Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78956.t1 | KEH19097.1 | 99.4 | 341 | 2 | 0 | 1 | 341 | 1 | 341 | 1.50E-193 | 685.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78956.t1 | Q7ZVZ7 | 43.7 | 263 | 141 | 5 | 6 | 263 | 27 | 287 | 2.0e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78956.t1 | A0A072TNV6 | 99.4 | 341 | 2 | 0 | 1 | 341 | 1 | 341 | 1.1e-193 | 685.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049633 | MS.gene78956 | -0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene78956 | -0.803307 | 3.71E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene78956 | 0.818746 | 1.67E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene78956 | -0.801854 | 7.40E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene78956 | -0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene78956 | -0.821372 | 4.18E-53 | -1.69E-46 |
| MS.gene055251 | MS.gene78956 | 0.843056 | 1.77E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene78956 | -0.824692 | 7.03E-54 | -1.69E-46 |
| MS.gene055750 | MS.gene78956 | -0.814951 | 1.19E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene78956 | -0.835664 | 1.47E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene78956 | -0.808388 | 3.17E-50 | -1.69E-46 |
| MS.gene056283 | MS.gene78956 | -0.814374 | 1.59E-51 | -1.69E-46 |
| MS.gene056510 | MS.gene78956 | -0.800277 | 1.55E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene78956 | 0.827879 | 1.23E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene78956 | -0.812193 | 4.79E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene78956 | -0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene78956 | -0.839257 | 1.77E-57 | -1.69E-46 |
| MS.gene061044 | MS.gene78956 | 0.803047 | 4.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78956.t1 | MTR_8g037335 | 99.413 | 341 | 2 | 0 | 1 | 341 | 1 | 341 | 0.0 | 703 |
| MS.gene78956.t1 | MTR_5g029210 | 99.322 | 295 | 2 | 0 | 1 | 295 | 1 | 295 | 0.0 | 613 |
| MS.gene78956.t1 | MTR_7g032640 | 60.073 | 273 | 104 | 1 | 1 | 273 | 1 | 268 | 1.61e-123 | 360 |
| MS.gene78956.t1 | MTR_3g075410 | 56.766 | 303 | 125 | 3 | 1 | 302 | 1 | 298 | 7.19e-123 | 358 |
| MS.gene78956.t1 | MTR_7g017430 | 61.232 | 276 | 96 | 2 | 1 | 273 | 1 | 268 | 3.12e-118 | 347 |
| MS.gene78956.t1 | MTR_6g018930 | 55.305 | 311 | 127 | 4 | 1 | 299 | 1 | 311 | 5.23e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78956.t1 | AT1G32190 | 78.523 | 298 | 60 | 1 | 1 | 294 | 1 | 298 | 8.60e-170 | 479 |
| MS.gene78956.t1 | AT2G24320 | 57.239 | 297 | 118 | 3 | 1 | 294 | 1 | 291 | 4.22e-128 | 368 |
| MS.gene78956.t1 | AT2G24320 | 57.586 | 290 | 114 | 3 | 8 | 294 | 1 | 284 | 1.33e-125 | 362 |
| MS.gene78956.t1 | AT4G24760 | 56.393 | 305 | 123 | 3 | 1 | 305 | 1 | 295 | 4.02e-125 | 363 |
| MS.gene78956.t1 | AT3G30380 | 63.060 | 268 | 93 | 2 | 1 | 268 | 1 | 262 | 8.24e-125 | 363 |
| MS.gene78956.t1 | AT4G31020 | 60.517 | 271 | 100 | 2 | 1 | 270 | 1 | 265 | 1.28e-124 | 360 |
| MS.gene78956.t1 | AT4G31020 | 60.517 | 271 | 100 | 2 | 1 | 270 | 1 | 265 | 1.28e-124 | 360 |
| MS.gene78956.t1 | AT3G30380 | 63.060 | 268 | 93 | 2 | 1 | 268 | 1 | 262 | 1.62e-124 | 363 |
| MS.gene78956.t1 | AT3G01690 | 55.519 | 308 | 113 | 3 | 1 | 289 | 1 | 303 | 2.38e-120 | 351 |
| MS.gene78956.t1 | AT5G14390 | 55.484 | 310 | 112 | 4 | 1 | 289 | 1 | 305 | 1.87e-119 | 349 |
| MS.gene78956.t1 | AT1G66900 | 60.364 | 275 | 101 | 3 | 1 | 273 | 1 | 269 | 1.18e-117 | 341 |
| MS.gene78956.t1 | AT5G38220 | 60.448 | 268 | 99 | 3 | 1 | 268 | 1 | 261 | 9.99e-116 | 338 |
| MS.gene78956.t1 | AT5G38220 | 60.448 | 268 | 99 | 3 | 1 | 268 | 1 | 261 | 9.99e-116 | 338 |
| MS.gene78956.t1 | AT1G13610 | 54.915 | 295 | 126 | 4 | 1 | 294 | 1 | 289 | 1.40e-110 | 326 |
| MS.gene78956.t1 | AT1G32190 | 80.682 | 176 | 34 | 0 | 119 | 294 | 38 | 213 | 2.48e-102 | 305 |
| MS.gene78956.t1 | AT5G38220 | 61.502 | 213 | 75 | 3 | 1 | 213 | 1 | 206 | 3.94e-86 | 259 |
| MS.gene78956.t1 | AT1G13610 | 58.286 | 175 | 70 | 1 | 120 | 294 | 18 | 189 | 5.54e-64 | 204 |
Find 79 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACAGCGGAATTCTTTC+TGG | 0.105487 | 5.3:-18178656 | MS.gene78956:CDS |
| CAACTTGGTCTTGAACATTT+AGG | 0.151307 | 5.3:+18176604 | None:intergenic |
| TTGTCATCTTCTCCATTTCT+TGG | 0.196441 | 5.3:+18176992 | None:intergenic |
| CATGGCAATGCTGCTGATTT+AGG | 0.205462 | 5.3:-18180963 | MS.gene78956:CDS |
| TTCCTGGCCAACTCCATATT+TGG | 0.237019 | 5.3:+18178763 | None:intergenic |
| CAACAAGGCAATGAACATTT+TGG | 0.250347 | 5.3:+18176631 | None:intergenic |
| CCGAAGTTCACAGATTGTTT+TGG | 0.276283 | 5.3:-18176697 | MS.gene78956:CDS |
| TCCCGCAGGTATGACTATTC+TGG | 0.284559 | 5.3:-18179046 | MS.gene78956:intron |
| AACTTGGTCTTGAACATTTA+GGG | 0.297120 | 5.3:+18176605 | None:intergenic |
| CTTGGATGAATTTGCATAGA+TGG | 0.300293 | 5.3:+18177010 | None:intergenic |
| GAATGCCTTGAAACCAAATA+TGG | 0.310658 | 5.3:-18178776 | MS.gene78956:CDS |
| TGATCTCTTTGTTCAACTTA+AGG | 0.314107 | 5.3:-18180931 | MS.gene78956:CDS |
| CATAGATGGCGTATGTAATC+AGG | 0.321303 | 5.3:+18177024 | None:intergenic |
| TGGCAACCGACTATGGAAAA+TGG | 0.324511 | 5.3:-18177109 | MS.gene78956:CDS |
| GGTTACATGGCAACCGACTA+TGG | 0.328727 | 5.3:-18177116 | MS.gene78956:CDS |
| CAGGAAGACGTAATCTTATA+CGG | 0.331817 | 5.3:-18178746 | MS.gene78956:CDS |
| AGCAAAGTTAATCTTGCATA+AGG | 0.341545 | 5.3:+18180993 | None:intergenic |
| AGGTATGACTATTCTGGATA+TGG | 0.361762 | 5.3:-18179040 | MS.gene78956:CDS |
| CAACTCCATATTTGGTTTCA+AGG | 0.370723 | 5.3:+18178771 | None:intergenic |
| GGGAGTCATATGAACCCTTA+TGG | 0.381353 | 5.3:-18177083 | MS.gene78956:CDS |
| ATGCAAATTCATCCAAGAAA+TGG | 0.386608 | 5.3:-18177004 | MS.gene78956:CDS |
| CGTATAAGATTACGTCTTCC+TGG | 0.406105 | 5.3:+18178747 | None:intergenic |
| CAAAGAATAGCCTACCTTGC+CGG | 0.418742 | 5.3:+18179009 | None:intergenic |
| GCCTCTCAGCCTCGGCAACT+TGG | 0.418920 | 5.3:+18178685 | None:intergenic |
| ACCGCCTCCTTTGATCCATA+AGG | 0.421520 | 5.3:+18177068 | None:intergenic |
| CCGCCTCCTTTGATCCATAA+GGG | 0.422572 | 5.3:+18177069 | None:intergenic |
| GCAAAGTTAATCTTGCATAA+GGG | 0.428314 | 5.3:+18180994 | None:intergenic |
| ATCTTATACGGGCAATCAGT+TGG | 0.448134 | 5.3:-18178734 | MS.gene78956:CDS |
| TTAACTTTGCTTTATTCTCA+TGG | 0.455196 | 5.3:-18180981 | MS.gene78956:CDS |
| AAGTGGACCAACATTGCATT+TGG | 0.456630 | 5.3:-18178711 | MS.gene78956:CDS |
| TCTGGATATGGTGCCTCTAC+CGG | 0.462209 | 5.3:-18179028 | MS.gene78956:CDS |
| TTCTTCAGCTGATACGTTGG+TGG | 0.465989 | 5.3:+18181146 | None:intergenic |
| TTATCATCAGGATGAGGAAT+CGG | 0.478365 | 5.3:+18181083 | None:intergenic |
| CAGAAGATGACGTAGTCAAT+TGG | 0.479966 | 5.3:-18177137 | MS.gene78956:CDS |
| TCATCCTGATGATAACTCAT+TGG | 0.484592 | 5.3:-18181075 | MS.gene78956:CDS |
| CTTCTTGTTGACACAAAACA+TGG | 0.495893 | 5.3:-18181047 | MS.gene78956:CDS |
| AGCTGATACGTTGGTGGTGA+AGG | 0.499741 | 5.3:+18181152 | None:intergenic |
| CTTACATGTATTACAAGGAC+AGG | 0.499842 | 5.3:+18178170 | None:intergenic |
| ACATCCAATGAGTTATCATC+AGG | 0.502138 | 5.3:+18181071 | None:intergenic |
| ATTTACTTACATGTATTACA+AGG | 0.507529 | 5.3:+18178165 | None:intergenic |
| TTCTTCTTCAGCTGATACGT+TGG | 0.513005 | 5.3:+18181143 | None:intergenic |
| ATAGCCTACCTTGCCGGTAG+AGG | 0.517191 | 5.3:+18179015 | None:intergenic |
| CTCTATGTCAGCATATGTGC+TGG | 0.520235 | 5.3:+18178808 | None:intergenic |
| AACCAAATATGGAGTTGGCC+AGG | 0.523037 | 5.3:-18178765 | MS.gene78956:CDS |
| AATCTCAGAGTTAATCTCAT+GGG | 0.526908 | 5.3:-18180906 | MS.gene78956:CDS |
| AAACAACTCATGCAACAACT+TGG | 0.530466 | 5.3:+18176589 | None:intergenic |
| GAACATCAACAAAATAAAGA+AGG | 0.540351 | 5.3:-18178201 | MS.gene78956:CDS |
| TACGGGCAATCAGTTGGAAG+TGG | 0.541674 | 5.3:-18178728 | MS.gene78956:CDS |
| CTTGAAACCAAATATGGAGT+TGG | 0.559208 | 5.3:-18178770 | MS.gene78956:CDS |
| GCATATGTGCTGGATTCACT+AGG | 0.560112 | 5.3:+18178818 | None:intergenic |
| CAGCTGAAGAAGAATGATGA+TGG | 0.561573 | 5.3:-18181134 | MS.gene78956:CDS |
| GACGTAGTCAATTGGTTACA+TGG | 0.564056 | 5.3:-18177129 | MS.gene78956:CDS |
| TATGAACCCTTATGGATCAA+AGG | 0.569011 | 5.3:-18177075 | MS.gene78956:CDS |
| TGTGTGATGAATGGGTTGCA+TGG | 0.573626 | 5.3:-18181210 | None:intergenic |
| ATTTGGCAGCCAAGTTGCCG+AGG | 0.573657 | 5.3:-18178694 | MS.gene78956:CDS |
| CCAAAACAATCTGTGAACTT+CGG | 0.579808 | 5.3:+18176697 | None:intergenic |
| ATGAGGAATCGGAGAAGCGG+TGG | 0.579853 | 5.3:+18181094 | None:intergenic |
| AGGAAGACGTAATCTTATAC+GGG | 0.584093 | 5.3:-18178745 | MS.gene78956:CDS |
| CAGCACATATGCTGACATAG+AGG | 0.584108 | 5.3:-18178807 | MS.gene78956:CDS |
| TTGGCTGCCAAATGCAATGT+TGG | 0.588250 | 5.3:+18178704 | None:intergenic |
| ACCGACTATGGAAAATGGCA+AGG | 0.593180 | 5.3:-18177104 | MS.gene78956:CDS |
| GCCAAGTTGCCGAGGCTGAG+AGG | 0.600499 | 5.3:-18178686 | MS.gene78956:CDS |
| GTTGCCGAGGCTGAGAGGCG+TGG | 0.600591 | 5.3:-18178681 | MS.gene78956:CDS |
| CCCTTATGGATCAAAGGAGG+CGG | 0.604217 | 5.3:-18177069 | MS.gene78956:CDS |
| AATGAGTTATCATCAGGATG+AGG | 0.605904 | 5.3:+18181077 | None:intergenic |
| TAATCTCAGAGTTAATCTCA+TGG | 0.609130 | 5.3:-18180907 | MS.gene78956:CDS |
| ATCTCAGAGTTAATCTCATG+GGG | 0.613897 | 5.3:-18180905 | MS.gene78956:intron |
| ATAGATGGCGTATGTAATCA+GGG | 0.614420 | 5.3:+18177025 | None:intergenic |
| AGAACCACGCCTCTCAGCCT+CGG | 0.615868 | 5.3:+18178677 | None:intergenic |
| AATCTGTGAACTTCGGTAAG+CGG | 0.623999 | 5.3:+18176704 | None:intergenic |
| AGGATGAGGAATCGGAGAAG+CGG | 0.631727 | 5.3:+18181091 | None:intergenic |
| GAATGATGATGGCAAACTCA+CGG | 0.632646 | 5.3:-18181123 | MS.gene78956:CDS |
| ATATGGTGCCTCTACCGGCA+AGG | 0.642432 | 5.3:-18179023 | MS.gene78956:intron |
| GAACATTTAGGGTAGCAACA+AGG | 0.657420 | 5.3:+18176616 | None:intergenic |
| TGATACGTTGGTGGTGAAGG+TGG | 0.669917 | 5.3:+18181155 | None:intergenic |
| CCGACTATGGAAAATGGCAA+GGG | 0.671837 | 5.3:-18177103 | MS.gene78956:CDS |
| GAACCCTTATGGATCAAAGG+AGG | 0.684609 | 5.3:-18177072 | MS.gene78956:CDS |
| AGAGGCGTGGTTCTTCACAG+CGG | 0.773437 | 5.3:-18178668 | MS.gene78956:CDS |
| TGATGATGGCAAACTCACGG+TGG | 0.774722 | 5.3:-18181120 | MS.gene78956:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATAGAAAAACTAAAT+AGG | + | chr5.3:18178392-18178411 | None:intergenic | 10.0% |
| !! | ATTTATAGAAAAACTAAATA+GGG | + | chr5.3:18178391-18178410 | None:intergenic | 10.0% |
| !! | TTTAATTCTAATTCTTTAAA+AGG | + | chr5.3:18177950-18177969 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATGTCAACTAT+AGG | + | chr5.3:18180434-18180453 | None:intergenic | 15.0% |
| !! | AAATTAAGAAAGTAAAACAA+AGG | + | chr5.3:18177780-18177799 | None:intergenic | 15.0% |
| !! | CAACAAAAATATAGTTTATT+TGG | - | chr5.3:18177164-18177183 | MS.gene78956:intron | 15.0% |
| !! | TAAAAAATGAATATGTACAT+TGG | - | chr5.3:18178492-18178511 | MS.gene78956:intron | 15.0% |
| !! | TAAATAATAAAAGTGAGTTT+CGG | - | chr5.3:18179467-18179486 | MS.gene78956:intron | 15.0% |
| !! | TTTATATGATAAATACATTG+AGG | - | chr5.3:18180469-18180488 | MS.gene78956:intron | 15.0% |
| !!! | ACTTTTATTATTTAAGTTGT+TGG | + | chr5.3:18179461-18179480 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTGTTTGTTTA+GGG | + | chr5.3:18177597-18177616 | None:intergenic | 15.0% |
| !!! | TGATTAATTTGAAAAACATA+AGG | + | chr5.3:18176932-18176951 | None:intergenic | 15.0% |
| !! | ATCAAGATAATACAAAACAA+GGG | + | chr5.3:18177115-18177134 | None:intergenic | 20.0% |
| !! | ATGAAAAAGTTAAAGTGAAA+AGG | - | chr5.3:18177615-18177634 | MS.gene78956:intron | 20.0% |
| !! | ATGTCTAATAGTAAATTGAA+TGG | + | chr5.3:18178209-18178228 | None:intergenic | 20.0% |
| !! | ATGTGTCTTTCATTTATTAA+CGG | - | chr5.3:18179435-18179454 | MS.gene78956:intron | 20.0% |
| !! | ATTCAATTAAACACATAACA+AGG | - | chr5.3:18178580-18178599 | MS.gene78956:intron | 20.0% |
| !! | ATTTACTTACATGTATTACA+AGG | + | chr5.3:18179634-18179653 | None:intergenic | 20.0% |
| !! | ATTTATCATATAAACTAGTG+AGG | + | chr5.3:18180463-18180482 | None:intergenic | 20.0% |
| !! | GAAAATGATAAATGTATGTT+TGG | - | chr5.3:18177970-18177989 | MS.gene78956:intron | 20.0% |
| !! | GAACTTCAAATCAATAATAA+TGG | + | chr5.3:18178369-18178388 | None:intergenic | 20.0% |
| !! | TATTATGTTAATCTATGCAT+TGG | - | chr5.3:18177224-18177243 | MS.gene78956:intron | 20.0% |
| !!! | ATAGTTTATTTGGTTTTAGT+GGG | - | chr5.3:18177174-18177193 | MS.gene78956:intron | 20.0% |
| !!! | ATATTTGATTTTGACATGTT+TGG | - | chr5.3:18178035-18178054 | MS.gene78956:intron | 20.0% |
| !!! | CATTTTTTGTTTGTTTGTTT+AGG | + | chr5.3:18177598-18177617 | None:intergenic | 20.0% |
| !!! | CTTTAAAAGGAAAATAATGT+TGG | + | chr5.3:18177937-18177956 | None:intergenic | 20.0% |
| !!! | TATAGTTTATTTGGTTTTAG+TGG | - | chr5.3:18177173-18177192 | MS.gene78956:intron | 20.0% |
| !!! | TTTAAACATGCTACAATTTT+AGG | + | chr5.3:18180560-18180579 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTTTGACATTCA+AGG | - | chr5.3:18179689-18179708 | MS.gene78956:intron | 20.0% |
| !!! | TTTGGATTTTATACTATACA+TGG | - | chr5.3:18179760-18179779 | MS.gene78956:intron | 20.0% |
| ! | AAAAAAGCAGCATGTATTTA+TGG | - | chr5.3:18177654-18177673 | MS.gene78956:intron | 25.0% |
| ! | AAAAAATAGCTTGAGTTTGT+TGG | - | chr5.3:18180078-18180097 | MS.gene78956:intron | 25.0% |
| ! | AACATTACTGGATCAATTTA+AGG | + | chr5.3:18180165-18180184 | None:intergenic | 25.0% |
| ! | AAGTTAAAGTGAAAAGGAAA+AGG | - | chr5.3:18177621-18177640 | MS.gene78956:intron | 25.0% |
| ! | ACTATAGGATGCAATTAAAA+TGG | + | chr5.3:18180419-18180438 | None:intergenic | 25.0% |
| ! | ATCTATAAATCTAACACCAT+TGG | + | chr5.3:18179928-18179947 | None:intergenic | 25.0% |
| ! | ATGGCAAAGTATATTATTAC+AGG | + | chr5.3:18178350-18178369 | None:intergenic | 25.0% |
| ! | ATTGAATGGTGATTTATGTT+TGG | + | chr5.3:18178195-18178214 | None:intergenic | 25.0% |
| ! | CATCAAGATAATACAAAACA+AGG | + | chr5.3:18177116-18177135 | None:intergenic | 25.0% |
| ! | CCAATAAAATAGTTAAGAGT+TGG | + | chr5.3:18180268-18180287 | None:intergenic | 25.0% |
| ! | CTTATTGTGTTAAATACATG+TGG | + | chr5.3:18180349-18180368 | None:intergenic | 25.0% |
| ! | GAACATCAACAAAATAAAGA+AGG | - | chr5.3:18179595-18179614 | MS.gene78956:intron | 25.0% |
| ! | GATGTAAATCAAACCATTTA+TGG | + | chr5.3:18178519-18178538 | None:intergenic | 25.0% |
| ! | TACTCTTTCTCTTTCTTATT+AGG | - | chr5.3:18177141-18177160 | MS.gene78956:CDS | 25.0% |
| ! | TGAAAAATCACAACATTCAA+AGG | + | chr5.3:18178317-18178336 | None:intergenic | 25.0% |
| ! | TGCAGATGATATGATTTAAT+TGG | + | chr5.3:18180519-18180538 | None:intergenic | 25.0% |
| ! | TGGAATAACAACATTAAATG+TGG | + | chr5.3:18180136-18180155 | None:intergenic | 25.0% |
| ! | TTCGACATTTATAAGGTAAT+AGG | - | chr5.3:18179200-18179219 | MS.gene78956:intron | 25.0% |
| ! | TTTGGATACATTGTAAAAGT+GGG | + | chr5.3:18178177-18178196 | None:intergenic | 25.0% |
| !! | ATTGTCATTTCTTTGATGTA+TGG | + | chr5.3:18177473-18177492 | None:intergenic | 25.0% |
| !! | CCAACTCTTAACTATTTTAT+TGG | - | chr5.3:18180265-18180284 | MS.gene78956:intron | 25.0% |
| !! | TACCTTTGTTTAGATTCTAT+TGG | - | chr5.3:18177701-18177720 | MS.gene78956:intron | 25.0% |
| !! | TTAACTTTGCTTTATTCTCA+TGG | - | chr5.3:18176815-18176834 | MS.gene78956:intron | 25.0% |
| !! | TTTAATCATTCGCATTTTGT+AGG | + | chr5.3:18179385-18179404 | None:intergenic | 25.0% |
| !! | TTTTTGCTTCGACATTTATA+AGG | - | chr5.3:18179193-18179212 | MS.gene78956:intron | 25.0% |
| !!! | AATGATTGATTCTCTAGTTT+TGG | - | chr5.3:18179742-18179761 | MS.gene78956:intron | 25.0% |
| !!! | ACATGCTAAATTATTTTGCA+GGG | - | chr5.3:18180634-18180653 | MS.gene78956:intron | 25.0% |
| !!! | CTCATTTTTTAAGATGCATT+TGG | - | chr5.3:18179290-18179309 | MS.gene78956:intron | 25.0% |
| !!! | GGATCAATTTAAGGTATTTT+TGG | + | chr5.3:18180156-18180175 | None:intergenic | 25.0% |
| AAAGTGAAAAGGAAAAGGAA+AGG | - | chr5.3:18177626-18177645 | MS.gene78956:intron | 30.0% | |
| AACCTCTCTTAATGGAAAAT+TGG | + | chr5.3:18179875-18179894 | None:intergenic | 30.0% | |
| AAGTGAAAAGGAAAAGGAAA+GGG | - | chr5.3:18177627-18177646 | MS.gene78956:intron | 30.0% | |
| AATCAGGACAATTGATAGAT+AGG | + | chr5.3:18181041-18181060 | None:intergenic | 30.0% | |
| AATCTCAGAGTTAATCTCAT+GGG | - | chr5.3:18176890-18176909 | MS.gene78956:intron | 30.0% | |
| ACTACCAAGAAGAAAAAGTT+AGG | + | chr5.3:18177727-18177746 | None:intergenic | 30.0% | |
| AGCAAAGTTAATCTTGCATA+AGG | + | chr5.3:18176806-18176825 | None:intergenic | 30.0% | |
| ATCAGGACAATTGATAGATA+GGG | + | chr5.3:18181040-18181059 | None:intergenic | 30.0% | |
| ATGCAAATTCATCCAAGAAA+TGG | - | chr5.3:18180792-18180811 | MS.gene78956:intron | 30.0% | |
| CTATTTACGTCATTCTCTAT+TGG | - | chr5.3:18179951-18179970 | MS.gene78956:intron | 30.0% | |
| GCAAAGTTAATCTTGCATAA+GGG | + | chr5.3:18176805-18176824 | None:intergenic | 30.0% | |
| GGATTAATTAGTCGAAATCA+CGG | - | chr5.3:18177359-18177378 | MS.gene78956:intron | 30.0% | |
| GTAGAAAGTAGATGAAGTTA+AGG | - | chr5.3:18177548-18177567 | MS.gene78956:intron | 30.0% | |
| GTTTCATCGGAATATACTAT+TGG | - | chr5.3:18178446-18178465 | MS.gene78956:intron | 30.0% | |
| GTTTGGATACATTGTAAAAG+TGG | + | chr5.3:18178178-18178197 | None:intergenic | 30.0% | |
| TAATCTCAGAGTTAATCTCA+TGG | - | chr5.3:18176889-18176908 | MS.gene78956:intron | 30.0% | |
| TATGTACATTGGTCCATAAA+TGG | - | chr5.3:18178503-18178522 | MS.gene78956:intron | 30.0% | |
| TCTCCTAAGTATACAAAACT+AGG | + | chr5.3:18179502-18179521 | None:intergenic | 30.0% | |
| TGAGAACGAAAATGTTATGA+TGG | - | chr5.3:18180611-18180630 | MS.gene78956:intron | 30.0% | |
| TGATCTCTTTGTTCAACTTA+AGG | - | chr5.3:18176865-18176884 | MS.gene78956:intron | 30.0% | |
| ! | AACCAATTTTCCATTAAGAG+AGG | - | chr5.3:18179870-18179889 | MS.gene78956:intron | 30.0% |
| ! | AATTTTCCATTAAGAGAGGT+TGG | - | chr5.3:18179874-18179893 | MS.gene78956:intron | 30.0% |
| ! | ATTGATCCAGTAATGTTTTG+AGG | - | chr5.3:18180168-18180187 | MS.gene78956:intron | 30.0% |
| ! | CTGCATAGTTTTTGCAAAAT+CGG | + | chr5.3:18177394-18177413 | None:intergenic | 30.0% |
| ! | GATAAATGTATGTTTGGTTC+CGG | - | chr5.3:18177976-18177995 | MS.gene78956:intron | 30.0% |
| ! | TATTTTGTTGATGTTCTGCA+TGG | + | chr5.3:18179591-18179610 | None:intergenic | 30.0% |
| ! | TCTAACACCATTGGATTTTA+TGG | + | chr5.3:18179919-18179938 | None:intergenic | 30.0% |
| !! | AACTTGGTCTTGAACATTTA+GGG | + | chr5.3:18181194-18181213 | None:intergenic | 30.0% |
| !! | AGGAAAATAATGTTGGTAGT+AGG | + | chr5.3:18177930-18177949 | None:intergenic | 30.0% |
| !! | ATTTGCTTTGGAAGTTTCAT+CGG | - | chr5.3:18178433-18178452 | MS.gene78956:intron | 30.0% |
| !! | GACATGCTAAATTATTTTGC+AGG | - | chr5.3:18180633-18180652 | MS.gene78956:intron | 30.0% |
| !! | GGAAAATAATGTTGGTAGTA+GGG | + | chr5.3:18177929-18177948 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTGGTGTTTTTG+TGG | - | chr5.3:18177859-18177878 | MS.gene78956:intron | 30.0% |
| !!! | AGTTTTTTGGTGTTTTTGTG+GGG | - | chr5.3:18177861-18177880 | MS.gene78956:intron | 30.0% |
| !!! | ATGCCTAGTTTTGTATACTT+AGG | - | chr5.3:18179496-18179515 | MS.gene78956:intron | 30.0% |
| !!! | ATTTTGATTCCAGACTTTGT+CGG | + | chr5.3:18180852-18180871 | None:intergenic | 30.0% |
| !!! | GAGTTTTTTGGTGTTTTTGT+GGG | - | chr5.3:18177860-18177879 | MS.gene78956:intron | 30.0% |
| AAAGCTTTCAAAGAACACCA+AGG | + | chr5.3:18177894-18177913 | None:intergenic | 35.0% | |
| AAGCTTTCAAAGAACACCAA+GGG | + | chr5.3:18177893-18177912 | None:intergenic | 35.0% | |
| AATGAGTTATCATCAGGATG+AGG | + | chr5.3:18176722-18176741 | None:intergenic | 35.0% | |
| ACATCCAATGAGTTATCATC+AGG | + | chr5.3:18176728-18176747 | None:intergenic | 35.0% | |
| ACCAATGCCATAAAATCCAA+TGG | - | chr5.3:18179909-18179928 | MS.gene78956:intron | 35.0% | |
| AGGAAGACGTAATCTTATAC+GGG | - | chr5.3:18179051-18179070 | MS.gene78956:intron | 35.0% | |
| AGGAGATCACCATCATAATT+AGG | - | chr5.3:18180188-18180207 | MS.gene78956:intron | 35.0% | |
| AGGTATGACTATTCTGGATA+TGG | - | chr5.3:18178756-18178775 | MS.gene78956:CDS | 35.0% | |
| ATAGATGGCGTATGTAATCA+GGG | + | chr5.3:18180774-18180793 | None:intergenic | 35.0% | |
| ATCTCAGAGTTAATCTCATG+GGG | - | chr5.3:18176891-18176910 | MS.gene78956:intron | 35.0% | |
| CAGGAAGACGTAATCTTATA+CGG | - | chr5.3:18179050-18179069 | MS.gene78956:intron | 35.0% | |
| CATTTGAGTCACATTTGCTT+TGG | - | chr5.3:18178421-18178440 | MS.gene78956:intron | 35.0% | |
| CCAAAACAATCTGTGAACTT+CGG | + | chr5.3:18181102-18181121 | None:intergenic | 35.0% | |
| CTTACATGTATTACAAGGAC+AGG | + | chr5.3:18179629-18179648 | None:intergenic | 35.0% | |
| CTTCTTGTTGACACAAAACA+TGG | - | chr5.3:18176749-18176768 | MS.gene78956:intron | 35.0% | |
| CTTGAAACCAAATATGGAGT+TGG | - | chr5.3:18179026-18179045 | MS.gene78956:CDS | 35.0% | |
| CTTGGATGAATTTGCATAGA+TGG | + | chr5.3:18180789-18180808 | None:intergenic | 35.0% | |
| GAATGCCTTGAAACCAAATA+TGG | - | chr5.3:18179020-18179039 | MS.gene78956:intron | 35.0% | |
| GAGATCACCATCATAATTAG+GGG | - | chr5.3:18180190-18180209 | MS.gene78956:intron | 35.0% | |
| GGAGATCACCATCATAATTA+GGG | - | chr5.3:18180189-18180208 | MS.gene78956:intron | 35.0% | |
| GGCCAATAGAATCTAAACAA+AGG | + | chr5.3:18177706-18177725 | None:intergenic | 35.0% | |
| TAACCTACCCCTAATTATGA+TGG | + | chr5.3:18180200-18180219 | None:intergenic | 35.0% | |
| TAATACAAAACAAGGGTCAG+TGG | + | chr5.3:18177108-18177127 | None:intergenic | 35.0% | |
| TATGAACCCTTATGGATCAA+AGG | - | chr5.3:18180721-18180740 | MS.gene78956:intron | 35.0% | |
| TCATCCTGATGATAACTCAT+TGG | - | chr5.3:18176721-18176740 | MS.gene78956:CDS | 35.0% | |
| TCTAACTTGATGCGAGAATT+TGG | - | chr5.3:18178096-18178115 | MS.gene78956:intron | 35.0% | |
| TGATCTCCTCAAAACATTAC+TGG | + | chr5.3:18180177-18180196 | None:intergenic | 35.0% | |
| TGATGTGCATGTTTGGTATA+AGG | - | chr5.3:18177338-18177357 | MS.gene78956:intron | 35.0% | |
| TTAATTAGTCGAAATCACGG+TGG | - | chr5.3:18177362-18177381 | MS.gene78956:intron | 35.0% | |
| TTATCATCAGGATGAGGAAT+CGG | + | chr5.3:18176716-18176735 | None:intergenic | 35.0% | |
| TTGTCATCTTCTCCATTTCT+TGG | + | chr5.3:18180807-18180826 | None:intergenic | 35.0% | |
| ! | ACCATTGGATTTTATGGCAT+TGG | + | chr5.3:18179913-18179932 | None:intergenic | 35.0% |
| ! | CAACAAGGCAATGAACATTT+TGG | + | chr5.3:18181168-18181187 | None:intergenic | 35.0% |
| ! | CAACTCCATATTTGGTTTCA+AGG | + | chr5.3:18179028-18179047 | None:intergenic | 35.0% |
| ! | CATTTTGGACAACAACAACT+AGG | + | chr5.3:18181153-18181172 | None:intergenic | 35.0% |
| !! | AGTTAGTTCTGTTGCAATGA+TGG | - | chr5.3:18178824-18178843 | MS.gene78956:intron | 35.0% |
| !! | CAACTTGGTCTTGAACATTT+AGG | + | chr5.3:18181195-18181214 | None:intergenic | 35.0% |
| !! | GTGAGTATGTGTTTTAGATC+TGG | - | chr5.3:18177283-18177302 | MS.gene78956:intron | 35.0% |
| !! | TGGGTTGATCAGAAAATTTG+AGG | + | chr5.3:18178158-18178177 | None:intergenic | 35.0% |
| !! | TTGGCCTAACTTTTTCTTCT+TGG | - | chr5.3:18177720-18177739 | MS.gene78956:intron | 35.0% |
| !!! | GGACATAGCATAGAGTTTTT+TGG | - | chr5.3:18177848-18177867 | MS.gene78956:intron | 35.0% |
| AAGTGGACCAACATTGCATT+TGG | - | chr5.3:18179085-18179104 | MS.gene78956:intron | 40.0% | |
| AATCTGTGAACTTCGGTAAG+CGG | + | chr5.3:18181095-18181114 | None:intergenic | 40.0% | |
| ACCATCCTGCTTGAATTTCA+TGG | - | chr5.3:18179799-18179818 | MS.gene78956:intron | 40.0% | |
| ACCATGAAATTCAAGCAGGA+TGG | + | chr5.3:18179803-18179822 | None:intergenic | 40.0% | |
| ACGACTAGAGAAAGAACACA+AGG | + | chr5.3:18179833-18179852 | None:intergenic | 40.0% | |
| AGCTACCATGAAATTCAAGC+AGG | + | chr5.3:18179807-18179826 | None:intergenic | 40.0% | |
| ATAGACCGTCAAGAGTCAAT+TGG | + | chr5.3:18178553-18178572 | None:intergenic | 40.0% | |
| ATCCAGAATAGTCATACCTG+CGG | + | chr5.3:18178755-18178774 | None:intergenic | 40.0% | |
| ATCCATGTAGGGGTAAAAAC+TGG | + | chr5.3:18177826-18177845 | None:intergenic | 40.0% | |
| ATCTTATACGGGCAATCAGT+TGG | - | chr5.3:18179062-18179081 | MS.gene78956:intron | 40.0% | |
| ATGAAATTCAAGCAGGATGG+TGG | + | chr5.3:18179800-18179819 | None:intergenic | 40.0% | |
| ATGTAGCCAACCTCTCTTAA+TGG | + | chr5.3:18179883-18179902 | None:intergenic | 40.0% | |
| CAAAAAGATCCGACAAAGTC+TGG | - | chr5.3:18180840-18180859 | MS.gene78956:intron | 40.0% | |
| CAGAAGATGACGTAGTCAAT+TGG | - | chr5.3:18180659-18180678 | MS.gene78956:intron | 40.0% | |
| CAGCTGAAGAAGAATGATGA+TGG | - | chr5.3:18176662-18176681 | MS.gene78956:CDS | 40.0% | |
| CATAGATGGCGTATGTAATC+AGG | + | chr5.3:18180775-18180794 | None:intergenic | 40.0% | |
| CATCAAGTTAGAGTCAGTTC+TGG | + | chr5.3:18178088-18178107 | None:intergenic | 40.0% | |
| CGGTAGACCTTAAAATCTAC+AGG | + | chr5.3:18179984-18180003 | None:intergenic | 40.0% | |
| CGTATAAGATTACGTCTTCC+TGG | + | chr5.3:18179052-18179071 | None:intergenic | 40.0% | |
| GACGTAGTCAATTGGTTACA+TGG | - | chr5.3:18180667-18180686 | MS.gene78956:intron | 40.0% | |
| GCTTGAATTTCATGGTAGCT+AGG | - | chr5.3:18179807-18179826 | MS.gene78956:intron | 40.0% | |
| GTAGATGAAGTTAAGGCTTC+TGG | - | chr5.3:18177555-18177574 | MS.gene78956:intron | 40.0% | |
| GTGAATGTGATGTGCATGTT+TGG | - | chr5.3:18177331-18177350 | MS.gene78956:intron | 40.0% | |
| GTGCAGGATAAGAAAATGCT+TGG | + | chr5.3:18178295-18178314 | None:intergenic | 40.0% | |
| TACCGCCTCTAACAAATGTA+TGG | - | chr5.3:18179999-18180018 | MS.gene78956:intron | 40.0% | |
| TAGATCCCACATCTAGTGTT+GGG | - | chr5.3:18180321-18180340 | MS.gene78956:intron | 40.0% | |
| TCAATTGTCCTGATTGTTGC+TGG | - | chr5.3:18181046-18181065 | MS.gene78956:CDS | 40.0% | |
| TCACCATCATAATTAGGGGT+AGG | - | chr5.3:18180194-18180213 | MS.gene78956:intron | 40.0% | |
| TGCAGCAACACTTCATACTA+GGG | + | chr5.3:18180906-18180925 | None:intergenic | 40.0% | |
| TTCTTCTTCAGCTGATACGT+TGG | + | chr5.3:18176656-18176675 | None:intergenic | 40.0% | |
| TTGTTGATGTTCTGCATGGT+CGG | + | chr5.3:18179587-18179606 | None:intergenic | 40.0% | |
| TTTGATGTATGGTATCACCG+TGG | + | chr5.3:18177462-18177481 | None:intergenic | 40.0% | |
| ! | ATCACAACATTCAAAGGTGC+AGG | + | chr5.3:18178311-18178330 | None:intergenic | 40.0% |
| ! | ATTTTGCCTCCTCCAAAAAC+CGG | + | chr5.3:18177998-18178017 | None:intergenic | 40.0% |
| ! | CACCATACATTTGTTAGAGG+CGG | + | chr5.3:18180004-18180023 | None:intergenic | 40.0% |
| ! | CAGCTTTAGTCTAGAAATGC+TGG | + | chr5.3:18178696-18178715 | None:intergenic | 40.0% |
| ! | CCGAAGTTCACAGATTGTTT+TGG | - | chr5.3:18181099-18181118 | MS.gene78956:CDS | 40.0% |
| ! | CTGCACCATACATTTGTTAG+AGG | + | chr5.3:18180007-18180026 | None:intergenic | 40.0% |
| ! | GAACATTTAGGGTAGCAACA+AGG | + | chr5.3:18181183-18181202 | None:intergenic | 40.0% |
| ! | GACTTTGTCGGATCTTTTTG+AGG | + | chr5.3:18180840-18180859 | None:intergenic | 40.0% |
| ! | GTTTGCCAATTGACTCTTGA+CGG | - | chr5.3:18178545-18178564 | MS.gene78956:intron | 40.0% |
| ! | TCGATGGCCTGTAGATTTTA+AGG | - | chr5.3:18179974-18179993 | MS.gene78956:intron | 40.0% |
| ! | TGTGGGATCTAGTTCCAAAA+TGG | + | chr5.3:18180312-18180331 | None:intergenic | 40.0% |
| ! | TTCCAGTTTTTACCCCTACA+TGG | - | chr5.3:18177821-18177840 | MS.gene78956:intron | 40.0% |
| ! | TTTTTACCCCTACATGGATG+TGG | - | chr5.3:18177827-18177846 | MS.gene78956:intron | 40.0% |
| !! | AAGTTAGAGTCAGTTCTGGA+AGG | + | chr5.3:18178084-18178103 | None:intergenic | 40.0% |
| !! | GAATGATGATGGCAAACTCA+CGG | - | chr5.3:18176673-18176692 | MS.gene78956:CDS | 40.0% |
| !! | GTATGTTTGGTTCCGGTTTT+TGG | - | chr5.3:18177983-18178002 | MS.gene78956:intron | 40.0% |
| !!! | ACGTTTTTTTTTCTTCCCGC+AGG | - | chr5.3:18178736-18178755 | MS.gene78956:CDS | 40.0% |
| !!! | TTTTGGTGTTTTTGTGGGGA+TGG | - | chr5.3:18177865-18177884 | MS.gene78956:intron | 40.0% |
| AACCAAATATGGAGTTGGCC+AGG | - | chr5.3:18179031-18179050 | MS.gene78956:CDS | 45.0% | |
| ACCGACTATGGAAAATGGCA+AGG | - | chr5.3:18180692-18180711 | MS.gene78956:intron | 45.0% | |
| ACCGTGGTTACTCGAAATCA+CGG | + | chr5.3:18177446-18177465 | None:intergenic | 45.0% | |
| ATGTTCTGCATGGTCGGAAA+AGG | + | chr5.3:18179581-18179600 | None:intergenic | 45.0% | |
| CAAAGAATAGCCTACCTTGC+CGG | + | chr5.3:18178790-18178809 | None:intergenic | 45.0% | |
| CAGCACATATGCTGACATAG+AGG | - | chr5.3:18178989-18179008 | MS.gene78956:intron | 45.0% | |
| CATACTAGGGCATGTACATG+TGG | + | chr5.3:18180893-18180912 | None:intergenic | 45.0% | |
| CCGACTATGGAAAATGGCAA+GGG | - | chr5.3:18180693-18180712 | MS.gene78956:intron | 45.0% | |
| CGTCATTCTCTATTGGTCGA+TGG | - | chr5.3:18179958-18179977 | MS.gene78956:intron | 45.0% | |
| CTAGATCCCACATCTAGTGT+TGG | - | chr5.3:18180320-18180339 | MS.gene78956:intron | 45.0% | |
| CTAGGTTTCCAGCAACAATC+AGG | + | chr5.3:18181057-18181076 | None:intergenic | 45.0% | |
| CTATGTCCACATCCATGTAG+GGG | + | chr5.3:18177836-18177855 | None:intergenic | 45.0% | |
| CTCTATGTCAGCATATGTGC+TGG | + | chr5.3:18178991-18179010 | None:intergenic | 45.0% | |
| CTGCAGCAACACTTCATACT+AGG | + | chr5.3:18180907-18180926 | None:intergenic | 45.0% | |
| CTTCACAGCGGAATTCTTTC+TGG | - | chr5.3:18179140-18179159 | MS.gene78956:intron | 45.0% | |
| GAAAATGCTTGGCGTGTGTA+TGG | + | chr5.3:18178284-18178303 | None:intergenic | 45.0% | |
| GAACCCTTATGGATCAAAGG+AGG | - | chr5.3:18180724-18180743 | MS.gene78956:intron | 45.0% | |
| GCATATGTGCTGGATTCACT+AGG | + | chr5.3:18178981-18179000 | None:intergenic | 45.0% | |
| GCTATGTCCACATCCATGTA+GGG | + | chr5.3:18177837-18177856 | None:intergenic | 45.0% | |
| GGGAGTCATATGAACCCTTA+TGG | - | chr5.3:18180713-18180732 | MS.gene78956:intron | 45.0% | |
| TCCAGAATAGTCATACCTGC+GGG | + | chr5.3:18178754-18178773 | None:intergenic | 45.0% | |
| TGCTATGTCCACATCCATGT+AGG | + | chr5.3:18177838-18177857 | None:intergenic | 45.0% | |
| TGGCAACCGACTATGGAAAA+TGG | - | chr5.3:18180687-18180706 | MS.gene78956:intron | 45.0% | |
| TGGTTACTCGAAATCACGGT+GGG | + | chr5.3:18177442-18177461 | None:intergenic | 45.0% | |
| TGTTCTGCATGGTCGGAAAA+GGG | + | chr5.3:18179580-18179599 | None:intergenic | 45.0% | |
| TTCCTGGCCAACTCCATATT+TGG | + | chr5.3:18179036-18179055 | None:intergenic | 45.0% | |
| TTCTTCAGCTGATACGTTGG+TGG | + | chr5.3:18176653-18176672 | None:intergenic | 45.0% | |
| TTGGCTGCCAAATGCAATGT+TGG | + | chr5.3:18179095-18179114 | None:intergenic | 45.0% | |
| ! | ACCGTGATTTCGAGTAACCA+CGG | - | chr5.3:18177442-18177461 | MS.gene78956:intron | 45.0% |
| ! | GCACATGTGTCTCACCATTT+TGG | - | chr5.3:18180295-18180314 | MS.gene78956:intron | 45.0% |
| ! | GGAGGAGGCAAAATTGATTC+TGG | - | chr5.3:18178004-18178023 | MS.gene78956:intron | 45.0% |
| !! | CATGGCAATGCTGCTGATTT+AGG | - | chr5.3:18176833-18176852 | MS.gene78956:intron | 45.0% |
| !! | TGTTTGGTTCCGGTTTTTGG+AGG | - | chr5.3:18177986-18178005 | MS.gene78956:intron | 45.0% |
| !!! | CCCTTGCCATTTTCCATAGT+CGG | + | chr5.3:18180696-18180715 | None:intergenic | 45.0% |
| !!! | AATGATTAAATTATATATTT+TGG | - | chr5.3:18179395-18179414 | MS.gene78956:intron | 5.0% |
| ACCGCCTCCTTTGATCCATA+AGG | + | chr5.3:18180731-18180750 | None:intergenic | 50.0% | |
| AGGATGAGGAATCGGAGAAG+CGG | + | chr5.3:18176708-18176727 | None:intergenic | 50.0% | |
| CCCTTATGGATCAAAGGAGG+CGG | - | chr5.3:18180727-18180746 | MS.gene78956:intron | 50.0% | |
| CCGCCTCCTTTGATCCATAA+GGG | + | chr5.3:18180730-18180749 | None:intergenic | 50.0% | |
| CGGCAACACTTGATACAGCT+AGG | + | chr5.3:18181075-18181094 | None:intergenic | 50.0% | |
| CGGCAAGGTAGGCTATTCTT+TGG | - | chr5.3:18178788-18178807 | MS.gene78956:CDS | 50.0% | |
| GGTTACATGGCAACCGACTA+TGG | - | chr5.3:18180680-18180699 | MS.gene78956:intron | 50.0% | |
| GTGGTTACTCGAAATCACGG+TGG | + | chr5.3:18177443-18177462 | None:intergenic | 50.0% | |
| TACGGGCAATCAGTTGGAAG+TGG | - | chr5.3:18179068-18179087 | MS.gene78956:intron | 50.0% | |
| TCCCGCAGGTATGACTATTC+TGG | - | chr5.3:18178750-18178769 | MS.gene78956:CDS | 50.0% | |
| TCTGGATATGGTGCCTCTAC+CGG | - | chr5.3:18178768-18178787 | MS.gene78956:CDS | 50.0% | |
| TGGAGCCCAACACTAGATGT+GGG | + | chr5.3:18180329-18180348 | None:intergenic | 50.0% | |
| TGTTTAGGGAAGACACCCTC+TGG | + | chr5.3:18177583-18177602 | None:intergenic | 50.0% | |
| TTAAGGCTTCTGGCACCAGA+GGG | - | chr5.3:18177565-18177584 | MS.gene78956:intron | 50.0% | |
| ! | CTGCAGCAGCTAGAGCATTT+AGG | + | chr5.3:18180946-18180965 | None:intergenic | 50.0% |
| !! | AGCTGATACGTTGGTGGTGA+AGG | + | chr5.3:18176647-18176666 | None:intergenic | 50.0% |
| !! | TGATACGTTGGTGGTGAAGG+TGG | + | chr5.3:18176644-18176663 | None:intergenic | 50.0% |
| !! | TGATGATGGCAAACTCACGG+TGG | - | chr5.3:18176676-18176695 | MS.gene78956:CDS | 50.0% |
| !! | TTGGTTCCGGTTTTTGGAGG+AGG | - | chr5.3:18177989-18178008 | MS.gene78956:intron | 50.0% |
| ATAGCCTACCTTGCCGGTAG+AGG | + | chr5.3:18178784-18178803 | None:intergenic | 55.0% | |
| ATATGGTGCCTCTACCGGCA+AGG | - | chr5.3:18178773-18178792 | MS.gene78956:CDS | 55.0% | |
| ATGAGGAATCGGAGAAGCGG+TGG | + | chr5.3:18176705-18176724 | None:intergenic | 55.0% | |
| ATTTGGCAGCCAAGTTGCCG+AGG | - | chr5.3:18179102-18179121 | MS.gene78956:intron | 55.0% | |
| CACGCACACAGACACTCACA+AGG | - | chr5.3:18178867-18178886 | MS.gene78956:intron | 55.0% | |
| GTGGAGCCCAACACTAGATG+TGG | + | chr5.3:18180330-18180349 | None:intergenic | 55.0% | |
| GTTAAGGCTTCTGGCACCAG+AGG | - | chr5.3:18177564-18177583 | MS.gene78956:intron | 55.0% | |
| ! | AGAGGCGTGGTTCTTCACAG+CGG | - | chr5.3:18179128-18179147 | MS.gene78956:intron | 55.0% |
| ! | TTTTGTGGGGATGGAGCCCT+TGG | - | chr5.3:18177874-18177893 | MS.gene78956:intron | 55.0% |
| AGAACCACGCCTCTCAGCCT+CGG | + | chr5.3:18179122-18179141 | None:intergenic | 60.0% | |
| GCCAAGTTGCCGAGGCTGAG+AGG | - | chr5.3:18179110-18179129 | MS.gene78956:intron | 65.0% | |
| GCCTCTCAGCCTCGGCAACT+TGG | + | chr5.3:18179114-18179133 | None:intergenic | 65.0% | |
| GGTGCCTCTACCGGCAAGGT+AGG | - | chr5.3:18178777-18178796 | MS.gene78956:CDS | 65.0% | |
| GTTGCCGAGGCTGAGAGGCG+TGG | - | chr5.3:18179115-18179134 | MS.gene78956:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18176596 | 18181222 | 18176596 | ID=MS.gene78956 |
| chr5.3 | mRNA | 18176596 | 18181222 | 18176596 | ID=MS.gene78956.t1;Parent=MS.gene78956 |
| chr5.3 | exon | 18180906 | 18181222 | 18180906 | ID=MS.gene78956.t1.exon1;Parent=MS.gene78956.t1 |
| chr5.3 | CDS | 18180906 | 18181222 | 18180906 | ID=cds.MS.gene78956.t1;Parent=MS.gene78956.t1 |
| chr5.3 | exon | 18179024 | 18179060 | 18179024 | ID=MS.gene78956.t1.exon2;Parent=MS.gene78956.t1 |
| chr5.3 | CDS | 18179024 | 18179060 | 18179024 | ID=cds.MS.gene78956.t1;Parent=MS.gene78956.t1 |
| chr5.3 | exon | 18178604 | 18178840 | 18178604 | ID=MS.gene78956.t1.exon3;Parent=MS.gene78956.t1 |
| chr5.3 | CDS | 18178604 | 18178840 | 18178604 | ID=cds.MS.gene78956.t1;Parent=MS.gene78956.t1 |
| chr5.3 | exon | 18178175 | 18178222 | 18178175 | ID=MS.gene78956.t1.exon4;Parent=MS.gene78956.t1 |
| chr5.3 | CDS | 18178175 | 18178222 | 18178175 | ID=cds.MS.gene78956.t1;Parent=MS.gene78956.t1 |
| chr5.3 | exon | 18176923 | 18177163 | 18176923 | ID=MS.gene78956.t1.exon5;Parent=MS.gene78956.t1 |
| chr5.3 | CDS | 18176923 | 18177163 | 18176923 | ID=cds.MS.gene78956.t1;Parent=MS.gene78956.t1 |
| chr5.3 | exon | 18176596 | 18176741 | 18176596 | ID=MS.gene78956.t1.exon6;Parent=MS.gene78956.t1 |
| chr5.3 | CDS | 18176596 | 18176741 | 18176596 | ID=cds.MS.gene78956.t1;Parent=MS.gene78956.t1 |
| Gene Sequence |
| Protein sequence |
