Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76419.t1 | XP_013446398.1 | 100 | 205 | 0 | 0 | 24 | 228 | 22 | 226 | 1.60E-114 | 422.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76419.t1 | Q9LFF9 | 85.2 | 196 | 28 | 1 | 33 | 228 | 22 | 216 | 3.1e-95 | 349.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76419.t1 | I3SMR6 | 100.0 | 205 | 0 | 0 | 24 | 228 | 22 | 226 | 1.1e-114 | 422.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene76419 | 0.819169 | 1.34E-52 | -1.69E-46 |
| MS.gene05081 | MS.gene76419 | 0.859144 | 5.07E-63 | -1.69E-46 |
| MS.gene051244 | MS.gene76419 | 0.837175 | 6.07E-57 | -1.69E-46 |
| MS.gene051552 | MS.gene76419 | -0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene76419 | 0.823916 | 1.07E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene76419 | 0.811486 | 6.84E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene76419 | 0.805748 | 1.15E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene76419 | 0.834948 | 2.23E-56 | -1.69E-46 |
| MS.gene054343 | MS.gene76419 | 0.881529 | 2.23E-70 | -1.69E-46 |
| MS.gene054344 | MS.gene76419 | 0.852052 | 5.94E-61 | -1.69E-46 |
| MS.gene054884 | MS.gene76419 | -0.859783 | 3.26E-63 | -1.69E-46 |
| MS.gene055206 | MS.gene76419 | 0.811598 | 6.46E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene76419 | 0.82303 | 1.72E-53 | -1.69E-46 |
| MS.gene056351 | MS.gene76419 | 0.817257 | 3.62E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene76419 | 0.867169 | 1.67E-65 | -1.69E-46 |
| MS.gene056664 | MS.gene76419 | 0.854188 | 1.45E-61 | -1.69E-46 |
| MS.gene057196 | MS.gene76419 | 0.863503 | 2.38E-64 | -1.69E-46 |
| MS.gene057332 | MS.gene76419 | 0.862247 | 5.80E-64 | -1.69E-46 |
| MS.gene057658 | MS.gene76419 | 0.814081 | 1.85E-51 | -1.69E-46 |
| MS.gene058418 | MS.gene76419 | -0.806772 | 6.99E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene76419 | 0.872693 | 2.61E-67 | -1.69E-46 |
| MS.gene058838 | MS.gene76419 | 0.832818 | 7.61E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene76419 | 0.839178 | 1.85E-57 | -1.69E-46 |
| MS.gene05914 | MS.gene76419 | 0.836238 | 1.05E-56 | -1.69E-46 |
| MS.gene059512 | MS.gene76419 | 0.878063 | 3.80E-69 | -1.69E-46 |
| MS.gene059855 | MS.gene76419 | -0.804152 | 2.48E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene76419 | 0.866282 | 3.19E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76419.t1 | MTR_8g077180 | 98.246 | 228 | 2 | 1 | 1 | 228 | 1 | 226 | 1.25e-166 | 458 |
| MS.gene76419.t1 | MTR_5g020840 | 85.714 | 196 | 27 | 1 | 33 | 228 | 19 | 213 | 6.36e-127 | 357 |
| MS.gene76419.t1 | MTR_1g068810 | 75.000 | 228 | 53 | 2 | 1 | 228 | 25 | 248 | 4.73e-124 | 352 |
| MS.gene76419.t1 | MTR_1g068810 | 75.000 | 228 | 53 | 2 | 1 | 228 | 29 | 252 | 5.44e-124 | 352 |
| MS.gene76419.t1 | MTR_1g068810 | 75.000 | 228 | 53 | 2 | 1 | 228 | 1 | 224 | 1.39e-123 | 349 |
| MS.gene76419.t1 | MTR_1g068810 | 80.288 | 208 | 37 | 2 | 21 | 228 | 26 | 229 | 1.47e-123 | 350 |
| MS.gene76419.t1 | MTR_1g068810 | 78.505 | 214 | 42 | 2 | 15 | 228 | 7 | 216 | 4.40e-123 | 348 |
| MS.gene76419.t1 | MTR_8g024050 | 80.296 | 203 | 39 | 1 | 26 | 228 | 56 | 257 | 7.46e-123 | 349 |
| MS.gene76419.t1 | MTR_7g118340 | 81.000 | 200 | 37 | 1 | 29 | 228 | 21 | 219 | 9.42e-122 | 345 |
| MS.gene76419.t1 | MTR_1g068810 | 66.797 | 256 | 53 | 3 | 1 | 228 | 29 | 280 | 9.71e-118 | 337 |
| MS.gene76419.t1 | MTR_1g068810 | 70.763 | 236 | 37 | 3 | 21 | 228 | 13 | 244 | 6.06e-117 | 333 |
| MS.gene76419.t1 | MTR_1g096640 | 76.442 | 208 | 38 | 3 | 8 | 215 | 6 | 202 | 3.06e-114 | 326 |
| MS.gene76419.t1 | MTR_1g068810 | 71.300 | 223 | 32 | 3 | 21 | 215 | 13 | 231 | 4.05e-111 | 318 |
| MS.gene76419.t1 | MTR_8g024050 | 84.568 | 162 | 24 | 1 | 26 | 187 | 11 | 171 | 4.69e-102 | 294 |
| MS.gene76419.t1 | MTR_1g112450 | 67.308 | 52 | 15 | 1 | 147 | 196 | 63 | 114 | 1.29e-17 | 77.8 |
| MS.gene76419.t1 | MTR_2g010430 | 31.696 | 224 | 114 | 9 | 6 | 197 | 33 | 249 | 6.17e-17 | 78.2 |
| MS.gene76419.t1 | MTR_1g112430 | 89.286 | 28 | 3 | 0 | 148 | 175 | 39 | 66 | 2.94e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76419.t1 | AT3G53620 | 80.189 | 212 | 38 | 2 | 17 | 228 | 9 | 216 | 7.73e-125 | 352 |
| MS.gene76419.t1 | AT1G01050 | 81.000 | 200 | 37 | 1 | 29 | 228 | 14 | 212 | 3.14e-123 | 348 |
| MS.gene76419.t1 | AT1G01050 | 81.000 | 200 | 37 | 1 | 29 | 228 | 14 | 212 | 3.14e-123 | 348 |
| MS.gene76419.t1 | AT2G46860 | 75.455 | 220 | 48 | 2 | 9 | 228 | 3 | 216 | 2.90e-121 | 343 |
| MS.gene76419.t1 | AT2G18230 | 79.500 | 200 | 40 | 1 | 29 | 228 | 20 | 218 | 7.21e-119 | 337 |
| MS.gene76419.t1 | AT4G01480 | 78.000 | 200 | 43 | 1 | 29 | 228 | 18 | 216 | 2.45e-117 | 333 |
| MS.gene76419.t1 | AT4G01480 | 78.000 | 200 | 43 | 1 | 29 | 228 | 18 | 216 | 2.45e-117 | 333 |
| MS.gene76419.t1 | AT5G09650 | 31.937 | 191 | 105 | 6 | 29 | 197 | 72 | 259 | 6.02e-17 | 78.2 |
Find 52 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTCATTGTTGTTAT+TGG | 0.218964 | 8.1:-30534023 | None:intergenic |
| TTCCTTCGTGCCCGTGCTAT+TGG | 0.251156 | 8.1:+30535381 | MS.gene76419:CDS |
| TCATCTTCACAAAGGGTTCT+TGG | 0.252123 | 8.1:-30535204 | None:intergenic |
| CAAGAAAAGTGGACTTATTA+AGG | 0.286810 | 8.1:+30534526 | MS.gene76419:CDS |
| TTGTTGTAGGTGGTTGAAAT+TGG | 0.355510 | 8.1:+30534473 | MS.gene76419:intron |
| AGCAGCAGCATCTTTCTTAT+CGG | 0.367101 | 8.1:-30534140 | None:intergenic |
| CTTTCATTCAACGCAACAAC+TGG | 0.383599 | 8.1:-30534100 | None:intergenic |
| CTATATGCTGCTTATGTAGT+TGG | 0.409956 | 8.1:+30536560 | MS.gene76419:CDS |
| TGAAATTAGAAGATTCTTTG+AGG | 0.414965 | 8.1:+30536194 | MS.gene76419:CDS |
| CTTATGTAGTTGGAAACTTA+AGG | 0.419658 | 8.1:+30536570 | MS.gene76419:CDS |
| TCCTTGTAATGGCGGTACTC+AGG | 0.424425 | 8.1:-30536141 | None:intergenic |
| GTTGTCTATCCACATAACTA+TGG | 0.433655 | 8.1:+30535174 | MS.gene76419:CDS |
| ACCAGCTGAAGCTGCTGTTA+AGG | 0.443366 | 8.1:+30536412 | MS.gene76419:CDS |
| AAGCAAGGTTAAGTATGAAC+TGG | 0.446810 | 8.1:+30534502 | MS.gene76419:CDS |
| CCATGGCATGACTTAGAGAT+TGG | 0.459125 | 8.1:+30534166 | MS.gene76419:CDS |
| GCCTTAACAGCAGCTTCAGC+TGG | 0.472264 | 8.1:-30536413 | None:intergenic |
| GCTCCTTGATGTCCTTGTAA+TGG | 0.493887 | 8.1:-30536152 | None:intergenic |
| TTACTACCTGCATCAGAACT+AGG | 0.505517 | 8.1:-30535242 | None:intergenic |
| TGAAAGAATACTTTCTTCGA+TGG | 0.509717 | 8.1:+30534117 | MS.gene76419:CDS |
| GGGATCTTCATCTTCACAAA+GGG | 0.509751 | 8.1:-30535211 | None:intergenic |
| GCTGATTAACTTAGGTTGAT+CGG | 0.512599 | 8.1:+30535136 | MS.gene76419:intron |
| TTGAAAACAGATGGAGCTCC+TGG | 0.514131 | 8.1:-30534293 | None:intergenic |
| CCCTGAGTACCGCCATTACA+AGG | 0.516953 | 8.1:+30536140 | MS.gene76419:CDS |
| CTTACACAATTGAAAACAGA+TGG | 0.534311 | 8.1:-30534302 | None:intergenic |
| GAATAGGAGCCTGTGATACC+TGG | 0.543718 | 8.1:+30535354 | MS.gene76419:intron |
| CCTTGTAATGGCGGTACTCA+GGG | 0.545314 | 8.1:-30536140 | None:intergenic |
| TTGTGAAGATGAAGATCCCT+TGG | 0.546662 | 8.1:+30535215 | MS.gene76419:CDS |
| AAGATGCTGCTGCTCATCCA+TGG | 0.549543 | 8.1:+30534149 | MS.gene76419:CDS |
| GGATGTCCTAGTTCTGATGC+AGG | 0.551205 | 8.1:+30535236 | MS.gene76419:CDS |
| TATGAACTGGACAAGAAAAG+TGG | 0.554656 | 8.1:+30534515 | MS.gene76419:CDS |
| CCAATCTCTAAGTCATGCCA+TGG | 0.565311 | 8.1:-30534166 | None:intergenic |
| TGAAATTGGCAAAGGAAGCA+AGG | 0.565798 | 8.1:+30534487 | MS.gene76419:CDS |
| GGAATAAAACCATAGTTATG+TGG | 0.568906 | 8.1:-30535183 | None:intergenic |
| AATCCTGTCACAGGGAGAGA+AGG | 0.570938 | 8.1:+30536086 | MS.gene76419:intron |
| TTTCAGCAAGCCTGTGTGGA+GGG | 0.579237 | 8.1:-30536176 | None:intergenic |
| AGGAAACAACCAGGTATCAC+AGG | 0.592281 | 8.1:-30535363 | None:intergenic |
| AGGCATCAATCCAATAGCAC+GGG | 0.596445 | 8.1:-30535391 | None:intergenic |
| CATCAGAACTAGGACATCCA+AGG | 0.602800 | 8.1:-30535232 | None:intergenic |
| TAGGCATCAATCCAATAGCA+CGG | 0.604153 | 8.1:-30535392 | None:intergenic |
| ATCCAATAGCACGGGCACGA+AGG | 0.604284 | 8.1:-30535383 | None:intergenic |
| CTAATTTCAGCAAGCCTGTG+TGG | 0.605088 | 8.1:-30536180 | None:intergenic |
| CCGCCATTACAAGGACATCA+AGG | 0.609112 | 8.1:+30536149 | MS.gene76419:CDS |
| AGGGATCTTCATCTTCACAA+AGG | 0.609244 | 8.1:-30535212 | None:intergenic |
| TCATTCAACGCAACAACTGG+AGG | 0.618816 | 8.1:-30534097 | None:intergenic |
| TAGGTGGTTGAAATTGGCAA+AGG | 0.622579 | 8.1:+30534479 | MS.gene76419:intron |
| ATTTCAGCAAGCCTGTGTGG+AGG | 0.626630 | 8.1:-30536177 | None:intergenic |
| CCTTGATGTCCTTGTAATGG+CGG | 0.630944 | 8.1:-30536149 | None:intergenic |
| GAACAAAATAGTCAATGTTG+AGG | 0.634181 | 8.1:+30536382 | MS.gene76419:CDS |
| ATCAGAACTAGGACATCCAA+GGG | 0.638473 | 8.1:-30535231 | None:intergenic |
| TCAAGGAGCTCCCTCCACAC+AGG | 0.645382 | 8.1:+30536166 | MS.gene76419:CDS |
| CGGGCACGAAGGAAACAACC+AGG | 0.651968 | 8.1:-30535372 | None:intergenic |
| ATTGATGCCTATGATTGACC+AGG | 0.665376 | 8.1:+30535404 | MS.gene76419:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTGAAAAGTTATAAT+TGG | - | chr8.1:30534569-30534588 | None:intergenic | 15.0% |
| !! | ATGATTGAAAAGTTATAATT+GGG | - | chr8.1:30534568-30534587 | None:intergenic | 15.0% |
| !!! | ATTTTCTTAAATCATTTGTT+AGG | + | chr8.1:30534975-30534994 | MS.gene76419:intron | 15.0% |
| !! | AAAATATCAGATACAATCTA+GGG | - | chr8.1:30535544-30535563 | None:intergenic | 20.0% |
| !! | AAACTTAGACATGTAAAATA+AGG | - | chr8.1:30534735-30534754 | None:intergenic | 20.0% |
| !! | ATAAATCATCTATGAACATA+TGG | - | chr8.1:30536262-30536281 | None:intergenic | 20.0% |
| !! | ATGAATCATTTGATCATTAA+TGG | - | chr8.1:30536491-30536510 | None:intergenic | 20.0% |
| !! | ATTGGTTATGTTTAATGTTT+AGG | + | chr8.1:30534766-30534785 | MS.gene76419:intron | 20.0% |
| !! | GTTTCATTTATATTATAGAC+AGG | + | chr8.1:30534799-30534818 | MS.gene76419:intron | 20.0% |
| !! | TAAAATATCAGATACAATCT+AGG | - | chr8.1:30535545-30535564 | None:intergenic | 20.0% |
| !! | TCCTGAATTTATGAAAATAA+TGG | - | chr8.1:30534273-30534292 | None:intergenic | 20.0% |
| !!! | AAATGAATCAACCATATTTT+CGG | - | chr8.1:30534606-30534625 | None:intergenic | 20.0% |
| !!! | ACCATTATTTTCATAAATTC+AGG | + | chr8.1:30534269-30534288 | MS.gene76419:intron | 20.0% |
| !!! | TAAGTTTTTAGGAGTAATAT+TGG | + | chr8.1:30534748-30534767 | MS.gene76419:intron | 20.0% |
| !!! | TTGAAACTTGTATTTTGAAT+AGG | + | chr8.1:30535338-30535357 | MS.gene76419:intron | 20.0% |
| !!! | TTTTACATGTCTAAGTTTTT+AGG | + | chr8.1:30534737-30534756 | MS.gene76419:intron | 20.0% |
| ! | AAACATTATCTACATAAAGC+AGG | - | chr8.1:30535060-30535079 | None:intergenic | 25.0% |
| ! | AAGAGTAATATGATTGGAAT+AGG | + | chr8.1:30535621-30535640 | MS.gene76419:intron | 25.0% |
| ! | AATTCACTTTACACCATTAA+TGG | - | chr8.1:30534450-30534469 | None:intergenic | 25.0% |
| ! | ACTCTTAAGCTAAAATTGTA+AGG | - | chr8.1:30535607-30535626 | None:intergenic | 25.0% |
| ! | ATTCACTTTACACCATTAAT+GGG | - | chr8.1:30534449-30534468 | None:intergenic | 25.0% |
| ! | ATTTGACAGAATTGTAGAAA+TGG | - | chr8.1:30534680-30534699 | None:intergenic | 25.0% |
| ! | CATTTGATGCGAAAATATAA+AGG | + | chr8.1:30534621-30534640 | MS.gene76419:intron | 25.0% |
| ! | CTCTTAAGCTAAAATTGTAA+GGG | - | chr8.1:30535606-30535625 | None:intergenic | 25.0% |
| ! | GTAAGGGATTAAAATGTTAA+TGG | - | chr8.1:30535590-30535609 | None:intergenic | 25.0% |
| ! | TAATCTTCATTTCAAATCAC+AGG | - | chr8.1:30535516-30535535 | None:intergenic | 25.0% |
| ! | TAGCTTAAGAGTAATATGAT+TGG | + | chr8.1:30535615-30535634 | MS.gene76419:intron | 25.0% |
| ! | TGAAATTAGAAGATTCTTTG+AGG | + | chr8.1:30536194-30536213 | MS.gene76419:CDS | 25.0% |
| !! | AAACGAAGCTTTAATAAATG+TGG | + | chr8.1:30534392-30534411 | MS.gene76419:intron | 25.0% |
| !! | GCTTTATGTAGATAATGTTT+TGG | + | chr8.1:30535060-30535079 | MS.gene76419:intron | 25.0% |
| !! | TTCTTGTTCATTGTTGTTAT+TGG | - | chr8.1:30534026-30534045 | None:intergenic | 25.0% |
| !!! | ATAAAGGCTGTTTCTTTTAA+GGG | + | chr8.1:30534637-30534656 | MS.gene76419:intron | 25.0% |
| !!! | CAATGGTAAAAGCATTTAAA+GGG | - | chr8.1:30536295-30536314 | None:intergenic | 25.0% |
| !!! | CTAGTTTTAAAGCTAGTTTA+TGG | + | chr8.1:30535276-30535295 | MS.gene76419:intron | 25.0% |
| !!! | TATAAAGGCTGTTTCTTTTA+AGG | + | chr8.1:30534636-30534655 | MS.gene76419:intron | 25.0% |
| !!! | TCAATGGTAAAAGCATTTAA+AGG | - | chr8.1:30536296-30536315 | None:intergenic | 25.0% |
| AAAGTGAATTCTGTTGTTGT+AGG | + | chr8.1:30534460-30534479 | MS.gene76419:intron | 30.0% | |
| AAATTGTTGCACGCATTATT+TGG | + | chr8.1:30535691-30535710 | MS.gene76419:intron | 30.0% | |
| AATAGCACTAACAGAATCAA+TGG | - | chr8.1:30536312-30536331 | None:intergenic | 30.0% | |
| AATTATACTTCAACTCTACG+TGG | + | chr8.1:30535486-30535505 | MS.gene76419:intron | 30.0% | |
| AGTTCTTCATTGCAAATAAC+AGG | - | chr8.1:30536227-30536246 | None:intergenic | 30.0% | |
| ATATAGATCCCTGCAAAAAA+GGG | - | chr8.1:30536546-30536565 | None:intergenic | 30.0% | |
| CAAATACTTTGAATGCATTG+TGG | + | chr8.1:30534842-30534861 | MS.gene76419:intron | 30.0% | |
| CCAATGAGAGTAAAAGAAAA+TGG | + | chr8.1:30535660-30535679 | MS.gene76419:intron | 30.0% | |
| CTCAATAGTTATTGAGCTAT+AGG | + | chr8.1:30535012-30535031 | MS.gene76419:intron | 30.0% | |
| CTTACACAATTGAAAACAGA+TGG | - | chr8.1:30534305-30534324 | None:intergenic | 30.0% | |
| CTTATGTAGTTGGAAACTTA+AGG | + | chr8.1:30536570-30536589 | MS.gene76419:CDS | 30.0% | |
| GAACAAAATAGTCAATGTTG+AGG | + | chr8.1:30536382-30536401 | MS.gene76419:CDS | 30.0% | |
| GGAATAAAACCATAGTTATG+TGG | - | chr8.1:30535186-30535205 | None:intergenic | 30.0% | |
| TAACATTTCTGTCCCATTAA+TGG | + | chr8.1:30534434-30534453 | MS.gene76419:intron | 30.0% | |
| TAAGGACACACAACATATAT+GGG | - | chr8.1:30536335-30536354 | None:intergenic | 30.0% | |
| TATTGAGCTATAGGATGTTT+CGG | + | chr8.1:30535021-30535040 | MS.gene76419:intron | 30.0% | |
| TATTTGGCAATACCATTAGA+GGG | + | chr8.1:30535707-30535726 | MS.gene76419:intron | 30.0% | |
| TGAAAGAATACTTTCTTCGA+TGG | + | chr8.1:30534117-30534136 | MS.gene76419:CDS | 30.0% | |
| TTAAGGACACACAACATATA+TGG | - | chr8.1:30536336-30536355 | None:intergenic | 30.0% | |
| TTATTTGGCAATACCATTAG+AGG | + | chr8.1:30535706-30535725 | MS.gene76419:intron | 30.0% | |
| TTCATCTGATTCCGAAAATA+TGG | + | chr8.1:30534592-30534611 | MS.gene76419:intron | 30.0% | |
| ! | ATTTTCATAAATTCAGGACC+AGG | + | chr8.1:30534275-30534294 | MS.gene76419:intron | 30.0% |
| ! | CAAGAAAAGTGGACTTATTA+AGG | + | chr8.1:30534526-30534545 | MS.gene76419:CDS | 30.0% |
| ! | CCATTTTCTTTTACTCTCAT+TGG | - | chr8.1:30535663-30535682 | None:intergenic | 30.0% |
| !! | ATGCTTTGACTTTTCCAATT+TGG | + | chr8.1:30535990-30536009 | MS.gene76419:intron | 30.0% |
| !! | TAAAAGCATTTAAAGGGTCA+TGG | - | chr8.1:30536289-30536308 | None:intergenic | 30.0% |
| !! | TGCTTTGACTTTTCCAATTT+GGG | + | chr8.1:30535991-30536010 | MS.gene76419:intron | 30.0% |
| !! | TTAATGTTTAGGTTGCAAAG+TGG | + | chr8.1:30534777-30534796 | MS.gene76419:intron | 30.0% |
| !!! | GTAGATAATGTTTTGGTTTC+TGG | + | chr8.1:30535067-30535086 | MS.gene76419:intron | 30.0% |
| AACAGCTTAAGCTTATGAGT+AGG | - | chr8.1:30535759-30535778 | None:intergenic | 35.0% | |
| AAGCAAGGTTAAGTATGAAC+TGG | + | chr8.1:30534502-30534521 | MS.gene76419:CDS | 35.0% | |
| AATACCATTAGAGGGATCAA+CGG | + | chr8.1:30535715-30535734 | MS.gene76419:intron | 35.0% | |
| ACAGATAAAAGCGAATGCAA+TGG | + | chr8.1:30535966-30535985 | MS.gene76419:intron | 35.0% | |
| AGCTATGTACTTCAAATCGA+AGG | + | chr8.1:30534883-30534902 | MS.gene76419:intron | 35.0% | |
| CATATAGATCCCTGCAAAAA+AGG | - | chr8.1:30536547-30536566 | None:intergenic | 35.0% | |
| CATATTTCAAGCACCCAAAT+TGG | - | chr8.1:30536007-30536026 | None:intergenic | 35.0% | |
| CTGAAGCATAGCTAACAAAT+GGG | + | chr8.1:30535114-30535133 | MS.gene76419:intron | 35.0% | |
| GAGTAAAAGAAAATGGTGCA+AGG | + | chr8.1:30535667-30535686 | MS.gene76419:intron | 35.0% | |
| GGAAAAGTTAAAGCATGTCA+TGG | - | chr8.1:30536058-30536077 | None:intergenic | 35.0% | |
| GTTGTCTATCCACATAACTA+TGG | + | chr8.1:30535174-30535193 | MS.gene76419:CDS | 35.0% | |
| TATAGATCCCTGCAAAAAAG+GGG | - | chr8.1:30536545-30536564 | None:intergenic | 35.0% | |
| TATGAACTGGACAAGAAAAG+TGG | + | chr8.1:30534515-30534534 | MS.gene76419:CDS | 35.0% | |
| TTGTCTAGTGTGGAAAGTTA+AGG | - | chr8.1:30536353-30536372 | None:intergenic | 35.0% | |
| TTGTTGTAGGTGGTTGAAAT+TGG | + | chr8.1:30534473-30534492 | MS.gene76419:intron | 35.0% | |
| TTTGAATAATGCAACCAGCA+TGG | + | chr8.1:30535816-30535835 | MS.gene76419:intron | 35.0% | |
| ! | ACTTTTACCTGGTCAATCAT+AGG | - | chr8.1:30535414-30535433 | None:intergenic | 35.0% |
| ! | AGAATGTCTGGTTCATGATT+TGG | - | chr8.1:30535880-30535899 | None:intergenic | 35.0% |
| ! | CATTTGTTAGGTGTCTTTGT+CGG | + | chr8.1:30534987-30535006 | MS.gene76419:intron | 35.0% |
| ! | CTATATGCTGCTTATGTAGT+TGG | + | chr8.1:30536560-30536579 | MS.gene76419:CDS | 35.0% |
| ! | GTAAAATAAGGTGCTTGCAA+AGG | - | chr8.1:30534723-30534742 | None:intergenic | 35.0% |
| ! | TCTGAAGCATAGCTAACAAA+TGG | + | chr8.1:30535113-30535132 | MS.gene76419:intron | 35.0% |
| !! | ACAAATGGGCTGATTAACTT+AGG | + | chr8.1:30535128-30535147 | MS.gene76419:intron | 35.0% |
| !! | GCTGATTAACTTAGGTTGAT+CGG | + | chr8.1:30535136-30535155 | MS.gene76419:intron | 35.0% |
| !! | GTGTTTGGTGTTCAATACAT+CGG | + | chr8.1:30534907-30534926 | MS.gene76419:intron | 35.0% |
| !! | TAGTAAGCTTCTAGAATGTC+TGG | - | chr8.1:30535892-30535911 | None:intergenic | 35.0% |
| ACAAAGCATAGTAGCTCACA+TGG | - | chr8.1:30536450-30536469 | None:intergenic | 40.0% | |
| AGCAGCAGCATCTTTCTTAT+CGG | - | chr8.1:30534143-30534162 | None:intergenic | 40.0% | |
| AGGGATCTTCATCTTCACAA+AGG | - | chr8.1:30535215-30535234 | None:intergenic | 40.0% | |
| ATACCATTAGAGGGATCAAC+GGG | + | chr8.1:30535716-30535735 | MS.gene76419:intron | 40.0% | |
| ATCAGAACTAGGACATCCAA+GGG | - | chr8.1:30535234-30535253 | None:intergenic | 40.0% | |
| ATTGATGCCTATGATTGACC+AGG | + | chr8.1:30535404-30535423 | MS.gene76419:CDS | 40.0% | |
| CTCATTCTTCTTGTCTAGTG+TGG | - | chr8.1:30536363-30536382 | None:intergenic | 40.0% | |
| CTGAATGCAATCACATGTGT+TGG | - | chr8.1:30534947-30534966 | None:intergenic | 40.0% | |
| CTTTCATTCAACGCAACAAC+TGG | - | chr8.1:30534103-30534122 | None:intergenic | 40.0% | |
| GACAAAAGTTTGATCCATGC+TGG | - | chr8.1:30535833-30535852 | None:intergenic | 40.0% | |
| GGGATCTTCATCTTCACAAA+GGG | - | chr8.1:30535214-30535233 | None:intergenic | 40.0% | |
| GTGAATTCTGTTGTTGTAGG+TGG | + | chr8.1:30534463-30534482 | MS.gene76419:intron | 40.0% | |
| TAGGCATCAATCCAATAGCA+CGG | - | chr8.1:30535395-30535414 | None:intergenic | 40.0% | |
| TAGGTGGTTGAAATTGGCAA+AGG | + | chr8.1:30534479-30534498 | MS.gene76419:intron | 40.0% | |
| TCATCTTCACAAAGGGTTCT+TGG | - | chr8.1:30535207-30535226 | None:intergenic | 40.0% | |
| TGAAATTGGCAAAGGAAGCA+AGG | + | chr8.1:30534487-30534506 | MS.gene76419:CDS | 40.0% | |
| TTACTACCTGCATCAGAACT+AGG | - | chr8.1:30535245-30535264 | None:intergenic | 40.0% | |
| TTGTGAAGATGAAGATCCCT+TGG | + | chr8.1:30535215-30535234 | MS.gene76419:CDS | 40.0% | |
| ! | AGTGGGAAACAACTTTTACC+TGG | - | chr8.1:30535425-30535444 | None:intergenic | 40.0% |
| ! | CTTCAAATCGAAGGTGTGTT+TGG | + | chr8.1:30534892-30534911 | MS.gene76419:intron | 40.0% |
| !!! | TCTCTTTCCCCTTTTTTGCA+GGG | + | chr8.1:30536535-30536554 | MS.gene76419:intron | 40.0% |
| !!! | TTCTCTTTCCCCTTTTTTGC+AGG | + | chr8.1:30536534-30536553 | MS.gene76419:intron | 40.0% |
| AGGAAACAACCAGGTATCAC+AGG | - | chr8.1:30535366-30535385 | None:intergenic | 45.0% | |
| AGGCATCAATCCAATAGCAC+GGG | - | chr8.1:30535394-30535413 | None:intergenic | 45.0% | |
| CATCAGAACTAGGACATCCA+AGG | - | chr8.1:30535235-30535254 | None:intergenic | 45.0% | |
| CCAATCTCTAAGTCATGCCA+TGG | - | chr8.1:30534169-30534188 | None:intergenic | 45.0% | |
| CCATGGCATGACTTAGAGAT+TGG | + | chr8.1:30534166-30534185 | MS.gene76419:CDS | 45.0% | |
| CCTTGATGTCCTTGTAATGG+CGG | - | chr8.1:30536152-30536171 | None:intergenic | 45.0% | |
| CTAATTTCAGCAAGCCTGTG+TGG | - | chr8.1:30536183-30536202 | None:intergenic | 45.0% | |
| GCTCCTTGATGTCCTTGTAA+TGG | - | chr8.1:30536155-30536174 | None:intergenic | 45.0% | |
| TCATTCAACGCAACAACTGG+AGG | - | chr8.1:30534100-30534119 | None:intergenic | 45.0% | |
| TCCCTGTGACAGGATTCAAA+GGG | - | chr8.1:30536082-30536101 | None:intergenic | 45.0% | |
| TCCCTTTGAATCCTGTCACA+GGG | + | chr8.1:30536078-30536097 | MS.gene76419:intron | 45.0% | |
| TTGAAAACAGATGGAGCTCC+TGG | - | chr8.1:30534296-30534315 | None:intergenic | 45.0% | |
| TTTCCCGTTGATCCCTCTAA+TGG | - | chr8.1:30535722-30535741 | None:intergenic | 45.0% | |
| AAGATGCTGCTGCTCATCCA+TGG | + | chr8.1:30534149-30534168 | MS.gene76419:CDS | 50.0% | |
| AATCCTGTCACAGGGAGAGA+AGG | + | chr8.1:30536086-30536105 | MS.gene76419:intron | 50.0% | |
| ACCAGCTGAAGCTGCTGTTA+AGG | + | chr8.1:30536412-30536431 | MS.gene76419:CDS | 50.0% | |
| ATTTCAGCAAGCCTGTGTGG+AGG | - | chr8.1:30536180-30536199 | None:intergenic | 50.0% | |
| CCGCCATTACAAGGACATCA+AGG | + | chr8.1:30536149-30536168 | MS.gene76419:CDS | 50.0% | |
| CCTTGTAATGGCGGTACTCA+GGG | - | chr8.1:30536143-30536162 | None:intergenic | 50.0% | |
| CTCCCTGTGACAGGATTCAA+AGG | - | chr8.1:30536083-30536102 | None:intergenic | 50.0% | |
| CTCCCTTTGAATCCTGTCAC+AGG | + | chr8.1:30536077-30536096 | MS.gene76419:intron | 50.0% | |
| CTGTGACAGGATTCAAAGGG+AGG | - | chr8.1:30536079-30536098 | None:intergenic | 50.0% | |
| GAATAGGAGCCTGTGATACC+TGG | + | chr8.1:30535354-30535373 | MS.gene76419:intron | 50.0% | |
| TCCTTGTAATGGCGGTACTC+AGG | - | chr8.1:30536144-30536163 | None:intergenic | 50.0% | |
| TTTCAGCAAGCCTGTGTGGA+GGG | - | chr8.1:30536179-30536198 | None:intergenic | 50.0% | |
| !! | GGATGTCCTAGTTCTGATGC+AGG | + | chr8.1:30535236-30535255 | MS.gene76419:CDS | 50.0% |
| ATCCAATAGCACGGGCACGA+AGG | - | chr8.1:30535386-30535405 | None:intergenic | 55.0% | |
| CATCCTTCTCTCCCTGTGAC+AGG | - | chr8.1:30536092-30536111 | None:intergenic | 55.0% | |
| CGTATTTGTGCACAAGCGCG+TGG | - | chr8.1:30535448-30535467 | None:intergenic | 55.0% | |
| GCCTTAACAGCAGCTTCAGC+TGG | - | chr8.1:30536416-30536435 | None:intergenic | 55.0% | |
| TTCCTTCGTGCCCGTGCTAT+TGG | + | chr8.1:30535381-30535400 | MS.gene76419:CDS | 55.0% | |
| ! | CCCTGAGTACCGCCATTACA+AGG | + | chr8.1:30536140-30536159 | MS.gene76419:CDS | 55.0% |
| CGGGCACGAAGGAAACAACC+AGG | - | chr8.1:30535375-30535394 | None:intergenic | 60.0% | |
| TCAAGGAGCTCCCTCCACAC+AGG | + | chr8.1:30536166-30536185 | MS.gene76419:CDS | 60.0% | |
| TGTGCACAAGCGCGTGGAGT+GGG | - | chr8.1:30535442-30535461 | None:intergenic | 60.0% | |
| TTGTGCACAAGCGCGTGGAG+TGG | - | chr8.1:30535443-30535462 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30534016 | 30536598 | 30534016 | ID=MS.gene76419 |
| chr8.1 | mRNA | 30534016 | 30536598 | 30534016 | ID=MS.gene76419.t1;Parent=MS.gene76419 |
| chr8.1 | exon | 30534016 | 30534187 | 30534016 | ID=MS.gene76419.t1.exon1;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30534016 | 30534187 | 30534016 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30534291 | 30534319 | 30534291 | ID=MS.gene76419.t1.exon2;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30534291 | 30534319 | 30534291 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30534482 | 30534547 | 30534482 | ID=MS.gene76419.t1.exon3;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30534482 | 30534547 | 30534482 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30535150 | 30535257 | 30535150 | ID=MS.gene76419.t1.exon4;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30535150 | 30535257 | 30535150 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30535360 | 30535425 | 30535360 | ID=MS.gene76419.t1.exon5;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30535360 | 30535425 | 30535360 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30536099 | 30536219 | 30536099 | ID=MS.gene76419.t1.exon6;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30536099 | 30536219 | 30536099 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30536369 | 30536450 | 30536369 | ID=MS.gene76419.t1.exon7;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30536369 | 30536450 | 30536369 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| chr8.1 | exon | 30536556 | 30536598 | 30536556 | ID=MS.gene76419.t1.exon8;Parent=MS.gene76419.t1 |
| chr8.1 | CDS | 30536556 | 30536598 | 30536556 | ID=cds.MS.gene76419.t1;Parent=MS.gene76419.t1 |
| Gene Sequence |
| Protein sequence |
