Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77460.t1 | XP_003601554.1 | 94.2 | 226 | 13 | 0 | 1 | 226 | 1 | 226 | 2.30E-118 | 434.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77460.t1 | Q9SFC6 | 80.2 | 177 | 35 | 0 | 49 | 225 | 61 | 237 | 1.9e-81 | 303.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77460.t1 | G7J8X4 | 94.2 | 226 | 13 | 0 | 1 | 226 | 1 | 226 | 1.7e-118 | 434.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene77460 | 0.803943 | 2.74E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene77460 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene05492 | MS.gene77460 | 0.802418 | 5.66E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene77460 | 0.836324 | 1.00E-56 | -1.69E-46 |
| MS.gene056448 | MS.gene77460 | 0.80004 | 1.74E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene77460 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene77460 | 0.8074 | 5.15E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene77460 | 0.810493 | 1.12E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene77460 | 0.819196 | 1.32E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene77460 | 0.812443 | 4.23E-51 | -1.69E-46 |
| MS.gene059933 | MS.gene77460 | 0.805504 | 1.29E-49 | -1.69E-46 |
| MS.gene060401 | MS.gene77460 | 0.825936 | 3.57E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene77460 | 0.846109 | 2.67E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77460 | MS.gene67709 | PPI |
| MS.gene67474 | MS.gene77460 | PPI |
| MS.gene77460 | MS.gene012136 | PPI |
| MS.gene77460 | MS.gene59498 | PPI |
| MS.gene77460 | MS.gene67474 | PPI |
| MS.gene77460 | MS.gene67475 | PPI |
| MS.gene77460 | MS.gene64799 | PPI |
| MS.gene77460 | MS.gene017610 | PPI |
| MS.gene77460 | MS.gene44220 | PPI |
| MS.gene77460 | MS.gene28870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77460.t1 | MTR_3g082970 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 2.96e-165 | 455 |
| MS.gene77460.t1 | MTR_2g025740 | 71.429 | 224 | 50 | 1 | 2 | 225 | 23 | 232 | 5.50e-110 | 315 |
| MS.gene77460.t1 | MTR_4g133060 | 70.335 | 209 | 62 | 0 | 17 | 225 | 13 | 221 | 2.72e-105 | 303 |
| MS.gene77460.t1 | MTR_4g133060 | 73.196 | 194 | 52 | 0 | 32 | 225 | 2 | 195 | 3.19e-102 | 294 |
| MS.gene77460.t1 | MTR_4g133060 | 65.366 | 205 | 67 | 1 | 17 | 217 | 13 | 217 | 9.57e-91 | 266 |
| MS.gene77460.t1 | MTR_8g097200 | 67.052 | 173 | 57 | 0 | 53 | 225 | 59 | 231 | 8.60e-86 | 254 |
| MS.gene77460.t1 | MTR_3g084940 | 63.636 | 176 | 63 | 1 | 52 | 226 | 52 | 227 | 2.22e-78 | 235 |
| MS.gene77460.t1 | MTR_7g097270 | 51.337 | 187 | 88 | 3 | 38 | 223 | 33 | 217 | 6.09e-63 | 196 |
| MS.gene77460.t1 | MTR_7g097270 | 49.600 | 125 | 60 | 3 | 38 | 161 | 33 | 155 | 4.77e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77460.t1 | AT3G07880 | 77.114 | 201 | 45 | 1 | 25 | 225 | 38 | 237 | 2.77e-113 | 324 |
| MS.gene77460.t1 | AT1G62450 | 65.672 | 201 | 67 | 1 | 27 | 225 | 22 | 222 | 1.52e-90 | 266 |
| MS.gene77460.t1 | AT1G12070 | 63.084 | 214 | 76 | 2 | 15 | 225 | 9 | 222 | 5.66e-89 | 262 |
Find 56 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGCAATAACATTGTTTC+TGG | 0.193009 | 3.2:-71868646 | MS.gene77460:CDS |
| CATAGGACCTAGCTGTATTT+TGG | 0.248019 | 3.2:+71869828 | None:intergenic |
| CCAGAGGGTGTGACTTCTTC+TGG | 0.286287 | 3.2:+71868414 | None:intergenic |
| AAATGGAAGGAGCAGCTTCT+TGG | 0.366946 | 3.2:-71869622 | MS.gene77460:CDS |
| TGTTTGGAAGACTGCTGTTA+AGG | 0.371169 | 3.2:-71868605 | MS.gene77460:CDS |
| GAGGAGGAAGAAGACGAATA+TGG | 0.374118 | 3.2:-71869853 | MS.gene77460:CDS |
| TAAAATTCACTTCAGGTTCA+AGG | 0.381600 | 3.2:+71868797 | None:intergenic |
| GTTTGGAAGACTGCTGTTAA+GGG | 0.387643 | 3.2:-71868604 | MS.gene77460:intron |
| AATGGAAGGAGCAGCTTCTT+GGG | 0.389589 | 3.2:-71869621 | MS.gene77460:CDS |
| TAAAATACACCAATACTGTT+TGG | 0.391465 | 3.2:-71868621 | MS.gene77460:CDS |
| GTTCTTCCTATTCCTGAAGA+TGG | 0.396229 | 3.2:-71868736 | MS.gene77460:CDS |
| TATAGGACGATGAGAGTCTA+AGG | 0.397474 | 3.2:-71869645 | MS.gene77460:intron |
| CCAGAAGAAGTCACACCCTC+TGG | 0.416770 | 3.2:-71868414 | MS.gene77460:CDS |
| AGGCTTGTAAAATTCACTTC+AGG | 0.420910 | 3.2:+71868790 | None:intergenic |
| GATAATGAAAACAAAGAAAC+AGG | 0.423638 | 3.2:-71869961 | MS.gene77460:CDS |
| TCTGGCATCTCATGTGTGTA+AGG | 0.427995 | 3.2:+71868432 | None:intergenic |
| GTGTGTAAGGCTCTGGTTGA+GGG | 0.432758 | 3.2:+71868445 | None:intergenic |
| ATCTCATGTGTGTAAGGCTC+TGG | 0.437007 | 3.2:+71868438 | None:intergenic |
| ACGATGAGAGTCTAAGGAAA+TGG | 0.439473 | 3.2:-71869639 | MS.gene77460:CDS |
| TGAGCAATAACATTGTTTCT+GGG | 0.463614 | 3.2:-71868645 | MS.gene77460:CDS |
| CAAAATACAGCTAGGTCCTA+TGG | 0.489028 | 3.2:-71869827 | MS.gene77460:CDS |
| AGAACACCTTGAGAAAGATA+AGG | 0.492651 | 3.2:-71869794 | MS.gene77460:intron |
| TGTGTGTAAGGCTCTGGTTG+AGG | 0.496739 | 3.2:+71868444 | None:intergenic |
| AGAAGATTCACTTGTATGCC+TGG | 0.500318 | 3.2:+71869888 | None:intergenic |
| TCCTGAAGATGGAAAACCAC+AGG | 0.510475 | 3.2:-71868725 | MS.gene77460:CDS |
| TCACTTGTATGCCTGGTAAG+AGG | 0.511106 | 3.2:+71869895 | None:intergenic |
| TTGTGGTTTACTCTTAAAGA+AGG | 0.514851 | 3.2:-71868700 | MS.gene77460:CDS |
| CACCCTCTGGGATATTTGCT+AGG | 0.518348 | 3.2:-71868401 | MS.gene77460:CDS |
| TGATGACAATAAATGTTACT+TGG | 0.527867 | 3.2:-71868203 | MS.gene77460:CDS |
| AGCCTTTCTATAATCTCTCC+TGG | 0.528718 | 3.2:-71868772 | MS.gene77460:CDS |
| ATGGAAAACCACAGGGATTG+TGG | 0.531586 | 3.2:-71868717 | MS.gene77460:CDS |
| ACCCTCTGGGATATTTGCTA+GGG | 0.538296 | 3.2:-71868400 | MS.gene77460:CDS |
| ACAAAACCTTATCTTTCTCA+AGG | 0.549448 | 3.2:+71869788 | None:intergenic |
| AACATCATGAGCCTCTTACC+AGG | 0.549984 | 3.2:-71869906 | MS.gene77460:CDS |
| ACAGGACAAACTAGTGAGGC+TGG | 0.550189 | 3.2:-71869943 | MS.gene77460:CDS |
| AAGCTGAATTTCAGACGGTA+AGG | 0.552089 | 3.2:+71868673 | None:intergenic |
| ACAATATTCTGCAAGATCAA+AGG | 0.554037 | 3.2:-71868376 | MS.gene77460:intron |
| GATAGCTCAAAAGAGATGCT+TGG | 0.554702 | 3.2:-71868477 | MS.gene77460:CDS |
| GTCGATGTCAACAACATTGG+AGG | 0.554851 | 3.2:-71869595 | MS.gene77460:intron |
| AGCAGTCTTCCAAACAGTAT+TGG | 0.558230 | 3.2:+71868612 | None:intergenic |
| CAGAAGAAGTCACACCCTCT+GGG | 0.582116 | 3.2:-71868413 | MS.gene77460:CDS |
| TACCAGGAGAGATTATAGAA+AGG | 0.583890 | 3.2:+71868770 | None:intergenic |
| TGTTCTTTAATAGTGACCAT+AGG | 0.603238 | 3.2:+71869811 | None:intergenic |
| AGTGTCGATGTCAACAACAT+TGG | 0.603658 | 3.2:-71869598 | MS.gene77460:CDS |
| CCTGAAGATGGAAAACCACA+GGG | 0.604006 | 3.2:-71868724 | MS.gene77460:CDS |
| AGAACAATGTCATCTCTACC+AGG | 0.617705 | 3.2:+71868754 | None:intergenic |
| CCCCTAGCAAATATCCCAGA+GGG | 0.617735 | 3.2:+71868399 | None:intergenic |
| TGAGAGTCTAAGGAAATGGA+AGG | 0.619544 | 3.2:-71869635 | MS.gene77460:CDS |
| TATGGAGCCAAAATACAGCT+AGG | 0.624057 | 3.2:-71869835 | MS.gene77460:CDS |
| TTCTGTCTATGCAACTGAGG+AGG | 0.624555 | 3.2:-71869869 | MS.gene77460:CDS |
| CAACAAAGCTGAATTTCAGA+CGG | 0.649490 | 3.2:+71868668 | None:intergenic |
| CCCTCTGGGATATTTGCTAG+GGG | 0.670702 | 3.2:-71868399 | MS.gene77460:CDS |
| AGAGTAAACCACAATCCCTG+TGG | 0.676637 | 3.2:+71868709 | None:intergenic |
| ATCTTCTGTCTATGCAACTG+AGG | 0.702591 | 3.2:-71869872 | MS.gene77460:CDS |
| AGAAACAGGACAAACTAGTG+AGG | 0.703043 | 3.2:-71869947 | MS.gene77460:CDS |
| TCCCCTAGCAAATATCCCAG+AGG | 0.719574 | 3.2:+71868398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATCAATAATTGATA+AGG | - | chr3.2:71868744-71868763 | MS.gene77460:CDS | 10.0% |
| !! | AATATAATTCTTTCATTTAC+AGG | - | chr3.2:71868783-71868802 | MS.gene77460:CDS | 15.0% |
| !! | GTAATTTAAGTAATTTACTT+AGG | + | chr3.2:71868415-71868434 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTCATTGTTTTT+GGG | - | chr3.2:71868451-71868470 | MS.gene77460:CDS | 15.0% |
| !!! | TTTTTTTTGTTCATTGTTTT+TGG | - | chr3.2:71868450-71868469 | MS.gene77460:CDS | 15.0% |
| !! | AACTAACCAAACATAAATTT+GGG | + | chr3.2:71868967-71868986 | None:intergenic | 20.0% |
| !! | TAACTAACCAAACATAAATT+TGG | + | chr3.2:71868968-71868987 | None:intergenic | 20.0% |
| !!! | GAAAACGTAAATAATCATTT+TGG | + | chr3.2:71869205-71869224 | None:intergenic | 20.0% |
| !!! | TAAAACAAATGTTATTTCAG+TGG | - | chr3.2:71869633-71869652 | MS.gene77460:CDS | 20.0% |
| !!! | TCAACTATACTTTTGATATT+AGG | - | chr3.2:71869955-71869974 | MS.gene77460:CDS | 20.0% |
| !!! | TTAGTTACCAATTTTTTTTG+TGG | - | chr3.2:71869012-71869031 | MS.gene77460:intron | 20.0% |
| !!! | TTATGTTTGGTTAGTTATTT+TGG | - | chr3.2:71868971-71868990 | MS.gene77460:intron | 20.0% |
| !!! | TTTTTGATTACATAGATCAA+AGG | - | chr3.2:71869794-71869813 | MS.gene77460:intron | 20.0% |
| ! | AACTTGACCACAAAAAAAAT+TGG | + | chr3.2:71869022-71869041 | None:intergenic | 25.0% |
| ! | AATTTGTCTTCATAGATCAT+AGG | - | chr3.2:71868896-71868915 | MS.gene77460:intron | 25.0% |
| ! | ACGAAGAAAATATTTATACG+TGG | - | chr3.2:71869254-71869273 | MS.gene77460:intron | 25.0% |
| ! | ACTAATATGAAACACATTTG+TGG | + | chr3.2:71869062-71869081 | None:intergenic | 25.0% |
| ! | AGTATACCCAAATTTATGTT+TGG | - | chr3.2:71868958-71868977 | MS.gene77460:intron | 25.0% |
| ! | GATAATGAAAACAAAGAAAC+AGG | - | chr3.2:71868171-71868190 | MS.gene77460:CDS | 25.0% |
| ! | GTGTTACAAAATTGGAAATT+TGG | + | chr3.2:71869588-71869607 | None:intergenic | 25.0% |
| ! | GTGTTTCATATTAGTCAATT+TGG | - | chr3.2:71869067-71869086 | MS.gene77460:intron | 25.0% |
| ! | TAAAATACACCAATACTGTT+TGG | - | chr3.2:71869511-71869530 | MS.gene77460:intron | 25.0% |
| ! | TGATGACAATAAATGTTACT+TGG | - | chr3.2:71869929-71869948 | MS.gene77460:CDS | 25.0% |
| ! | TGTATGAAATAAACAAGTGT+GGG | - | chr3.2:71869231-71869250 | MS.gene77460:intron | 25.0% |
| ! | TTGTATGAAATAAACAAGTG+TGG | - | chr3.2:71869230-71869249 | MS.gene77460:intron | 25.0% |
| !! | CTATACTTTTGATATTAGGA+AGG | - | chr3.2:71869959-71869978 | MS.gene77460:CDS | 25.0% |
| !! | CTTTAGTCTTTAATTATGTG+AGG | - | chr3.2:71868834-71868853 | MS.gene77460:intron | 25.0% |
| !! | TGGACAATTTTCTTTTACAA+AGG | + | chr3.2:71868600-71868619 | None:intergenic | 25.0% |
| !! | TTTTGATATTAGGAAGGATT+GGG | - | chr3.2:71869965-71869984 | MS.gene77460:CDS | 25.0% |
| !!! | AGATAAGGTTTTGTTTCTTT+TGG | - | chr3.2:71868353-71868372 | MS.gene77460:intron | 25.0% |
| ACAAAACCTTATCTTTCTCA+AGG | + | chr3.2:71868347-71868366 | None:intergenic | 30.0% | |
| ACAATATTCTGCAAGATCAA+AGG | - | chr3.2:71869756-71869775 | MS.gene77460:intron | 30.0% | |
| AGGGATAAGTGTTACAAAAT+TGG | + | chr3.2:71869596-71869615 | None:intergenic | 30.0% | |
| TGTTCTTTAATAGTGACCAT+AGG | + | chr3.2:71868324-71868343 | None:intergenic | 30.0% | |
| TTGTGGTTTACTCTTAAAGA+AGG | - | chr3.2:71869432-71869451 | MS.gene77460:intron | 30.0% | |
| ! | AAACACATTTGTGGACTAAT+TGG | + | chr3.2:71869053-71869072 | None:intergenic | 30.0% |
| ! | CATTGGAGGTATATAAATCA+TGG | - | chr3.2:71868551-71868570 | MS.gene77460:intron | 30.0% |
| ! | CTTTTGATATTAGGAAGGAT+TGG | - | chr3.2:71869964-71869983 | MS.gene77460:CDS | 30.0% |
| ! | TAAAATTCACTTCAGGTTCA+AGG | + | chr3.2:71869338-71869357 | None:intergenic | 30.0% |
| ! | TGAGCAATAACATTGTTTCT+GGG | - | chr3.2:71869487-71869506 | MS.gene77460:intron | 30.0% |
| !!! | ATTGAAAGTGACGTTGATTT+TGG | + | chr3.2:71868620-71868639 | None:intergenic | 30.0% |
| AGAACACCTTGAGAAAGATA+AGG | - | chr3.2:71868338-71868357 | MS.gene77460:intron | 35.0% | |
| AGGCTTGTAAAATTCACTTC+AGG | + | chr3.2:71869345-71869364 | None:intergenic | 35.0% | |
| CAACAAAGCTGAATTTCAGA+CGG | + | chr3.2:71869467-71869486 | None:intergenic | 35.0% | |
| GTGAGCAATAACATTGTTTC+TGG | - | chr3.2:71869486-71869505 | MS.gene77460:intron | 35.0% | |
| TAAAACTTTCCTCATCTCCA+TGG | + | chr3.2:71868935-71868954 | None:intergenic | 35.0% | |
| TACCAGGAGAGATTATAGAA+AGG | + | chr3.2:71869365-71869384 | None:intergenic | 35.0% | |
| TATCTTTCTTGTGCAGTTTC+TGG | - | chr3.2:71869905-71869924 | MS.gene77460:CDS | 35.0% | |
| TGGGTTGTACGATTGAATAT+AGG | - | chr3.2:71868470-71868489 | MS.gene77460:CDS | 35.0% | |
| AAGCTGAATTTCAGACGGTA+AGG | + | chr3.2:71869462-71869481 | None:intergenic | 40.0% | |
| ACGATGAGAGTCTAAGGAAA+TGG | - | chr3.2:71868493-71868512 | MS.gene77460:intron | 40.0% | |
| AGAAACAGGACAAACTAGTG+AGG | - | chr3.2:71868185-71868204 | MS.gene77460:CDS | 40.0% | |
| AGAACAATGTCATCTCTACC+AGG | + | chr3.2:71869381-71869400 | None:intergenic | 40.0% | |
| AGAAGATTCACTTGTATGCC+TGG | + | chr3.2:71868247-71868266 | None:intergenic | 40.0% | |
| AGACAGTTACCATAGTGACA+TGG | - | chr3.2:71869155-71869174 | MS.gene77460:intron | 40.0% | |
| AGCAGTCTTCCAAACAGTAT+TGG | + | chr3.2:71869523-71869542 | None:intergenic | 40.0% | |
| AGCCTTTCTATAATCTCTCC+TGG | - | chr3.2:71869360-71869379 | MS.gene77460:intron | 40.0% | |
| ATCTTCTGTCTATGCAACTG+AGG | - | chr3.2:71868260-71868279 | MS.gene77460:intron | 40.0% | |
| CAAAATACAGCTAGGTCCTA+TGG | - | chr3.2:71868305-71868324 | MS.gene77460:intron | 40.0% | |
| CATAGATCATAGGTGACTCT+TGG | - | chr3.2:71868906-71868925 | MS.gene77460:intron | 40.0% | |
| GATAGCTCAAAAGAGATGCT+TGG | - | chr3.2:71869655-71869674 | MS.gene77460:intron | 40.0% | |
| GTTCTTCCTATTCCTGAAGA+TGG | - | chr3.2:71869396-71869415 | MS.gene77460:intron | 40.0% | |
| GTTTGGAAGACTGCTGTTAA+GGG | - | chr3.2:71869528-71869547 | MS.gene77460:intron | 40.0% | |
| TATAGGACGATGAGAGTCTA+AGG | - | chr3.2:71868487-71868506 | MS.gene77460:intron | 40.0% | |
| TATGGAGCCAAAATACAGCT+AGG | - | chr3.2:71868297-71868316 | MS.gene77460:intron | 40.0% | |
| TGAGAGTCTAAGGAAATGGA+AGG | - | chr3.2:71868497-71868516 | MS.gene77460:intron | 40.0% | |
| TGTTTGGAAGACTGCTGTTA+AGG | - | chr3.2:71869527-71869546 | MS.gene77460:intron | 40.0% | |
| TTTGTGAGACCATGTCACTA+TGG | + | chr3.2:71869167-71869186 | None:intergenic | 40.0% | |
| ! | CATAGGACCTAGCTGTATTT+TGG | + | chr3.2:71868307-71868326 | None:intergenic | 40.0% |
| ! | GGTTTTCCATCTTCAGGAAT+AGG | + | chr3.2:71869405-71869424 | None:intergenic | 40.0% |
| !! | AGTGTCGATGTCAACAACAT+TGG | - | chr3.2:71868534-71868553 | MS.gene77460:intron | 40.0% |
| AAATGGAAGGAGCAGCTTCT+TGG | - | chr3.2:71868510-71868529 | MS.gene77460:intron | 45.0% | |
| AACATCATGAGCCTCTTACC+AGG | - | chr3.2:71868226-71868245 | MS.gene77460:intron | 45.0% | |
| AATGGAAGGAGCAGCTTCTT+GGG | - | chr3.2:71868511-71868530 | MS.gene77460:intron | 45.0% | |
| AGAGTAAACCACAATCCCTG+TGG | + | chr3.2:71869426-71869445 | None:intergenic | 45.0% | |
| ATCTCATGTGTGTAAGGCTC+TGG | + | chr3.2:71869697-71869716 | None:intergenic | 45.0% | |
| ATGGAAAACCACAGGGATTG+TGG | - | chr3.2:71869415-71869434 | MS.gene77460:intron | 45.0% | |
| CCTGAAGATGGAAAACCACA+GGG | - | chr3.2:71869408-71869427 | MS.gene77460:intron | 45.0% | |
| GAGGAGGAAGAAGACGAATA+TGG | - | chr3.2:71868279-71868298 | MS.gene77460:intron | 45.0% | |
| GTCGATGTCAACAACATTGG+AGG | - | chr3.2:71868537-71868556 | MS.gene77460:intron | 45.0% | |
| TCACTTGTATGCCTGGTAAG+AGG | + | chr3.2:71868240-71868259 | None:intergenic | 45.0% | |
| TCCTGAAGATGGAAAACCAC+AGG | - | chr3.2:71869407-71869426 | MS.gene77460:intron | 45.0% | |
| TCTGGCATCTCATGTGTGTA+AGG | + | chr3.2:71869703-71869722 | None:intergenic | 45.0% | |
| TTCTGTCTATGCAACTGAGG+AGG | - | chr3.2:71868263-71868282 | MS.gene77460:intron | 45.0% | |
| !! | ACCCTCTGGGATATTTGCTA+GGG | - | chr3.2:71869732-71869751 | MS.gene77460:intron | 45.0% |
| !! | TAAAAATAATAATCAATATT+AGG | + | chr3.2:71868649-71868668 | None:intergenic | 5.0% |
| !! | TAATACAATTAAAATTAAAA+GGG | + | chr3.2:71869615-71869634 | None:intergenic | 5.0% |
| !! | TTAATACAATTAAAATTAAA+AGG | + | chr3.2:71869616-71869635 | None:intergenic | 5.0% |
| !!! | TTTTTTAGAAATTTTATTTA+TGG | + | chr3.2:71869094-71869113 | None:intergenic | 5.0% |
| ACAGGACAAACTAGTGAGGC+TGG | - | chr3.2:71868189-71868208 | MS.gene77460:CDS | 50.0% | |
| CAGAAGAAGTCACACCCTCT+GGG | - | chr3.2:71869719-71869738 | MS.gene77460:intron | 50.0% | |
| CCCCTAGCAAATATCCCAGA+GGG | + | chr3.2:71869736-71869755 | None:intergenic | 50.0% | |
| TCCCCTAGCAAATATCCCAG+AGG | + | chr3.2:71869737-71869756 | None:intergenic | 50.0% | |
| ! | CCCTGTGGTTTTCCATCTTC+AGG | + | chr3.2:71869411-71869430 | None:intergenic | 50.0% |
| ! | GTGTGTAAGGCTCTGGTTGA+GGG | + | chr3.2:71869690-71869709 | None:intergenic | 50.0% |
| ! | TGTGTGTAAGGCTCTGGTTG+AGG | + | chr3.2:71869691-71869710 | None:intergenic | 50.0% |
| !! | CACCCTCTGGGATATTTGCT+AGG | - | chr3.2:71869731-71869750 | MS.gene77460:intron | 50.0% |
| !! | CCCTCTGGGATATTTGCTAG+GGG | - | chr3.2:71869733-71869752 | MS.gene77460:intron | 50.0% |
| CCAGAAGAAGTCACACCCTC+TGG | - | chr3.2:71869718-71869737 | MS.gene77460:intron | 55.0% | |
| TAGGTGACTCTTGGTCGCCA+TGG | - | chr3.2:71868915-71868934 | MS.gene77460:intron | 55.0% | |
| TCTTGGTCGCCATGGAGATG+AGG | - | chr3.2:71868923-71868942 | MS.gene77460:intron | 55.0% | |
| ! | CCAGAGGGTGTGACTTCTTC+TGG | + | chr3.2:71869721-71869740 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71868162 | 71869992 | 71868162 | ID=MS.gene77460 |
| chr3.2 | mRNA | 71868162 | 71869992 | 71868162 | ID=MS.gene77460.t1;Parent=MS.gene77460 |
| chr3.2 | exon | 71869795 | 71869992 | 71869795 | ID=MS.gene77460.t1.exon1;Parent=MS.gene77460.t1 |
| chr3.2 | CDS | 71869795 | 71869992 | 71869795 | ID=cds.MS.gene77460.t1;Parent=MS.gene77460.t1 |
| chr3.2 | exon | 71869596 | 71869662 | 71869596 | ID=MS.gene77460.t1.exon2;Parent=MS.gene77460.t1 |
| chr3.2 | CDS | 71869596 | 71869662 | 71869596 | ID=cds.MS.gene77460.t1;Parent=MS.gene77460.t1 |
| chr3.2 | exon | 71868605 | 71868823 | 71868605 | ID=MS.gene77460.t1.exon3;Parent=MS.gene77460.t1 |
| chr3.2 | CDS | 71868605 | 71868823 | 71868605 | ID=cds.MS.gene77460.t1;Parent=MS.gene77460.t1 |
| chr3.2 | exon | 71868377 | 71868501 | 71868377 | ID=MS.gene77460.t1.exon4;Parent=MS.gene77460.t1 |
| chr3.2 | CDS | 71868377 | 71868501 | 71868377 | ID=cds.MS.gene77460.t1;Parent=MS.gene77460.t1 |
| chr3.2 | exon | 71868162 | 71868233 | 71868162 | ID=MS.gene77460.t1.exon5;Parent=MS.gene77460.t1 |
| chr3.2 | CDS | 71868162 | 71868233 | 71868162 | ID=cds.MS.gene77460.t1;Parent=MS.gene77460.t1 |
| Gene Sequence |
| Protein sequence |
