Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76273.t1 | GAU14859.1 | 93 | 497 | 31 | 2 | 2 | 496 | 1 | 495 | 7.30E-258 | 899.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76273.t1 | Q869R1 | 27.2 | 364 | 253 | 6 | 114 | 472 | 199 | 555 | 9.0e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76273.t1 | A0A2Z6MF80 | 93.0 | 497 | 31 | 2 | 2 | 496 | 1 | 495 | 5.3e-258 | 899.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04998 | MS.gene76273 | 0.817188 | 3.75E-52 | -1.69E-46 |
| MS.gene051699 | MS.gene76273 | 0.827128 | 1.86E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene76273 | 0.856894 | 2.36E-62 | -1.69E-46 |
| MS.gene052793 | MS.gene76273 | 0.819853 | 9.34E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene76273 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene054222 | MS.gene76273 | 0.840816 | 6.92E-58 | -1.69E-46 |
| MS.gene054892 | MS.gene76273 | 0.807429 | 5.08E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene76273 | 0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene05636 | MS.gene76273 | 0.801776 | 7.68E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene76273 | 0.820707 | 5.95E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene76273 | 0.84132 | 5.10E-58 | -1.69E-46 |
| MS.gene058159 | MS.gene76273 | 0.825706 | 4.05E-54 | -1.69E-46 |
| MS.gene05952 | MS.gene76273 | 0.826496 | 2.63E-54 | -1.69E-46 |
| MS.gene059774 | MS.gene76273 | 0.823813 | 1.13E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene76273 | -0.824283 | 8.78E-54 | -1.69E-46 |
| MS.gene060697 | MS.gene76273 | 0.820591 | 6.33E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76273.t1 | MTR_1g111330 | 99.395 | 496 | 3 | 0 | 1 | 496 | 1 | 496 | 0.0 | 999 |
| MS.gene76273.t1 | MTR_5g054780 | 80.000 | 485 | 94 | 1 | 13 | 494 | 7 | 491 | 0.0 | 769 |
| MS.gene76273.t1 | MTR_1g111330 | 98.860 | 351 | 4 | 0 | 1 | 351 | 1 | 351 | 0.0 | 699 |
| MS.gene76273.t1 | MTR_4g108910 | 84.247 | 146 | 10 | 1 | 351 | 496 | 2 | 134 | 9.42e-82 | 250 |
| MS.gene76273.t1 | MTR_3g033520 | 26.689 | 296 | 203 | 3 | 156 | 451 | 242 | 523 | 1.01e-27 | 117 |
| MS.gene76273.t1 | MTR_3g033520 | 26.689 | 296 | 203 | 3 | 156 | 451 | 261 | 542 | 1.07e-27 | 117 |
| MS.gene76273.t1 | MTR_7g086710 | 24.439 | 401 | 276 | 9 | 90 | 482 | 74 | 455 | 2.31e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76273.t1 | AT1G25500 | 75.926 | 486 | 110 | 3 | 1 | 482 | 1 | 483 | 0.0 | 695 |
| MS.gene76273.t1 | AT1G25500 | 78.729 | 409 | 86 | 1 | 75 | 482 | 17 | 425 | 0.0 | 620 |
| MS.gene76273.t1 | AT1G25500 | 81.188 | 303 | 56 | 1 | 127 | 428 | 1 | 303 | 1.89e-170 | 483 |
| MS.gene76273.t1 | AT5G13760 | 24.777 | 448 | 286 | 11 | 23 | 451 | 118 | 533 | 6.72e-32 | 129 |
| MS.gene76273.t1 | AT3G04440 | 24.500 | 400 | 278 | 11 | 90 | 484 | 63 | 443 | 5.60e-17 | 83.6 |
| MS.gene76273.t1 | AT3G04440 | 24.500 | 400 | 278 | 11 | 90 | 484 | 86 | 466 | 6.32e-17 | 83.6 |
| MS.gene76273.t1 | AT3G03700 | 24.500 | 400 | 278 | 11 | 90 | 484 | 86 | 466 | 6.49e-17 | 83.6 |
Find 124 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGGTTAACCGAAACTTAT+TGG | 0.156204 | 1.1:-78595320 | MS.gene76273:CDS |
| GTGTTTCTTGTTCTTCTTCA+TGG | 0.194172 | 1.1:-78594013 | MS.gene76273:CDS |
| GATTGCACTGGGATTCCTTT+TGG | 0.198367 | 1.1:-78595424 | MS.gene76273:CDS |
| GGTGGAATTGGGACTGTTCT+TGG | 0.249819 | 1.1:-78595279 | MS.gene76273:CDS |
| GTGTTTGGGCGTGGGTTAAA+TGG | 0.262462 | 1.1:-78592908 | MS.gene76273:CDS |
| TATGCGGCTGCTGGTGGAAT+TGG | 0.288454 | 1.1:-78595291 | MS.gene76273:CDS |
| TCCCATCTTTGAATCAATAA+AGG | 0.295109 | 1.1:+78592552 | None:intergenic |
| CATTATTTACTGCGGCTATC+AGG | 0.296862 | 1.1:-78593898 | MS.gene76273:CDS |
| CTGGAACTTGTGCTGGTGTT+TGG | 0.300120 | 1.1:-78592923 | MS.gene76273:CDS |
| CATGCTCATGGGTATGGTTT+TGG | 0.306935 | 1.1:-78592853 | MS.gene76273:intron |
| TGACTTCGCTTCCGCCATTC+AGG | 0.310826 | 1.1:-78595970 | MS.gene76273:intron |
| CACTTACAGATAGCTGTTAA+TGG | 0.312347 | 1.1:-78593074 | MS.gene76273:intron |
| TGCAGAACCAGCATCGTAAA+TGG | 0.317444 | 1.1:+78594385 | None:intergenic |
| ATGGACTTGGTTGTTGTTGT+TGG | 0.342035 | 1.1:-78595256 | MS.gene76273:CDS |
| GGTTAACCCGGCATGATTCC+CGG | 0.344297 | 1.1:+78595332 | None:intergenic |
| TGGATGGCCTTATGGTCATT+TGG | 0.345668 | 1.1:-78594286 | MS.gene76273:CDS |
| TGGGAGTTATTCCAATCAAC+TGG | 0.349178 | 1.1:-78593020 | MS.gene76273:CDS |
| AAGTACACTCCTGGTCTTAC+CGG | 0.351688 | 1.1:-78595351 | MS.gene76273:CDS |
| TCACATCCTCACCACTTATC+TGG | 0.355225 | 1.1:-78595199 | MS.gene76273:CDS |
| TATGCTTTAACAACATCTTT+TGG | 0.365686 | 1.1:-78593938 | MS.gene76273:CDS |
| TGGAACTTGTGCTGGTGTTT+GGG | 0.373882 | 1.1:-78592922 | MS.gene76273:CDS |
| CTTGTGCTGGTGTTTGGGCG+TGG | 0.385820 | 1.1:-78592917 | MS.gene76273:CDS |
| TGATTTCCTCTTTCATCTTG+TGG | 0.389585 | 1.1:-78593705 | MS.gene76273:CDS |
| TGGCCGCTTTATGCGGCTGC+TGG | 0.391745 | 1.1:-78595300 | MS.gene76273:CDS |
| CTTTCATCATTTGAGTAGCC+TGG | 0.393996 | 1.1:+78595229 | None:intergenic |
| ATGCGGCTGCTGGTGGAATT+GGG | 0.395736 | 1.1:-78595290 | MS.gene76273:CDS |
| GGTTGGATTGGCAATGGTTG+TGG | 0.400792 | 1.1:-78592619 | MS.gene76273:CDS |
| TGGTAAAAGCTTCAACAATT+CGG | 0.402401 | 1.1:-78593054 | MS.gene76273:CDS |
| ATACTGCAAAGATTTCATTA+AGG | 0.403891 | 1.1:+78593958 | None:intergenic |
| TGGACTTGGTTGTTGTTGTT+GGG | 0.404889 | 1.1:-78595255 | MS.gene76273:CDS |
| CACATCCATGCTCATGGGTA+TGG | 0.406680 | 1.1:-78592859 | MS.gene76273:CDS |
| ACCCTTTATTGATTCAAAGA+TGG | 0.412790 | 1.1:-78592554 | MS.gene76273:CDS |
| GTTGTTGTTGTTGGGTTCCC+AGG | 0.413364 | 1.1:-78595247 | MS.gene76273:CDS |
| TAACAAATATGCCTATGTTC+AGG | 0.414206 | 1.1:-78593663 | MS.gene76273:intron |
| CCCTTTATTGATTCAAAGAT+GGG | 0.419622 | 1.1:-78592553 | MS.gene76273:CDS |
| GGACTGTTCTTGGATGGACT+TGG | 0.421193 | 1.1:-78595269 | MS.gene76273:CDS |
| AGTGATAGAGTTATTATGAT+TGG | 0.422509 | 1.1:-78592885 | MS.gene76273:CDS |
| CTTGTGGCATATGATTGTTC+AGG | 0.424285 | 1.1:-78592987 | MS.gene76273:CDS |
| GTGCCTCAACCCCAGTTGAT+TGG | 0.426924 | 1.1:+78593009 | None:intergenic |
| AATATAGGAGTGCTCGAGCC+AGG | 0.436736 | 1.1:-78592482 | MS.gene76273:CDS |
| CCGCTTTATGCGGCTGCTGG+TGG | 0.442048 | 1.1:-78595297 | MS.gene76273:CDS |
| TGTGATTCATTTGATTGCAC+TGG | 0.442197 | 1.1:-78595436 | MS.gene76273:CDS |
| ACTGTGCATGTTATAGTGTC+TGG | 0.442564 | 1.1:-78594040 | MS.gene76273:CDS |
| AAAGAGGGAGAATCCATCAT+TGG | 0.446656 | 1.1:+78596008 | None:intergenic |
| CAGACTTCCATTTACGATGC+TGG | 0.447339 | 1.1:-78594392 | MS.gene76273:CDS |
| CCCATCTTTGAATCAATAAA+GGG | 0.449353 | 1.1:+78592553 | None:intergenic |
| TCTTTCAGATACGTGGACTT+AGG | 0.451037 | 1.1:-78593766 | MS.gene76273:intron |
| TTATGGTCATTTGGAGCAGC+AGG | 0.454748 | 1.1:-78594277 | MS.gene76273:CDS |
| TACATCACCGACTTCAATAT+AGG | 0.460955 | 1.1:-78592497 | MS.gene76273:CDS |
| ATAAAGCGGCCAATAAGTTT+CGG | 0.462577 | 1.1:+78595311 | None:intergenic |
| GAATTGGGACTGTTCTTGGA+TGG | 0.462942 | 1.1:-78595275 | MS.gene76273:CDS |
| TGGCGTCGGCAGCAGTGAAA+TGG | 0.464395 | 1.1:-78595514 | MS.gene76273:CDS |
| GATTTCATTAAGGAGTTAGC+AGG | 0.469510 | 1.1:+78593968 | None:intergenic |
| CGGCAGAACAATCGCGGCGG+TGG | 0.470242 | 1.1:-78595485 | MS.gene76273:CDS |
| CGACGCCACTTCTCCTACTC+CGG | 0.471521 | 1.1:+78595529 | None:intergenic |
| TTGTGCTGGTGTTTGGGCGT+GGG | 0.472291 | 1.1:-78592916 | MS.gene76273:CDS |
| GGTCTTACCGGGAATCATGC+CGG | 0.474937 | 1.1:-78595339 | MS.gene76273:CDS |
| TGCTGCTCCAAATGACCATA+AGG | 0.477819 | 1.1:+78594279 | None:intergenic |
| AACTTATTGGCCGCTTTATG+CGG | 0.485649 | 1.1:-78595307 | MS.gene76273:CDS |
| CGAGAAAACGCCTCTATATG+AGG | 0.486880 | 1.1:-78592432 | None:intergenic |
| ATTCCAATCAACTGGGGTTG+AGG | 0.495610 | 1.1:-78593012 | MS.gene76273:CDS |
| TGGCTCCACATCCATGCTCA+TGG | 0.509273 | 1.1:-78592865 | MS.gene76273:CDS |
| GTGGCTTCAAACTTGAGTGA+TGG | 0.511129 | 1.1:-78594250 | MS.gene76273:CDS |
| GGCTATCAGGACACTGCGAT+GGG | 0.512972 | 1.1:-78593885 | MS.gene76273:CDS |
| CGTGGACTTAGGTCAAAGAT+TGG | 0.513470 | 1.1:-78593755 | MS.gene76273:CDS |
| ATTTGGAGCAGCAGGTGTTG+TGG | 0.514073 | 1.1:-78594269 | MS.gene76273:CDS |
| TGGCTTCAAACTTGAGTGAT+GGG | 0.514253 | 1.1:-78594249 | MS.gene76273:CDS |
| TTGATAACTGGAACTTGTGC+TGG | 0.515273 | 1.1:-78592930 | MS.gene76273:CDS |
| CACGACACTCTCATGACCTC+GGG | 0.515499 | 1.1:+78594334 | None:intergenic |
| ACATGTGAATCCTCATATAG+AGG | 0.516243 | 1.1:+78592422 | None:intergenic |
| AACTGGGGTTGAGGCACTTG+TGG | 0.518075 | 1.1:-78593003 | MS.gene76273:CDS |
| GATGTAGTGTCTCAGACATC+TGG | 0.524115 | 1.1:+78592514 | None:intergenic |
| CAGCAGTGAAATGGTGGTGG+CGG | 0.525942 | 1.1:-78595505 | MS.gene76273:CDS |
| GGCTCCACATCCATGCTCAT+GGG | 0.527680 | 1.1:-78592864 | MS.gene76273:CDS |
| GGGACGCTGGTGGCTTCTTG+TGG | 0.527891 | 1.1:-78594227 | MS.gene76273:intron |
| CCAATAAGTTTCGGTTAACC+CGG | 0.528188 | 1.1:+78595320 | None:intergenic |
| TTTCATCATTTGAGTAGCCT+GGG | 0.528321 | 1.1:+78595230 | None:intergenic |
| GTCTTACCGGGAATCATGCC+GGG | 0.530497 | 1.1:-78595338 | MS.gene76273:CDS |
| ATGATGATTCATAACCTGAA+TGG | 0.532760 | 1.1:+78595956 | None:intergenic |
| TGGATTGGCAATGGTTGTGG+TGG | 0.533456 | 1.1:-78592616 | MS.gene76273:CDS |
| ATGTTATATCCGTCATAGAC+AGG | 0.534896 | 1.1:-78595092 | MS.gene76273:intron |
| CGGCTATCAGGACACTGCGA+TGG | 0.536707 | 1.1:-78593886 | MS.gene76273:CDS |
| GACGCCACTTCTCCTACTCC+GGG | 0.536970 | 1.1:+78595530 | None:intergenic |
| AGCGAAGTCAGAGGAAGAAG+AGG | 0.539083 | 1.1:+78595983 | None:intergenic |
| GAGTCTCCACAAGATGAAAG+AGG | 0.544256 | 1.1:+78593699 | None:intergenic |
| CATACCCATGAGCATGGATG+TGG | 0.547051 | 1.1:+78592860 | None:intergenic |
| GATAGAGTGCATCCCGGAGT+AGG | 0.552108 | 1.1:-78595542 | MS.gene76273:intron |
| CGGCAGCAGTGAAATGGTGG+TGG | 0.553704 | 1.1:-78595508 | MS.gene76273:CDS |
| GTGATTCATTTGATTGCACT+GGG | 0.557586 | 1.1:-78595435 | MS.gene76273:CDS |
| TTTCTCGTATAGGGTCATCA+TGG | 0.563735 | 1.1:+78592448 | None:intergenic |
| AGTACACTCCTGGTCTTACC+GGG | 0.564946 | 1.1:-78595350 | MS.gene76273:CDS |
| ACTTATGACAGCCAGATAAG+TGG | 0.565648 | 1.1:+78595188 | None:intergenic |
| ATCATGGAATCGATAGTCCC+TGG | 0.566285 | 1.1:+78592464 | None:intergenic |
| GCATGATTCCCGGTAAGACC+AGG | 0.566292 | 1.1:+78595342 | None:intergenic |
| CCACCAGCAGCCGCATAAAG+CGG | 0.568080 | 1.1:+78595297 | None:intergenic |
| AACATTGATAAGTACACTCC+TGG | 0.568478 | 1.1:-78595360 | MS.gene76273:CDS |
| CAATTCGGCTAGAGATGCAT+GGG | 0.574864 | 1.1:-78593039 | MS.gene76273:CDS |
| TCTTCTTCATGGTGGTAGAG+AGG | 0.577354 | 1.1:-78594002 | MS.gene76273:CDS |
| ATATAGGAGTGCTCGAGCCA+GGG | 0.586115 | 1.1:-78592481 | MS.gene76273:CDS |
| GGGAGTTATTCCAATCAACT+GGG | 0.587121 | 1.1:-78593019 | MS.gene76273:CDS |
| ACAATTCGGCTAGAGATGCA+TGG | 0.589439 | 1.1:-78593040 | MS.gene76273:CDS |
| ACAATCTGGTACCTGAACAT+AGG | 0.589676 | 1.1:+78593652 | None:intergenic |
| CTGTGCATGTTATAGTGTCT+GGG | 0.592316 | 1.1:-78594039 | MS.gene76273:CDS |
| CAAAACCATACCCATGAGCA+TGG | 0.598545 | 1.1:+78592854 | None:intergenic |
| TTATGGCTCATTATTTACTG+CGG | 0.599332 | 1.1:-78593906 | MS.gene76273:CDS |
| ACACGACACTCTCATGACCT+CGG | 0.602868 | 1.1:+78594333 | None:intergenic |
| TATGGTGATAGAGTGCATCC+CGG | 0.611166 | 1.1:-78595548 | MS.gene76273:intron |
| TTTCTTGTTCTTCTTCATGG+TGG | 0.614678 | 1.1:-78594010 | MS.gene76273:CDS |
| GGGCAAATACCTGTCTATGA+CGG | 0.619121 | 1.1:+78595083 | None:intergenic |
| CGTCGGCAGCAGTGAAATGG+TGG | 0.622128 | 1.1:-78595511 | MS.gene76273:CDS |
| GGCTTCAAACTTGAGTGATG+GGG | 0.633313 | 1.1:-78594248 | MS.gene76273:CDS |
| TATCAGGACACTGCGATGGG+AGG | 0.638311 | 1.1:-78593882 | MS.gene76273:intron |
| GAGCACTCCTATATTGAAGT+CGG | 0.639960 | 1.1:+78592490 | None:intergenic |
| GCATCCCGGAGTAGGAGAAG+TGG | 0.641070 | 1.1:-78595534 | MS.gene76273:CDS |
| CGGAGTAGGAGAAGTGGCGT+CGG | 0.644972 | 1.1:-78595528 | MS.gene76273:CDS |
| GCATGTTATAGTGTCTGGGA+TGG | 0.645145 | 1.1:-78594035 | MS.gene76273:CDS |
| TGGTGGCGGCAGAACAATCG+CGG | 0.651883 | 1.1:-78595491 | MS.gene76273:CDS |
| ATGATTCATAACCTGAATGG+CGG | 0.655806 | 1.1:+78595959 | None:intergenic |
| TGACAGCCAGATAAGTGGTG+AGG | 0.678207 | 1.1:+78595193 | None:intergenic |
| AATGGCGGAAGCGAAGTCAG+AGG | 0.682812 | 1.1:+78595974 | None:intergenic |
| GATGGTTTGGAATCTTCCCG+AGG | 0.685332 | 1.1:-78594350 | MS.gene76273:CDS |
| GGAGTTATTCCAATCAACTG+GGG | 0.706705 | 1.1:-78593018 | MS.gene76273:CDS |
| GCTTCAAACTTGAGTGATGG+GGG | 0.710727 | 1.1:-78594247 | MS.gene76273:CDS |
| TGGCGGCAGAACAATCGCGG+CGG | 0.757815 | 1.1:-78595488 | MS.gene76273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATAAACAAATATTAT+TGG | + | chr1.1:78592539-78592558 | None:intergenic | 10.0% |
| !! | TAACATAAACAAATATTATT+GGG | + | chr1.1:78592538-78592557 | None:intergenic | 10.0% |
| !!! | TATAATTTTTACAAAAATCA+TGG | + | chr1.1:78595676-78595695 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr1.1:78593791-78593810 | None:intergenic | 100.0% |
| !! | AAAAGAAAGAAGAAAAAAAA+CGG | + | chr1.1:78593981-78594000 | None:intergenic | 15.0% |
| !! | AGTGAATAATATTATTTGAT+CGG | - | chr1.1:78593433-78593452 | MS.gene76273:intron | 15.0% |
| !! | ATATAAAAAAATCAACAATC+TGG | + | chr1.1:78594804-78594823 | None:intergenic | 15.0% |
| !! | GAAGTTAAAATTTCTAAATT+TGG | - | chr1.1:78592860-78592879 | MS.gene76273:CDS | 15.0% |
| !! | GAATAGTCTAATAATTAAAA+AGG | - | chr1.1:78595195-78595214 | MS.gene76273:CDS | 15.0% |
| !! | TATACAAACATAAATGTATT+TGG | + | chr1.1:78595077-78595096 | None:intergenic | 15.0% |
| !!! | TATTGACTTTTATAAATGTT+TGG | + | chr1.1:78593662-78593681 | None:intergenic | 15.0% |
| !!! | TTTTCATTCTAAAAAAACAA+GGG | + | chr1.1:78592592-78592611 | None:intergenic | 15.0% |
| !!! | TTTTTCATTCTAAAAAAACA+AGG | + | chr1.1:78592593-78592612 | None:intergenic | 15.0% |
| !! | AAAGAAAGAAGAAAAAAAAC+GGG | + | chr1.1:78593980-78593999 | None:intergenic | 20.0% |
| !! | TAAACAAATATTATTGGGTA+CGG | + | chr1.1:78592533-78592552 | None:intergenic | 20.0% |
| !! | TTAATATAAGATGATGAAGT+GGG | - | chr1.1:78593707-78593726 | MS.gene76273:CDS | 20.0% |
| !! | TTTAATATAAGATGATGAAG+TGG | - | chr1.1:78593706-78593725 | MS.gene76273:CDS | 20.0% |
| !!! | AAACAGATTTTTATTCGTTT+GGG | - | chr1.1:78592743-78592762 | MS.gene76273:intron | 20.0% |
| !!! | AAATATGTAACTTTGTTTTC+AGG | - | chr1.1:78595799-78595818 | MS.gene76273:intron | 20.0% |
| !!! | AATTTTTACAAAAATCATGG+TGG | + | chr1.1:78595673-78595692 | None:intergenic | 20.0% |
| !!! | ACTACTAAAACTTCAATTTT+GGG | + | chr1.1:78593817-78593836 | None:intergenic | 20.0% |
| !!! | ATAACTTTTTTGCTATTCAA+GGG | + | chr1.1:78592783-78592802 | None:intergenic | 20.0% |
| !!! | ATCATTTTAATTGCTTTATC+TGG | - | chr1.1:78592563-78592582 | MS.gene76273:CDS | 20.0% |
| !!! | ATTTTTACAAAAATCATGGT+GGG | + | chr1.1:78595672-78595691 | None:intergenic | 20.0% |
| !!! | CGTTAAACATGATTTTTAAT+AGG | - | chr1.1:78595270-78595289 | MS.gene76273:CDS | 20.0% |
| !!! | GTAAAGTTAGTATTTTTATG+TGG | - | chr1.1:78592618-78592637 | MS.gene76273:CDS | 20.0% |
| !!! | TAAACAGATTTTTATTCGTT+TGG | - | chr1.1:78592742-78592761 | MS.gene76273:intron | 20.0% |
| !!! | TCATTTTAATTGCTTTATCT+GGG | - | chr1.1:78592564-78592583 | MS.gene76273:CDS | 20.0% |
| !!! | TTTATAAATGTTTGGATTAG+CGG | + | chr1.1:78593654-78593673 | None:intergenic | 20.0% |
| ! | AAAGGAGATCAAGAATATAT+AGG | - | chr1.1:78595213-78595232 | MS.gene76273:CDS | 25.0% |
| ! | AACACAAACATATGATTTCA+GGG | + | chr1.1:78593379-78593398 | None:intergenic | 25.0% |
| ! | AATAATGTACTTCTTGATAC+GGG | - | chr1.1:78593678-78593697 | MS.gene76273:CDS | 25.0% |
| ! | AGTGATAGAGTTATTATGAT+TGG | - | chr1.1:78595554-78595573 | MS.gene76273:intron | 25.0% |
| ! | ATACTGCAAAGATTTCATTA+AGG | + | chr1.1:78594484-78594503 | None:intergenic | 25.0% |
| ! | CAAACGTGTTTAAAGATTTA+AGG | + | chr1.1:78595625-78595644 | None:intergenic | 25.0% |
| ! | CAATAATGTACTTCTTGATA+CGG | - | chr1.1:78593677-78593696 | MS.gene76273:CDS | 25.0% |
| ! | CATTGCAACTTGAAATTTAT+TGG | + | chr1.1:78593537-78593556 | None:intergenic | 25.0% |
| ! | GTTTAAAGATTTAAGGAGAT+TGG | + | chr1.1:78595618-78595637 | None:intergenic | 25.0% |
| ! | TATTCACTCTAACATATTCA+GGG | + | chr1.1:78593421-78593440 | None:intergenic | 25.0% |
| ! | TCATTCTGTATGTTCTTATT+TGG | - | chr1.1:78594256-78594275 | MS.gene76273:CDS | 25.0% |
| ! | TTATTACATTTCATGCTTAC+AGG | - | chr1.1:78594332-78594351 | MS.gene76273:CDS | 25.0% |
| ! | TTATTCACTCTAACATATTC+AGG | + | chr1.1:78593422-78593441 | None:intergenic | 25.0% |
| !! | AACAGATTTTTATTCGTTTG+GGG | - | chr1.1:78592744-78592763 | MS.gene76273:intron | 25.0% |
| !! | CTACTAAAACTTCAATTTTG+GGG | + | chr1.1:78593816-78593835 | None:intergenic | 25.0% |
| !! | GACTACTAAAACTTCAATTT+TGG | + | chr1.1:78593818-78593837 | None:intergenic | 25.0% |
| !! | TACTAAAACTTCAATTTTGG+GGG | + | chr1.1:78593815-78593834 | None:intergenic | 25.0% |
| !! | TATGCTTTAACAACATCTTT+TGG | - | chr1.1:78594501-78594520 | MS.gene76273:intron | 25.0% |
| !! | TTAATGCATGTTTGAAATCA+CGG | + | chr1.1:78595747-78595766 | None:intergenic | 25.0% |
| !! | TTTCACTCTTTTTCTCTATT+GGG | - | chr1.1:78592506-78592525 | MS.gene76273:CDS | 25.0% |
| !! | TTTTCACTCTTTTTCTCTAT+TGG | - | chr1.1:78592505-78592524 | MS.gene76273:CDS | 25.0% |
| !! | TTTTCTCTGTAAGCTTATTT+TGG | - | chr1.1:78594355-78594374 | MS.gene76273:CDS | 25.0% |
| !!! | AAATTTCAAGTTGCAATGTT+TGG | - | chr1.1:78593539-78593558 | MS.gene76273:intron | 25.0% |
| !!! | ATTTTGTGTTCTAAAAGAAC+AGG | + | chr1.1:78593495-78593514 | None:intergenic | 25.0% |
| !!! | CTAAATTTGGTTGCTTTTTA+TGG | - | chr1.1:78592873-78592892 | MS.gene76273:CDS | 25.0% |
| !!! | GATAACTTTTTTGCTATTCA+AGG | + | chr1.1:78592784-78592803 | None:intergenic | 25.0% |
| !!! | TCTTTTATTTTTGTCTACGA+TGG | - | chr1.1:78593995-78594014 | MS.gene76273:CDS | 25.0% |
| !!! | TTTTGTGTTCTAAAAGAACA+GGG | + | chr1.1:78593494-78593513 | None:intergenic | 25.0% |
| AAACTTACACAACAATGACA+TGG | - | chr1.1:78595324-78595343 | MS.gene76273:CDS | 30.0% | |
| ACTACTGATAATTACTGAGA+AGG | - | chr1.1:78594830-78594849 | MS.gene76273:intron | 30.0% | |
| AGGAATGTGTAAGAATTTGT+CGG | - | chr1.1:78594850-78594869 | MS.gene76273:intron | 30.0% | |
| AGTTATCAATCCACCAAAAA+TGG | + | chr1.1:78595498-78595517 | None:intergenic | 30.0% | |
| ATGATGATTCATAACCTGAA+TGG | + | chr1.1:78592486-78592505 | None:intergenic | 30.0% | |
| ATGTTTGTATAGTCAGTTGT+AGG | - | chr1.1:78595086-78595105 | MS.gene76273:intron | 30.0% | |
| CAACACAAACATATGATTTC+AGG | + | chr1.1:78593380-78593399 | None:intergenic | 30.0% | |
| CCCATCTTTGAATCAATAAA+GGG | + | chr1.1:78595889-78595908 | None:intergenic | 30.0% | |
| CCTTAATAAAGAGAGTAGAT+CGG | - | chr1.1:78595167-78595186 | MS.gene76273:CDS | 30.0% | |
| CTGAAATCATATGTTTGTGT+TGG | - | chr1.1:78593378-78593397 | MS.gene76273:intron | 30.0% | |
| GTGTAAGTTTACCAATTACA+CGG | + | chr1.1:78595314-78595333 | None:intergenic | 30.0% | |
| TAACAAATATGCCTATGTTC+AGG | - | chr1.1:78594776-78594795 | MS.gene76273:intron | 30.0% | |
| TCCCATCTTTGAATCAATAA+AGG | + | chr1.1:78595890-78595909 | None:intergenic | 30.0% | |
| TCTATGTTTACTGCATCAAA+TGG | - | chr1.1:78593737-78593756 | MS.gene76273:CDS | 30.0% | |
| TGGTAAAAGCTTCAACAATT+CGG | - | chr1.1:78595385-78595404 | MS.gene76273:CDS | 30.0% | |
| TTATGGCTCATTATTTACTG+CGG | - | chr1.1:78594533-78594552 | MS.gene76273:intron | 30.0% | |
| TTCCTTACTCCTTACTATAA+AGG | - | chr1.1:78594926-78594945 | MS.gene76273:intron | 30.0% | |
| ! | ACTAAAACTTCAATTTTGGG+GGG | + | chr1.1:78593814-78593833 | None:intergenic | 30.0% |
| ! | CTCTTTATTAAGGCTTTTAC+AGG | + | chr1.1:78595160-78595179 | None:intergenic | 30.0% |
| ! | TCATAAGTGTTTTGTGTTTC+TGG | - | chr1.1:78593266-78593285 | MS.gene76273:intron | 30.0% |
| !! | AATCTCACCTAAGTTGATTT+GGG | - | chr1.1:78595119-78595138 | MS.gene76273:CDS | 30.0% |
| !! | ACCCTTTATTGATTCAAAGA+TGG | - | chr1.1:78595885-78595904 | MS.gene76273:intron | 30.0% |
| !! | CCCTTTATTGATTCAAAGAT+GGG | - | chr1.1:78595886-78595905 | MS.gene76273:intron | 30.0% |
| !! | TCTTTTGGTAGCATTTGTTA+TGG | - | chr1.1:78594516-78594535 | MS.gene76273:intron | 30.0% |
| !! | TTTGCTATTCAAGGGAAATT+GGG | + | chr1.1:78592775-78592794 | None:intergenic | 30.0% |
| !!! | ATGTAACTTTGTTTTCAGGT+TGG | - | chr1.1:78595803-78595822 | MS.gene76273:intron | 30.0% |
| !!! | ATTTTTGGTGGATTGATAAC+TGG | - | chr1.1:78595497-78595516 | MS.gene76273:CDS | 30.0% |
| !!! | TTTTGCTATTCAAGGGAAAT+TGG | + | chr1.1:78592776-78592795 | None:intergenic | 30.0% |
| AAAAAGCTGTGAAGATGGTT+TGG | - | chr1.1:78594076-78594095 | MS.gene76273:CDS | 35.0% | |
| AACATTGATAAGTACACTCC+TGG | - | chr1.1:78593079-78593098 | MS.gene76273:intron | 35.0% | |
| AATTTGTCGGGTAAAGTTCT+TGG | - | chr1.1:78594863-78594882 | MS.gene76273:intron | 35.0% | |
| ACAACTCATTTGCTTTCCAT+AGG | + | chr1.1:78595023-78595042 | None:intergenic | 35.0% | |
| ACAGTACCTCCTTTATAGTA+AGG | + | chr1.1:78594938-78594957 | None:intergenic | 35.0% | |
| ACGGAAATGCAAATAAACAG+CGG | - | chr1.1:78593846-78593865 | MS.gene76273:intron | 35.0% | |
| AGTTTGTAGATGAATGTTGC+AGG | - | chr1.1:78593925-78593944 | MS.gene76273:CDS | 35.0% | |
| ATAAAGCGGCCAATAAGTTT+CGG | + | chr1.1:78593131-78593150 | None:intergenic | 35.0% | |
| ATGATTCATAACCTGAATGG+CGG | + | chr1.1:78592483-78592502 | None:intergenic | 35.0% | |
| ATGTTATATCCGTCATAGAC+AGG | - | chr1.1:78593347-78593366 | MS.gene76273:intron | 35.0% | |
| CACAACAATGACATGGTTAA+TGG | - | chr1.1:78595331-78595350 | MS.gene76273:CDS | 35.0% | |
| CACTTACAGATAGCTGTTAA+TGG | - | chr1.1:78595365-78595384 | MS.gene76273:CDS | 35.0% | |
| CCGATCTACTCTCTTTATTA+AGG | + | chr1.1:78595170-78595189 | None:intergenic | 35.0% | |
| CTCCTTTATAGTAAGGAGTA+AGG | + | chr1.1:78594931-78594950 | None:intergenic | 35.0% | |
| CTGTTTATTTGCATTTCCGT+TGG | + | chr1.1:78593846-78593865 | None:intergenic | 35.0% | |
| CTTACTCCTTACTATAAAGG+AGG | - | chr1.1:78594929-78594948 | MS.gene76273:intron | 35.0% | |
| GAAACCAAGCCACAAAAATT+AGG | + | chr1.1:78593953-78593972 | None:intergenic | 35.0% | |
| GATTTCATTAAGGAGTTAGC+AGG | + | chr1.1:78594474-78594493 | None:intergenic | 35.0% | |
| GGAATGTGTAAGAATTTGTC+GGG | - | chr1.1:78594851-78594870 | MS.gene76273:intron | 35.0% | |
| GTGATTCATTTGATTGCACT+GGG | - | chr1.1:78593004-78593023 | MS.gene76273:CDS | 35.0% | |
| GTGTTTCTTGTTCTTCTTCA+TGG | - | chr1.1:78594426-78594445 | MS.gene76273:intron | 35.0% | |
| TATTGCATGATCCGTGTAAT+TGG | - | chr1.1:78595300-78595319 | MS.gene76273:CDS | 35.0% | |
| TGATTTCCTCTTTCATCTTG+TGG | - | chr1.1:78594734-78594753 | MS.gene76273:intron | 35.0% | |
| TGTGATTCATTTGATTGCAC+TGG | - | chr1.1:78593003-78593022 | MS.gene76273:CDS | 35.0% | |
| TGTGGAAAATACGAGTTAAG+TGG | - | chr1.1:78594955-78594974 | MS.gene76273:intron | 35.0% | |
| TTACACGGATCATGCAATAT+CGG | + | chr1.1:78595299-78595318 | None:intergenic | 35.0% | |
| TTTCATCATTTGAGTAGCCT+GGG | + | chr1.1:78593212-78593231 | None:intergenic | 35.0% | |
| TTTCTTGTTCTTCTTCATGG+TGG | - | chr1.1:78594429-78594448 | MS.gene76273:intron | 35.0% | |
| ! | ATGAGAAAGTATGCATAGAG+CGG | + | chr1.1:78593898-78593917 | None:intergenic | 35.0% |
| ! | CTGTATGTTCTTATTTGGAC+TGG | - | chr1.1:78594261-78594280 | MS.gene76273:CDS | 35.0% |
| ! | TCAAGTTGCAATGTTTGGAT+TGG | - | chr1.1:78593544-78593563 | MS.gene76273:intron | 35.0% |
| ! | TTGCAGGTTCCTAATTTTTG+TGG | - | chr1.1:78593941-78593960 | MS.gene76273:CDS | 35.0% |
| !! | CTAAAACTTCAATTTTGGGG+GGG | + | chr1.1:78593813-78593832 | None:intergenic | 35.0% |
| !! | GAATCTCACCTAAGTTGATT+TGG | - | chr1.1:78595118-78595137 | MS.gene76273:CDS | 35.0% |
| !! | GTTCTTATTTGGACTGGTTA+TGG | - | chr1.1:78594267-78594286 | MS.gene76273:CDS | 35.0% |
| !! | TAAAACTTCAATTTTGGGGG+GGG | + | chr1.1:78593812-78593831 | None:intergenic | 35.0% |
| !! | TACATCACCGACTTCAATAT+AGG | - | chr1.1:78595942-78595961 | MS.gene76273:intron | 35.0% |
| !! | TCGTTTTTCTTTCAGATACG+TGG | - | chr1.1:78594666-78594685 | MS.gene76273:intron | 35.0% |
| !! | TTACTATAAAGGAGGTACTG+TGG | - | chr1.1:78594937-78594956 | MS.gene76273:intron | 35.0% |
| !!! | ACTTTGTTTTCAGGTTGGAT+TGG | - | chr1.1:78595808-78595827 | MS.gene76273:intron | 35.0% |
| !!! | TCATGTTTGCTGTGCTTTTA+TGG | - | chr1.1:78594133-78594152 | MS.gene76273:intron | 35.0% |
| !!! | TCTGTAAGCTTATTTTGGAC+AGG | - | chr1.1:78594360-78594379 | MS.gene76273:CDS | 35.0% |
| AATAACAGCGTCATCAGATG+AGG | + | chr1.1:78594317-78594336 | None:intergenic | 40.0% | |
| ACAATCTGGTACCTGAACAT+AGG | + | chr1.1:78594790-78594809 | None:intergenic | 40.0% | |
| ACACAAGCCCAAATCAACTT+AGG | + | chr1.1:78595129-78595148 | None:intergenic | 40.0% | |
| ACTGTGCATGTTATAGTGTC+TGG | - | chr1.1:78594399-78594418 | MS.gene76273:intron | 40.0% | |
| ACTTATGACAGCCAGATAAG+TGG | + | chr1.1:78593254-78593273 | None:intergenic | 40.0% | |
| AGAAAAGAAGCCATGAGGAT+TGG | + | chr1.1:78594023-78594042 | None:intergenic | 40.0% | |
| AGAGGAAGAAGAGGAAAAAG+AGG | + | chr1.1:78592450-78592469 | None:intergenic | 40.0% | |
| ATGACTTCAAGTGCTACCTA+TGG | - | chr1.1:78595004-78595023 | MS.gene76273:intron | 40.0% | |
| CATTATTTACTGCGGCTATC+AGG | - | chr1.1:78594541-78594560 | MS.gene76273:intron | 40.0% | |
| CCAATAAGTTTCGGTTAACC+CGG | + | chr1.1:78593122-78593141 | None:intergenic | 40.0% | |
| CGGCGAGATTGATAGAATTA+TGG | - | chr1.1:78593567-78593586 | MS.gene76273:intron | 40.0% | |
| CTGTGCATGTTATAGTGTCT+GGG | - | chr1.1:78594400-78594419 | MS.gene76273:intron | 40.0% | |
| CTTCAACGAAATCAGTGTCA+CGG | - | chr1.1:78595704-78595723 | MS.gene76273:intron | 40.0% | |
| CTTGTGGCATATGATTGTTC+AGG | - | chr1.1:78595452-78595471 | MS.gene76273:CDS | 40.0% | |
| CTTTCATCATTTGAGTAGCC+TGG | + | chr1.1:78593213-78593232 | None:intergenic | 40.0% | |
| GAGCACTCCTATATTGAAGT+CGG | + | chr1.1:78595952-78595971 | None:intergenic | 40.0% | |
| GAGGAAGAAGAGGAAAAAGA+GGG | + | chr1.1:78592449-78592468 | None:intergenic | 40.0% | |
| GGAATACACCCAAGTGAAAA+TGG | + | chr1.1:78594910-78594929 | None:intergenic | 40.0% | |
| GGAGTTATTCCAATCAACTG+GGG | - | chr1.1:78595421-78595440 | MS.gene76273:CDS | 40.0% | |
| GGGAGTTATTCCAATCAACT+GGG | - | chr1.1:78595420-78595439 | MS.gene76273:CDS | 40.0% | |
| GTGGTTGTTGAGACTAATTG+AGG | - | chr1.1:78594974-78594993 | MS.gene76273:intron | 40.0% | |
| GTTCTTGGCAGCATCATATT+TGG | - | chr1.1:78594878-78594897 | MS.gene76273:intron | 40.0% | |
| TCTGCAAAAAGCTGTGAAGA+TGG | - | chr1.1:78594071-78594090 | MS.gene76273:CDS | 40.0% | |
| TCTTTCAGATACGTGGACTT+AGG | - | chr1.1:78594673-78594692 | MS.gene76273:intron | 40.0% | |
| TGGCTTCAAACTTGAGTGAT+GGG | - | chr1.1:78594190-78594209 | MS.gene76273:intron | 40.0% | |
| TGGGAGTTATTCCAATCAAC+TGG | - | chr1.1:78595419-78595438 | MS.gene76273:CDS | 40.0% | |
| TTATTTGCATTTCCGTTGGC+AGG | + | chr1.1:78593842-78593861 | None:intergenic | 40.0% | |
| TTCTGACTCTTCAAGAAACC+AGG | + | chr1.1:78592838-78592857 | None:intergenic | 40.0% | |
| TTTCTCGTATAGGGTCATCA+TGG | + | chr1.1:78595994-78596013 | None:intergenic | 40.0% | |
| ! | AACTTATTGGCCGCTTTATG+CGG | - | chr1.1:78593132-78593151 | MS.gene76273:intron | 40.0% |
| ! | AGTTGCAATGTTTGGATTGG+CGG | - | chr1.1:78593547-78593566 | MS.gene76273:intron | 40.0% |
| ! | ATGGACTTGGTTGTTGTTGT+TGG | - | chr1.1:78593183-78593202 | MS.gene76273:intron | 40.0% |
| ! | ATTGCACTGGGATTCCTTTT+GGG | - | chr1.1:78593016-78593035 | MS.gene76273:CDS | 40.0% |
| ! | CTGGACTAACCAGATTTTCT+GGG | - | chr1.1:78593285-78593304 | MS.gene76273:intron | 40.0% |
| ! | GCGGTTAGTTCAGTTTCTTA+AGG | - | chr1.1:78593865-78593884 | MS.gene76273:intron | 40.0% |
| ! | GGTTCCTAATTTTTGTGGCT+TGG | - | chr1.1:78593946-78593965 | MS.gene76273:CDS | 40.0% |
| ! | TCTGGACTAACCAGATTTTC+TGG | - | chr1.1:78593284-78593303 | MS.gene76273:intron | 40.0% |
| ! | TGAGAAAGTATGCATAGAGC+GGG | + | chr1.1:78593897-78593916 | None:intergenic | 40.0% |
| ! | TGGACTAACCAGATTTTCTG+GGG | - | chr1.1:78593286-78593305 | MS.gene76273:intron | 40.0% |
| ! | TGGACTTGGTTGTTGTTGTT+GGG | - | chr1.1:78593184-78593203 | MS.gene76273:intron | 40.0% |
| ! | TTGATAACTGGAACTTGTGC+TGG | - | chr1.1:78595509-78595528 | MS.gene76273:CDS | 40.0% |
| ! | TTTTAGTAGTCTCCTGCCAA+CGG | - | chr1.1:78593827-78593846 | MS.gene76273:intron | 40.0% |
| !! | AAAACTTCAATTTTGGGGGG+GGG | + | chr1.1:78593811-78593830 | None:intergenic | 40.0% |
| !! | AAGTTGATTTGGGCTTGTGT+GGG | - | chr1.1:78595129-78595148 | MS.gene76273:CDS | 40.0% |
| !! | GGTTTCAGCCATTTTCACTT+GGG | - | chr1.1:78594899-78594918 | MS.gene76273:intron | 40.0% |
| !! | GTCATTGACTTTCTTTGACC+TGG | - | chr1.1:78592817-78592836 | MS.gene76273:intron | 40.0% |
| !! | TAAGTTGATTTGGGCTTGTG+TGG | - | chr1.1:78595128-78595147 | MS.gene76273:CDS | 40.0% |
| !! | TGCTTTTATGGATGGCCTTA+TGG | - | chr1.1:78594145-78594164 | MS.gene76273:intron | 40.0% |
| !! | TGGTTTCAGCCATTTTCACT+TGG | - | chr1.1:78594898-78594917 | MS.gene76273:intron | 40.0% |
| !! | TTGCTAATGGGCACCATTTT+TGG | - | chr1.1:78595482-78595501 | MS.gene76273:CDS | 40.0% |
| !!! | ATAGAGGCGTTTTCTCGTAT+AGG | + | chr1.1:78596004-78596023 | None:intergenic | 40.0% |
| !!! | GTTTGCTGTGCTTTTATGGA+TGG | - | chr1.1:78594137-78594156 | MS.gene76273:intron | 40.0% |
| !!! | TAGAGGCGTTTTCTCGTATA+GGG | + | chr1.1:78596003-78596022 | None:intergenic | 40.0% |
| !!! | TCAGGTGCTGTTTTGCTAAT+GGG | - | chr1.1:78595470-78595489 | MS.gene76273:CDS | 40.0% |
| !!! | TGGCATGATGTTTTCTGGTT+AGG | - | chr1.1:78592974-78592993 | MS.gene76273:CDS | 40.0% |
| !!! | TTCAGGTGCTGTTTTGCTAA+TGG | - | chr1.1:78595469-78595488 | MS.gene76273:CDS | 40.0% |
| !!! | TTTTCAGGTTGGATTGGCAA+TGG | - | chr1.1:78595814-78595833 | MS.gene76273:intron | 40.0% |
| ACAATTCGGCTAGAGATGCA+TGG | - | chr1.1:78595399-78595418 | MS.gene76273:CDS | 45.0% | |
| ATCATGGAATCGATAGTCCC+TGG | + | chr1.1:78595978-78595997 | None:intergenic | 45.0% | |
| ATTCCAATCAACTGGGGTTG+AGG | - | chr1.1:78595427-78595446 | MS.gene76273:CDS | 45.0% | |
| CAAAACCATACCCATGAGCA+TGG | + | chr1.1:78595588-78595607 | None:intergenic | 45.0% | |
| CAATTCGGCTAGAGATGCAT+GGG | - | chr1.1:78595400-78595419 | MS.gene76273:CDS | 45.0% | |
| CAGACTTCCATTTACGATGC+TGG | - | chr1.1:78594047-78594066 | MS.gene76273:CDS | 45.0% | |
| CAGCATCGTAAATGGAAGTC+TGG | + | chr1.1:78594049-78594068 | None:intergenic | 45.0% | |
| CCGGGTTAACCGAAACTTAT+TGG | - | chr1.1:78593119-78593138 | MS.gene76273:intron | 45.0% | |
| CGTGGACTTAGGTCAAAGAT+TGG | - | chr1.1:78594684-78594703 | MS.gene76273:intron | 45.0% | |
| GAATTGGGACTGTTCTTGGA+TGG | - | chr1.1:78593164-78593183 | MS.gene76273:intron | 45.0% | |
| GAGTCTCCACAAGATGAAAG+AGG | + | chr1.1:78594743-78594762 | None:intergenic | 45.0% | |
| GATGTAGTGTCTCAGACATC+TGG | + | chr1.1:78595928-78595947 | None:intergenic | 45.0% | |
| GCATGTTATAGTGTCTGGGA+TGG | - | chr1.1:78594404-78594423 | MS.gene76273:intron | 45.0% | |
| GCTTCAAACTTGAGTGATGG+GGG | - | chr1.1:78594192-78594211 | MS.gene76273:intron | 45.0% | |
| GGAGAAGAAAAGAAGCCATG+AGG | + | chr1.1:78594028-78594047 | None:intergenic | 45.0% | |
| GGCTTCAAACTTGAGTGATG+GGG | - | chr1.1:78594191-78594210 | MS.gene76273:intron | 45.0% | |
| GGGCAAATACCTGTCTATGA+CGG | + | chr1.1:78593359-78593378 | None:intergenic | 45.0% | |
| GTGGCTTCAAACTTGAGTGA+TGG | - | chr1.1:78594189-78594208 | MS.gene76273:intron | 45.0% | |
| TACGATGGTTCCAATCCTCA+TGG | - | chr1.1:78594010-78594029 | MS.gene76273:CDS | 45.0% | |
| TATGGTGATAGAGTGCATCC+CGG | - | chr1.1:78592891-78592910 | MS.gene76273:CDS | 45.0% | |
| TCACATCCTCACCACTTATC+TGG | - | chr1.1:78593240-78593259 | MS.gene76273:intron | 45.0% | |
| TCTTCTTCATGGTGGTAGAG+AGG | - | chr1.1:78594437-78594456 | MS.gene76273:intron | 45.0% | |
| TGCAGAACCAGCATCGTAAA+TGG | + | chr1.1:78594057-78594076 | None:intergenic | 45.0% | |
| TGCTGCTCCAAATGACCATA+AGG | + | chr1.1:78594163-78594182 | None:intergenic | 45.0% | |
| TGTTGGATTGCAGAAGCGAT+TGG | - | chr1.1:78593395-78593414 | MS.gene76273:intron | 45.0% | |
| ! | CATGCTCATGGGTATGGTTT+TGG | - | chr1.1:78595586-78595605 | MS.gene76273:intron | 45.0% |
| ! | GACTAACCAGATTTTCTGGG+GGG | - | chr1.1:78593288-78593307 | MS.gene76273:intron | 45.0% |
| ! | GATTGCACTGGGATTCCTTT+TGG | - | chr1.1:78593015-78593034 | MS.gene76273:CDS | 45.0% |
| ! | GGACTAACCAGATTTTCTGG+GGG | - | chr1.1:78593287-78593306 | MS.gene76273:intron | 45.0% |
| ! | TGGAACTTGTGCTGGTGTTT+GGG | - | chr1.1:78595517-78595536 | MS.gene76273:CDS | 45.0% |
| ! | TTATGGTCATTTGGAGCAGC+AGG | - | chr1.1:78594162-78594181 | MS.gene76273:intron | 45.0% |
| ! | TTGCACTGGGATTCCTTTTG+GGG | - | chr1.1:78593017-78593036 | MS.gene76273:CDS | 45.0% |
| !! | AAACTTCAATTTTGGGGGGG+GGG | + | chr1.1:78593810-78593829 | None:intergenic | 45.0% |
| !! | AAGTACACTCCTGGTCTTAC+CGG | - | chr1.1:78593088-78593107 | MS.gene76273:intron | 45.0% |
| !! | CTAATGGGCACCATTTTTGG+TGG | - | chr1.1:78595485-78595504 | MS.gene76273:CDS | 45.0% |
| !! | GTTTGGATTAGCGGTGAGTT+TGG | + | chr1.1:78593645-78593664 | None:intergenic | 45.0% |
| !! | TGGATGGCCTTATGGTCATT+TGG | - | chr1.1:78594153-78594172 | MS.gene76273:intron | 45.0% |
| !!! | TATTAAAATTTAGATTTTAA+TGG | - | chr1.1:78595242-78595261 | MS.gene76273:CDS | 5.0% |
| AAGCAACCCCCCAGAAAATC+TGG | + | chr1.1:78593297-78593316 | None:intergenic | 50.0% | |
| ACACGACACTCTCATGACCT+CGG | + | chr1.1:78594109-78594128 | None:intergenic | 50.0% | |
| AGCGAAGTCAGAGGAAGAAG+AGG | + | chr1.1:78592459-78592478 | None:intergenic | 50.0% | |
| CACATCCATGCTCATGGGTA+TGG | - | chr1.1:78595580-78595599 | MS.gene76273:intron | 50.0% | |
| CACGCAGTGAAGTGATGAGA+AGG | + | chr1.1:78592659-78592678 | None:intergenic | 50.0% | |
| CATACCCATGAGCATGGATG+TGG | + | chr1.1:78595582-78595601 | None:intergenic | 50.0% | |
| GGTGGAATTGGGACTGTTCT+TGG | - | chr1.1:78593160-78593179 | MS.gene76273:intron | 50.0% | |
| TGACAGCCAGATAAGTGGTG+AGG | + | chr1.1:78593249-78593268 | None:intergenic | 50.0% | |
| TGAGACCAAGAACCCCCAAA+AGG | + | chr1.1:78593033-78593052 | None:intergenic | 50.0% | |
| TGGGGGTTCTTGGTCTCAAT+AGG | - | chr1.1:78593035-78593054 | MS.gene76273:CDS | 50.0% | |
| ! | ATTTGGAGCAGCAGGTGTTG+TGG | - | chr1.1:78594170-78594189 | MS.gene76273:intron | 50.0% |
| ! | CTGGAACTTGTGCTGGTGTT+TGG | - | chr1.1:78595516-78595535 | MS.gene76273:CDS | 50.0% |
| ! | GATGGTTTGGAATCTTCCCG+AGG | - | chr1.1:78594089-78594108 | MS.gene76273:intron | 50.0% |
| ! | GGACTGTTCTTGGATGGACT+TGG | - | chr1.1:78593170-78593189 | MS.gene76273:intron | 50.0% |
| ! | GTGTTTGGGCGTGGGTTAAA+TGG | - | chr1.1:78595531-78595550 | MS.gene76273:CDS | 50.0% |
| ! | GTTGTTGTTGTTGGGTTCCC+AGG | - | chr1.1:78593192-78593211 | MS.gene76273:intron | 50.0% |
| ! | TGCACTGGGATTCCTTTTGG+GGG | - | chr1.1:78593018-78593037 | MS.gene76273:CDS | 50.0% |
| !! | AACTTCAATTTTGGGGGGGG+GGG | + | chr1.1:78593809-78593828 | None:intergenic | 50.0% |
| !! | AATATAGGAGTGCTCGAGCC+AGG | - | chr1.1:78595957-78595976 | MS.gene76273:intron | 50.0% |
| !! | AGTACACTCCTGGTCTTACC+GGG | - | chr1.1:78593089-78593108 | MS.gene76273:intron | 50.0% |
| !! | ATATAGGAGTGCTCGAGCCA+GGG | - | chr1.1:78595958-78595977 | MS.gene76273:intron | 50.0% |
| !! | GGATTCCTTTTGGGGGTTCT+TGG | - | chr1.1:78593025-78593044 | MS.gene76273:CDS | 50.0% |
| !! | GGTTGGATTGGCAATGGTTG+TGG | - | chr1.1:78595820-78595839 | MS.gene76273:intron | 50.0% |
| !! | TGGATTGGCAATGGTTGTGG+TGG | - | chr1.1:78595823-78595842 | MS.gene76273:intron | 50.0% |
| ATGCGGCTGCTGGTGGAATT+GGG | - | chr1.1:78593149-78593168 | MS.gene76273:intron | 55.0% | |
| CACGACACTCTCATGACCTC+GGG | + | chr1.1:78594108-78594127 | None:intergenic | 55.0% | |
| GATAGAGTGCATCCCGGAGT+AGG | - | chr1.1:78592897-78592916 | MS.gene76273:CDS | 55.0% | |
| GCATGATTCCCGGTAAGACC+AGG | + | chr1.1:78593100-78593119 | None:intergenic | 55.0% | |
| GGCTATCAGGACACTGCGAT+GGG | - | chr1.1:78594554-78594573 | MS.gene76273:intron | 55.0% | |
| GGCTCCACATCCATGCTCAT+GGG | - | chr1.1:78595575-78595594 | MS.gene76273:intron | 55.0% | |
| GGTCTTACCGGGAATCATGC+CGG | - | chr1.1:78593100-78593119 | MS.gene76273:intron | 55.0% | |
| GGTTAACCCGGCATGATTCC+CGG | + | chr1.1:78593110-78593129 | None:intergenic | 55.0% | |
| GTCTTACCGGGAATCATGCC+GGG | - | chr1.1:78593101-78593120 | MS.gene76273:intron | 55.0% | |
| GTGCCTCAACCCCAGTTGAT+TGG | + | chr1.1:78595433-78595452 | None:intergenic | 55.0% | |
| TATCAGGACACTGCGATGGG+AGG | - | chr1.1:78594557-78594576 | MS.gene76273:intron | 55.0% | |
| TATGCGGCTGCTGGTGGAAT+TGG | - | chr1.1:78593148-78593167 | MS.gene76273:intron | 55.0% | |
| TGACTTCGCTTCCGCCATTC+AGG | - | chr1.1:78592469-78592488 | MS.gene76273:CDS | 55.0% | |
| TGGCTCCACATCCATGCTCA+TGG | - | chr1.1:78595574-78595593 | MS.gene76273:intron | 55.0% | |
| ! | AACTGGGGTTGAGGCACTTG+TGG | - | chr1.1:78595436-78595455 | MS.gene76273:CDS | 55.0% |
| ! | AATGGCGGAAGCGAAGTCAG+AGG | + | chr1.1:78592468-78592487 | None:intergenic | 55.0% |
| ! | GGCGGTGGCATGATGTTTTC+TGG | - | chr1.1:78592969-78592988 | MS.gene76273:CDS | 55.0% |
| ! | TTGTGCTGGTGTTTGGGCGT+GGG | - | chr1.1:78595523-78595542 | MS.gene76273:CDS | 55.0% |
| !! | ACTTCAATTTTGGGGGGGGG+GGG | + | chr1.1:78593808-78593827 | None:intergenic | 55.0% |
| !! | CAGCAGTGAAATGGTGGTGG+CGG | - | chr1.1:78592934-78592953 | MS.gene76273:CDS | 55.0% |
| CCACCAGCAGCCGCATAAAG+CGG | + | chr1.1:78593145-78593164 | None:intergenic | 60.0% | |
| CGACGCCACTTCTCCTACTC+CGG | + | chr1.1:78592913-78592932 | None:intergenic | 60.0% | |
| CGGAGTAGGAGAAGTGGCGT+CGG | - | chr1.1:78592911-78592930 | MS.gene76273:CDS | 60.0% | |
| CGGCAGCAGTGAAATGGTGG+TGG | - | chr1.1:78592931-78592950 | MS.gene76273:CDS | 60.0% | |
| CGGCTATCAGGACACTGCGA+TGG | - | chr1.1:78594553-78594572 | MS.gene76273:intron | 60.0% | |
| CGTCGGCAGCAGTGAAATGG+TGG | - | chr1.1:78592928-78592947 | MS.gene76273:CDS | 60.0% | |
| GACGCCACTTCTCCTACTCC+GGG | + | chr1.1:78592912-78592931 | None:intergenic | 60.0% | |
| GCATCCCGGAGTAGGAGAAG+TGG | - | chr1.1:78592905-78592924 | MS.gene76273:CDS | 60.0% | |
| GCTGGTGGCTTCTTGTGGTG+AGG | - | chr1.1:78594217-78594236 | MS.gene76273:intron | 60.0% | |
| GGTGGCTTCTTGTGGTGAGG+TGG | - | chr1.1:78594220-78594239 | MS.gene76273:intron | 60.0% | |
| ! | ACTTGAGTGATGGGGGACGC+TGG | - | chr1.1:78594199-78594218 | MS.gene76273:intron | 60.0% |
| ! | CTTGTGCTGGTGTTTGGGCG+TGG | - | chr1.1:78595522-78595541 | MS.gene76273:CDS | 60.0% |
| ! | TGGGGGGTTGCTTTCGCTGT+TGG | - | chr1.1:78593304-78593323 | MS.gene76273:intron | 60.0% |
| !! | CTTCAATTTTGGGGGGGGGG+GGG | + | chr1.1:78593807-78593826 | None:intergenic | 60.0% |
| !! | TGGCGTCGGCAGCAGTGAAA+TGG | - | chr1.1:78592925-78592944 | MS.gene76273:CDS | 60.0% |
| !! | TGGTGGCGGCAGAACAATCG+CGG | - | chr1.1:78592948-78592967 | MS.gene76273:CDS | 60.0% |
| !! | TTCAATTTTGGGGGGGGGGG+GGG | + | chr1.1:78593806-78593825 | None:intergenic | 60.0% |
| CCGCTTTATGCGGCTGCTGG+TGG | - | chr1.1:78593142-78593161 | MS.gene76273:intron | 65.0% | |
| GGGACGCTGGTGGCTTCTTG+TGG | - | chr1.1:78594212-78594231 | MS.gene76273:intron | 65.0% | |
| TGGCGGCAGAACAATCGCGG+CGG | - | chr1.1:78592951-78592970 | MS.gene76273:CDS | 65.0% | |
| ! | TGAGTGATGGGGGACGCTGG+TGG | - | chr1.1:78594202-78594221 | MS.gene76273:intron | 65.0% |
| ! | TGGCCGCTTTATGCGGCTGC+TGG | - | chr1.1:78593139-78593158 | MS.gene76273:intron | 65.0% |
| !! | TCAATTTTGGGGGGGGGGGG+GGG | + | chr1.1:78593805-78593824 | None:intergenic | 65.0% |
| CGGCAGAACAATCGCGGCGG+TGG | - | chr1.1:78592954-78592973 | MS.gene76273:CDS | 70.0% | |
| !! | AATTTTGGGGGGGGGGGGGG+GGG | + | chr1.1:78593803-78593822 | None:intergenic | 70.0% |
| !! | CAATTTTGGGGGGGGGGGGG+GGG | + | chr1.1:78593804-78593823 | None:intergenic | 70.0% |
| !! | ATTTTGGGGGGGGGGGGGGG+GGG | + | chr1.1:78593802-78593821 | None:intergenic | 75.0% |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | + | chr1.1:78593801-78593820 | None:intergenic | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | + | chr1.1:78593800-78593819 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr1.1:78593799-78593818 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr1.1:78593798-78593817 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78592434 | 78596027 | 78592434 | ID=MS.gene76273 |
| chr1.1 | mRNA | 78592434 | 78596027 | 78592434 | ID=MS.gene76273.t1;Parent=MS.gene76273 |
| chr1.1 | exon | 78595971 | 78596027 | 78595971 | ID=MS.gene76273.t1.exon1;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78595971 | 78596027 | 78595971 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| chr1.1 | exon | 78595093 | 78595559 | 78595093 | ID=MS.gene76273.t1.exon2;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78595093 | 78595559 | 78595093 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| chr1.1 | exon | 78594228 | 78594411 | 78594228 | ID=MS.gene76273.t1.exon3;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78594228 | 78594411 | 78594228 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| chr1.1 | exon | 78593883 | 78594107 | 78593883 | ID=MS.gene76273.t1.exon4;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78593883 | 78594107 | 78593883 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| chr1.1 | exon | 78593664 | 78593780 | 78593664 | ID=MS.gene76273.t1.exon5;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78593664 | 78593780 | 78593664 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| chr1.1 | exon | 78592854 | 78593087 | 78592854 | ID=MS.gene76273.t1.exon6;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78592854 | 78593087 | 78592854 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| chr1.1 | exon | 78592434 | 78592640 | 78592434 | ID=MS.gene76273.t1.exon7;Parent=MS.gene76273.t1 |
| chr1.1 | CDS | 78592434 | 78592640 | 78592434 | ID=cds.MS.gene76273.t1;Parent=MS.gene76273.t1 |
| Gene Sequence |
| Protein sequence |
