Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058170.t1 | ADB44209.1 | 97.5 | 157 | 4 | 0 | 1 | 157 | 1 | 157 | 9.60E-79 | 302.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058170.t1 | Q06931 | 86.0 | 157 | 22 | 0 | 1 | 157 | 1 | 157 | 1.7e-71 | 270.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058170.t1 | D2Y175 | 97.5 | 157 | 4 | 0 | 1 | 157 | 1 | 157 | 6.9e-79 | 302.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene058170 | 0.82346 | 1.37E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene058170 | 0.81086 | 9.34E-51 | -1.69E-46 |
| MS.gene055158 | MS.gene058170 | 0.805242 | 1.47E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene058170 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene058170 | 0.830071 | 3.61E-55 | -1.69E-46 |
| MS.gene056647 | MS.gene058170 | 0.825659 | 4.16E-54 | -1.69E-46 |
| MS.gene057506 | MS.gene058170 | 0.825306 | 5.04E-54 | -1.69E-46 |
| MS.gene058157 | MS.gene058170 | -0.833618 | 4.81E-56 | -1.69E-46 |
| MS.gene058170 | MS.gene058171 | 0.847609 | 1.04E-59 | -1.69E-46 |
| MS.gene058170 | MS.gene058172 | 0.966615 | 3.71E-126 | -1.69E-46 |
| MS.gene058170 | MS.gene058173 | 0.844376 | 7.86E-59 | -1.69E-46 |
| MS.gene058170 | MS.gene058174 | 0.991775 | 1.79E-189 | -1.69E-46 |
| MS.gene058170 | MS.gene058175 | 0.842135 | 3.11E-58 | -1.69E-46 |
| MS.gene058170 | MS.gene058179 | 0.81363 | 2.32E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene058180 | 0.822651 | 2.11E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene059046 | 0.891299 | 4.51E-74 | -1.69E-46 |
| MS.gene058170 | MS.gene059944 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene060187 | 0.871691 | 5.64E-67 | -1.69E-46 |
| MS.gene058170 | MS.gene060595 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene063062 | 0.835072 | 2.08E-56 | -1.69E-46 |
| MS.gene058170 | MS.gene064148 | -0.801798 | 7.60E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene065465 | 0.827635 | 1.40E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene067034 | 0.825824 | 3.80E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene069874 | 0.812152 | 4.90E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene071843 | 0.844846 | 5.87E-59 | -1.69E-46 |
| MS.gene058170 | MS.gene071844 | 0.994355 | 1.40E-206 | -1.69E-46 |
| MS.gene058170 | MS.gene071847 | 0.81082 | 9.53E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene071849 | 0.81466 | 1.38E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene072806 | 0.80609 | 9.74E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene073118 | -0.817283 | 3.57E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene07329 | -0.811356 | 7.29E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene07741 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene09022 | 0.832612 | 8.56E-56 | -1.69E-46 |
| MS.gene058170 | MS.gene20878 | -0.822977 | 1.77E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene24272 | 0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene25041 | 0.803683 | 3.10E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene26968 | 0.809285 | 2.04E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene27308 | 0.825386 | 4.82E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene27550 | 0.800059 | 1.72E-48 | -1.69E-46 |
| MS.gene058170 | MS.gene27645 | 0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene27779 | 0.805206 | 1.49E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene33522 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene34092 | -0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene35338 | -0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene38094 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene38095 | 0.817167 | 3.79E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene38097 | 0.835897 | 1.28E-56 | -1.69E-46 |
| MS.gene058170 | MS.gene38172 | 0.850858 | 1.29E-60 | -1.69E-46 |
| MS.gene058170 | MS.gene38173 | 0.851998 | 6.16E-61 | -1.69E-46 |
| MS.gene058170 | MS.gene38174 | 0.844256 | 8.46E-59 | -1.69E-46 |
| MS.gene058170 | MS.gene40664 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene42233 | 0.813983 | 1.94E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene44720 | 0.819777 | 9.72E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene44721 | 0.839712 | 1.34E-57 | -1.69E-46 |
| MS.gene058170 | MS.gene44722 | 0.839279 | 1.74E-57 | -1.69E-46 |
| MS.gene058170 | MS.gene46106 | 0.808778 | 2.62E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene46434 | 0.817541 | 3.13E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene49181 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene49885 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene49886 | 0.81661 | 5.06E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene51429 | 0.811073 | 8.40E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene55013 | 0.819297 | 1.25E-52 | -1.69E-46 |
| MS.gene058170 | MS.gene55120 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene59395 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene59396 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene60649 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene63749 | 0.851178 | 1.05E-60 | -1.69E-46 |
| MS.gene058170 | MS.gene63751 | 0.865009 | 8.06E-65 | -1.69E-46 |
| MS.gene058170 | MS.gene64686 | 0.803697 | 3.08E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene68121 | 0.808206 | 3.47E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene68625 | -0.805249 | 1.46E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene68722 | 0.820618 | 6.24E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene70420 | 0.837118 | 6.27E-57 | -1.69E-46 |
| MS.gene058170 | MS.gene71525 | 0.829554 | 4.82E-55 | -1.69E-46 |
| MS.gene058170 | MS.gene73493 | -0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene058170 | MS.gene75574 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene76539 | 0.814851 | 1.25E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene77471 | 0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene79129 | 0.828448 | 8.94E-55 | -1.69E-46 |
| MS.gene058170 | MS.gene81957 | 0.810281 | 1.25E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene84568 | 0.801604 | 8.32E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene85154 | 0.811017 | 8.64E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene86071 | -0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene90685 | 0.831193 | 1.92E-55 | -1.69E-46 |
| MS.gene058170 | MS.gene91973 | 0.857612 | 1.45E-62 | -1.69E-46 |
| MS.gene058170 | MS.gene91976 | 0.867511 | 1.30E-65 | -1.69E-46 |
| MS.gene058170 | MS.gene91977 | 0.870108 | 1.87E-66 | -1.69E-46 |
| MS.gene058170 | MS.gene92777 | 0.810972 | 8.84E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene94628 | -0.813315 | 2.72E-51 | -1.69E-46 |
| MS.gene058170 | MS.gene95289 | -0.801049 | 1.08E-48 | -1.69E-46 |
| MS.gene058170 | MS.gene97180 | 0.836558 | 8.72E-57 | -1.69E-46 |
| MS.gene058170 | MS.gene97562 | 0.837791 | 4.22E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058170.t1 | MTR_2g035190 | 95.541 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 3.48e-106 | 300 |
| MS.gene058170.t1 | MTR_2g035320 | 94.268 | 157 | 9 | 0 | 1 | 157 | 1 | 157 | 6.44e-106 | 299 |
| MS.gene058170.t1 | MTR_2g035210 | 89.809 | 157 | 16 | 0 | 1 | 157 | 1 | 157 | 1.82e-100 | 285 |
| MS.gene058170.t1 | MTR_2g035220 | 88.535 | 157 | 18 | 0 | 1 | 157 | 1 | 157 | 8.20e-98 | 278 |
| MS.gene058170.t1 | MTR_6g033450 | 66.879 | 157 | 52 | 0 | 1 | 157 | 1 | 157 | 5.58e-70 | 208 |
| MS.gene058170.t1 | MTR_4g120970 | 66.879 | 157 | 52 | 0 | 1 | 157 | 1 | 157 | 5.58e-70 | 208 |
| MS.gene058170.t1 | MTR_2g035100 | 62.420 | 157 | 59 | 0 | 1 | 157 | 1 | 157 | 6.74e-67 | 201 |
| MS.gene058170.t1 | MTR_2g035105 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 5.57e-66 | 198 |
| MS.gene058170.t1 | MTR_2g035150 | 62.420 | 157 | 59 | 0 | 1 | 157 | 1 | 157 | 8.08e-66 | 198 |
| MS.gene058170.t1 | MTR_2g035130 | 60.510 | 157 | 62 | 0 | 1 | 157 | 1 | 157 | 1.25e-64 | 195 |
| MS.gene058170.t1 | MTR_2g035120 | 57.962 | 157 | 66 | 0 | 1 | 157 | 1 | 157 | 2.20e-61 | 186 |
| MS.gene058170.t1 | MTR_2g035320 | 88.000 | 100 | 12 | 0 | 58 | 157 | 23 | 122 | 2.80e-60 | 182 |
| MS.gene058170.t1 | MTR_2g035170 | 47.771 | 157 | 82 | 0 | 1 | 157 | 1 | 157 | 1.18e-48 | 154 |
| MS.gene058170.t1 | MTR_4g120950 | 41.615 | 161 | 87 | 5 | 1 | 157 | 1 | 158 | 1.82e-31 | 110 |
| MS.gene058170.t1 | MTR_4g120760 | 33.121 | 157 | 104 | 1 | 1 | 156 | 1 | 157 | 2.58e-29 | 105 |
| MS.gene058170.t1 | MTR_4g120760 | 33.121 | 157 | 104 | 1 | 1 | 156 | 1 | 157 | 2.58e-29 | 105 |
| MS.gene058170.t1 | MTR_2g435310 | 31.410 | 156 | 106 | 1 | 1 | 155 | 1 | 156 | 2.60e-29 | 105 |
| MS.gene058170.t1 | MTR_4g120940 | 63.014 | 73 | 27 | 0 | 85 | 157 | 47 | 119 | 1.41e-23 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAATTTGCTAGTAATT+AGG | 0.154148 | 2.2:+53716620 | None:intergenic |
| GTTTAATTTGCTAGTAATTA+GGG | 0.258519 | 2.2:+53716621 | None:intergenic |
| GGATAGCTTCTTAATAGTTC+CGG | 0.311830 | 2.2:+53717509 | None:intergenic |
| TACAGCTTAGTGGGAGGAAC+AGG | 0.324066 | 2.2:-53716836 | MS.gene058170:CDS |
| CTTGATAAGTCCAGTTCCTT+TGG | 0.329858 | 2.2:+53716670 | None:intergenic |
| TTCAACAATTTCAACACTTT+GGG | 0.350751 | 2.2:+53717545 | None:intergenic |
| CTTCAACAATTTCAACACTT+TGG | 0.364915 | 2.2:+53717544 | None:intergenic |
| TGGGCAGCAGAAATCACCTT+TGG | 0.387864 | 2.2:+53717564 | None:intergenic |
| AGATAGAGTTGCATCACCTT+TGG | 0.394288 | 2.2:+53716718 | None:intergenic |
| GATAGCTTCTTAATAGTTCC+GGG | 0.397748 | 2.2:+53717510 | None:intergenic |
| GTTGAAATTGTTGAAGGAAA+TGG | 0.402462 | 2.2:-53717537 | MS.gene058170:CDS |
| GAGACTAAGGCCAAAGGAAC+TGG | 0.415366 | 2.2:-53716680 | MS.gene058170:CDS |
| AGAGCCTTGTAGAGTTTAGC+TGG | 0.426244 | 2.2:+53717612 | None:intergenic |
| GGGCAGCAGAAATCACCTTT+GGG | 0.449440 | 2.2:+53717565 | None:intergenic |
| TGGATATAACTACAGCTTAG+TGG | 0.476164 | 2.2:-53716846 | MS.gene058170:CDS |
| AAAATTGTTGCTGGCTCTGA+TGG | 0.476544 | 2.2:-53716776 | MS.gene058170:CDS |
| GCAGTGGATGAGGCAAACTT+TGG | 0.494243 | 2.2:-53716866 | MS.gene058170:CDS |
| CAAATTAGATGCAGTGGATG+AGG | 0.499478 | 2.2:-53716876 | MS.gene058170:CDS |
| TAATTTGTGTAGCACAAAGT+TGG | 0.501990 | 2.2:+53716892 | None:intergenic |
| CAAAGTGTTGAAATTGTTGA+AGG | 0.502542 | 2.2:-53717543 | MS.gene058170:CDS |
| GGATATAACTACAGCTTAGT+GGG | 0.506709 | 2.2:-53716845 | MS.gene058170:CDS |
| ATCTGAATTACCTTCAACAA+TGG | 0.509250 | 2.2:+53717488 | None:intergenic |
| GGACTTATCAAGGCCATTGA+GGG | 0.514208 | 2.2:-53716659 | MS.gene058170:CDS |
| CAAAGGAACTGGACTTATCA+AGG | 0.516806 | 2.2:-53716669 | MS.gene058170:CDS |
| AAGAAGCTATCCATTGTTGA+AGG | 0.523757 | 2.2:-53717498 | MS.gene058170:intron |
| AGCAGTACGTGAGGAGACTA+AGG | 0.536209 | 2.2:-53716693 | MS.gene058170:CDS |
| GAGTTGCATCACCTTTGGTA+TGG | 0.537356 | 2.2:+53716723 | None:intergenic |
| TGCCACGACGTAGCCCTCAA+TGG | 0.549026 | 2.2:+53716646 | None:intergenic |
| GGCTCCAGCTAAACTCTACA+AGG | 0.556705 | 2.2:-53717616 | MS.gene058170:CDS |
| ATTGTTGCTGGCTCTGATGG+TGG | 0.570543 | 2.2:-53716773 | MS.gene058170:CDS |
| TGGACTTATCAAGGCCATTG+AGG | 0.572485 | 2.2:-53716660 | MS.gene058170:CDS |
| GTTGAAGGAAATGGAGGACC+CGG | 0.599694 | 2.2:-53717528 | MS.gene058170:CDS |
| GTAGAGTTTAGCTGGAGCCA+CGG | 0.602676 | 2.2:+53717620 | None:intergenic |
| TGCTGATGAAATCGTCCCAA+AGG | 0.606260 | 2.2:-53717580 | MS.gene058170:CDS |
| CTTAGTGGGAGGAACAGGGT+TGG | 0.609437 | 2.2:-53716831 | MS.gene058170:CDS |
| GAAATTGTTGAAGGAAATGG+AGG | 0.626795 | 2.2:-53717534 | MS.gene058170:CDS |
| GCTACACAAATTAGATGCAG+TGG | 0.633814 | 2.2:-53716882 | MS.gene058170:CDS |
| TTTCACTGAAATCTTAACAA+CGG | 0.637000 | 2.2:+53716748 | None:intergenic |
| GGCCATTGAGGGCTACGTCG+TGG | 0.646344 | 2.2:-53716648 | MS.gene058170:CDS |
| TCAGTGAAATACCATACCAA+AGG | 0.652605 | 2.2:-53716734 | MS.gene058170:CDS |
| CGTGAGGAGACTAAGGCCAA+AGG | 0.670663 | 2.2:-53716686 | MS.gene058170:CDS |
| TCTATCTGAAGCAGTACGTG+AGG | 0.676642 | 2.2:-53716702 | MS.gene058170:CDS |
| ACAGCTTAGTGGGAGGAACA+GGG | 0.680453 | 2.2:-53716835 | MS.gene058170:CDS |
| TATAACTACAGCTTAGTGGG+AGG | 0.697586 | 2.2:-53716842 | MS.gene058170:CDS |
| TGACGAACATGTCTCAACCG+TGG | 0.725590 | 2.2:-53717637 | MS.gene058170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATAAATAATTATAA+TGG | - | chr2.2:53717353-53717372 | MS.gene058170:intron | 0.0% |
| !!! | AAATAAAAGTATAACATAAA+TGG | + | chr2.2:53717157-53717176 | None:intergenic | 10.0% |
| !!! | TTTGTCAATTTTTAAATAAA+AGG | + | chr2.2:53716944-53716963 | None:intergenic | 10.0% |
| !!! | TTTTATACCAAAAAAAAAAA+AGG | - | chr2.2:53717070-53717089 | MS.gene058170:intron | 10.0% |
| !!! | TAATTTAACTTTCTTTTCTT+TGG | + | chr2.2:53717049-53717068 | None:intergenic | 15.0% |
| !!! | TTAACTTCCTTTTTTTTTTT+TGG | + | chr2.2:53717080-53717099 | None:intergenic | 15.0% |
| !! | AATAGTAATCCAATTCTATT+TGG | - | chr2.2:53717119-53717138 | MS.gene058170:intron | 20.0% |
| ! | AATAGAATCTTGAGAAATGA+AGG | - | chr2.2:53717180-53717199 | MS.gene058170:intron | 25.0% |
| ! | AGGGTTATGTCTAATAATTA+TGG | - | chr2.2:53717225-53717244 | MS.gene058170:intron | 25.0% |
| ! | ATAATTATTAGACATAACCC+TGG | + | chr2.2:53717226-53717245 | None:intergenic | 25.0% |
| ! | TATAATGGTTATATTGCAGA+TGG | - | chr2.2:53717368-53717387 | MS.gene058170:intron | 25.0% |
| ! | TTCAACAATTTCAACACTTT+GGG | + | chr2.2:53716746-53716765 | None:intergenic | 25.0% |
| ! | TTCAGATGATTATTGATACT+CGG | - | chr2.2:53717264-53717283 | MS.gene058170:intron | 25.0% |
| ! | TTTCACTGAAATCTTAACAA+CGG | + | chr2.2:53717543-53717562 | None:intergenic | 25.0% |
| !!! | CATCTGAATCATTTTTTTGA+AGG | + | chr2.2:53717252-53717271 | None:intergenic | 25.0% |
| ATCTGAATTACCTTCAACAA+TGG | + | chr2.2:53716803-53716822 | None:intergenic | 30.0% | |
| CATGACTATCCAAATAGAAT+TGG | + | chr2.2:53717131-53717150 | None:intergenic | 30.0% | |
| CTTCAACAATTTCAACACTT+TGG | + | chr2.2:53716747-53716766 | None:intergenic | 30.0% | |
| GTTGAAATTGTTGAAGGAAA+TGG | - | chr2.2:53716751-53716770 | MS.gene058170:CDS | 30.0% | |
| ! | TAATTTGTGTAGCACAAAGT+TGG | + | chr2.2:53717399-53717418 | None:intergenic | 30.0% |
| ! | TTTGAGACAAAAATTGTTGC+TGG | - | chr2.2:53717503-53717522 | MS.gene058170:CDS | 30.0% |
| !! | CAAAGTGTTGAAATTGTTGA+AGG | - | chr2.2:53716745-53716764 | MS.gene058170:CDS | 30.0% |
| AAGAAGCTATCCATTGTTGA+AGG | - | chr2.2:53716790-53716809 | MS.gene058170:CDS | 35.0% | |
| ATAATACATAAGCTCGTTCC+AGG | - | chr2.2:53717205-53717224 | MS.gene058170:intron | 35.0% | |
| GAAATTGTTGAAGGAAATGG+AGG | - | chr2.2:53716754-53716773 | MS.gene058170:CDS | 35.0% | |
| GACAAACATGATGTGACAAA+TGG | - | chr2.2:53716958-53716977 | MS.gene058170:intron | 35.0% | |
| GATAGCTTCTTAATAGTTCC+GGG | + | chr2.2:53716781-53716800 | None:intergenic | 35.0% | |
| GGATAGCTTCTTAATAGTTC+CGG | + | chr2.2:53716782-53716801 | None:intergenic | 35.0% | |
| GGATATAACTACAGCTTAGT+GGG | - | chr2.2:53717443-53717462 | MS.gene058170:intron | 35.0% | |
| TAATACATAAGCTCGTTCCA+GGG | - | chr2.2:53717206-53717225 | MS.gene058170:intron | 35.0% | |
| TCAGTGAAATACCATACCAA+AGG | - | chr2.2:53717554-53717573 | MS.gene058170:CDS | 35.0% | |
| TGGATATAACTACAGCTTAG+TGG | - | chr2.2:53717442-53717461 | MS.gene058170:intron | 35.0% | |
| ! | GTTGTACCGACAAATTTGAT+CGG | + | chr2.2:53716904-53716923 | None:intergenic | 35.0% |
| !! | CGGTCTAAAACAATTTTACG+CGG | + | chr2.2:53716877-53716896 | None:intergenic | 35.0% |
| AGATAGAGTTGCATCACCTT+TGG | + | chr2.2:53717573-53717592 | None:intergenic | 40.0% | |
| CAAAGGAACTGGACTTATCA+AGG | - | chr2.2:53717619-53717638 | MS.gene058170:CDS | 40.0% | |
| CAAATTAGATGCAGTGGATG+AGG | - | chr2.2:53717412-53717431 | MS.gene058170:intron | 40.0% | |
| CGACAAATTTGATCGGTTGT+CGG | + | chr2.2:53716897-53716916 | None:intergenic | 40.0% | |
| CGACAACCGATCAAATTTGT+CGG | - | chr2.2:53716895-53716914 | MS.gene058170:CDS | 40.0% | |
| CTTGATAAGTCCAGTTCCTT+TGG | + | chr2.2:53717621-53717640 | None:intergenic | 40.0% | |
| GCTACACAAATTAGATGCAG+TGG | - | chr2.2:53717406-53717425 | MS.gene058170:intron | 40.0% | |
| TATAACTACAGCTTAGTGGG+AGG | - | chr2.2:53717446-53717465 | MS.gene058170:intron | 40.0% | |
| !! | AAAATTGTTGCTGGCTCTGA+TGG | - | chr2.2:53717512-53717531 | MS.gene058170:CDS | 40.0% |
| GAGTTGCATCACCTTTGGTA+TGG | + | chr2.2:53717568-53717587 | None:intergenic | 45.0% | |
| GGACTTATCAAGGCCATTGA+GGG | - | chr2.2:53717629-53717648 | MS.gene058170:CDS | 45.0% | |
| TGCTGATGAAATCGTCCCAA+AGG | - | chr2.2:53716708-53716727 | MS.gene058170:CDS | 45.0% | |
| TGGACTTATCAAGGCCATTG+AGG | - | chr2.2:53717628-53717647 | MS.gene058170:CDS | 45.0% | |
| ! | AGAGCCTTGTAGAGTTTAGC+TGG | + | chr2.2:53716679-53716698 | None:intergenic | 45.0% |
| ! | TCTATCTGAAGCAGTACGTG+AGG | - | chr2.2:53717586-53717605 | MS.gene058170:CDS | 45.0% |
| ACAGCTTAGTGGGAGGAACA+GGG | - | chr2.2:53717453-53717472 | MS.gene058170:intron | 50.0% | |
| AGCAGTACGTGAGGAGACTA+AGG | - | chr2.2:53717595-53717614 | MS.gene058170:CDS | 50.0% | |
| GAGACTAAGGCCAAAGGAAC+TGG | - | chr2.2:53717608-53717627 | MS.gene058170:CDS | 50.0% | |
| GCAGTGGATGAGGCAAACTT+TGG | - | chr2.2:53717422-53717441 | MS.gene058170:intron | 50.0% | |
| GGCTCCAGCTAAACTCTACA+AGG | - | chr2.2:53716672-53716691 | MS.gene058170:CDS | 50.0% | |
| GGGCAGCAGAAATCACCTTT+GGG | + | chr2.2:53716726-53716745 | None:intergenic | 50.0% | |
| GTAGAGTTTAGCTGGAGCCA+CGG | + | chr2.2:53716671-53716690 | None:intergenic | 50.0% | |
| GTTGAAGGAAATGGAGGACC+CGG | - | chr2.2:53716760-53716779 | MS.gene058170:CDS | 50.0% | |
| TACAGCTTAGTGGGAGGAAC+AGG | - | chr2.2:53717452-53717471 | MS.gene058170:intron | 50.0% | |
| TGACGAACATGTCTCAACCG+TGG | - | chr2.2:53716651-53716670 | MS.gene058170:CDS | 50.0% | |
| TGGGCAGCAGAAATCACCTT+TGG | + | chr2.2:53716727-53716746 | None:intergenic | 50.0% | |
| !! | ATTGTTGCTGGCTCTGATGG+TGG | - | chr2.2:53717515-53717534 | MS.gene058170:CDS | 50.0% |
| CGTGAGGAGACTAAGGCCAA+AGG | - | chr2.2:53717602-53717621 | MS.gene058170:CDS | 55.0% | |
| CTTAGTGGGAGGAACAGGGT+TGG | - | chr2.2:53717457-53717476 | MS.gene058170:intron | 55.0% | |
| TGCCACGACGTAGCCCTCAA+TGG | + | chr2.2:53717645-53717664 | None:intergenic | 60.0% | |
| GGCCATTGAGGGCTACGTCG+TGG | - | chr2.2:53717640-53717659 | MS.gene058170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 53716631 | 53717679 | 53716631 | ID=MS.gene058170 |
| chr2.2 | mRNA | 53716631 | 53717679 | 53716631 | ID=MS.gene058170.t1;Parent=MS.gene058170 |
| chr2.2 | exon | 53717499 | 53717679 | 53717499 | ID=MS.gene058170.t1.exon1;Parent=MS.gene058170.t1 |
| chr2.2 | CDS | 53717499 | 53717679 | 53717499 | ID=cds.MS.gene058170.t1;Parent=MS.gene058170.t1 |
| chr2.2 | exon | 53716631 | 53716923 | 53716631 | ID=MS.gene058170.t1.exon2;Parent=MS.gene058170.t1 |
| chr2.2 | CDS | 53716631 | 53716923 | 53716631 | ID=cds.MS.gene058170.t1;Parent=MS.gene058170.t1 |
| Gene Sequence |
| Protein sequence |
