Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76002.t1 | RHN44535.1 | 94.3 | 1044 | 60 | 0 | 1 | 1044 | 37 | 1080 | 0.00E+00 | 1808.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76002.t1 | Q8VWF8 | 73.7 | 854 | 215 | 4 | 192 | 1044 | 176 | 1020 | 0.0e+00 | 1292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76002.t1 | A0A396H096 | 94.3 | 1044 | 60 | 0 | 1 | 1044 | 37 | 1080 | 0.0e+00 | 1808.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene76002 | 0.846825 | 1.70E-59 | -1.69E-46 |
| MS.gene049824 | MS.gene76002 | 0.846589 | 1.98E-59 | -1.69E-46 |
| MS.gene049825 | MS.gene76002 | 0.826021 | 3.41E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene76002 | 0.807831 | 4.17E-50 | -1.69E-46 |
| MS.gene04987 | MS.gene76002 | 0.832633 | 8.46E-56 | -1.69E-46 |
| MS.gene050277 | MS.gene76002 | 0.816141 | 6.44E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene76002 | 0.816101 | 6.58E-52 | -1.69E-46 |
| MS.gene050427 | MS.gene76002 | 0.804327 | 2.28E-49 | -1.69E-46 |
| MS.gene050885 | MS.gene76002 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene76002 | 0.843252 | 1.57E-58 | -1.69E-46 |
| MS.gene053230 | MS.gene76002 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene053294 | MS.gene76002 | 0.855986 | 4.36E-62 | -1.69E-46 |
| MS.gene055808 | MS.gene76002 | 0.875211 | 3.68E-68 | -1.69E-46 |
| MS.gene056091 | MS.gene76002 | 0.848753 | 5.01E-60 | -1.69E-46 |
| MS.gene056403 | MS.gene76002 | 0.837603 | 4.72E-57 | -1.69E-46 |
| MS.gene056605 | MS.gene76002 | 0.845904 | 3.03E-59 | -1.69E-46 |
| MS.gene05689 | MS.gene76002 | 0.828006 | 1.14E-54 | -1.69E-46 |
| MS.gene057079 | MS.gene76002 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene057555 | MS.gene76002 | 0.833509 | 5.12E-56 | -1.69E-46 |
| MS.gene05953 | MS.gene76002 | 0.835957 | 1.24E-56 | -1.69E-46 |
| MS.gene05954 | MS.gene76002 | 0.832451 | 9.38E-56 | -1.69E-46 |
| MS.gene059935 | MS.gene76002 | 0.826135 | 3.20E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene76002 | 0.801728 | 7.85E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene76002 | 0.842099 | 3.18E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76002.t1 | MTR_7g017440 | 97.699 | 565 | 13 | 0 | 480 | 1044 | 2 | 566 | 0.0 | 1163 |
| MS.gene76002.t1 | MTR_8g065900 | 73.588 | 708 | 181 | 3 | 339 | 1044 | 24 | 727 | 0.0 | 1092 |
| MS.gene76002.t1 | MTR_8g065960 | 54.545 | 165 | 70 | 2 | 162 | 323 | 97 | 259 | 9.19e-50 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76002.t1 | AT5G15700 | 70.223 | 853 | 245 | 3 | 192 | 1044 | 168 | 1011 | 0.0 | 1279 |
| MS.gene76002.t1 | AT5G15700 | 69.647 | 850 | 248 | 4 | 192 | 1040 | 168 | 1008 | 0.0 | 1264 |
| MS.gene76002.t1 | AT1G68990 | 65.848 | 896 | 287 | 6 | 162 | 1044 | 87 | 976 | 0.0 | 1252 |
| MS.gene76002.t1 | AT1G68990 | 65.338 | 903 | 287 | 7 | 162 | 1044 | 87 | 983 | 0.0 | 1245 |
| MS.gene76002.t1 | AT2G24120 | 65.376 | 852 | 275 | 6 | 197 | 1044 | 158 | 993 | 0.0 | 1177 |
| MS.gene76002.t1 | AT2G24120 | 63.038 | 744 | 255 | 6 | 197 | 936 | 158 | 885 | 0.0 | 979 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGCTCTAATTGCTTTCT+AGG | 0.152818 | 7.3:+80911089 | None:intergenic |
| TTTCAGTTAGTTGAGAATTT+TGG | 0.183070 | 7.3:-80917579 | MS.gene76002:CDS |
| TGACTTCATGTAAGGCAAAT+TGG | 0.205615 | 7.3:+80917041 | None:intergenic |
| AGCTCGTCATGCAAAGATTT+TGG | 0.206895 | 7.3:-80905923 | MS.gene76002:CDS |
| TGTGACCCTCTAATTCTTAA+AGG | 0.217002 | 7.3:-80915464 | MS.gene76002:CDS |
| TGTAACTTTGGGAAGGAAAT+TGG | 0.217318 | 7.3:-80917627 | MS.gene76002:CDS |
| AAGCCGCTTGGTTGAACTTT+TGG | 0.249283 | 7.3:-80915729 | MS.gene76002:CDS |
| TCAAGAGTCGTTCCCATCTT+TGG | 0.261651 | 7.3:-80903472 | MS.gene76002:CDS |
| TACATGAAGTCATTGTTTCT+TGG | 0.266912 | 7.3:-80917030 | MS.gene76002:CDS |
| TCAAGTGAGTGAACAAAATT+TGG | 0.271509 | 7.3:+80904482 | None:intergenic |
| TTCTCAATTGCATCCCTTAG+AGG | 0.271883 | 7.3:+80916997 | None:intergenic |
| TTACAACATTATGCTGCTTT+AGG | 0.281049 | 7.3:-80909460 | MS.gene76002:CDS |
| TGTCTAGGTGGATAGAAAAT+TGG | 0.287964 | 7.3:-80905688 | MS.gene76002:intron |
| CAAACCTTTACAGACTTGTT+TGG | 0.290650 | 7.3:+80917725 | None:intergenic |
| CACACCTTTGTCTTCATAAC+TGG | 0.294324 | 7.3:+80915841 | None:intergenic |
| TTGGTTGGTTTGAGCCTCTA+AGG | 0.295476 | 7.3:-80917011 | MS.gene76002:CDS |
| GGTGACCTTAACCGCCTTAC+AGG | 0.310319 | 7.3:-80905443 | MS.gene76002:CDS |
| GCTGGTGGAGGCCGACTTGC+TGG | 0.312225 | 7.3:-80910863 | MS.gene76002:CDS |
| ATCTTTGCATGACGAGCTTC+AGG | 0.313166 | 7.3:+80905928 | None:intergenic |
| TGGAGGCCGACTTGCTGGTT+TGG | 0.328226 | 7.3:-80910858 | MS.gene76002:CDS |
| CAGAGAAAAGGAAGTGGAAA+TGG | 0.334572 | 7.3:-80910596 | MS.gene76002:CDS |
| GGACGTCCTCTTGGAAAATC+TGG | 0.335188 | 7.3:-80910278 | MS.gene76002:CDS |
| GGTTAGAATACACAAGTTCT+TGG | 0.342488 | 7.3:-80916040 | MS.gene76002:CDS |
| AGAAGAGAAACTGCGTAAAA+AGG | 0.348070 | 7.3:-80915944 | MS.gene76002:CDS |
| CATCTCCTGTAAGGCGGTTA+AGG | 0.349958 | 7.3:+80905438 | None:intergenic |
| ATACTCTCGGGAATACAAAA+TGG | 0.353108 | 7.3:-80910928 | MS.gene76002:CDS |
| CAGTATCAGTTGAAGAAATA+TGG | 0.353263 | 7.3:+80903393 | None:intergenic |
| TAAAGAGTTGTTGGAGGAGA+TGG | 0.356164 | 7.3:-80917358 | MS.gene76002:CDS |
| GCAATTAGAGCCTGTATTTG+AGG | 0.363031 | 7.3:-80911081 | MS.gene76002:intron |
| ATACACTTGGCAAATCTATA+TGG | 0.364455 | 7.3:-80910239 | MS.gene76002:CDS |
| GTTCCACCGGTCAATTGGTC+AGG | 0.368874 | 7.3:-80912596 | MS.gene76002:CDS |
| GCAGATGATTCAGAGCTCTT+TGG | 0.372941 | 7.3:-80905573 | MS.gene76002:CDS |
| TAGGGGTCCATGATTCATAT+TGG | 0.379140 | 7.3:-80904158 | MS.gene76002:CDS |
| TCAGTGTTGTGGATAGGATA+TGG | 0.385606 | 7.3:-80910886 | MS.gene76002:CDS |
| AGATGTATGCCGAGGGATAT+TGG | 0.386176 | 7.3:-80910312 | MS.gene76002:CDS |
| GTGACCCTCTAATTCTTAAA+GGG | 0.389444 | 7.3:-80915463 | MS.gene76002:CDS |
| CGAAATTAACGAGTTGTTGA+AGG | 0.392287 | 7.3:-80917238 | MS.gene76002:CDS |
| GGAACAACCATAGGCATATA+AGG | 0.393554 | 7.3:+80912614 | None:intergenic |
| TCGTTAATTTCGTCATCAAC+CGG | 0.395786 | 7.3:+80917249 | None:intergenic |
| ATCTGTGAAGAAAGAGAATA+GGG | 0.398187 | 7.3:-80910565 | MS.gene76002:CDS |
| GACTTCATGTAAGGCAAATT+GGG | 0.399449 | 7.3:+80917042 | None:intergenic |
| GCTGCTGTCAATCTAGTTGC+AGG | 0.402450 | 7.3:-80908204 | MS.gene76002:CDS |
| GAGCAAGAGATGTATCGAAA+TGG | 0.408230 | 7.3:-80916973 | MS.gene76002:CDS |
| ATTGTCATAAATTACCTTGT+CGG | 0.414498 | 7.3:+80904972 | None:intergenic |
| TCAAGCCCTTTAAGAATTAG+AGG | 0.415223 | 7.3:+80915458 | None:intergenic |
| AATCTGTGAAGAAAGAGAAT+AGG | 0.415826 | 7.3:-80910566 | MS.gene76002:CDS |
| CATCCACACTTAAATCATCT+TGG | 0.420358 | 7.3:-80910338 | MS.gene76002:CDS |
| TCATGCATGCAGCTAAGAAC+TGG | 0.425311 | 7.3:+80910087 | None:intergenic |
| AGTAATTACAGCCATCTTAT+CGG | 0.433035 | 7.3:+80916906 | None:intergenic |
| TGAAGTCATTGTTTCTTGGT+TGG | 0.435566 | 7.3:-80917026 | MS.gene76002:CDS |
| TGATGAAATTAAAGAGTTGT+TGG | 0.436703 | 7.3:-80917367 | MS.gene76002:CDS |
| TTTGGCAGAGGGGAAATATA+AGG | 0.437602 | 7.3:-80917166 | MS.gene76002:CDS |
| TCTTATCTAAACAGGAAAAC+AGG | 0.437890 | 7.3:-80915509 | MS.gene76002:intron |
| TTTGCAGATGGACGTCCTCT+TGG | 0.440912 | 7.3:-80910287 | MS.gene76002:CDS |
| ACAAATGCAGGACGGATATC+AGG | 0.445370 | 7.3:+80915644 | None:intergenic |
| TTGATGGCGGGAAGTGAGAA+AGG | 0.445487 | 7.3:-80916862 | MS.gene76002:CDS |
| GAAGAGAGGAAGCAGAATGC+TGG | 0.445926 | 7.3:-80917204 | MS.gene76002:CDS |
| CAGGCTCTAATTGCTTTCTA+GGG | 0.447162 | 7.3:+80911090 | None:intergenic |
| GGTCATTCCTTATATGCCTA+TGG | 0.447250 | 7.3:-80912621 | MS.gene76002:CDS |
| TGGGTTCAAGTGGCATGGTT+TGG | 0.449115 | 7.3:-80917184 | MS.gene76002:CDS |
| GACTGCGATTGCCTGCAAAA+AGG | 0.449861 | 7.3:-80904441 | MS.gene76002:CDS |
| CTGTCTCACCTCTTGCTCAA+TGG | 0.450545 | 7.3:+80916789 | None:intergenic |
| AAATCTAAGTCTCCACGTTC+AGG | 0.450684 | 7.3:+80903435 | None:intergenic |
| TCGTCAGTTTCTAGCTCCTC+AGG | 0.450905 | 7.3:+80910624 | None:intergenic |
| GATGAAAATACCTGATGTAC+TGG | 0.452909 | 7.3:+80910011 | None:intergenic |
| TGATTCTGCTGAACAACCTA+TGG | 0.453658 | 7.3:-80910147 | MS.gene76002:CDS |
| AGATGGAGAGAGAAGATAAG+AGG | 0.456540 | 7.3:-80917341 | MS.gene76002:CDS |
| TAAGATGATGGCGTTGTTGA+TGG | 0.458511 | 7.3:-80916878 | MS.gene76002:CDS |
| AGCAAGAGATGTATCGAAAT+GGG | 0.460164 | 7.3:-80916972 | MS.gene76002:CDS |
| ACGTGGAGACTTAGATTTGA+AGG | 0.462465 | 7.3:-80903430 | MS.gene76002:CDS |
| TGGTTGTTCCACCGGTCAAT+TGG | 0.464177 | 7.3:-80912601 | MS.gene76002:CDS |
| TGATCTGATTCTGATTCTGC+TGG | 0.466017 | 7.3:+80915683 | None:intergenic |
| ATCACATATTCCAGTACATC+AGG | 0.466402 | 7.3:-80910021 | MS.gene76002:intron |
| TCAGTTGCCATCCGATAAGA+TGG | 0.470842 | 7.3:-80916917 | MS.gene76002:CDS |
| CCCCTAAAATCAAGGTTATG+TGG | 0.472003 | 7.3:+80910377 | None:intergenic |
| TCCTATGTCATGCGTACTCA+TGG | 0.476825 | 7.3:-80911146 | MS.gene76002:CDS |
| TAAGTCTCCACGTTCAGGTA+AGG | 0.476894 | 7.3:+80903440 | None:intergenic |
| TAAATTCAGACCTCAAATAC+AGG | 0.477743 | 7.3:+80911071 | None:intergenic |
| TCATAGGATGGCTCTTGCAA+TGG | 0.485225 | 7.3:-80909484 | MS.gene76002:intron |
| CTGACGATGAAGCAGAGAAA+AGG | 0.485306 | 7.3:-80910608 | MS.gene76002:CDS |
| CGTGCGTCCAATATGAATCA+TGG | 0.486009 | 7.3:+80904151 | None:intergenic |
| TGGTTGGTTTGAGCCTCTAA+GGG | 0.486956 | 7.3:-80917010 | MS.gene76002:CDS |
| TTGGAAAATCTGGTTTGCAC+TGG | 0.487172 | 7.3:-80910268 | MS.gene76002:CDS |
| GTGTGTTGGACCACTCCTCT+TGG | 0.488274 | 7.3:-80905187 | MS.gene76002:CDS |
| GCCTTACAGGAGATGTTTGA+AGG | 0.489071 | 7.3:-80905430 | MS.gene76002:CDS |
| TGAGTCCACTGAAGTCATAA+AGG | 0.489428 | 7.3:-80915968 | MS.gene76002:CDS |
| TGCTGCTTGTTATGCTGCAA+AGG | 0.490652 | 7.3:-80905550 | MS.gene76002:intron |
| AGAAACAATGACTTCATGTA+AGG | 0.491431 | 7.3:+80917033 | None:intergenic |
| GTTTCCAAACAAGTCTGTAA+AGG | 0.491895 | 7.3:-80917729 | MS.gene76002:CDS |
| TTGTTCGCAATTTGATACAA+AGG | 0.494996 | 7.3:-80917547 | MS.gene76002:CDS |
| AGGAAAACAGGCAGAAAATA+CGG | 0.499883 | 7.3:-80915497 | MS.gene76002:CDS |
| CAAGTGGCATGGTTTGGCAG+AGG | 0.500667 | 7.3:-80917178 | MS.gene76002:CDS |
| TGTTTCTTCTACTGATGTTG+AGG | 0.501090 | 7.3:-80917502 | MS.gene76002:CDS |
| TATGCCTATGGTTGTTCCAC+CGG | 0.502178 | 7.3:-80912609 | MS.gene76002:CDS |
| CTAAATGAATGCACAAATGC+AGG | 0.505958 | 7.3:+80915632 | None:intergenic |
| TGAAATTAAAGAGTTGTTGG+AGG | 0.506233 | 7.3:-80917364 | MS.gene76002:CDS |
| AAGGGTGGAAATTCCAAAGA+TGG | 0.506458 | 7.3:+80903459 | None:intergenic |
| TGTTCGCAATTTGATACAAA+GGG | 0.506503 | 7.3:-80917546 | MS.gene76002:CDS |
| TGGCACTGCTAGGGTTGTAC+AGG | 0.507605 | 7.3:-80916833 | MS.gene76002:CDS |
| TTCATTTAGAACGATGAAAG+AGG | 0.509193 | 7.3:-80915618 | MS.gene76002:CDS |
| AGGCCGACTTGCTGGTTTGG+TGG | 0.510239 | 7.3:-80910855 | MS.gene76002:CDS |
| CGTTAATTTCGTCATCAACC+GGG | 0.510497 | 7.3:+80917250 | None:intergenic |
| GATGGCAACTGAAGAAAGTA+AGG | 0.511997 | 7.3:+80916928 | None:intergenic |
| CAGTGTTGTGGATAGGATAT+GGG | 0.513617 | 7.3:-80910885 | MS.gene76002:CDS |
| TTCTTCCTTTATGACTTCAG+TGG | 0.514403 | 7.3:+80915963 | None:intergenic |
| GTGCACGAAGTATCATGAAC+TGG | 0.515680 | 7.3:-80905408 | MS.gene76002:CDS |
| GTGCAACCTTACCGCTATCA+AGG | 0.516180 | 7.3:-80905154 | MS.gene76002:CDS |
| ACCTTCAAACATCTCCTGTA+AGG | 0.517660 | 7.3:+80905429 | None:intergenic |
| GATTAGGCTCTGGATACTCT+CGG | 0.523001 | 7.3:-80910941 | MS.gene76002:intron |
| AAGGATTCGTTGGCACTGCT+AGG | 0.525342 | 7.3:-80916843 | MS.gene76002:CDS |
| AATTACTATGCATAAGATGA+TGG | 0.525392 | 7.3:-80916890 | MS.gene76002:CDS |
| CAGAAGCTTGCTGCAGTGAG+AGG | 0.526059 | 7.3:-80915901 | MS.gene76002:CDS |
| TAGCGGTAAGGTTGCACCAC+AGG | 0.526384 | 7.3:+80905160 | None:intergenic |
| ACGGTGATGACATCAGTTTA+CGG | 0.527119 | 7.3:-80905657 | MS.gene76002:CDS |
| TTTGAGAGAAAACAAGAGGT+GGG | 0.534789 | 7.3:+80917682 | None:intergenic |
| AGGATTCGTTGGCACTGCTA+GGG | 0.536168 | 7.3:-80916842 | MS.gene76002:CDS |
| TCTGTAAAGGTTTGTTACGT+CGG | 0.536865 | 7.3:-80917716 | MS.gene76002:CDS |
| GTTGATAAACTATCAAATGA+AGG | 0.537392 | 7.3:-80910209 | MS.gene76002:CDS |
| GATAGGATATGGGCTGGTGG+AGG | 0.538764 | 7.3:-80910875 | MS.gene76002:CDS |
| AACAAAATTTGGCGGAAATG+CGG | 0.541188 | 7.3:+80904493 | None:intergenic |
| GTCTTCATAACTGGTCCCCA+CGG | 0.542194 | 7.3:+80915850 | None:intergenic |
| AATCGATGCTCAGAAAGATC+CGG | 0.543189 | 7.3:-80905959 | MS.gene76002:CDS |
| AAGTCTCCACGTTCAGGTAA+GGG | 0.544056 | 7.3:+80903441 | None:intergenic |
| AAGAGAGGAAGCAGAATGCT+GGG | 0.544143 | 7.3:-80917203 | MS.gene76002:CDS |
| GGAAGTGAGAAAGGATTCGT+TGG | 0.546351 | 7.3:-80916853 | MS.gene76002:CDS |
| TGCAGTGAGAGGAATATTGA+AGG | 0.546670 | 7.3:-80915890 | MS.gene76002:CDS |
| TTTGGGAAGGAAATTGGAAG+TGG | 0.547649 | 7.3:-80917621 | MS.gene76002:CDS |
| GAAGCCAGCTGATGTTTACT+CGG | 0.548235 | 7.3:-80908178 | MS.gene76002:CDS |
| CATGCAGCTAAGAACTGGAA+TGG | 0.552093 | 7.3:+80910092 | None:intergenic |
| TGAAGATTGAGACTGAACTT+TGG | 0.553495 | 7.3:-80917125 | MS.gene76002:CDS |
| TAACAAGGTGCTCAGTGTTG+TGG | 0.553805 | 7.3:-80910897 | MS.gene76002:CDS |
| AAGTGGCATGGTTTGGCAGA+GGG | 0.555346 | 7.3:-80917177 | MS.gene76002:CDS |
| CACTCCTCTTGGACTTCCTG+TGG | 0.555604 | 7.3:-80905176 | MS.gene76002:CDS |
| TAGAAAATTGGTTAAGCAGA+CGG | 0.556508 | 7.3:-80905676 | MS.gene76002:CDS |
| AGGGGAAATATAAGGAGTTG+AGG | 0.558326 | 7.3:-80917158 | MS.gene76002:CDS |
| TCATACCCTGACCAATTGAC+CGG | 0.558437 | 7.3:+80912590 | None:intergenic |
| ATGATTTAAGTGTGGATGCA+TGG | 0.559183 | 7.3:+80910343 | None:intergenic |
| ATACCCGAGTAAACATCAGC+TGG | 0.559744 | 7.3:+80908174 | None:intergenic |
| TGCCTTCCTTGATAGCGGTA+AGG | 0.560205 | 7.3:+80905148 | None:intergenic |
| CTACTGATGTTGAGGATGAG+AGG | 0.562882 | 7.3:-80917494 | MS.gene76002:CDS |
| GGAAATTGGAAGTGGGCGTG+TGG | 0.563263 | 7.3:-80917613 | MS.gene76002:CDS |
| ATGCACGGCCCCTAAAATCA+AGG | 0.564863 | 7.3:+80910369 | None:intergenic |
| ATGAGTACGCATGACATAGG+AGG | 0.565026 | 7.3:+80911148 | None:intergenic |
| CTATGGAAGGGAGACGGTGG+TGG | 0.565686 | 7.3:-80910130 | MS.gene76002:CDS |
| AGGAGATGAAGAAAGAAGAG+AGG | 0.566892 | 7.3:-80917218 | MS.gene76002:CDS |
| AGCAGAATGCTGGGTTCAAG+TGG | 0.569157 | 7.3:-80917194 | MS.gene76002:CDS |
| ATGAAGCAGAGAAAAGGAAG+TGG | 0.569290 | 7.3:-80910602 | MS.gene76002:CDS |
| AGTGAGTGAACAAAATTTGG+CGG | 0.569833 | 7.3:+80904485 | None:intergenic |
| GCAGGTAGCACGTAAAATGA+AGG | 0.570674 | 7.3:-80910420 | MS.gene76002:intron |
| GTGGATAGGATATGGGCTGG+TGG | 0.571994 | 7.3:-80910878 | MS.gene76002:CDS |
| TGTATCGAAATGGGAAGAAG+AGG | 0.574216 | 7.3:-80916963 | MS.gene76002:CDS |
| ATTAGGCTCTGGATACTCTC+GGG | 0.574245 | 7.3:-80910940 | MS.gene76002:intron |
| CTGAAAATGAACCAGTGTGT+TGG | 0.574335 | 7.3:-80905201 | MS.gene76002:CDS |
| AGGTGCTCAGTGTTGTGGAT+AGG | 0.577161 | 7.3:-80910892 | MS.gene76002:CDS |
| TTCCACCGGTCAATTGGTCA+GGG | 0.577207 | 7.3:-80912595 | MS.gene76002:intron |
| GTACAGGCCGTGTGCAGTGT+AGG | 0.578661 | 7.3:-80916817 | MS.gene76002:CDS |
| CGAAGTATCATGAACTGGCT+TGG | 0.578975 | 7.3:-80905403 | MS.gene76002:CDS |
| CCTTGATGATACAAAACCGT+GGG | 0.579566 | 7.3:-80915866 | MS.gene76002:CDS |
| CCCTAAAATCAAGGTTATGT+GGG | 0.579880 | 7.3:+80910378 | None:intergenic |
| AGGTGATTCCATTGAGCAAG+AGG | 0.585709 | 7.3:-80916797 | MS.gene76002:intron |
| GGGATATTGGAATTTGCAGA+TGG | 0.587303 | 7.3:-80910299 | MS.gene76002:CDS |
| AATGCTGGGTTCAAGTGGCA+TGG | 0.588175 | 7.3:-80917189 | MS.gene76002:CDS |
| CTGCAAATTCCAATATCCCT+CGG | 0.588690 | 7.3:+80910303 | None:intergenic |
| GTTGTGGATAGGATATGGGC+TGG | 0.590230 | 7.3:-80910881 | MS.gene76002:CDS |
| GGGTTATTCTAGTGTTGCTG+AGG | 0.590458 | 7.3:-80917526 | MS.gene76002:CDS |
| TGATTTAAGTGTGGATGCAT+GGG | 0.591026 | 7.3:+80910344 | None:intergenic |
| TGCACAGGTAGGAAGCCGCT+TGG | 0.591173 | 7.3:-80915741 | MS.gene76002:intron |
| TTGACCGGTGGAACAACCAT+AGG | 0.593689 | 7.3:+80912605 | None:intergenic |
| TGTCACATACATTGGAGCAC+GGG | 0.596055 | 7.3:-80905634 | MS.gene76002:CDS |
| TCTGCTGAACAACCTATGGA+AGG | 0.596439 | 7.3:-80910143 | MS.gene76002:CDS |
| GGATATGTGTGAACAGAAGT+TGG | 0.597879 | 7.3:-80917067 | MS.gene76002:CDS |
| GAATCAGATCAGTCACAAGA+TGG | 0.598338 | 7.3:-80915671 | MS.gene76002:CDS |
| AACTTTGGCAAGAAGCTGCG+AGG | 0.599182 | 7.3:-80917110 | MS.gene76002:CDS |
| TCTGATTCTGATTCTGCTGG+CGG | 0.600012 | 7.3:+80915686 | None:intergenic |
| GTTTACGGTGTCACATACAT+TGG | 0.601503 | 7.3:-80905642 | MS.gene76002:CDS |
| AGGCTCTAATTGCTTTCTAG+GGG | 0.603058 | 7.3:+80911091 | None:intergenic |
| ATATGTGATATAAATGACTC+TGG | 0.605499 | 7.3:+80910035 | None:intergenic |
| AACCTTACCGCTATCAAGGA+AGG | 0.605842 | 7.3:-80905150 | MS.gene76002:CDS |
| CTCTCGGGAATACAAAATGG+AGG | 0.608290 | 7.3:-80910925 | MS.gene76002:CDS |
| AGAGGAGTGGTCCAACACAC+TGG | 0.609454 | 7.3:+80905190 | None:intergenic |
| AGGGTGGAAATTCCAAAGAT+GGG | 0.609540 | 7.3:+80903460 | None:intergenic |
| CACCACCGTCTCCCTTCCAT+AGG | 0.611801 | 7.3:+80910131 | None:intergenic |
| ATGATGGCGTTGTTGATGGC+GGG | 0.613550 | 7.3:-80916874 | MS.gene76002:CDS |
| AGTGGCATGGTTTGGCAGAG+GGG | 0.613800 | 7.3:-80917176 | MS.gene76002:CDS |
| GCATTTCATCAAACATGTGG+CGG | 0.613861 | 7.3:-80917755 | None:intergenic |
| CAAGCCCTTTAAGAATTAGA+GGG | 0.614217 | 7.3:+80915459 | None:intergenic |
| GGAATCACCTACACTGCACA+CGG | 0.614870 | 7.3:+80916810 | None:intergenic |
| TTTGTAGGTTGAAATTCCTG+AGG | 0.617422 | 7.3:-80910640 | MS.gene76002:intron |
| ATTACAGCCATCTTATCGGA+TGG | 0.617600 | 7.3:+80916910 | None:intergenic |
| CTGCTGAACAACCTATGGAA+GGG | 0.617898 | 7.3:-80910142 | MS.gene76002:CDS |
| AAGCCAGCTGATGTTTACTC+GGG | 0.619354 | 7.3:-80908177 | MS.gene76002:CDS |
| TTTACTCGGGTATAGCAGCT+AGG | 0.619553 | 7.3:-80908164 | MS.gene76002:intron |
| GTTAATTTCGTCATCAACCG+GGG | 0.622932 | 7.3:+80917251 | None:intergenic |
| GTGTCACATACATTGGAGCA+CGG | 0.625881 | 7.3:-80905635 | MS.gene76002:CDS |
| TCAGATCAGTCACAAGATGG+TGG | 0.627524 | 7.3:-80915668 | MS.gene76002:CDS |
| TTGGGAAGGAAATTGGAAGT+GGG | 0.628080 | 7.3:-80917620 | MS.gene76002:CDS |
| TGGAGTCAAGCAACAACGAG+AGG | 0.632411 | 7.3:-80911126 | MS.gene76002:CDS |
| TCTCCACGTTCAGGTAAGGG+TGG | 0.633894 | 7.3:+80903444 | None:intergenic |
| ACTTTGGCAAGAAGCTGCGA+GGG | 0.634491 | 7.3:-80917109 | MS.gene76002:CDS |
| TATTGCAGGTCATGGTCAAG+CGG | 0.635992 | 7.3:-80904523 | MS.gene76002:intron |
| CACAGGAAGTCCAAGAGGAG+TGG | 0.639013 | 7.3:+80905177 | None:intergenic |
| CTTGGTTCAGATGTATGCCG+AGG | 0.639237 | 7.3:-80910320 | MS.gene76002:CDS |
| GCAGTGAGAGGAATATTGAA+GGG | 0.639669 | 7.3:-80915889 | MS.gene76002:CDS |
| GATGATGGCGTTGTTGATGG+CGG | 0.640272 | 7.3:-80916875 | MS.gene76002:CDS |
| GCTTAGTTCGACTGATGCAG+AGG | 0.640487 | 7.3:-80917412 | MS.gene76002:CDS |
| TTGGTTCAGATGTATGCCGA+GGG | 0.640529 | 7.3:-80910319 | MS.gene76002:CDS |
| TCCATGAGTACGCATGACAT+AGG | 0.641022 | 7.3:+80911145 | None:intergenic |
| GAAAAGGAAGTGGAAATGGA+AGG | 0.642159 | 7.3:-80910592 | MS.gene76002:CDS |
| TGCACCACAGGAAGTCCAAG+AGG | 0.646359 | 7.3:+80905172 | None:intergenic |
| TACCCTGACCAATTGACCGG+TGG | 0.647824 | 7.3:+80912593 | None:intergenic |
| CAATATGCCTTCCTTGATAG+CGG | 0.647980 | 7.3:+80905143 | None:intergenic |
| CACGGGAACAGATAAAGAGA+AGG | 0.648861 | 7.3:-80905617 | MS.gene76002:CDS |
| TGAGTACGCATGACATAGGA+GGG | 0.649322 | 7.3:+80911149 | None:intergenic |
| TCTCGGGAATACAAAATGGA+GGG | 0.650415 | 7.3:-80910924 | MS.gene76002:CDS |
| TGCTGCTTTAGGAAGAGACA+AGG | 0.653323 | 7.3:-80909449 | MS.gene76002:intron |
| GCACTGGCTGAAGATACACT+TGG | 0.654832 | 7.3:-80910252 | MS.gene76002:CDS |
| AACAACCTATGGAAGGGAGA+CGG | 0.657035 | 7.3:-80910136 | MS.gene76002:CDS |
| ATGAATGCACAAATGCAGGA+CGG | 0.661737 | 7.3:+80915636 | None:intergenic |
| TTGGCAAATCTATATGGTGG+TGG | 0.662171 | 7.3:-80910233 | MS.gene76002:CDS |
| CACTTGGCAAATCTATATGG+TGG | 0.663601 | 7.3:-80910236 | MS.gene76002:CDS |
| TTCAAACATCTCCTGTAAGG+CGG | 0.669556 | 7.3:+80905432 | None:intergenic |
| GGTCCACCAAACCAGCAAGT+CGG | 0.670215 | 7.3:+80910852 | None:intergenic |
| GAACCAAAAGTTCAACCAAG+CGG | 0.670487 | 7.3:+80915726 | None:intergenic |
| TTTCCACCCTTACCTGAACG+TGG | 0.672956 | 7.3:-80903447 | MS.gene76002:CDS |
| GCCTTGATGATACAAAACCG+TGG | 0.673052 | 7.3:-80915867 | MS.gene76002:CDS |
| AAAATGGAGGGTAAATAACA+AGG | 0.673818 | 7.3:-80910912 | MS.gene76002:CDS |
| AACCTATGGAAGGGAGACGG+TGG | 0.677580 | 7.3:-80910133 | MS.gene76002:CDS |
| GAACCAAGATGATTTAAGTG+TGG | 0.679329 | 7.3:+80910335 | None:intergenic |
| TAGTTGAGCTTACATCATTG+CGG | 0.684560 | 7.3:+80910831 | None:intergenic |
| GTGGATGCATGGGATATGCA+CGG | 0.698824 | 7.3:+80910354 | None:intergenic |
| GGGACCAGTTATGAAGACAA+AGG | 0.702961 | 7.3:-80915845 | MS.gene76002:intron |
| AATTTCGTCATCAACCGGGG+CGG | 0.715363 | 7.3:+80917254 | None:intergenic |
| CTTGATGATACAAAACCGTG+GGG | 0.720789 | 7.3:-80915865 | MS.gene76002:CDS |
| GTGGGCGTGTGGATAAATCG+AGG | 0.720927 | 7.3:-80917602 | MS.gene76002:CDS |
| ATTGAAACGAGAAACCGACA+AGG | 0.751717 | 7.3:-80904986 | MS.gene76002:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 80903398 | 80917763 | 80903398 | ID=MS.gene76002 |
| chr7.3 | mRNA | 80903398 | 80917763 | 80903398 | ID=MS.gene76002.t1;Parent=MS.gene76002 |
| chr7.3 | exon | 80916798 | 80917763 | 80916798 | ID=MS.gene76002.t1.exon1;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80916798 | 80917763 | 80916798 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80915846 | 80916061 | 80915846 | ID=MS.gene76002.t1.exon2;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80915846 | 80916061 | 80915846 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80915614 | 80915756 | 80915614 | ID=MS.gene76002.t1.exon3;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80915614 | 80915756 | 80915614 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80915451 | 80915517 | 80915451 | ID=MS.gene76002.t1.exon4;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80915451 | 80915517 | 80915451 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80912596 | 80912654 | 80912596 | ID=MS.gene76002.t1.exon5;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80912596 | 80912654 | 80912596 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80911082 | 80911199 | 80911082 | ID=MS.gene76002.t1.exon6;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80911082 | 80911199 | 80911082 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80910844 | 80910957 | 80910844 | ID=MS.gene76002.t1.exon7;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80910844 | 80910957 | 80910844 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80910524 | 80910655 | 80910524 | ID=MS.gene76002.t1.exon8;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80910524 | 80910655 | 80910524 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80910022 | 80910438 | 80910022 | ID=MS.gene76002.t1.exon9;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80910022 | 80910438 | 80910022 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80909450 | 80909500 | 80909450 | ID=MS.gene76002.t1.exon10;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80909450 | 80909500 | 80909450 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80908165 | 80908235 | 80908165 | ID=MS.gene76002.t1.exon11;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80908165 | 80908235 | 80908165 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80905915 | 80905999 | 80905915 | ID=MS.gene76002.t1.exon12;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80905915 | 80905999 | 80905915 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80905551 | 80905703 | 80905551 | ID=MS.gene76002.t1.exon13;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80905551 | 80905703 | 80905551 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80905390 | 80905464 | 80905390 | ID=MS.gene76002.t1.exon14;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80905390 | 80905464 | 80905390 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80905144 | 80905233 | 80905144 | ID=MS.gene76002.t1.exon15;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80905144 | 80905233 | 80905144 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80904987 | 80905034 | 80904987 | ID=MS.gene76002.t1.exon16;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80904987 | 80905034 | 80904987 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80904423 | 80904537 | 80904423 | ID=MS.gene76002.t1.exon17;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80904423 | 80904537 | 80904423 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80904074 | 80904177 | 80904074 | ID=MS.gene76002.t1.exon18;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80904074 | 80904177 | 80904074 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| chr7.3 | exon | 80903398 | 80903508 | 80903398 | ID=MS.gene76002.t1.exon19;Parent=MS.gene76002.t1 |
| chr7.3 | CDS | 80903398 | 80903508 | 80903398 | ID=cds.MS.gene76002.t1;Parent=MS.gene76002.t1 |
| Gene Sequence |
| Protein sequence |
