Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76031.t1 | XP_013443288.1 | 100 | 91 | 0 | 0 | 1 | 91 | 22 | 112 | 2.10E-46 | 194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76031.t1 | O49884 | 96.7 | 91 | 3 | 0 | 1 | 91 | 22 | 112 | 1.3e-47 | 189.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76031.t1 | A0A072TK88 | 100.0 | 91 | 0 | 0 | 1 | 91 | 22 | 112 | 1.5e-46 | 194.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene76031 | 0.848547 | 5.72E-60 | -1.69E-46 |
| MS.gene050791 | MS.gene76031 | 0.857667 | 1.40E-62 | -1.69E-46 |
| MS.gene050912 | MS.gene76031 | 0.830329 | 3.12E-55 | -1.69E-46 |
| MS.gene050916 | MS.gene76031 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene051904 | MS.gene76031 | 0.845364 | 4.25E-59 | -1.69E-46 |
| MS.gene052664 | MS.gene76031 | 0.801918 | 7.18E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene76031 | 0.837194 | 6.00E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene76031 | 0.838499 | 2.77E-57 | -1.69E-46 |
| MS.gene057641 | MS.gene76031 | 0.848808 | 4.84E-60 | -1.69E-46 |
| MS.gene057643 | MS.gene76031 | 0.857977 | 1.13E-62 | -1.69E-46 |
| MS.gene060432 | MS.gene76031 | 0.808231 | 3.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76031.t1 | MTR_0024s0220 | 100.000 | 91 | 0 | 0 | 1 | 91 | 22 | 112 | 1.08e-63 | 188 |
| MS.gene76031.t1 | MTR_7g021030 | 97.802 | 91 | 2 | 0 | 1 | 91 | 22 | 112 | 1.21e-62 | 185 |
| MS.gene76031.t1 | MTR_5g088740 | 89.011 | 91 | 10 | 0 | 1 | 91 | 22 | 112 | 9.52e-58 | 173 |
| MS.gene76031.t1 | MTR_0024s0220 | 98.750 | 80 | 1 | 0 | 1 | 80 | 22 | 101 | 1.13e-54 | 165 |
| MS.gene76031.t1 | MTR_7g021030 | 91.379 | 58 | 5 | 0 | 1 | 58 | 22 | 79 | 6.20e-34 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76031.t1 | AT1G77940 | 89.011 | 91 | 10 | 0 | 1 | 91 | 22 | 112 | 4.88e-58 | 174 |
| MS.gene76031.t1 | AT3G18740 | 87.912 | 91 | 11 | 0 | 1 | 91 | 22 | 112 | 1.39e-57 | 172 |
| MS.gene76031.t1 | AT1G36240 | 86.813 | 91 | 12 | 0 | 1 | 91 | 22 | 112 | 4.15e-57 | 171 |
Find 22 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGTGGAAAGTATACTT+TGG | 0.445766 | 6.3:-13927914 | MS.gene76031:CDS |
| AAGAGTGGAAAGTATACTTT+GGG | 0.457788 | 6.3:-13927913 | MS.gene76031:CDS |
| TTGGAGTTCATCACTACAAC+GGG | 0.460582 | 6.3:-13926123 | MS.gene76031:CDS |
| CAACAACTCTATTGGTCTCC+AGG | 0.486404 | 6.3:+13924594 | None:intergenic |
| GACATCATCAAGACCATACC+TGG | 0.503017 | 6.3:-13924612 | MS.gene76031:CDS |
| ACTCTATTGGTCTCCAGGTA+TGG | 0.504048 | 6.3:+13924599 | None:intergenic |
| TGTCTCAGCATTGTTGATCC+TGG | 0.506683 | 6.3:-13924728 | MS.gene76031:intron |
| TATGCTATGTTGGCGAAGGT+TGG | 0.517939 | 6.3:-13926142 | MS.gene76031:CDS |
| ATCTCGGACTTCCTCAATGG+TGG | 0.525281 | 6.3:+13926172 | None:intergenic |
| TCAATCTCGGACTTCCTCAA+TGG | 0.529674 | 6.3:+13926169 | None:intergenic |
| AAACTGTTCTCAAATCTCTC+AGG | 0.530584 | 6.3:-13927885 | MS.gene76031:CDS |
| GTGGACCTCGGCACTGCTTG+CGG | 0.537789 | 6.3:-13924770 | MS.gene76031:CDS |
| CTCGCTCTTGTGATGAAGAG+TGG | 0.545906 | 6.3:-13927928 | None:intergenic |
| CTAACAATTGCCCACCATTG+AGG | 0.560937 | 6.3:-13926183 | MS.gene76031:CDS |
| CATAGCATAGTACTCAATCT+CGG | 0.571083 | 6.3:+13926156 | None:intergenic |
| GATTGAGTACTATGCTATGT+TGG | 0.583486 | 6.3:-13926152 | MS.gene76031:CDS |
| TCTCGGACTTCCTCAATGGT+GGG | 0.591390 | 6.3:+13926173 | None:intergenic |
| CTTATAGACAATGTGGACCT+CGG | 0.603044 | 6.3:-13924782 | MS.gene76031:intron |
| TTTCTTGCTTATAGACAATG+TGG | 0.618691 | 6.3:-13924789 | MS.gene76031:intron |
| GTACTATGCTATGTTGGCGA+AGG | 0.638030 | 6.3:-13926146 | MS.gene76031:CDS |
| AAATCTCTCAGGAACAACAA+AGG | 0.657253 | 6.3:-13927874 | MS.gene76031:intron |
| GTTGGAGTTCATCACTACAA+CGG | 0.670664 | 6.3:-13926124 | MS.gene76031:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAGTGTTATAATAT+TGG | + | chr6.3:13926238-13926257 | None:intergenic | 10.0% |
| !!! | AAAAAAAGTGTTATAATATT+GGG | + | chr6.3:13926237-13926256 | None:intergenic | 10.0% |
| !!! | AAATTTTAAGAGATAAAAAT+AGG | + | chr6.3:13927253-13927272 | None:intergenic | 10.0% |
| !!! | TTATAATTTTTTTTTGATTC+GGG | - | chr6.3:13925996-13926015 | MS.gene76031:intron | 10.0% |
| !! | ATAAACACTAAATGATTAAT+GGG | - | chr6.3:13926462-13926481 | MS.gene76031:intron | 15.0% |
| !! | TATAAACACTAAATGATTAA+TGG | - | chr6.3:13926461-13926480 | MS.gene76031:intron | 15.0% |
| !! | TTACTTTCTCAATTTATTAA+TGG | - | chr6.3:13926820-13926839 | MS.gene76031:intron | 15.0% |
| !!! | AAACTAAAAATTCGAATTTT+TGG | - | chr6.3:13924781-13924800 | MS.gene76031:intron | 15.0% |
| !!! | ATTTTTATTTTATGAGTAGA+TGG | - | chr6.3:13924898-13924917 | MS.gene76031:intron | 15.0% |
| !!! | TTATTTTATTTTCTGTTTTC+AGG | - | chr6.3:13927876-13927895 | MS.gene76031:CDS | 15.0% |
| !!! | TTTTTACGAATGAATATTTT+TGG | - | chr6.3:13925272-13925291 | MS.gene76031:intron | 15.0% |
| !!! | TTTTTATTTTATGAGTAGAT+GGG | - | chr6.3:13924899-13924918 | MS.gene76031:intron | 15.0% |
| !!! | TTTTTTAAGAATCATTAGTT+TGG | - | chr6.3:13926093-13926112 | MS.gene76031:intron | 15.0% |
| !! | AAACAGCTTATCAAATAAAT+AGG | - | chr6.3:13925059-13925078 | MS.gene76031:intron | 20.0% |
| !! | AAATTGAGAAAGTAAGATAT+CGG | + | chr6.3:13926815-13926834 | None:intergenic | 20.0% |
| !! | AATATTGTTTGTAACTATTG+TGG | - | chr6.3:13925613-13925632 | MS.gene76031:intron | 20.0% |
| !! | CAATAATTTCAAATCTAATC+GGG | + | chr6.3:13925506-13925525 | None:intergenic | 20.0% |
| !! | CCAATAATTTCAAATCTAAT+CGG | + | chr6.3:13925507-13925526 | None:intergenic | 20.0% |
| !! | GTTCAATTTATTCAAGAAAA+TGG | - | chr6.3:13925691-13925710 | MS.gene76031:intron | 20.0% |
| !! | TAATGCATTCTTAGAAATAA+AGG | + | chr6.3:13927356-13927375 | None:intergenic | 20.0% |
| !! | TAGACTATTGTTAACTTAAA+CGG | - | chr6.3:13927052-13927071 | MS.gene76031:intron | 20.0% |
| !! | TTTACTTACTATTTCACTTT+GGG | - | chr6.3:13927099-13927118 | MS.gene76031:intron | 20.0% |
| !!! | ACACTTTTTTTTAACTATTG+TGG | - | chr6.3:13926246-13926265 | MS.gene76031:intron | 20.0% |
| !!! | ATTCTTAAGAATGAAAGTTT+TGG | - | chr6.3:13925865-13925884 | MS.gene76031:intron | 20.0% |
| !!! | GTTAATTTGAGTTTTGTTTA+GGG | - | chr6.3:13925002-13925021 | MS.gene76031:intron | 20.0% |
| !!! | TGTTAATTTGAGTTTTGTTT+AGG | - | chr6.3:13925001-13925020 | MS.gene76031:intron | 20.0% |
| !!! | TGTTTTTTGTTAAATGTTGT+AGG | - | chr6.3:13925810-13925829 | MS.gene76031:intron | 20.0% |
| !!! | TTCTTAAGAATGAAAGTTTT+GGG | - | chr6.3:13925866-13925885 | MS.gene76031:intron | 20.0% |
| !!! | TTTATGAATGTTTTTGGAAT+GGG | - | chr6.3:13925466-13925485 | MS.gene76031:intron | 20.0% |
| !!! | TTTGACATTTTCATTGTTTT+CGG | + | chr6.3:13927324-13927343 | None:intergenic | 20.0% |
| !!! | TTTTACTTACTATTTCACTT+TGG | - | chr6.3:13927098-13927117 | MS.gene76031:intron | 20.0% |
| ! | AATAGTGCATTATATCAAGT+GGG | + | chr6.3:13926650-13926669 | None:intergenic | 25.0% |
| ! | AATGCACTATTAAATTGCTT+TGG | - | chr6.3:13926659-13926678 | MS.gene76031:intron | 25.0% |
| ! | ATACAAAATCCAATGAATCT+TGG | + | chr6.3:13925430-13925449 | None:intergenic | 25.0% |
| ! | ATTGTTATCACAAAGTAAAC+AGG | + | chr6.3:13927229-13927248 | None:intergenic | 25.0% |
| ! | TAAAATAACAACAGCAACAA+AGG | + | chr6.3:13927672-13927691 | None:intergenic | 25.0% |
| ! | TAATAGTGCATTATATCAAG+TGG | + | chr6.3:13926651-13926670 | None:intergenic | 25.0% |
| ! | TACAAAATCCAATGAATCTT+GGG | + | chr6.3:13925429-13925448 | None:intergenic | 25.0% |
| ! | TTGTTATCACAAAGTAAACA+GGG | + | chr6.3:13927228-13927247 | None:intergenic | 25.0% |
| !! | AAGATTCATTGGATTTTGTA+TGG | - | chr6.3:13925429-13925448 | MS.gene76031:intron | 25.0% |
| !! | AGATTTTTCGTTGCAATATT+AGG | - | chr6.3:13927202-13927221 | MS.gene76031:intron | 25.0% |
| !! | CCGATTAGATTTGAAATTAT+TGG | - | chr6.3:13925504-13925523 | MS.gene76031:intron | 25.0% |
| !! | GACTTCTTTATGAATGTTTT+TGG | - | chr6.3:13925460-13925479 | MS.gene76031:intron | 25.0% |
| !! | GGGAAGAATGAATTTAATTT+GGG | - | chr6.3:13925765-13925784 | MS.gene76031:intron | 25.0% |
| !! | GGTTTTTACAAAATTGAAGT+TGG | - | chr6.3:13925307-13925326 | MS.gene76031:intron | 25.0% |
| !! | TCTAGCTCAATTGAATTAAT+GGG | - | chr6.3:13924726-13924745 | MS.gene76031:intron | 25.0% |
| !! | TTAGTTTGGTTTCGTAAATA+TGG | - | chr6.3:13926107-13926126 | MS.gene76031:intron | 25.0% |
| !!! | ACGAATGAATATTTTTGGTA+TGG | - | chr6.3:13925277-13925296 | MS.gene76031:intron | 25.0% |
| !!! | ATTTGCTGTATACATTTTGT+TGG | - | chr6.3:13926604-13926623 | MS.gene76031:intron | 25.0% |
| !!! | CGAATGAATATTTTTGGTAT+GGG | - | chr6.3:13925278-13925297 | MS.gene76031:intron | 25.0% |
| !!! | CTTTATGAATGTTTTTGGAA+TGG | - | chr6.3:13925465-13925484 | MS.gene76031:intron | 25.0% |
| !!! | GAAATTGTTGATTTAACCAA+TGG | - | chr6.3:13926149-13926168 | MS.gene76031:CDS | 25.0% |
| !!! | GACTTTTTCAATTTTATGCA+GGG | - | chr6.3:13926296-13926315 | MS.gene76031:intron | 25.0% |
| !!! | TATTTTTGGTATGGGAAATA+TGG | - | chr6.3:13925286-13925305 | MS.gene76031:intron | 25.0% |
| !!! | TCTGATTTTTAGCATTTGTT+TGG | - | chr6.3:13924699-13924718 | MS.gene76031:intron | 25.0% |
| !!! | TGACTTTTTCAATTTTATGC+AGG | - | chr6.3:13926295-13926314 | MS.gene76031:intron | 25.0% |
| !!! | TGAGATTTATGGTTTTTTTC+AGG | - | chr6.3:13925891-13925910 | MS.gene76031:intron | 25.0% |
| !!! | TTACTTCCTCAATTTGTTAA+TGG | - | chr6.3:13926974-13926993 | MS.gene76031:intron | 25.0% |
| !!! | TTATGGTTTTGTTTGGATTT+GGG | - | chr6.3:13924936-13924955 | MS.gene76031:intron | 25.0% |
| !!! | TTCTAGCTCAATTGAATTAA+TGG | - | chr6.3:13924725-13924744 | MS.gene76031:intron | 25.0% |
| !!! | TTTATGGTTTTGTTTGGATT+TGG | - | chr6.3:13924935-13924954 | MS.gene76031:intron | 25.0% |
| !!! | TTTTTTAACTATTGTGGATG+TGG | - | chr6.3:13926252-13926271 | MS.gene76031:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr6.3:13925203-13925222 | MS.gene76031:intron | 30.0% | |
| AAAGTTAAGTCAATCCAAAC+AGG | + | chr6.3:13925028-13925047 | None:intergenic | 30.0% | |
| AAGTTAACAATAGTCTAGCT+AGG | + | chr6.3:13927049-13927068 | None:intergenic | 30.0% | |
| AATATACAACATACAGCTCA+TGG | + | chr6.3:13926188-13926207 | None:intergenic | 30.0% | |
| AGGAGTAAGTTTGTAATGTT+TGG | - | chr6.3:13925911-13925930 | MS.gene76031:intron | 30.0% | |
| ATAGTGCATTATATCAAGTG+GGG | + | chr6.3:13926649-13926668 | None:intergenic | 30.0% | |
| ATTTAACCAATGGAGAAATG+TGG | - | chr6.3:13926159-13926178 | MS.gene76031:CDS | 30.0% | |
| CACACAAAACAAAATACTCA+TGG | + | chr6.3:13925555-13925574 | None:intergenic | 30.0% | |
| GGGGAAGAATGAATTTAATT+TGG | - | chr6.3:13925764-13925783 | MS.gene76031:intron | 30.0% | |
| GTATCGAATAATATGTTACC+AGG | + | chr6.3:13927811-13927830 | None:intergenic | 30.0% | |
| TAAATGTCAAATTCCTGATG+TGG | + | chr6.3:13927609-13927628 | None:intergenic | 30.0% | |
| TCAACACCATTAACAAATTG+AGG | + | chr6.3:13926983-13927002 | None:intergenic | 30.0% | |
| TGTTATTCATAAGCTTGTCA+AGG | + | chr6.3:13925154-13925173 | None:intergenic | 30.0% | |
| TTGATATGTGTTGAAACAAC+AGG | + | chr6.3:13926719-13926738 | None:intergenic | 30.0% | |
| TTTCTTGCTTATAGACAATG+TGG | - | chr6.3:13927729-13927748 | MS.gene76031:intron | 30.0% | |
| ! | AACGTTTTCACAAAGTAAAC+AGG | - | chr6.3:13927483-13927502 | MS.gene76031:intron | 30.0% |
| ! | AAGAGTGGAAAGTATACTTT+GGG | - | chr6.3:13924605-13924624 | MS.gene76031:CDS | 30.0% |
| ! | CAAAACTGTTGTGAACATTT+TGG | + | chr6.3:13927561-13927580 | None:intergenic | 30.0% |
| ! | CTATTTTCCCACAACATTAA+GGG | + | chr6.3:13925229-13925248 | None:intergenic | 30.0% |
| ! | GTGGGAAAATAGATTTTGTA+TGG | - | chr6.3:13925237-13925256 | MS.gene76031:intron | 30.0% |
| ! | TCATTGATTGCTAGAGAAAT+GGG | - | chr6.3:13925341-13925360 | MS.gene76031:intron | 30.0% |
| ! | TCTATTTTCCCACAACATTA+AGG | + | chr6.3:13925230-13925249 | None:intergenic | 30.0% |
| ! | TGTTGTATTGTTTGACTTTG+AGG | - | chr6.3:13925720-13925739 | MS.gene76031:intron | 30.0% |
| ! | TTTAGCTCGATTTAGTTGAT+GGG | - | chr6.3:13924837-13924856 | MS.gene76031:intron | 30.0% |
| ! | TTTGATTCAAGTGTTGTGTT+CGG | - | chr6.3:13926551-13926570 | MS.gene76031:intron | 30.0% |
| !! | AATGTATGGCTTTTGGAAAT+GGG | - | chr6.3:13924966-13924985 | MS.gene76031:intron | 30.0% |
| !! | TTAATTTGGGTTGTGAAATC+TGG | - | chr6.3:13925778-13925797 | MS.gene76031:intron | 30.0% |
| !! | TTATTTTATGAGTAGATGGG+AGG | - | chr6.3:13924902-13924921 | MS.gene76031:intron | 30.0% |
| !!! | AGATTGGTTTTGTATGGATT+TGG | - | chr6.3:13925743-13925762 | MS.gene76031:intron | 30.0% |
| !!! | AGTTTTGGGTTTGAGATTTA+TGG | - | chr6.3:13925880-13925899 | MS.gene76031:intron | 30.0% |
| !!! | ATTGGTTTTGTATGGATTTG+GGG | - | chr6.3:13925745-13925764 | MS.gene76031:intron | 30.0% |
| !!! | CATGAGTATTTTGTTTTGTG+TGG | - | chr6.3:13925553-13925572 | MS.gene76031:intron | 30.0% |
| !!! | GAGGTTTTTATGGTTTTGTT+TGG | - | chr6.3:13924929-13924948 | MS.gene76031:intron | 30.0% |
| !!! | GATTGGTTTTGTATGGATTT+GGG | - | chr6.3:13925744-13925763 | MS.gene76031:intron | 30.0% |
| !!! | GTTTTTTGGTTTGTGAAATG+TGG | - | chr6.3:13926029-13926048 | MS.gene76031:intron | 30.0% |
| !!! | TATGGTTTTGTTTGGATTTG+GGG | - | chr6.3:13924937-13924956 | MS.gene76031:intron | 30.0% |
| !!! | TGTTTTTGGAATGGGAAATA+TGG | - | chr6.3:13925474-13925493 | MS.gene76031:intron | 30.0% |
| !!! | TTTTAGCTCGATTTAGTTGA+TGG | - | chr6.3:13924836-13924855 | MS.gene76031:intron | 30.0% |
| !!! | TTTTCTGTTTTCAGGTGATT+CGG | - | chr6.3:13927884-13927903 | MS.gene76031:CDS | 30.0% |
| AAAAGTTAACAAGTCTGGCT+AGG | + | chr6.3:13926894-13926913 | None:intergenic | 35.0% | |
| AAACTGTTCTCAAATCTCTC+AGG | - | chr6.3:13924633-13924652 | MS.gene76031:intron | 35.0% | |
| AAATCTCTCAGGAACAACAA+AGG | - | chr6.3:13924644-13924663 | MS.gene76031:intron | 35.0% | |
| AGACCTAATGCACTTCTTAA+GGG | + | chr6.3:13927509-13927528 | None:intergenic | 35.0% | |
| AGATACGACTTCGATTCAAA+GGG | + | chr6.3:13926753-13926772 | None:intergenic | 35.0% | |
| AGTCTAGCTAGGTTATACAA+AGG | + | chr6.3:13927038-13927057 | None:intergenic | 35.0% | |
| ATAGGTTTCCCAAGATTCAT+TGG | - | chr6.3:13925418-13925437 | MS.gene76031:intron | 35.0% | |
| ATTTGGGGAGAATGAATGTA+TGG | - | chr6.3:13924952-13924971 | MS.gene76031:intron | 35.0% | |
| CATACAGAACAGAATACTCA+TGG | + | chr6.3:13925371-13925390 | None:intergenic | 35.0% | |
| CATAGCATAGTACTCAATCT+CGG | + | chr6.3:13926365-13926384 | None:intergenic | 35.0% | |
| CCTTCAAAAGTTAACAAGTC+TGG | + | chr6.3:13926899-13926918 | None:intergenic | 35.0% | |
| GAATCAAAAGCTAGAGAATG+TGG | + | chr6.3:13926539-13926558 | None:intergenic | 35.0% | |
| GAATGTAACCAATGTATCAG+TGG | + | chr6.3:13926947-13926966 | None:intergenic | 35.0% | |
| GAGTATTCTGTTCTGTATGT+TGG | - | chr6.3:13925372-13925391 | MS.gene76031:intron | 35.0% | |
| GATTGAGTACTATGCTATGT+TGG | - | chr6.3:13926366-13926385 | MS.gene76031:intron | 35.0% | |
| GTCTCTTTGATTGTGAAATG+TGG | - | chr6.3:13925526-13925545 | MS.gene76031:intron | 35.0% | |
| TAGACCTAATGCACTTCTTA+AGG | + | chr6.3:13927510-13927529 | None:intergenic | 35.0% | |
| TAGATACGACTTCGATTCAA+AGG | + | chr6.3:13926754-13926773 | None:intergenic | 35.0% | |
| TGTTATGTTGCAACTGTTGT+AGG | - | chr6.3:13926061-13926080 | MS.gene76031:intron | 35.0% | |
| TTAACTTAAACGGCTGTTGT+TGG | - | chr6.3:13927062-13927081 | MS.gene76031:intron | 35.0% | |
| TTGTGTGGAAGAGATTGAAA+TGG | - | chr6.3:13925568-13925587 | MS.gene76031:intron | 35.0% | |
| ! | AGCTTTTGTATGCTTCTGTT+GGG | - | chr6.3:13925838-13925857 | MS.gene76031:intron | 35.0% |
| ! | GAAGAGTGGAAAGTATACTT+TGG | - | chr6.3:13924604-13924623 | MS.gene76031:CDS | 35.0% |
| ! | GAGAATGAATGTATGGCTTT+TGG | - | chr6.3:13924959-13924978 | MS.gene76031:intron | 35.0% |
| ! | GAGTATTTTGTTCTGTGTGT+TGG | - | chr6.3:13925959-13925978 | MS.gene76031:intron | 35.0% |
| ! | GTCATTGATTGCTAGAGAAA+TGG | - | chr6.3:13925340-13925359 | MS.gene76031:intron | 35.0% |
| ! | TAGCTTTTGTATGCTTCTGT+TGG | - | chr6.3:13925837-13925856 | MS.gene76031:intron | 35.0% |
| ! | TTGTTTGACTTTGAGGAGAT+TGG | - | chr6.3:13925727-13925746 | MS.gene76031:intron | 35.0% |
| !! | AACAGGCTATTTTACGTATG+AGG | + | chr6.3:13926702-13926721 | None:intergenic | 35.0% |
| !! | ATGTATGGCTTTTGGAAATG+GGG | - | chr6.3:13924967-13924986 | MS.gene76031:intron | 35.0% |
| !! | GAATGTATGGCTTTTGGAAA+TGG | - | chr6.3:13924965-13924984 | MS.gene76031:intron | 35.0% |
| !! | TTGGTTTTCTCGATGGATAT+TGG | - | chr6.3:13925930-13925949 | MS.gene76031:intron | 35.0% |
| !!! | CCAGACTTGTTAACTTTTGA+AGG | - | chr6.3:13926896-13926915 | MS.gene76031:intron | 35.0% |
| !!! | GTAATGTTTGGTTTTCTCGA+TGG | - | chr6.3:13925923-13925942 | MS.gene76031:intron | 35.0% |
| !!! | TTGAGGAGATTGGTTTTGTA+TGG | - | chr6.3:13925737-13925756 | MS.gene76031:intron | 35.0% |
| AAACAGGCCCTTAATGTTGT+GGG | - | chr6.3:13925219-13925238 | MS.gene76031:intron | 40.0% | |
| AATCTTGGGAAACCTATTCG+CGG | + | chr6.3:13925415-13925434 | None:intergenic | 40.0% | |
| ATAAGCATTAGCACAGACAC+CGG | + | chr6.3:13926865-13926884 | None:intergenic | 40.0% | |
| ATCGAAGTCGTATCTAGTGT+CGG | - | chr6.3:13926758-13926777 | MS.gene76031:intron | 40.0% | |
| ATTGTAGGACTGACAGTCTT+TGG | - | chr6.3:13926578-13926597 | MS.gene76031:intron | 40.0% | |
| CATTAGGTCTATCAGATCTG+AGG | - | chr6.3:13927519-13927538 | MS.gene76031:intron | 40.0% | |
| CTTATAGACAATGTGGACCT+CGG | - | chr6.3:13927736-13927755 | MS.gene76031:intron | 40.0% | |
| GTTGGAGTTCATCACTACAA+CGG | - | chr6.3:13926394-13926413 | MS.gene76031:intron | 40.0% | |
| TGTTGATGTGTTGTCTTGTC+CGG | - | chr6.3:13926843-13926862 | MS.gene76031:intron | 40.0% | |
| TTGGAGTTCATCACTACAAC+GGG | - | chr6.3:13926395-13926414 | MS.gene76031:intron | 40.0% | |
| ! | GGGAGGAAATGAGGTTTTTA+TGG | - | chr6.3:13924919-13924938 | MS.gene76031:intron | 40.0% |
| !! | GTAAGATATCGGTGTTGTGT+TGG | + | chr6.3:13926804-13926823 | None:intergenic | 40.0% |
| !! | TATCGGTGTTGTGTTGGTAT+TGG | + | chr6.3:13926798-13926817 | None:intergenic | 40.0% |
| !! | TGCTGCTGCTAAATTTTGAC+TGG | - | chr6.3:13927153-13927172 | MS.gene76031:intron | 40.0% |
| !!! | AGTTTTGTTTAGGGCCTGTT+TGG | - | chr6.3:13925011-13925030 | MS.gene76031:intron | 40.0% |
| !!! | CGGGAAGAGTGAATGTTTTT+TGG | - | chr6.3:13926015-13926034 | MS.gene76031:intron | 40.0% |
| CAAACAGGCCCTTAATGTTG+TGG | - | chr6.3:13925218-13925237 | MS.gene76031:intron | 45.0% | |
| CACAACATTAAGGGCCTGTT+TGG | + | chr6.3:13925220-13925239 | None:intergenic | 45.0% | |
| CATTAAGGGCCTGTTTGGAT+TGG | + | chr6.3:13925215-13925234 | None:intergenic | 45.0% | |
| CTAACAATTGCCCACCATTG+AGG | - | chr6.3:13926335-13926354 | MS.gene76031:intron | 45.0% | |
| GAAACCTATTCGCGGCAATT+AGG | + | chr6.3:13925407-13925426 | None:intergenic | 45.0% | |
| GAAGAGAGAATGCTAGCTAG+AGG | + | chr6.3:13927379-13927398 | None:intergenic | 45.0% | |
| GACATCATCAAGACCATACC+TGG | - | chr6.3:13927906-13927925 | MS.gene76031:CDS | 45.0% | |
| GGGGTTAAGCTACTTAAGAC+AGG | + | chr6.3:13926630-13926649 | None:intergenic | 45.0% | |
| GTACTATGCTATGTTGGCGA+AGG | - | chr6.3:13926372-13926391 | MS.gene76031:intron | 45.0% | |
| GTTGTGTTCGGTCACATTGT+AGG | - | chr6.3:13926563-13926582 | MS.gene76031:intron | 45.0% | |
| TATGCTATGTTGGCGAAGGT+TGG | - | chr6.3:13926376-13926395 | MS.gene76031:intron | 45.0% | |
| TCAATCTCGGACTTCCTCAA+TGG | + | chr6.3:13926352-13926371 | None:intergenic | 45.0% | |
| TGAGTAGATGGGAGGAAATG+AGG | - | chr6.3:13924910-13924929 | MS.gene76031:intron | 45.0% | |
| TGGTCACCACATTTCTCCAT+TGG | + | chr6.3:13926168-13926187 | None:intergenic | 45.0% | |
| TGTCTCAGCATTGTTGATCC+TGG | - | chr6.3:13927790-13927809 | MS.gene76031:intron | 45.0% | |
| TTGATCAGTTGAGCCACATC+AGG | - | chr6.3:13927593-13927612 | MS.gene76031:intron | 45.0% | |
| ! | AGGCCCTTAAGAAGTGCATT+AGG | - | chr6.3:13927503-13927522 | MS.gene76031:intron | 45.0% |
| ! | GAATGTGGCTTGCAAGTTCA+AGG | + | chr6.3:13926524-13926543 | None:intergenic | 45.0% |
| !! | AAAGGCACTAGCACAGACAT+CGG | + | chr6.3:13927020-13927039 | None:intergenic | 45.0% |
| !!! | TTTATAATTTTTTTTTGATT+CGG | - | chr6.3:13925995-13926014 | MS.gene76031:intron | 5.0% |
| ATCTCGGACTTCCTCAATGG+TGG | + | chr6.3:13926349-13926368 | None:intergenic | 50.0% | |
| CCAATGTATCAGTGGTGCGT+CGG | + | chr6.3:13926939-13926958 | None:intergenic | 50.0% | |
| GAAGCCTAATTGCCGCGAAT+AGG | - | chr6.3:13925400-13925419 | MS.gene76031:intron | 50.0% | |
| TCTCGGACTTCCTCAATGGT+GGG | + | chr6.3:13926348-13926367 | None:intergenic | 50.0% | |
| !!! | TATCAGTGGTGCGTCGGTTT+TGG | + | chr6.3:13926933-13926952 | None:intergenic | 50.0% |
| CCGACGCACCACTGATACAT+TGG | - | chr6.3:13926936-13926955 | MS.gene76031:intron | 55.0% | |
| ! | ATTTTCCGCAAGCAGTGCCG+AGG | + | chr6.3:13927756-13927775 | None:intergenic | 55.0% |
| GTGGACCTCGGCACTGCTTG+CGG | - | chr6.3:13927748-13927767 | MS.gene76031:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 13924602 | 13927938 | 13924602 | ID=MS.gene76031 |
| chr6.3 | mRNA | 13924602 | 13927938 | 13924602 | ID=MS.gene76031.t1;Parent=MS.gene76031 |
| chr6.3 | exon | 13927875 | 13927938 | 13927875 | ID=MS.gene76031.t1.exon1;Parent=MS.gene76031.t1 |
| chr6.3 | CDS | 13927875 | 13927938 | 13927875 | ID=cds.MS.gene76031.t1;Parent=MS.gene76031.t1 |
| chr6.3 | exon | 13926122 | 13926223 | 13926122 | ID=MS.gene76031.t1.exon2;Parent=MS.gene76031.t1 |
| chr6.3 | CDS | 13926122 | 13926223 | 13926122 | ID=cds.MS.gene76031.t1;Parent=MS.gene76031.t1 |
| chr6.3 | exon | 13924729 | 13924797 | 13924729 | ID=MS.gene76031.t1.exon3;Parent=MS.gene76031.t1 |
| chr6.3 | CDS | 13924729 | 13924797 | 13924729 | ID=cds.MS.gene76031.t1;Parent=MS.gene76031.t1 |
| chr6.3 | exon | 13924602 | 13924642 | 13924602 | ID=MS.gene76031.t1.exon4;Parent=MS.gene76031.t1 |
| chr6.3 | CDS | 13924602 | 13924642 | 13924602 | ID=cds.MS.gene76031.t1;Parent=MS.gene76031.t1 |
| Gene Sequence |
| Protein sequence |
