Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058174.t1 | ADB44209.1 | 97.4 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 8.90E-78 | 299.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058174.t1 | Q06931 | 86.5 | 155 | 21 | 0 | 1 | 155 | 1 | 155 | 1.5e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058174.t1 | D2Y175 | 97.4 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 6.4e-78 | 299.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene058174 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene058174 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene055158 | MS.gene058174 | 0.803439 | 3.48E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene058174 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene056313 | MS.gene058174 | 0.829723 | 4.39E-55 | -1.69E-46 |
| MS.gene056647 | MS.gene058174 | 0.821718 | 3.48E-53 | -1.69E-46 |
| MS.gene057506 | MS.gene058174 | 0.810888 | 9.22E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene058174 | -0.826645 | 2.42E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene058174 | 0.991775 | 1.79E-189 | -1.69E-46 |
| MS.gene058171 | MS.gene058174 | 0.841548 | 4.44E-58 | -1.69E-46 |
| MS.gene058172 | MS.gene058174 | 0.957489 | 2.40E-115 | -1.69E-46 |
| MS.gene058173 | MS.gene058174 | 0.837801 | 4.19E-57 | -1.69E-46 |
| MS.gene058174 | MS.gene058175 | 0.838272 | 3.17E-57 | -1.69E-46 |
| MS.gene058174 | MS.gene058179 | 0.8154 | 9.43E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene058180 | 0.827706 | 1.35E-54 | -1.69E-46 |
| MS.gene058174 | MS.gene059046 | 0.890746 | 7.46E-74 | -1.69E-46 |
| MS.gene058174 | MS.gene059944 | 0.820616 | 6.24E-53 | -1.69E-46 |
| MS.gene058174 | MS.gene060187 | 0.863964 | 1.71E-64 | -1.69E-46 |
| MS.gene058174 | MS.gene060595 | 0.801419 | 9.09E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene063062 | 0.833442 | 5.32E-56 | -1.69E-46 |
| MS.gene058174 | MS.gene063635 | 0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene065465 | 0.826693 | 2.36E-54 | -1.69E-46 |
| MS.gene058174 | MS.gene067034 | 0.829913 | 3.94E-55 | -1.69E-46 |
| MS.gene058174 | MS.gene069874 | 0.816923 | 4.31E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene071843 | 0.839992 | 1.14E-57 | -1.69E-46 |
| MS.gene058174 | MS.gene071844 | 0.98856 | 1.68E-174 | -1.69E-46 |
| MS.gene058174 | MS.gene071847 | 0.812622 | 3.86E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene071849 | 0.814799 | 1.28E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene072806 | 0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene073118 | -0.813279 | 2.77E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene07329 | -0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene09022 | 0.823529 | 1.32E-53 | -1.69E-46 |
| MS.gene058174 | MS.gene20878 | -0.810555 | 1.09E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene24272 | 0.815559 | 8.69E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene25041 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene26152 | 0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene058174 | MS.gene26968 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene27308 | 0.822206 | 2.68E-53 | -1.69E-46 |
| MS.gene058174 | MS.gene27645 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene27779 | 0.802357 | 5.83E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene33522 | 0.812386 | 4.35E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene34092 | -0.81476 | 1.31E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene35338 | -0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene38094 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene38095 | 0.822628 | 2.14E-53 | -1.69E-46 |
| MS.gene058174 | MS.gene38097 | 0.8401 | 1.07E-57 | -1.69E-46 |
| MS.gene058174 | MS.gene38172 | 0.851284 | 9.81E-61 | -1.69E-46 |
| MS.gene058174 | MS.gene38173 | 0.850745 | 1.39E-60 | -1.69E-46 |
| MS.gene058174 | MS.gene38174 | 0.840417 | 8.80E-58 | -1.69E-46 |
| MS.gene058174 | MS.gene42233 | 0.807679 | 4.49E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene44720 | 0.817612 | 3.01E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene44721 | 0.838055 | 3.61E-57 | -1.69E-46 |
| MS.gene058174 | MS.gene44722 | 0.841587 | 4.34E-58 | -1.69E-46 |
| MS.gene058174 | MS.gene46106 | 0.807495 | 4.92E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene46434 | 0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene49181 | 0.819017 | 1.45E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene49885 | 0.809471 | 1.86E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene49886 | 0.815459 | 9.14E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene51429 | 0.812158 | 4.88E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene55013 | 0.816751 | 4.70E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene55120 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene59395 | 0.819608 | 1.06E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene59396 | 0.809564 | 1.78E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene60649 | 0.812614 | 3.88E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene63749 | 0.844627 | 6.73E-59 | -1.69E-46 |
| MS.gene058174 | MS.gene63751 | 0.852179 | 5.47E-61 | -1.69E-46 |
| MS.gene058174 | MS.gene64686 | 0.805807 | 1.12E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene68121 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene68722 | 0.814378 | 1.59E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene70420 | 0.83933 | 1.69E-57 | -1.69E-46 |
| MS.gene058174 | MS.gene71525 | 0.833548 | 5.01E-56 | -1.69E-46 |
| MS.gene058174 | MS.gene75574 | 0.810459 | 1.14E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene76539 | 0.818639 | 1.76E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene77471 | 0.826959 | 2.04E-54 | -1.69E-46 |
| MS.gene058174 | MS.gene79129 | 0.832595 | 8.64E-56 | -1.69E-46 |
| MS.gene058174 | MS.gene80904 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene058174 | MS.gene81957 | 0.812271 | 4.61E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene84568 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene85154 | 0.814337 | 1.62E-51 | -1.69E-46 |
| MS.gene058174 | MS.gene90685 | 0.827939 | 1.19E-54 | -1.69E-46 |
| MS.gene058174 | MS.gene91973 | 0.856081 | 4.09E-62 | -1.69E-46 |
| MS.gene058174 | MS.gene91976 | 0.871266 | 7.79E-67 | -1.69E-46 |
| MS.gene058174 | MS.gene91977 | 0.873007 | 2.05E-67 | -1.69E-46 |
| MS.gene058174 | MS.gene92777 | 0.807929 | 3.97E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene94628 | -0.809319 | 2.01E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene94790 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene97180 | 0.834979 | 2.19E-56 | -1.69E-46 |
| MS.gene058174 | MS.gene97182 | 0.80227 | 6.08E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene97562 | 0.836189 | 1.08E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058174.t1 | MTR_2g035190 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 1.68e-105 | 299 |
| MS.gene058174.t1 | MTR_2g035320 | 94.231 | 156 | 9 | 0 | 1 | 156 | 1 | 156 | 3.38e-105 | 298 |
| MS.gene058174.t1 | MTR_2g035210 | 89.744 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 7.25e-100 | 285 |
| MS.gene058174.t1 | MTR_2g035220 | 88.462 | 156 | 18 | 0 | 1 | 156 | 1 | 156 | 5.11e-97 | 277 |
| MS.gene058174.t1 | MTR_6g033450 | 66.667 | 156 | 52 | 0 | 1 | 156 | 1 | 156 | 3.17e-69 | 207 |
| MS.gene058174.t1 | MTR_4g120970 | 66.667 | 156 | 52 | 0 | 1 | 156 | 1 | 156 | 3.17e-69 | 207 |
| MS.gene058174.t1 | MTR_2g035100 | 62.179 | 156 | 59 | 0 | 1 | 156 | 1 | 156 | 4.03e-66 | 199 |
| MS.gene058174.t1 | MTR_2g035105 | 61.538 | 156 | 60 | 0 | 1 | 156 | 1 | 156 | 3.75e-65 | 197 |
| MS.gene058174.t1 | MTR_2g035150 | 62.179 | 156 | 59 | 0 | 1 | 156 | 1 | 156 | 2.02e-64 | 195 |
| MS.gene058174.t1 | MTR_2g035130 | 60.256 | 156 | 62 | 0 | 1 | 156 | 1 | 156 | 9.36e-64 | 193 |
| MS.gene058174.t1 | MTR_2g035120 | 57.692 | 156 | 66 | 0 | 1 | 156 | 1 | 156 | 5.58e-60 | 184 |
| MS.gene058174.t1 | MTR_2g035320 | 88.776 | 98 | 11 | 0 | 59 | 156 | 24 | 121 | 2.87e-59 | 181 |
| MS.gene058174.t1 | MTR_2g035170 | 47.436 | 156 | 82 | 0 | 1 | 156 | 1 | 156 | 1.16e-47 | 152 |
| MS.gene058174.t1 | MTR_4g120950 | 41.104 | 163 | 89 | 5 | 1 | 159 | 1 | 160 | 1.19e-30 | 109 |
| MS.gene058174.t1 | MTR_4g120760 | 33.121 | 157 | 104 | 1 | 1 | 156 | 1 | 157 | 8.32e-29 | 104 |
| MS.gene058174.t1 | MTR_4g120760 | 33.121 | 157 | 104 | 1 | 1 | 156 | 1 | 157 | 8.69e-29 | 104 |
| MS.gene058174.t1 | MTR_2g435310 | 31.410 | 156 | 106 | 1 | 1 | 155 | 1 | 156 | 1.31e-28 | 104 |
| MS.gene058174.t1 | MTR_4g120940 | 62.500 | 72 | 27 | 0 | 85 | 156 | 47 | 118 | 1.73e-22 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAACATTTGCATTAATT+TGG | 0.169383 | 2.1:-57673664 | MS.gene058174:CDS |
| ATGTTTAATTTGCTAGAATT+AGG | 0.204550 | 2.1:+57673678 | None:intergenic |
| GGATAGCTTCTTAATAGTTC+CGG | 0.311830 | 2.1:+57674566 | None:intergenic |
| TACAGCTTAGTGGGAGGAAC+AGG | 0.324066 | 2.1:-57673894 | MS.gene058174:CDS |
| CTTGATAAGTCCAGTTCCTT+TGG | 0.329858 | 2.1:+57673728 | None:intergenic |
| TGTTTAATTTGCTAGAATTA+GGG | 0.341815 | 2.1:+57673679 | None:intergenic |
| TTCAACAATTTCAACACTTT+GGG | 0.350751 | 2.1:+57674602 | None:intergenic |
| CTTCAACAATTTCAACACTT+TGG | 0.364915 | 2.1:+57674601 | None:intergenic |
| TGGGCAGCAGAAATCACCTT+TGG | 0.387864 | 2.1:+57674621 | None:intergenic |
| AGATAGAGTTGCATCACCTT+TGG | 0.394288 | 2.1:+57673776 | None:intergenic |
| GATAGCTTCTTAATAGTTCC+GGG | 0.397748 | 2.1:+57674567 | None:intergenic |
| GTTGAAATTGTTGAAGGAAA+TGG | 0.402462 | 2.1:-57674594 | MS.gene058174:CDS |
| GAGACTAAGGCCAAAGGAAC+TGG | 0.415366 | 2.1:-57673738 | MS.gene058174:CDS |
| AGAGCCTTGTAGAGTTTAGC+TGG | 0.426244 | 2.1:+57674669 | None:intergenic |
| GGGCAGCAGAAATCACCTTT+GGG | 0.449440 | 2.1:+57674622 | None:intergenic |
| TGGATATAACTACAGCTTAG+TGG | 0.476164 | 2.1:-57673904 | MS.gene058174:CDS |
| AAAATTGTTGCTGGCTCTGA+TGG | 0.476544 | 2.1:-57673834 | MS.gene058174:CDS |
| GCAGTGGATGAGGCAAACTT+TGG | 0.494243 | 2.1:-57673924 | MS.gene058174:CDS |
| CAAATTAGATGCAGTGGATG+AGG | 0.499478 | 2.1:-57673934 | MS.gene058174:CDS |
| TAATTTGTGTAGCACAAAGT+TGG | 0.501990 | 2.1:+57673950 | None:intergenic |
| CAAAGTGTTGAAATTGTTGA+AGG | 0.502542 | 2.1:-57674600 | MS.gene058174:CDS |
| GGATATAACTACAGCTTAGT+GGG | 0.506709 | 2.1:-57673903 | MS.gene058174:CDS |
| ATCTGAATTACCTTCAACAA+TGG | 0.509250 | 2.1:+57674545 | None:intergenic |
| GGACTTATCAAGGCCATTGA+GGG | 0.514208 | 2.1:-57673717 | MS.gene058174:CDS |
| CAAAGGAACTGGACTTATCA+AGG | 0.516806 | 2.1:-57673727 | MS.gene058174:CDS |
| AAGAAGCTATCCATTGTTGA+AGG | 0.523757 | 2.1:-57674555 | MS.gene058174:intron |
| AGCAGTACGTGAGGAGACTA+AGG | 0.536209 | 2.1:-57673751 | MS.gene058174:CDS |
| GAGTTGCATCACCTTTGGTA+TGG | 0.537356 | 2.1:+57673781 | None:intergenic |
| TGCCACGACGTAGCCCTCAA+TGG | 0.549026 | 2.1:+57673704 | None:intergenic |
| GGCTCCAGCTAAACTCTACA+AGG | 0.556705 | 2.1:-57674673 | MS.gene058174:CDS |
| ATTGTTGCTGGCTCTGATGG+TGG | 0.570543 | 2.1:-57673831 | MS.gene058174:CDS |
| TGGACTTATCAAGGCCATTG+AGG | 0.572485 | 2.1:-57673718 | MS.gene058174:CDS |
| GTTGAAGGAAATGGAGGACC+CGG | 0.599694 | 2.1:-57674585 | MS.gene058174:CDS |
| GTAGAGTTTAGCTGGAGCCA+CGG | 0.602676 | 2.1:+57674677 | None:intergenic |
| TGCTGATGAAATCGTCCCAA+AGG | 0.606260 | 2.1:-57674637 | MS.gene058174:CDS |
| CTTAGTGGGAGGAACAGGGT+TGG | 0.609437 | 2.1:-57673889 | MS.gene058174:CDS |
| GAAATTGTTGAAGGAAATGG+AGG | 0.626795 | 2.1:-57674591 | MS.gene058174:CDS |
| GCTACACAAATTAGATGCAG+TGG | 0.633814 | 2.1:-57673940 | MS.gene058174:CDS |
| TTTCACTGAAATCTTAACAA+CGG | 0.637000 | 2.1:+57673806 | None:intergenic |
| GGCCATTGAGGGCTACGTCG+TGG | 0.646344 | 2.1:-57673706 | MS.gene058174:CDS |
| TCAGTGAAATACCATACCAA+AGG | 0.652605 | 2.1:-57673792 | MS.gene058174:CDS |
| CGTGAGGAGACTAAGGCCAA+AGG | 0.670663 | 2.1:-57673744 | MS.gene058174:CDS |
| TCTATCTGAAGCAGTACGTG+AGG | 0.676642 | 2.1:-57673760 | MS.gene058174:CDS |
| ACAGCTTAGTGGGAGGAACA+GGG | 0.680453 | 2.1:-57673893 | MS.gene058174:CDS |
| TATAACTACAGCTTAGTGGG+AGG | 0.697586 | 2.1:-57673900 | MS.gene058174:CDS |
| TGACGAACATGTCTCAACCG+TGG | 0.725590 | 2.1:-57674694 | MS.gene058174:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATAAATAATTATAA+TGG | - | chr2.1:57674362-57674381 | MS.gene058174:intron | 0.0% |
| !!! | AAATAAAAGTATAACATAAA+TGG | + | chr2.1:57674167-57674186 | None:intergenic | 10.0% |
| !!! | TTTGTCAATTTTTAAATAAA+AGG | + | chr2.1:57673954-57673973 | None:intergenic | 10.0% |
| !!! | TTTTATACCAAAAAAAAAAA+AGG | - | chr2.1:57674080-57674099 | MS.gene058174:intron | 10.0% |
| !! | ATTAAACATTTGCATTAATT+TGG | - | chr2.1:57674691-57674710 | MS.gene058174:CDS | 15.0% |
| !!! | TAATTTAACTTTCTTTTCTT+TGG | + | chr2.1:57674059-57674078 | None:intergenic | 15.0% |
| !!! | TTAACTTCCTTTTTTTTTTT+TGG | + | chr2.1:57674090-57674109 | None:intergenic | 15.0% |
| !! | AATAGTAATCCAATTCTATT+TGG | - | chr2.1:57674129-57674148 | MS.gene058174:intron | 20.0% |
| !!! | ATGTTTAATTTGCTAGAATT+AGG | + | chr2.1:57674680-57674699 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTGCTAGAATTA+GGG | + | chr2.1:57674679-57674698 | None:intergenic | 20.0% |
| ! | AATAGAATCTTGAGAAATGA+AGG | - | chr2.1:57674190-57674209 | MS.gene058174:intron | 25.0% |
| ! | AGGGTTATGTCTAATAATTA+TGG | - | chr2.1:57674234-57674253 | MS.gene058174:intron | 25.0% |
| ! | ATAATTATTAGACATAACCC+TGG | + | chr2.1:57674235-57674254 | None:intergenic | 25.0% |
| ! | TATAATGGTTATATTGCAGA+TGG | - | chr2.1:57674377-57674396 | MS.gene058174:intron | 25.0% |
| ! | TTCAACAATTTCAACACTTT+GGG | + | chr2.1:57673756-57673775 | None:intergenic | 25.0% |
| ! | TTCAGATGATTATTGATACT+CGG | - | chr2.1:57674273-57674292 | MS.gene058174:intron | 25.0% |
| ! | TTTCACTGAAATCTTAACAA+CGG | + | chr2.1:57674552-57674571 | None:intergenic | 25.0% |
| !!! | CATCTGAATCATTTTTTTGA+AGG | + | chr2.1:57674261-57674280 | None:intergenic | 25.0% |
| ATCTGAATTACCTTCAACAA+TGG | + | chr2.1:57673813-57673832 | None:intergenic | 30.0% | |
| CATGACTATCCAAATAGAAT+TGG | + | chr2.1:57674141-57674160 | None:intergenic | 30.0% | |
| CTTCAACAATTTCAACACTT+TGG | + | chr2.1:57673757-57673776 | None:intergenic | 30.0% | |
| GTTGAAATTGTTGAAGGAAA+TGG | - | chr2.1:57673761-57673780 | MS.gene058174:CDS | 30.0% | |
| ! | TAATTTGTGTAGCACAAAGT+TGG | + | chr2.1:57674408-57674427 | None:intergenic | 30.0% |
| ! | TTTGAGACAAAAATTGTTGC+TGG | - | chr2.1:57674512-57674531 | MS.gene058174:intron | 30.0% |
| !! | CAAAGTGTTGAAATTGTTGA+AGG | - | chr2.1:57673755-57673774 | MS.gene058174:CDS | 30.0% |
| AAGAAGCTATCCATTGTTGA+AGG | - | chr2.1:57673800-57673819 | MS.gene058174:CDS | 35.0% | |
| ATAATACATAGCTCGTTCCA+GGG | - | chr2.1:57674215-57674234 | MS.gene058174:intron | 35.0% | |
| GAAATTGTTGAAGGAAATGG+AGG | - | chr2.1:57673764-57673783 | MS.gene058174:CDS | 35.0% | |
| GACAAACATGATGTGACAAA+TGG | - | chr2.1:57673968-57673987 | MS.gene058174:intron | 35.0% | |
| GATAGCTTCTTAATAGTTCC+GGG | + | chr2.1:57673791-57673810 | None:intergenic | 35.0% | |
| GGATAGCTTCTTAATAGTTC+CGG | + | chr2.1:57673792-57673811 | None:intergenic | 35.0% | |
| GGATATAACTACAGCTTAGT+GGG | - | chr2.1:57674452-57674471 | MS.gene058174:intron | 35.0% | |
| TCAGTGAAATACCATACCAA+AGG | - | chr2.1:57674563-57674582 | MS.gene058174:CDS | 35.0% | |
| TGGATATAACTACAGCTTAG+TGG | - | chr2.1:57674451-57674470 | MS.gene058174:intron | 35.0% | |
| ! | GTTGTACCGACAAATTTGAT+CGG | + | chr2.1:57673914-57673933 | None:intergenic | 35.0% |
| !! | CGGTCTAAAACAATTTTACG+CGG | + | chr2.1:57673887-57673906 | None:intergenic | 35.0% |
| AGATAGAGTTGCATCACCTT+TGG | + | chr2.1:57674582-57674601 | None:intergenic | 40.0% | |
| CAAAGGAACTGGACTTATCA+AGG | - | chr2.1:57674628-57674647 | MS.gene058174:CDS | 40.0% | |
| CAAATTAGATGCAGTGGATG+AGG | - | chr2.1:57674421-57674440 | MS.gene058174:intron | 40.0% | |
| CGACAAATTTGATCGGTTGT+CGG | + | chr2.1:57673907-57673926 | None:intergenic | 40.0% | |
| CGACAACCGATCAAATTTGT+CGG | - | chr2.1:57673905-57673924 | MS.gene058174:CDS | 40.0% | |
| CTTGATAAGTCCAGTTCCTT+TGG | + | chr2.1:57674630-57674649 | None:intergenic | 40.0% | |
| GATAATACATAGCTCGTTCC+AGG | - | chr2.1:57674214-57674233 | MS.gene058174:intron | 40.0% | |
| GCTACACAAATTAGATGCAG+TGG | - | chr2.1:57674415-57674434 | MS.gene058174:intron | 40.0% | |
| TATAACTACAGCTTAGTGGG+AGG | - | chr2.1:57674455-57674474 | MS.gene058174:intron | 40.0% | |
| !! | AAAATTGTTGCTGGCTCTGA+TGG | - | chr2.1:57674521-57674540 | MS.gene058174:intron | 40.0% |
| GAGTTGCATCACCTTTGGTA+TGG | + | chr2.1:57674577-57674596 | None:intergenic | 45.0% | |
| GGACTTATCAAGGCCATTGA+GGG | - | chr2.1:57674638-57674657 | MS.gene058174:CDS | 45.0% | |
| TGCTGATGAAATCGTCCCAA+AGG | - | chr2.1:57673718-57673737 | MS.gene058174:CDS | 45.0% | |
| TGGACTTATCAAGGCCATTG+AGG | - | chr2.1:57674637-57674656 | MS.gene058174:CDS | 45.0% | |
| ! | AGAGCCTTGTAGAGTTTAGC+TGG | + | chr2.1:57673689-57673708 | None:intergenic | 45.0% |
| ! | TCTATCTGAAGCAGTACGTG+AGG | - | chr2.1:57674595-57674614 | MS.gene058174:CDS | 45.0% |
| ACAGCTTAGTGGGAGGAACA+GGG | - | chr2.1:57674462-57674481 | MS.gene058174:intron | 50.0% | |
| AGCAGTACGTGAGGAGACTA+AGG | - | chr2.1:57674604-57674623 | MS.gene058174:CDS | 50.0% | |
| GAGACTAAGGCCAAAGGAAC+TGG | - | chr2.1:57674617-57674636 | MS.gene058174:CDS | 50.0% | |
| GCAGTGGATGAGGCAAACTT+TGG | - | chr2.1:57674431-57674450 | MS.gene058174:intron | 50.0% | |
| GGCTCCAGCTAAACTCTACA+AGG | - | chr2.1:57673682-57673701 | MS.gene058174:CDS | 50.0% | |
| GGGCAGCAGAAATCACCTTT+GGG | + | chr2.1:57673736-57673755 | None:intergenic | 50.0% | |
| GTAGAGTTTAGCTGGAGCCA+CGG | + | chr2.1:57673681-57673700 | None:intergenic | 50.0% | |
| GTTGAAGGAAATGGAGGACC+CGG | - | chr2.1:57673770-57673789 | MS.gene058174:CDS | 50.0% | |
| TACAGCTTAGTGGGAGGAAC+AGG | - | chr2.1:57674461-57674480 | MS.gene058174:intron | 50.0% | |
| TGACGAACATGTCTCAACCG+TGG | - | chr2.1:57673661-57673680 | MS.gene058174:CDS | 50.0% | |
| TGGGCAGCAGAAATCACCTT+TGG | + | chr2.1:57673737-57673756 | None:intergenic | 50.0% | |
| !! | ATTGTTGCTGGCTCTGATGG+TGG | - | chr2.1:57674524-57674543 | MS.gene058174:intron | 50.0% |
| CGTGAGGAGACTAAGGCCAA+AGG | - | chr2.1:57674611-57674630 | MS.gene058174:CDS | 55.0% | |
| CTTAGTGGGAGGAACAGGGT+TGG | - | chr2.1:57674466-57674485 | MS.gene058174:intron | 55.0% | |
| TGCCACGACGTAGCCCTCAA+TGG | + | chr2.1:57674654-57674673 | None:intergenic | 60.0% | |
| GGCCATTGAGGGCTACGTCG+TGG | - | chr2.1:57674649-57674668 | MS.gene058174:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 57673641 | 57674736 | 57673641 | ID=MS.gene058174 |
| chr2.1 | mRNA | 57673641 | 57674736 | 57673641 | ID=MS.gene058174.t1;Parent=MS.gene058174 |
| chr2.1 | exon | 57674556 | 57674736 | 57674556 | ID=MS.gene058174.t1.exon1;Parent=MS.gene058174.t1 |
| chr2.1 | CDS | 57674556 | 57674736 | 57674556 | ID=cds.MS.gene058174.t1;Parent=MS.gene058174.t1 |
| chr2.1 | exon | 57673641 | 57673981 | 57673641 | ID=MS.gene058174.t1.exon2;Parent=MS.gene058174.t1 |
| chr2.1 | CDS | 57673641 | 57673981 | 57673641 | ID=cds.MS.gene058174.t1;Parent=MS.gene058174.t1 |
| Gene Sequence |
| Protein sequence |
