 | 82 | 419 | 0.0 | 511 |
| MS.gene75574.t1 | AT1G16300 | 71.893 | 338 | 94 | 1 | 3 | 340 | 81 | 417 | 1.47e-180 | 506 |
| MS.gene75574.t1 | AT1G42970 | 47.493 | 339 | 169 | 7 | 6 | 338 | 81 | 416 | 9.08e-95 | 289 |
| MS.gene75574.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene75574.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene75574.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 61 | 390 | 7.45e-90 | 275 |
| MS.gene75574.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 103 | 432 | 1.69e-89 | 275 |
| MS.gene75574.t1 | AT3G26650 | 46.246 | 333 | 173 | 5 | 3 | 332 | 58 | 387 | 2.23e-86 | 266 |
| MS.gene75574.t1 | AT1G12900 | 49.814 | 269 | 132 | 3 | 66 | 332 | 41 | 308 | 8.88e-74 | 231 |
Find 84 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCAAGCTGAAGGGTATTT+TGG | 0.162108 | 3.3:-71591993 | MS.gene75574:CDS |
| CCTCTCCAGTCCTTGCTTGA+TGG | 0.259153 | 3.3:+71592424 | None:intergenic |
| ACTTTGTGAAACTCGTTTCT+TGG | 0.270714 | 3.3:-71591775 | MS.gene75574:CDS |
| GTCAATTTACCGTTCAATAC+TGG | 0.280860 | 3.3:+71592223 | None:intergenic |
| CAGGTTATTAATGACCGATT+TGG | 0.281961 | 3.3:-71592683 | MS.gene75574:CDS |
| CTTGGCAGCTCCAGTGCTGC+TGG | 0.294421 | 3.3:+71592372 | None:intergenic |
| AAAACAGGATTTGGAAGAAT+TGG | 0.309904 | 3.3:-71593806 | MS.gene75574:intron |
| GACACTAAGACCCTTCTCTT+TGG | 0.356905 | 3.3:-71593545 | MS.gene75574:CDS |
| AAACATAGGTGCATCTTTGC+TGG | 0.359553 | 3.3:+71592889 | None:intergenic |
| ATTCAAAGCAATTCCAGCTT+TGG | 0.384329 | 3.3:+71591802 | None:intergenic |
| ATGACAACGAATGGGGTTAC+AGG | 0.389525 | 3.3:-71591751 | MS.gene75574:intron |
| GTGGTATCTACTGACTTTAT+TGG | 0.395775 | 3.3:-71591953 | MS.gene75574:CDS |
| TCACCCCATGGAATCTCCTC+AGG | 0.421872 | 3.3:+71593376 | None:intergenic |
| GCCACTCAGAAGACTGTTGA+TGG | 0.424666 | 3.3:-71592448 | MS.gene75574:CDS |
| AGCAGAAATAACAACCTTCT+TGG | 0.437227 | 3.3:+71592913 | None:intergenic |
| CAAAGCTGCTGCTCACTTGA+AGG | 0.450187 | 3.3:-71593302 | MS.gene75574:intron |
| CAGTTGTTGACCTTACTGTA+AGG | 0.450759 | 3.3:-71592165 | MS.gene75574:CDS |
| AGCATCTTTGATGCCAAAGC+TGG | 0.451793 | 3.3:-71591815 | MS.gene75574:CDS |
| GATTGTCCACATTGCTTCTG+TGG | 0.453352 | 3.3:-71591604 | MS.gene75574:CDS |
| GACCGATTTGGAATCGTTGA+GGG | 0.456120 | 3.3:-71592671 | MS.gene75574:CDS |
| TTGGAAACAATGTTAAGCTC+TGG | 0.470905 | 3.3:+71592836 | None:intergenic |
| TTCTTGGTATGACAACGAAT+GGG | 0.472520 | 3.3:-71591759 | MS.gene75574:CDS |
| TCTTCTCAAGCCTTACAGTA+AGG | 0.474802 | 3.3:+71592155 | None:intergenic |
| AACATCATTCCCAGCAGCAC+TGG | 0.480002 | 3.3:-71592382 | MS.gene75574:CDS |
| GATGCACCTATGTTTGTTGT+TGG | 0.480077 | 3.3:-71592881 | MS.gene75574:CDS |
| TGGGACACGGAATGACATTC+CGG | 0.487088 | 3.3:+71592201 | None:intergenic |
| TTCAAGTATGACACTGTTCA+CGG | 0.491509 | 3.3:-71593599 | MS.gene75574:CDS |
| ATTTGGAAGAATTGGACGAT+TGG | 0.494519 | 3.3:-71593798 | MS.gene75574:CDS |
| TAGCATCTGACAAGAAGATC+AGG | 0.494730 | 3.3:-71593938 | MS.gene75574:CDS |
| GATTACGTTATTGAGTCAAC+TGG | 0.498321 | 3.3:-71593343 | MS.gene75574:CDS |
| GAGATTCCATGGGGTGAGGT+TGG | 0.499881 | 3.3:-71593370 | MS.gene75574:CDS |
| GACCCTCAACGATTCCAAAT+CGG | 0.501135 | 3.3:+71592669 | None:intergenic |
| CTGACTTTATTGGCGATAGC+AGG | 0.501827 | 3.3:-71591943 | MS.gene75574:intron |
| TTTCTTGGTATGACAACGAA+TGG | 0.505583 | 3.3:-71591760 | MS.gene75574:CDS |
| GGAATCAGAGGGCAAGCTGA+AGG | 0.509794 | 3.3:-71592002 | MS.gene75574:CDS |
| GATAAATAAACAACCTGTGA+TGG | 0.511375 | 3.3:+71592628 | None:intergenic |
| TTTCATCACTACTGATTACA+TGG | 0.515255 | 3.3:-71593720 | MS.gene75574:intron |
| CAGCAGCACTGGAGCTGCCA+AGG | 0.520669 | 3.3:-71592371 | MS.gene75574:intron |
| GGCAGCCTTGATCTGCTCAT+AGG | 0.524781 | 3.3:+71592126 | None:intergenic |
| TTGGCAGCTCCAGTGCTGCT+GGG | 0.526344 | 3.3:+71592373 | None:intergenic |
| CTTCTTTCTCACCAAAGAGA+AGG | 0.533597 | 3.3:+71593534 | None:intergenic |
| TTCTTTCTCACCAAAGAGAA+GGG | 0.538245 | 3.3:+71593535 | None:intergenic |
| CAACTGAAACATCGACAGTT+GGG | 0.540776 | 3.3:+71592182 | None:intergenic |
| ACAACTGAAACATCGACAGT+TGG | 0.547427 | 3.3:+71592181 | None:intergenic |
| GTTAGTAGTGCAACTAGCAT+TGG | 0.551894 | 3.3:+71592817 | None:intergenic |
| AACATAGGTGCATCTTTGCT+GGG | 0.553014 | 3.3:+71592890 | None:intergenic |
| ATGGTCCATCAAGCAAGGAC+TGG | 0.555599 | 3.3:-71592429 | MS.gene75574:CDS |
| CTGCCTTGCTCCCCTCGCCA+AGG | 0.563779 | 3.3:-71592795 | MS.gene75574:intron |
| ATGACACTGTTCACGGTCAG+TGG | 0.566865 | 3.3:-71593592 | MS.gene75574:CDS |
| AGCAACCTATGAGCAGATCA+AGG | 0.567372 | 3.3:-71592131 | MS.gene75574:CDS |
| AAACCTTGGCGAGGGGAGCA+AGG | 0.568255 | 3.3:+71592792 | None:intergenic |
| GGAACCCTGAGGAGATTCCA+TGG | 0.575104 | 3.3:-71593381 | MS.gene75574:CDS |
| TTAACACCAACAACAAACAT+AGG | 0.578256 | 3.3:+71592875 | None:intergenic |
| TGAGGAGATTCCATGGGGTG+AGG | 0.584999 | 3.3:-71593374 | MS.gene75574:CDS |
| TGACCGATTTGGAATCGTTG+AGG | 0.585725 | 3.3:-71592672 | MS.gene75574:CDS |
| ATTTGAAACATACAGGCTGT+AGG | 0.586694 | 3.3:-71592256 | MS.gene75574:intron |
| GAACCCTGAGGAGATTCCAT+GGG | 0.589804 | 3.3:-71593380 | MS.gene75574:CDS |
| TCAAGCAAGGACTGGAGAGG+TGG | 0.590129 | 3.3:-71592421 | MS.gene75574:CDS |
| GTATTGAACGGTAAATTGAC+CGG | 0.592350 | 3.3:-71592220 | MS.gene75574:CDS |
| ACCACAGTTCACGCCATCAC+AGG | 0.598843 | 3.3:-71592641 | MS.gene75574:intron |
| AAGATCAGGATCGGAATCAA+CGG | 0.599281 | 3.3:-71593924 | MS.gene75574:intron |
| TGATTAGGGTGGTGCCAAGA+AGG | 0.600438 | 3.3:-71592927 | MS.gene75574:intron |
| CACCCCATGGAATCTCCTCA+GGG | 0.600637 | 3.3:+71593377 | None:intergenic |
| GCTGCTGGGAATGATGTTGA+AGG | 0.601432 | 3.3:+71592387 | None:intergenic |
| TCAGCTCCAACCTCACCCCA+TGG | 0.603751 | 3.3:+71593364 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3.3:-71592867 | MS.gene75574:CDS |
| GAATCAGAGGGCAAGCTGAA+GGG | 0.606362 | 3.3:-71592001 | MS.gene75574:CDS |
| GACAATCAAATCAATAACAC+GGG | 0.607012 | 3.3:+71591620 | None:intergenic |
| AGTGTCATACTTGAACATAT+AGG | 0.610966 | 3.3:+71593607 | None:intergenic |
| ATGTAATCAGTAGTGATGAA+AGG | 0.611234 | 3.3:+71593722 | None:intergenic |
| AAACATCGACAGTTGGGACA+CGG | 0.616279 | 3.3:+71592188 | None:intergenic |
| TCTTGGTATGACAACGAATG+GGG | 0.619721 | 3.3:-71591758 | MS.gene75574:CDS |
| GGGTTACACTGAAGATGATG+TGG | 0.627513 | 3.3:-71591972 | MS.gene75574:CDS |
| TCTGACAAGAAGATCAGGAT+CGG | 0.628839 | 3.3:-71593933 | MS.gene75574:CDS |
| TGTTGATGGTCCATCAAGCA+AGG | 0.632457 | 3.3:-71592434 | MS.gene75574:CDS |
| CCATCAAGCAAGGACTGGAG+AGG | 0.655042 | 3.3:-71592424 | MS.gene75574:CDS |
| GGACAATCAAATCAATAACA+CGG | 0.656794 | 3.3:+71591619 | None:intergenic |
| AAAACCAGGGAGGAATCAGA+GGG | 0.660427 | 3.3:-71592013 | MS.gene75574:intron |
| ACCTGTGATGGCGTGAACTG+TGG | 0.667657 | 3.3:+71592640 | None:intergenic |
| AAAGTGCTTCCAGTATTGAA+CGG | 0.668457 | 3.3:-71592232 | MS.gene75574:CDS |
| ATCAAGCCACAGAAGCAATG+TGG | 0.677587 | 3.3:+71591598 | None:intergenic |
| AACCCTGAGGAGATTCCATG+GGG | 0.716862 | 3.3:-71593379 | MS.gene75574:CDS |
| ACCATCAACAGTCTTCTGAG+TGG | 0.726815 | 3.3:+71592447 | None:intergenic |
| TCTGAATAATAGGAACCCTG+AGG | 0.747270 | 3.3:-71593392 | MS.gene75574:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAATTTATGTAATT+TGG | - | chr3.3:71592682-71592701 | MS.gene75574:CDS | 10.0% |
| !! | TATCAAAATCTAATTAATTG+TGG | + | chr3.3:71592660-71592679 | None:intergenic | 15.0% |
| !!! | TGTTTGATTAATTTTGTAAT+CGG | + | chr3.3:71591961-71591980 | None:intergenic | 15.0% |
| !!! | TTTTAAATTATTAGCTTCAT+TGG | - | chr3.3:71592910-71592929 | MS.gene75574:CDS | 15.0% |
| !! | AAATTTGTCAAATTATCACA+TGG | - | chr3.3:71593310-71593329 | MS.gene75574:CDS | 20.0% |
| !! | AATTAATTACAACATCCAAA+AGG | + | chr3.3:71592193-71592212 | None:intergenic | 20.0% |
| !! | ATTAATTACAACATCCAAAA+GGG | + | chr3.3:71592192-71592211 | None:intergenic | 20.0% |
| !! | TAAACGAGAAATAGATTAAA+CGG | + | chr3.3:71591656-71591675 | None:intergenic | 20.0% |
| !!! | AACTGTTTTAACTTTAAAAC+AGG | - | chr3.3:71591821-71591840 | MS.gene75574:CDS | 20.0% |
| !!! | ATATTGAATTTGAAACATAC+AGG | - | chr3.3:71593379-71593398 | MS.gene75574:CDS | 20.0% |
| !!! | ATTATTTGATAGAGCATTTT+GGG | - | chr3.3:71592395-71592414 | MS.gene75574:CDS | 20.0% |
| !!! | TAATTTATGATCTGTGATTT+TGG | - | chr3.3:71592151-71592170 | MS.gene75574:CDS | 20.0% |
| !!! | TATTATTTGATAGAGCATTT+TGG | - | chr3.3:71592394-71592413 | MS.gene75574:CDS | 20.0% |
| !!! | TTTAACTTTAAAACAGGATT+TGG | - | chr3.3:71591827-71591846 | MS.gene75574:intron | 20.0% |
| !!! | TTTTGCAATTTCAACAAAAT+AGG | + | chr3.3:71593612-71593631 | None:intergenic | 20.0% |
| ! | AAGTTTAACACTTTACTTGA+TGG | + | chr3.3:71593540-71593559 | None:intergenic | 25.0% |
| ! | ATCACAATATGACATTGAAT+TGG | - | chr3.3:71593936-71593955 | MS.gene75574:CDS | 25.0% |
| ! | CAACAAAATAGGTTTATGTT+AGG | + | chr3.3:71593601-71593620 | None:intergenic | 25.0% |
| ! | GGAGGAAAAAATTATTCAAT+TGG | + | chr3.3:71593580-71593599 | None:intergenic | 25.0% |
| ! | TATTAATCTTTACTCTTTGC+AGG | - | chr3.3:71592940-71592959 | MS.gene75574:intron | 25.0% |
| ! | TGATTAACTGATTGATTGTT+TGG | - | chr3.3:71593159-71593178 | MS.gene75574:intron | 25.0% |
| ! | TTAAGAGAGAAAAAGGAAAA+AGG | + | chr3.3:71591630-71591649 | None:intergenic | 25.0% |
| ! | TTAATTACAACATCCAAAAG+GGG | + | chr3.3:71592191-71592210 | None:intergenic | 25.0% |
| ! | TTATGTAATTTGGATTGTTG+TGG | - | chr3.3:71592692-71592711 | MS.gene75574:intron | 25.0% |
| !! | TTTATCATTATAGAGTACCT+TGG | + | chr3.3:71593291-71593310 | None:intergenic | 25.0% |
| !!! | TGAACTTTATTTTCATTTGC+AGG | - | chr3.3:71593801-71593820 | MS.gene75574:CDS | 25.0% |
| !!! | TTATTTGATAGAGCATTTTG+GGG | - | chr3.3:71592396-71592415 | MS.gene75574:CDS | 25.0% |
| AAAACAGGATTTGGAAGAAT+TGG | - | chr3.3:71591836-71591855 | MS.gene75574:intron | 30.0% | |
| AATGTCATATTGTGATAGCA+AGG | + | chr3.3:71593932-71593951 | None:intergenic | 30.0% | |
| ACCAATAAACATGCTACAAA+AGG | + | chr3.3:71592887-71592906 | None:intergenic | 30.0% | |
| AGTGTCATACTTGAACATAT+AGG | + | chr3.3:71592038-71592057 | None:intergenic | 30.0% | |
| ATCACAGATCATAAATTACC+TGG | + | chr3.3:71592149-71592168 | None:intergenic | 30.0% | |
| ATGTAATCAGTAGTGATGAA+AGG | + | chr3.3:71591923-71591942 | None:intergenic | 30.0% | |
| CAAAATAGGTTTATGTTAGG+AGG | + | chr3.3:71593598-71593617 | None:intergenic | 30.0% | |
| CAAATTATCACATGGTTGAA+TGG | - | chr3.3:71593318-71593337 | MS.gene75574:CDS | 30.0% | |
| CCAATAAACATGCTACAAAA+GGG | + | chr3.3:71592886-71592905 | None:intergenic | 30.0% | |
| GACAATCAAATCAATAACAC+GGG | + | chr3.3:71594025-71594044 | None:intergenic | 30.0% | |
| GATAAATAAACAACCTGTGA+TGG | + | chr3.3:71593017-71593036 | None:intergenic | 30.0% | |
| GGACAATCAAATCAATAACA+CGG | + | chr3.3:71594026-71594045 | None:intergenic | 30.0% | |
| TCTGATTGCATCTGAATAAT+AGG | - | chr3.3:71592240-71592259 | MS.gene75574:CDS | 30.0% | |
| TGTATCGAATCATTCAAACA+GGG | + | chr3.3:71592607-71592626 | None:intergenic | 30.0% | |
| TGTTGAAATTGCAAAAACCA+GGG | - | chr3.3:71593616-71593635 | MS.gene75574:intron | 30.0% | |
| TTAACACCAACAACAAACAT+AGG | + | chr3.3:71592770-71592789 | None:intergenic | 30.0% | |
| TTGTTGAAATTGCAAAAACC+AGG | - | chr3.3:71593615-71593634 | MS.gene75574:intron | 30.0% | |
| ! | AAACTGTCATGATCAGTTTT+TGG | - | chr3.3:71593753-71593772 | MS.gene75574:CDS | 30.0% |
| ! | GATGAACACTGTGTATATTT+TGG | + | chr3.3:71593966-71593985 | None:intergenic | 30.0% |
| ! | GCATTTTGAACTTAAGGTTA+AGG | - | chr3.3:71592075-71592094 | MS.gene75574:intron | 30.0% |
| ! | TTTCATCACTACTGATTACA+TGG | - | chr3.3:71591922-71591941 | MS.gene75574:intron | 30.0% |
| !! | AGGGTATTGAAAAAAAACCT+TGG | + | chr3.3:71592867-71592886 | None:intergenic | 30.0% |
| ACGGTGATTAAGAGAGAAAA+AGG | + | chr3.3:71591637-71591656 | None:intergenic | 35.0% | |
| ACTTTGTGAAACTCGTTTCT+TGG | - | chr3.3:71593867-71593886 | MS.gene75574:intron | 35.0% | |
| AGCAGAAATAACAACCTTCT+TGG | + | chr3.3:71592732-71592751 | None:intergenic | 35.0% | |
| ATTCAAAGCAATTCCAGCTT+TGG | + | chr3.3:71593843-71593862 | None:intergenic | 35.0% | |
| ATTGAAAAAAAACCTTGGCG+AGG | + | chr3.3:71592862-71592881 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTGGACGAT+TGG | - | chr3.3:71591844-71591863 | MS.gene75574:intron | 35.0% | |
| CAGGTTATTAATGACCGATT+TGG | - | chr3.3:71592959-71592978 | MS.gene75574:intron | 35.0% | |
| CTGTATCGAATCATTCAAAC+AGG | + | chr3.3:71592608-71592627 | None:intergenic | 35.0% | |
| GATTACGTTATTGAGTCAAC+TGG | - | chr3.3:71592299-71592318 | MS.gene75574:intron | 35.0% | |
| GTATTGAACGGTAAATTGAC+CGG | - | chr3.3:71593422-71593441 | MS.gene75574:intron | 35.0% | |
| GTCAATTTACCGTTCAATAC+TGG | + | chr3.3:71593422-71593441 | None:intergenic | 35.0% | |
| TTCAAGTATGACACTGTTCA+CGG | - | chr3.3:71592043-71592062 | MS.gene75574:intron | 35.0% | |
| TTCTTGGTATGACAACGAAT+GGG | - | chr3.3:71593883-71593902 | MS.gene75574:intron | 35.0% | |
| TTCTTTCTCACCAAAGAGAA+GGG | + | chr3.3:71592110-71592129 | None:intergenic | 35.0% | |
| TTGAAAAAAAACCTTGGCGA+GGG | + | chr3.3:71592861-71592880 | None:intergenic | 35.0% | |
| TTGGAAACAATGTTAAGCTC+TGG | + | chr3.3:71592809-71592828 | None:intergenic | 35.0% | |
| TTGGATTGTTGTGGTGATTA+GGG | - | chr3.3:71592701-71592720 | MS.gene75574:intron | 35.0% | |
| TTTCTTGGTATGACAACGAA+TGG | - | chr3.3:71593882-71593901 | MS.gene75574:intron | 35.0% | |
| TTTGGATTGTTGTGGTGATT+AGG | - | chr3.3:71592700-71592719 | MS.gene75574:intron | 35.0% | |
| ! | AAAGTGCTTCCAGTATTGAA+CGG | - | chr3.3:71593410-71593429 | MS.gene75574:intron | 35.0% |
| ! | ATTTGAAACATACAGGCTGT+AGG | - | chr3.3:71593386-71593405 | MS.gene75574:intron | 35.0% |
| ! | CCCTTTTGTAGCATGTTTAT+TGG | - | chr3.3:71592883-71592902 | MS.gene75574:CDS | 35.0% |
| !! | GTGGTATCTACTGACTTTAT+TGG | - | chr3.3:71593689-71593708 | MS.gene75574:intron | 35.0% |
| !!! | GAGAAAGAAGTTGCTGTTTT+CGG | - | chr3.3:71592121-71592140 | MS.gene75574:CDS | 35.0% |
| !!! | GTGGAAGCATTTTGAACTTA+AGG | - | chr3.3:71592069-71592088 | MS.gene75574:intron | 35.0% |
| AAACAACGAGATTCGAACTC+TGG | - | chr3.3:71591976-71591995 | MS.gene75574:CDS | 40.0% | |
| AAACATAGGTGCATCTTTGC+TGG | + | chr3.3:71592756-71592775 | None:intergenic | 40.0% | |
| AACATAGGTGCATCTTTGCT+GGG | + | chr3.3:71592755-71592774 | None:intergenic | 40.0% | |
| AAGATCAGGATCGGAATCAA+CGG | - | chr3.3:71591718-71591737 | MS.gene75574:intron | 40.0% | |
| ACAACTGAAACATCGACAGT+TGG | + | chr3.3:71593464-71593483 | None:intergenic | 40.0% | |
| ATTGTCTCACTCAGTAGAGT+CGG | + | chr3.3:71592439-71592458 | None:intergenic | 40.0% | |
| CAACTGAAACATCGACAGTT+GGG | + | chr3.3:71593463-71593482 | None:intergenic | 40.0% | |
| CAGTTGTTGACCTTACTGTA+AGG | - | chr3.3:71593477-71593496 | MS.gene75574:intron | 40.0% | |
| CTTCTTTCTCACCAAAGAGA+AGG | + | chr3.3:71592111-71592130 | None:intergenic | 40.0% | |
| GTTAGTAGTGCAACTAGCAT+TGG | + | chr3.3:71592828-71592847 | None:intergenic | 40.0% | |
| TAGCATCTGACAAGAAGATC+AGG | - | chr3.3:71591704-71591723 | MS.gene75574:intron | 40.0% | |
| TCTGAATAATAGGAACCCTG+AGG | - | chr3.3:71592250-71592269 | MS.gene75574:intron | 40.0% | |
| TCTGACAAGAAGATCAGGAT+CGG | - | chr3.3:71591709-71591728 | MS.gene75574:intron | 40.0% | |
| TCTTCTCAAGCCTTACAGTA+AGG | + | chr3.3:71593490-71593509 | None:intergenic | 40.0% | |
| TCTTGGTATGACAACGAATG+GGG | - | chr3.3:71593884-71593903 | MS.gene75574:intron | 40.0% | |
| TGAAAAAAAACCTTGGCGAG+GGG | + | chr3.3:71592860-71592879 | None:intergenic | 40.0% | |
| TGAAATTGCAAAAACCAGGG+AGG | - | chr3.3:71593619-71593638 | MS.gene75574:intron | 40.0% | |
| ! | AACTGGTGTTTTCACTGACA+AGG | - | chr3.3:71592316-71592335 | MS.gene75574:intron | 40.0% |
| !! | GATGCACCTATGTTTGTTGT+TGG | - | chr3.3:71592761-71592780 | MS.gene75574:intron | 40.0% |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | - | chr3.3:71592775-71592794 | MS.gene75574:intron | 40.0% |
| AAAAACCAGGGAGGAATCAG+AGG | - | chr3.3:71593628-71593647 | MS.gene75574:intron | 45.0% | |
| AAAACCAGGGAGGAATCAGA+GGG | - | chr3.3:71593629-71593648 | MS.gene75574:intron | 45.0% | |
| AAACATCGACAGTTGGGACA+CGG | + | chr3.3:71593457-71593476 | None:intergenic | 45.0% | |
| ACCATCAACAGTCTTCTGAG+TGG | + | chr3.3:71593198-71593217 | None:intergenic | 45.0% | |
| ACTCAGTAGAGTCGGATACA+TGG | + | chr3.3:71592431-71592450 | None:intergenic | 45.0% | |
| AGCAACCTATGAGCAGATCA+AGG | - | chr3.3:71593511-71593530 | MS.gene75574:intron | 45.0% | |
| AGCATCTTTGATGCCAAAGC+TGG | - | chr3.3:71593827-71593846 | MS.gene75574:intron | 45.0% | |
| ATGACAACGAATGGGGTTAC+AGG | - | chr3.3:71593891-71593910 | MS.gene75574:intron | 45.0% | |
| CTGACTTTATTGGCGATAGC+AGG | - | chr3.3:71593699-71593718 | MS.gene75574:intron | 45.0% | |
| GACACTAAGACCCTTCTCTT+TGG | - | chr3.3:71592097-71592116 | MS.gene75574:intron | 45.0% | |
| GACCCTCAACGATTCCAAAT+CGG | + | chr3.3:71592976-71592995 | None:intergenic | 45.0% | |
| GATTGTCCACATTGCTTCTG+TGG | - | chr3.3:71594038-71594057 | MS.gene75574:intron | 45.0% | |
| GATTGTTGTGGTGATTAGGG+TGG | - | chr3.3:71592704-71592723 | MS.gene75574:intron | 45.0% | |
| GGGTTACACTGAAGATGATG+TGG | - | chr3.3:71593670-71593689 | MS.gene75574:intron | 45.0% | |
| TTGGCGATAGCAGGTAATGT+TGG | - | chr3.3:71593708-71593727 | MS.gene75574:intron | 45.0% | |
| ! | TCTGAATCTCATGCCCCTTT+TGG | - | chr3.3:71592175-71592194 | MS.gene75574:CDS | 45.0% |
| !! | GACCGATTTGGAATCGTTGA+GGG | - | chr3.3:71592971-71592990 | MS.gene75574:intron | 45.0% |
| !! | TGACCGATTTGGAATCGTTG+AGG | - | chr3.3:71592970-71592989 | MS.gene75574:intron | 45.0% |
| !! | TGTTGATGGTCCATCAAGCA+AGG | - | chr3.3:71593208-71593227 | MS.gene75574:intron | 45.0% |
| !!! | AAGTTGCTGTTTTCGGAACC+AGG | - | chr3.3:71592128-71592147 | MS.gene75574:CDS | 45.0% |
| !!! | GGCAAGCTGAAGGGTATTTT+GGG | - | chr3.3:71593650-71593669 | MS.gene75574:intron | 45.0% |
| AACATCATTCCCAGCAGCAC+TGG | - | chr3.3:71593260-71593279 | MS.gene75574:intron | 50.0% | |
| AACCCTGAGGAGATTCCATG+GGG | - | chr3.3:71592263-71592282 | MS.gene75574:intron | 50.0% | |
| ATGACACTGTTCACGGTCAG+TGG | - | chr3.3:71592050-71592069 | MS.gene75574:intron | 50.0% | |
| ATGGTCCATCAAGCAAGGAC+TGG | - | chr3.3:71593213-71593232 | MS.gene75574:intron | 50.0% | |
| CAAAGCTGCTGCTCACTTGA+AGG | - | chr3.3:71592340-71592359 | MS.gene75574:intron | 50.0% | |
| GAACCCTGAGGAGATTCCAT+GGG | - | chr3.3:71592262-71592281 | MS.gene75574:intron | 50.0% | |
| GAATCAGAGGGCAAGCTGAA+GGG | - | chr3.3:71593641-71593660 | MS.gene75574:intron | 50.0% | |
| GCCACTCAGAAGACTGTTGA+TGG | - | chr3.3:71593194-71593213 | MS.gene75574:intron | 50.0% | |
| GCTGCTGGGAATGATGTTGA+AGG | + | chr3.3:71593258-71593277 | None:intergenic | 50.0% | |
| TGGGACACGGAATGACATTC+CGG | + | chr3.3:71593444-71593463 | None:intergenic | 50.0% | |
| ! | TGATTAGGGTGGTGCCAAGA+AGG | - | chr3.3:71592715-71592734 | MS.gene75574:intron | 50.0% |
| !!! | GGGCAAGCTGAAGGGTATTT+TGG | - | chr3.3:71593649-71593668 | MS.gene75574:intron | 50.0% |
| ACCACAGTTCACGCCATCAC+AGG | - | chr3.3:71593001-71593020 | MS.gene75574:intron | 55.0% | |
| CACCCCATGGAATCTCCTCA+GGG | + | chr3.3:71592268-71592287 | None:intergenic | 55.0% | |
| CCATCAAGCAAGGACTGGAG+AGG | - | chr3.3:71593218-71593237 | MS.gene75574:intron | 55.0% | |
| CCTCTCCAGTCCTTGCTTGA+TGG | + | chr3.3:71593221-71593240 | None:intergenic | 55.0% | |
| GAGATTCCATGGGGTGAGGT+TGG | - | chr3.3:71592272-71592291 | MS.gene75574:intron | 55.0% | |
| GGAACCCTGAGGAGATTCCA+TGG | - | chr3.3:71592261-71592280 | MS.gene75574:intron | 55.0% | |
| GGAATCAGAGGGCAAGCTGA+AGG | - | chr3.3:71593640-71593659 | MS.gene75574:intron | 55.0% | |
| GGCAGCCTTGATCTGCTCAT+AGG | + | chr3.3:71593519-71593538 | None:intergenic | 55.0% | |
| TCAAGCAAGGACTGGAGAGG+TGG | - | chr3.3:71593221-71593240 | MS.gene75574:intron | 55.0% | |
| TCACCCCATGGAATCTCCTC+AGG | + | chr3.3:71592269-71592288 | None:intergenic | 55.0% | |
| TGAGGAGATTCCATGGGGTG+AGG | - | chr3.3:71592268-71592287 | MS.gene75574:intron | 55.0% | |
| ! | ACCTGTGATGGCGTGAACTG+TGG | + | chr3.3:71593005-71593024 | None:intergenic | 55.0% |
| AAACCTTGGCGAGGGGAGCA+AGG | + | chr3.3:71592853-71592872 | None:intergenic | 60.0% | |
| CTTGCCCTCTGATTCCTCCC+TGG | + | chr3.3:71593636-71593655 | None:intergenic | 60.0% | |
| TCAGCTCCAACCTCACCCCA+TGG | + | chr3.3:71592281-71592300 | None:intergenic | 60.0% | |
| ! | TTGGCAGCTCCAGTGCTGCT+GGG | + | chr3.3:71593272-71593291 | None:intergenic | 60.0% |
| CTTGGCAGCTCCAGTGCTGC+TGG | + | chr3.3:71593273-71593292 | None:intergenic | 65.0% | |
| ! | CAGCAGCACTGGAGCTGCCA+AGG | - | chr3.3:71593271-71593290 | MS.gene75574:intron | 65.0% |
| CTGCCTTGCTCCCCTCGCCA+AGG | - | chr3.3:71592847-71592866 | MS.gene75574:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71591599 | 71594065 | 71591599 | ID=MS.gene75574 |
| chr3.3 | mRNA | 71591599 | 71594065 | 71591599 | ID=MS.gene75574.t1;Parent=MS.gene75574 |
| chr3.3 | exon | 71594062 | 71594065 | 71594062 | ID=MS.gene75574.t1.exon1;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71594062 | 71594065 | 71594062 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71593925 | 71593957 | 71593925 | ID=MS.gene75574.t1.exon2;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71593925 | 71593957 | 71593925 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71593721 | 71593821 | 71593721 | ID=MS.gene75574.t1.exon3;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71593721 | 71593821 | 71593721 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71593515 | 71593630 | 71593515 | ID=MS.gene75574.t1.exon4;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71593515 | 71593630 | 71593515 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71593303 | 71593402 | 71593303 | ID=MS.gene75574.t1.exon5;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71593303 | 71593402 | 71593303 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71592796 | 71592942 | 71592796 | ID=MS.gene75574.t1.exon6;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71592796 | 71592942 | 71592796 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71592642 | 71592702 | 71592642 | ID=MS.gene75574.t1.exon7;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71592642 | 71592702 | 71592642 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71592372 | 71592469 | 71592372 | ID=MS.gene75574.t1.exon8;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71592372 | 71592469 | 71592372 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71592121 | 71592263 | 71592121 | ID=MS.gene75574.t1.exon9;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71592121 | 71592263 | 71592121 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71591944 | 71592027 | 71591944 | ID=MS.gene75574.t1.exon10;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71591944 | 71592027 | 71591944 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71591752 | 71591841 | 71591752 | ID=MS.gene75574.t1.exon11;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71591752 | 71591841 | 71591752 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| chr3.3 | exon | 71591599 | 71591644 | 71591599 | ID=MS.gene75574.t1.exon12;Parent=MS.gene75574.t1 |
| chr3.3 | CDS | 71591599 | 71591644 | 71591599 | ID=cds.MS.gene75574.t1;Parent=MS.gene75574.t1 |
| Gene Sequence |
| Protein sequence |
