Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80093.t1 | RHN82068.1 | 92.1 | 239 | 19 | 0 | 1 | 239 | 7 | 245 | 2.20E-114 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80093.t1 | Q9M651 | 72.0 | 236 | 64 | 1 | 5 | 238 | 5 | 240 | 6.0e-89 | 329.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80093.t1 | G7IE29 | 92.1 | 239 | 19 | 0 | 1 | 239 | 1 | 239 | 1.6e-114 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene80093 | 0.834934 | 2.25E-56 | -1.69E-46 |
| MS.gene05462 | MS.gene80093 | 0.809946 | 1.47E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene80093 | 0.811262 | 7.65E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene80093 | 0.808397 | 3.16E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene80093 | 0.814221 | 1.72E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene80093 | 0.808341 | 3.25E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene80093 | 0.802287 | 6.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043645 | MS.gene80093 | PPI |
| MS.gene80093 | MS.gene064351 | PPI |
| MS.gene80093 | MS.gene043593 | PPI |
| MS.gene80093 | MS.gene73093 | PPI |
| MS.gene064353 | MS.gene80093 | PPI |
| MS.gene80093 | MS.gene035825 | PPI |
| MS.gene80093 | MS.gene043643 | PPI |
| MS.gene035826 | MS.gene80093 | PPI |
| MS.gene035828 | MS.gene80093 | PPI |
| MS.gene99872 | MS.gene80093 | PPI |
| MS.gene80093 | MS.gene043595 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80093.t1 | MTR_1g105040 | 94.747 | 533 | 28 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1008 |
| MS.gene80093.t1 | MTR_1g072250 | 67.932 | 527 | 167 | 2 | 6 | 532 | 9 | 533 | 0.0 | 702 |
| MS.gene80093.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 217 | 485 | 27 | 295 | 1.66e-22 | 100 |
| MS.gene80093.t1 | MTR_5g035590 | 26.552 | 290 | 202 | 3 | 219 | 498 | 1 | 289 | 4.81e-20 | 93.2 |
| MS.gene80093.t1 | MTR_5g035590 | 26.230 | 305 | 212 | 5 | 181 | 481 | 52 | 347 | 4.74e-18 | 87.0 |
| MS.gene80093.t1 | MTR_5g035590 | 25.940 | 266 | 165 | 4 | 208 | 441 | 157 | 422 | 2.74e-12 | 69.3 |
| MS.gene80093.t1 | MTR_5g035590 | 27.138 | 269 | 196 | 0 | 217 | 485 | 204 | 472 | 2.32e-22 | 101 |
| MS.gene80093.t1 | MTR_5g035590 | 26.441 | 295 | 206 | 3 | 214 | 498 | 173 | 466 | 7.99e-21 | 96.7 |
| MS.gene80093.t1 | MTR_5g035590 | 26.230 | 305 | 212 | 5 | 181 | 481 | 229 | 524 | 5.44e-18 | 87.8 |
| MS.gene80093.t1 | MTR_5g035590 | 26.068 | 234 | 143 | 2 | 214 | 445 | 398 | 603 | 2.33e-12 | 70.1 |
| MS.gene80093.t1 | MTR_3g102500 | 37.719 | 114 | 64 | 4 | 6 | 116 | 26 | 135 | 1.24e-14 | 72.0 |
| MS.gene80093.t1 | MTR_1g018710 | 34.118 | 85 | 54 | 1 | 14 | 98 | 28 | 110 | 3.72e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80093.t1 | AT5G19320 | 71.084 | 498 | 141 | 2 | 5 | 499 | 5 | 502 | 0.0 | 665 |
| MS.gene80093.t1 | AT5G19320 | 71.084 | 498 | 141 | 2 | 5 | 499 | 5 | 502 | 0.0 | 665 |
| MS.gene80093.t1 | AT3G63130 | 63.783 | 497 | 174 | 2 | 6 | 502 | 9 | 499 | 0.0 | 631 |
| MS.gene80093.t1 | AT3G63130 | 63.783 | 497 | 174 | 2 | 6 | 502 | 9 | 499 | 0.0 | 631 |
| MS.gene80093.t1 | AT3G06000 | 50.543 | 184 | 78 | 2 | 319 | 502 | 16 | 186 | 4.55e-50 | 171 |
| MS.gene80093.t1 | AT1G10510 | 29.197 | 274 | 194 | 0 | 217 | 490 | 203 | 476 | 2.97e-26 | 113 |
| MS.gene80093.t1 | AT1G10510 | 26.603 | 312 | 194 | 5 | 202 | 481 | 215 | 523 | 1.13e-20 | 96.3 |
| MS.gene80093.t1 | AT1G10510 | 29.341 | 167 | 117 | 1 | 214 | 379 | 397 | 563 | 2.95e-11 | 66.6 |
| MS.gene80093.t1 | AT5G43070 | 35.955 | 89 | 55 | 1 | 10 | 98 | 40 | 126 | 1.95e-12 | 65.9 |
| MS.gene80093.t1 | AT1G47200 | 37.079 | 89 | 54 | 1 | 10 | 98 | 56 | 142 | 2.49e-12 | 65.9 |
Find 124 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGCAGCTTTGTGATTTC+AGG | 0.102371 | 1.1:-75226062 | None:intergenic |
| AACTACAAGGTTCTTCATTT+TGG | 0.114174 | 1.1:-75226931 | None:intergenic |
| AGAAGGCCTTTCACAATTAA+AGG | 0.166905 | 1.1:+75226656 | MS.gene80093:CDS |
| CCTCCTAGAACTTCTTAAAA+TGG | 0.195867 | 1.1:+75225633 | MS.gene80093:CDS |
| GTTGCCTTATCTGATGCTTT+AGG | 0.238271 | 1.1:+75226297 | MS.gene80093:CDS |
| ACATCAAGTGCTTCTGCTTC+TGG | 0.239334 | 1.1:-75225937 | None:intergenic |
| CTTCTAAAGCCTTACTTATC+TGG | 0.252450 | 1.1:-75226638 | None:intergenic |
| TGCTTCAGCAACAGAAGTTT+TGG | 0.256040 | 1.1:+75225823 | MS.gene80093:CDS |
| TGAAGGTATTAAAGAGTTAA+TGG | 0.272016 | 1.1:+75226794 | MS.gene80093:CDS |
| TTGCCTTATCTGATGCTTTA+GGG | 0.286750 | 1.1:+75226298 | MS.gene80093:CDS |
| CAGTCATATTATTATGAAAA+TGG | 0.290406 | 1.1:-75226176 | None:intergenic |
| CTCCTTCGTCTTCCAAGTTC+AGG | 0.291124 | 1.1:-75226440 | None:intergenic |
| CTGGCTCTTCCTCATAATAT+TGG | 0.309459 | 1.1:-75225558 | None:intergenic |
| AACCTTTCTGACAATGCTTT+AGG | 0.321520 | 1.1:+75226009 | MS.gene80093:CDS |
| TCTTATGAATGATGGAATTT+CGG | 0.329307 | 1.1:+75226095 | MS.gene80093:CDS |
| GGCCGTTCTCAATCAAATTA+TGG | 0.332398 | 1.1:+75225380 | MS.gene80093:CDS |
| GAGAAAGGTGTTAGAGCATT+TGG | 0.354722 | 1.1:+75226033 | MS.gene80093:CDS |
| AGGCTGAAGAAAATGCTAAA+AGG | 0.365052 | 1.1:+75225506 | MS.gene80093:CDS |
| TGTGAAGCGTTCTTCTTCCT+TGG | 0.371026 | 1.1:+75226230 | MS.gene80093:CDS |
| GAGGAGCTTACTGCACTCTT+TGG | 0.371741 | 1.1:-75225614 | None:intergenic |
| GCAAATCAAGCTTCCTCAAA+TGG | 0.375174 | 1.1:-75226329 | None:intergenic |
| CTCTCTTAACTCTGCATGCC+TGG | 0.379225 | 1.1:-75226403 | None:intergenic |
| TGCTATAGCTAATGCTCTTA+AGG | 0.382686 | 1.1:+75226467 | MS.gene80093:CDS |
| CACTCATCTCGAGAACTTCA+AGG | 0.389478 | 1.1:-75226503 | None:intergenic |
| CACCTAAAGCATTGTCAGAA+AGG | 0.404264 | 1.1:-75226011 | None:intergenic |
| GATTTGCGAGACAACATGTT+AGG | 0.409608 | 1.1:+75226345 | MS.gene80093:CDS |
| TAAAACCTTGGACCTGAAAC+AGG | 0.414863 | 1.1:+75225486 | MS.gene80093:CDS |
| CAGATAAGTAAGGCTTTAGA+AGG | 0.414903 | 1.1:+75226639 | MS.gene80093:CDS |
| ATATTCTCGGCTGCTCTAGA+AGG | 0.421463 | 1.1:+75225967 | MS.gene80093:CDS |
| CTCCTAGAACTTCTTAAAAT+GGG | 0.426591 | 1.1:+75225634 | MS.gene80093:CDS |
| TTCAGCCTGTTTCAGGTCCA+AGG | 0.427542 | 1.1:-75225491 | None:intergenic |
| ACAGGTCTACTTCTTTCAAC+TGG | 0.428841 | 1.1:-75225894 | None:intergenic |
| GAATTACCCGGCTCCTTCAA+TGG | 0.430139 | 1.1:-75225787 | None:intergenic |
| TTCTTTCAACTGGTCCTTGA+GGG | 0.434126 | 1.1:-75225884 | None:intergenic |
| TGGAGCTGAATTTGCAGAAC+AGG | 0.435691 | 1.1:+75225359 | MS.gene80093:CDS |
| ATACCTGAGCTTCCTGAACT+TGG | 0.437940 | 1.1:+75226428 | MS.gene80093:CDS |
| CAAGAAACTGCTTAGCTGCT+AGG | 0.452521 | 1.1:-75226569 | None:intergenic |
| TCTTTGACACCGTTCCTACT+AGG | 0.454987 | 1.1:-75225658 | None:intergenic |
| TTCTTAAAATGGGTCCTAGT+AGG | 0.457891 | 1.1:+75225644 | MS.gene80093:CDS |
| GAAGCGTTCTTCTTCCTTGG+AGG | 0.458045 | 1.1:+75226233 | MS.gene80093:CDS |
| GACAATGCTTTAGGTGAGAA+AGG | 0.459821 | 1.1:+75226018 | MS.gene80093:CDS |
| GAGCTTTATCTTATGAATGA+TGG | 0.460582 | 1.1:+75226087 | MS.gene80093:CDS |
| AATAATATGACTGGAGATGA+AGG | 0.462940 | 1.1:+75226186 | MS.gene80093:CDS |
| TCTGTGTTTGATATATCTAA+AGG | 0.465425 | 1.1:+75225718 | MS.gene80093:CDS |
| CGTTGTTCCTCCACAAGGAT+AGG | 0.465776 | 1.1:+75226261 | MS.gene80093:CDS |
| TCTAATGGACCAAGCTTGTC+CGG | 0.467253 | 1.1:-75226834 | None:intergenic |
| CAAATCAAGCTTCCTCAAAT+GGG | 0.468726 | 1.1:-75226328 | None:intergenic |
| CAGAGACGGAGCTCGACAAT+TGG | 0.473910 | 1.1:+75226707 | MS.gene80093:CDS |
| TTCCTCATAATATTGGTTTG+CGG | 0.475757 | 1.1:-75225551 | None:intergenic |
| TGCACTCTTTGGCATAAAGC+TGG | 0.478098 | 1.1:-75225603 | None:intergenic |
| CTGTGTTTGATATATCTAAA+GGG | 0.478295 | 1.1:+75225719 | MS.gene80093:CDS |
| TCAATGGAATCAAAAGTTCA+TGG | 0.481172 | 1.1:-75225771 | None:intergenic |
| CACTCAGAAGTATAAAACCT+TGG | 0.482492 | 1.1:+75225474 | MS.gene80093:CDS |
| TAGGGAATTGCACCCATTTG+AGG | 0.482728 | 1.1:+75226316 | MS.gene80093:CDS |
| CAATTGTCGAGCTCCGTCTC+TGG | 0.485531 | 1.1:-75226706 | None:intergenic |
| CCTGAAATCACAAAGCTGCT+TGG | 0.485842 | 1.1:+75226062 | MS.gene80093:CDS |
| TGATATATCTAAAGGGCAAA+GGG | 0.485851 | 1.1:+75225726 | MS.gene80093:CDS |
| CTCTGAGTAAAGCTCTTGCC+AGG | 0.488373 | 1.1:+75226385 | MS.gene80093:CDS |
| TGATGTCATGAGGATATTCT+CGG | 0.490782 | 1.1:+75225954 | MS.gene80093:CDS |
| GGGTGGTGTGGAGGATGCAC+TGG | 0.497583 | 1.1:+75226905 | MS.gene80093:CDS |
| CGATTTCCTTTAATTGTGAA+AGG | 0.500867 | 1.1:-75226662 | None:intergenic |
| GCAGAACCTCCATCACCATC+TGG | 0.502480 | 1.1:-75225577 | None:intergenic |
| CATGTTAGGTGTAGAGGGTG+GGG | 0.504439 | 1.1:+75226359 | MS.gene80093:CDS |
| GAGAATGAACTCAAAGATGA+AGG | 0.512971 | 1.1:+75226609 | MS.gene80093:CDS |
| TTGATTCCATTGAAGGAGCC+GGG | 0.514701 | 1.1:+75225781 | MS.gene80093:CDS |
| TTTGAACGTCTGGACATTGA+CGG | 0.515393 | 1.1:+75226756 | MS.gene80093:CDS |
| AAATTGATTTCGTAGTAAGA+TGG | 0.516620 | 1.1:-75225450 | None:intergenic |
| GAAATCACAAAGCTGCTTGG+AGG | 0.519662 | 1.1:+75226065 | MS.gene80093:CDS |
| TTTGATTCCATTGAAGGAGC+CGG | 0.520953 | 1.1:+75225780 | MS.gene80093:CDS |
| CACCGCAAACCAATATTATG+AGG | 0.522671 | 1.1:+75225549 | MS.gene80093:CDS |
| CTTCCAAGTTCAGGAAGCTC+AGG | 0.525920 | 1.1:-75226431 | None:intergenic |
| ATTCTCAGAGAGGTTCAACT+TGG | 0.528765 | 1.1:-75226592 | None:intergenic |
| CTTCTTTCAACTGGTCCTTG+AGG | 0.528830 | 1.1:-75225885 | None:intergenic |
| GGCTCTCACTGTGTTGCAGA+AGG | 0.536655 | 1.1:+75226728 | MS.gene80093:CDS |
| TGCTAAAAGGATTGAGGACA+AGG | 0.539008 | 1.1:+75225519 | MS.gene80093:CDS |
| TCCACAAGGATAGGCGATGA+AGG | 0.540262 | 1.1:+75226270 | MS.gene80093:CDS |
| ATCTTATGAAGAGGGTGGTG+TGG | 0.541655 | 1.1:+75226893 | MS.gene80093:CDS |
| GCTAGGCAGTTTGCTATAGC+AGG | 0.542860 | 1.1:-75226552 | None:intergenic |
| GGCCATAATTTGATTGAGAA+CGG | 0.546531 | 1.1:-75225382 | None:intergenic |
| TTCCAGCAATAAAATCTGAC+AGG | 0.547277 | 1.1:-75225912 | None:intergenic |
| TTGATATATCTAAAGGGCAA+AGG | 0.548049 | 1.1:+75225725 | MS.gene80093:CDS |
| GAGGAAGAGCCAGATGGTGA+TGG | 0.549187 | 1.1:+75225568 | MS.gene80093:CDS |
| TTAGATGAAAATGACCCTGA+TGG | 0.550836 | 1.1:+75226852 | MS.gene80093:CDS |
| GCCTTCATCGCCTATCCTTG+TGG | 0.550966 | 1.1:-75226271 | None:intergenic |
| TGATTTCGTAGTAAGATGGT+TGG | 0.553384 | 1.1:-75225446 | None:intergenic |
| AGAAAATGCTAAAAGGATTG+AGG | 0.553446 | 1.1:+75225513 | MS.gene80093:CDS |
| GGCTTTCATTGAAGCAGAGG+AGG | 0.556518 | 1.1:+75225747 | MS.gene80093:CDS |
| ACTTTGAGCTTCTCTGTGGA+AGG | 0.557077 | 1.1:-75226150 | None:intergenic |
| GGAAACGTCATTTCTGATGA+AGG | 0.558076 | 1.1:+75226777 | MS.gene80093:CDS |
| ACATGTTAGGTGTAGAGGGT+GGG | 0.562106 | 1.1:+75226358 | MS.gene80093:CDS |
| AGGTGCCATCCAGATAAGTA+AGG | 0.569786 | 1.1:+75226629 | MS.gene80093:CDS |
| AGACAACATGTTAGGTGTAG+AGG | 0.571641 | 1.1:+75226353 | MS.gene80093:CDS |
| CAATGGAATCAAAAGTTCAT+GGG | 0.571652 | 1.1:-75225770 | None:intergenic |
| ATTCCCTAAAGCATCAGATA+AGG | 0.572628 | 1.1:-75226301 | None:intergenic |
| CTACAATTCAATCAACTACA+AGG | 0.572637 | 1.1:-75226944 | None:intergenic |
| GACGATTCTCGTATCCCTCA+AGG | 0.582435 | 1.1:+75225870 | MS.gene80093:CDS |
| CTTTGAGTTCATTCTCAGAG+AGG | 0.583247 | 1.1:-75226602 | None:intergenic |
| AAGGGCTTTCATTGAAGCAG+AGG | 0.585758 | 1.1:+75225744 | MS.gene80093:CDS |
| CTCATAATATTGGTTTGCGG+TGG | 0.591749 | 1.1:-75225548 | None:intergenic |
| AACATGTTAGGTGTAGAGGG+TGG | 0.597375 | 1.1:+75226357 | MS.gene80093:CDS |
| TAAAGCCTTACTTATCTGGA+TGG | 0.601456 | 1.1:-75226634 | None:intergenic |
| ATCTCGAGAACTTCAAGGCG+AGG | 0.604342 | 1.1:-75226498 | None:intergenic |
| TGCAACAGAATAACCAGAGA+CGG | 0.607097 | 1.1:+75226693 | MS.gene80093:CDS |
| GAACACTAGACAGACGCTTG+TGG | 0.616790 | 1.1:+75225414 | MS.gene80093:CDS |
| GAAGAGCCAGATGGTGATGG+AGG | 0.618057 | 1.1:+75225571 | MS.gene80093:CDS |
| GACAACATGTTAGGTGTAGA+GGG | 0.619666 | 1.1:+75226354 | MS.gene80093:CDS |
| CAGAAGCACTTGATGTCATG+AGG | 0.625520 | 1.1:+75225944 | MS.gene80093:CDS |
| TTCATCGCCTATCCTTGTGG+AGG | 0.637124 | 1.1:-75226268 | None:intergenic |
| TTATGAAGAGGGTGGTGTGG+AGG | 0.638677 | 1.1:+75226896 | MS.gene80093:CDS |
| CTTGAAGTTCTCGAGATGAG+TGG | 0.640302 | 1.1:+75226504 | MS.gene80093:CDS |
| GTCTGTCTAGTGTTCTGACT+AGG | 0.640859 | 1.1:-75225406 | None:intergenic |
| GAGAACTTTGAGCTTCTCTG+TGG | 0.641453 | 1.1:-75226154 | None:intergenic |
| AAAATGGGTCCTAGTAGGAA+CGG | 0.642065 | 1.1:+75225649 | MS.gene80093:CDS |
| TGTCTAGTGTTCTGACTAGG+AGG | 0.651566 | 1.1:-75225403 | None:intergenic |
| GATGAAGAATCTTATGAAGA+GGG | 0.654330 | 1.1:+75226885 | MS.gene80093:CDS |
| ATATCAAACACAGATTCAAG+AGG | 0.662676 | 1.1:-75225709 | None:intergenic |
| GGAACAACGAAAATCCTCCA+AGG | 0.665861 | 1.1:-75226247 | None:intergenic |
| TATTATGAGGAAGAGCCAGA+TGG | 0.666367 | 1.1:+75225562 | MS.gene80093:CDS |
| TATCAAACACAGATTCAAGA+GGG | 0.674818 | 1.1:-75225708 | None:intergenic |
| AGGAGCACGTGCTATAGCTG+AGG | 0.676404 | 1.1:+75226206 | MS.gene80093:CDS |
| ACAAGGATAGGCGATGAAGG+CGG | 0.690357 | 1.1:+75226273 | MS.gene80093:CDS |
| TGATGAAGAATCTTATGAAG+AGG | 0.698966 | 1.1:+75226884 | MS.gene80093:CDS |
| GAAGAATCTTATGAAGAGGG+TGG | 0.700350 | 1.1:+75226888 | MS.gene80093:CDS |
| TTCCTGAACTTGGAAGACGA+AGG | 0.704063 | 1.1:+75226438 | MS.gene80093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAGTCATATTATTATGAAAA+TGG | - | chr1.1:75226179-75226198 | None:intergenic | 20.0% |
| !!! | CATTTTCATAATAATATGAC+TGG | + | chr1.1:75226177-75226196 | MS.gene80093:CDS | 20.0% |
| ! | CTGTGTTTGATATATCTAAA+GGG | + | chr1.1:75225719-75225738 | MS.gene80093:CDS | 25.0% |
| ! | GGTTATATTTGAAAAATCTC+CGG | + | chr1.1:75226815-75226834 | MS.gene80093:CDS | 25.0% |
| ! | TCTGTGTTTGATATATCTAA+AGG | + | chr1.1:75225718-75225737 | MS.gene80093:CDS | 25.0% |
| !! | AAATTGATTTCGTAGTAAGA+TGG | - | chr1.1:75225453-75225472 | None:intergenic | 25.0% |
| !! | TCTTATGAATGATGGAATTT+CGG | + | chr1.1:75226095-75226114 | MS.gene80093:CDS | 25.0% |
| !!! | ATTTTAGTGAAAGAATTACC+CGG | - | chr1.1:75225802-75225821 | None:intergenic | 25.0% |
| !!! | TGAAGGTATTAAAGAGTTAA+TGG | + | chr1.1:75226794-75226813 | MS.gene80093:CDS | 25.0% |
| AATAATATGACTGGAGATGA+AGG | + | chr1.1:75226186-75226205 | MS.gene80093:CDS | 30.0% | |
| AGAAAATGCTAAAAGGATTG+AGG | + | chr1.1:75225513-75225532 | MS.gene80093:CDS | 30.0% | |
| ATATCAAACACAGATTCAAG+AGG | - | chr1.1:75225712-75225731 | None:intergenic | 30.0% | |
| CAATGGAATCAAAAGTTCAT+GGG | - | chr1.1:75225773-75225792 | None:intergenic | 30.0% | |
| CGATTTCCTTTAATTGTGAA+AGG | - | chr1.1:75226665-75226684 | None:intergenic | 30.0% | |
| CTCCTAGAACTTCTTAAAAT+GGG | + | chr1.1:75225634-75225653 | MS.gene80093:CDS | 30.0% | |
| GATGAAGAATCTTATGAAGA+GGG | + | chr1.1:75226885-75226904 | MS.gene80093:CDS | 30.0% | |
| TATCAAACACAGATTCAAGA+GGG | - | chr1.1:75225711-75225730 | None:intergenic | 30.0% | |
| TCAATGGAATCAAAAGTTCA+TGG | - | chr1.1:75225774-75225793 | None:intergenic | 30.0% | |
| TGATATATCTAAAGGGCAAA+GGG | + | chr1.1:75225726-75225745 | MS.gene80093:CDS | 30.0% | |
| TGATGAAGAATCTTATGAAG+AGG | + | chr1.1:75226884-75226903 | MS.gene80093:CDS | 30.0% | |
| TTGATATATCTAAAGGGCAA+AGG | + | chr1.1:75225725-75225744 | MS.gene80093:CDS | 30.0% | |
| ! | AACTACAAGGTTCTTCATTT+TGG | - | chr1.1:75226934-75226953 | None:intergenic | 30.0% |
| ! | GAGCTTTATCTTATGAATGA+TGG | + | chr1.1:75226087-75226106 | MS.gene80093:CDS | 30.0% |
| !! | TGAACTTTTGATTCCATTGA+AGG | + | chr1.1:75225774-75225793 | MS.gene80093:CDS | 30.0% |
| !! | TTCCTCATAATATTGGTTTG+CGG | - | chr1.1:75225554-75225573 | None:intergenic | 30.0% |
| AACCTTTCTGACAATGCTTT+AGG | + | chr1.1:75226009-75226028 | MS.gene80093:CDS | 35.0% | |
| AGAAGGCCTTTCACAATTAA+AGG | + | chr1.1:75226656-75226675 | MS.gene80093:CDS | 35.0% | |
| AGGCTGAAGAAAATGCTAAA+AGG | + | chr1.1:75225506-75225525 | MS.gene80093:CDS | 35.0% | |
| CAAATCAAGCTTCCTCAAAT+GGG | - | chr1.1:75226331-75226350 | None:intergenic | 35.0% | |
| CCTCCTAGAACTTCTTAAAA+TGG | + | chr1.1:75225633-75225652 | MS.gene80093:CDS | 35.0% | |
| GAGAATGAACTCAAAGATGA+AGG | + | chr1.1:75226609-75226628 | MS.gene80093:CDS | 35.0% | |
| GGCCATAATTTGATTGAGAA+CGG | - | chr1.1:75225385-75225404 | None:intergenic | 35.0% | |
| TAAAGCCTTACTTATCTGGA+TGG | - | chr1.1:75226637-75226656 | None:intergenic | 35.0% | |
| TGATGTCATGAGGATATTCT+CGG | + | chr1.1:75225954-75225973 | MS.gene80093:CDS | 35.0% | |
| TGATTTCGTAGTAAGATGGT+TGG | - | chr1.1:75225449-75225468 | None:intergenic | 35.0% | |
| TGCTATAGCTAATGCTCTTA+AGG | + | chr1.1:75226467-75226486 | MS.gene80093:CDS | 35.0% | |
| TTAGATGAAAATGACCCTGA+TGG | + | chr1.1:75226852-75226871 | MS.gene80093:CDS | 35.0% | |
| TTCCAGCAATAAAATCTGAC+AGG | - | chr1.1:75225915-75225934 | None:intergenic | 35.0% | |
| TTCTTAAAATGGGTCCTAGT+AGG | + | chr1.1:75225644-75225663 | MS.gene80093:CDS | 35.0% | |
| TTGCCTTATCTGATGCTTTA+GGG | + | chr1.1:75226298-75226317 | MS.gene80093:CDS | 35.0% | |
| ! | ATTCCCTAAAGCATCAGATA+AGG | - | chr1.1:75226304-75226323 | None:intergenic | 35.0% |
| ! | CACTCAGAAGTATAAAACCT+TGG | + | chr1.1:75225474-75225493 | MS.gene80093:CDS | 35.0% |
| !! | CAGATAAGTAAGGCTTTAGA+AGG | + | chr1.1:75226639-75226658 | MS.gene80093:CDS | 35.0% |
| !! | CTTCTAAAGCCTTACTTATC+TGG | - | chr1.1:75226641-75226660 | None:intergenic | 35.0% |
| !! | GACCCATTTTAAGAAGTTCT+AGG | - | chr1.1:75225639-75225658 | None:intergenic | 35.0% |
| !! | TCAGGGTCATTTTCATCTAA+TGG | - | chr1.1:75226852-75226871 | None:intergenic | 35.0% |
| !!! | AGCAACAGAAGTTTTGGATT+AGG | + | chr1.1:75225829-75225848 | MS.gene80093:CDS | 35.0% |
| !!! | CCATTTTAAGAAGTTCTAGG+AGG | - | chr1.1:75225636-75225655 | None:intergenic | 35.0% |
| AAAATGGGTCCTAGTAGGAA+CGG | + | chr1.1:75225649-75225668 | MS.gene80093:CDS | 40.0% | |
| ACAGGTCTACTTCTTTCAAC+TGG | - | chr1.1:75225897-75225916 | None:intergenic | 40.0% | |
| AGACAACATGTTAGGTGTAG+AGG | + | chr1.1:75226353-75226372 | MS.gene80093:CDS | 40.0% | |
| ATTCTCAGAGAGGTTCAACT+TGG | - | chr1.1:75226595-75226614 | None:intergenic | 40.0% | |
| CACCGCAAACCAATATTATG+AGG | + | chr1.1:75225549-75225568 | MS.gene80093:CDS | 40.0% | |
| GAAGAATCTTATGAAGAGGG+TGG | + | chr1.1:75226888-75226907 | MS.gene80093:CDS | 40.0% | |
| GACAACATGTTAGGTGTAGA+GGG | + | chr1.1:75226354-75226373 | MS.gene80093:CDS | 40.0% | |
| GATTTGCGAGACAACATGTT+AGG | + | chr1.1:75226345-75226364 | MS.gene80093:CDS | 40.0% | |
| GCAAATCAAGCTTCCTCAAA+TGG | - | chr1.1:75226332-75226351 | None:intergenic | 40.0% | |
| GGAAACGTCATTTCTGATGA+AGG | + | chr1.1:75226777-75226796 | MS.gene80093:CDS | 40.0% | |
| GGCCGTTCTCAATCAAATTA+TGG | + | chr1.1:75225380-75225399 | MS.gene80093:CDS | 40.0% | |
| GTTGCCTTATCTGATGCTTT+AGG | + | chr1.1:75226297-75226316 | MS.gene80093:CDS | 40.0% | |
| TAAAACCTTGGACCTGAAAC+AGG | + | chr1.1:75225486-75225505 | MS.gene80093:CDS | 40.0% | |
| TATTATGAGGAAGAGCCAGA+TGG | + | chr1.1:75225562-75225581 | MS.gene80093:CDS | 40.0% | |
| TGCAACAGAATAACCAGAGA+CGG | + | chr1.1:75226693-75226712 | MS.gene80093:CDS | 40.0% | |
| TGCTAAAAGGATTGAGGACA+AGG | + | chr1.1:75225519-75225538 | MS.gene80093:CDS | 40.0% | |
| TTCTTTCAACTGGTCCTTGA+GGG | - | chr1.1:75225887-75225906 | None:intergenic | 40.0% | |
| TTTGAACGTCTGGACATTGA+CGG | + | chr1.1:75226756-75226775 | MS.gene80093:CDS | 40.0% | |
| TTTGATTCCATTGAAGGAGC+CGG | + | chr1.1:75225780-75225799 | MS.gene80093:CDS | 40.0% | |
| ! | ATTTTCGTTGTTCCTCCACA+AGG | + | chr1.1:75226256-75226275 | MS.gene80093:CDS | 40.0% |
| ! | CATCACAGTCTTTTCCATCA+GGG | - | chr1.1:75226869-75226888 | None:intergenic | 40.0% |
| ! | CATTTTCTTCAGCCTGTTTC+AGG | - | chr1.1:75225501-75225520 | None:intergenic | 40.0% |
| ! | CTGGCTCTTCCTCATAATAT+TGG | - | chr1.1:75225561-75225580 | None:intergenic | 40.0% |
| ! | CTTTGAGTTCATTCTCAGAG+AGG | - | chr1.1:75226605-75226624 | None:intergenic | 40.0% |
| ! | GACAATGCTTTAGGTGAGAA+AGG | + | chr1.1:75226018-75226037 | MS.gene80093:CDS | 40.0% |
| ! | GACCTGTCAGATTTTATTGC+TGG | + | chr1.1:75225910-75225929 | MS.gene80093:CDS | 40.0% |
| ! | TCATCACAGTCTTTTCCATC+AGG | - | chr1.1:75226870-75226889 | None:intergenic | 40.0% |
| ! | TGCTTCAGCAACAGAAGTTT+TGG | + | chr1.1:75225823-75225842 | MS.gene80093:CDS | 40.0% |
| !! | CACCTAAAGCATTGTCAGAA+AGG | - | chr1.1:75226014-75226033 | None:intergenic | 40.0% |
| !! | CTCATAATATTGGTTTGCGG+TGG | - | chr1.1:75225551-75225570 | None:intergenic | 40.0% |
| !! | GAAGGTTGATTTTGAACGTC+TGG | + | chr1.1:75226746-75226765 | MS.gene80093:CDS | 40.0% |
| !! | GAGAAAGGTGTTAGAGCATT+TGG | + | chr1.1:75226033-75226052 | MS.gene80093:CDS | 40.0% |
| AACATGTTAGGTGTAGAGGG+TGG | + | chr1.1:75226357-75226376 | MS.gene80093:CDS | 45.0% | |
| AAGGGCTTTCATTGAAGCAG+AGG | + | chr1.1:75225744-75225763 | MS.gene80093:CDS | 45.0% | |
| ACATCAAGTGCTTCTGCTTC+TGG | - | chr1.1:75225940-75225959 | None:intergenic | 45.0% | |
| ACATGTTAGGTGTAGAGGGT+GGG | + | chr1.1:75226358-75226377 | MS.gene80093:CDS | 45.0% | |
| ACTTTGAGCTTCTCTGTGGA+AGG | - | chr1.1:75226153-75226172 | None:intergenic | 45.0% | |
| ATACCTGAGCTTCCTGAACT+TGG | + | chr1.1:75226428-75226447 | MS.gene80093:CDS | 45.0% | |
| ATCTTATGAAGAGGGTGGTG+TGG | + | chr1.1:75226893-75226912 | MS.gene80093:CDS | 45.0% | |
| CAAGAAACTGCTTAGCTGCT+AGG | - | chr1.1:75226572-75226591 | None:intergenic | 45.0% | |
| CACTCATCTCGAGAACTTCA+AGG | - | chr1.1:75226506-75226525 | None:intergenic | 45.0% | |
| CCTGAAATCACAAAGCTGCT+TGG | + | chr1.1:75226062-75226081 | MS.gene80093:CDS | 45.0% | |
| CTTCTTTCAACTGGTCCTTG+AGG | - | chr1.1:75225888-75225907 | None:intergenic | 45.0% | |
| CTTGAAGTTCTCGAGATGAG+TGG | + | chr1.1:75226504-75226523 | MS.gene80093:CDS | 45.0% | |
| GAAAAATCTCCGGACAAGCT+TGG | + | chr1.1:75226825-75226844 | MS.gene80093:CDS | 45.0% | |
| GAAATCACAAAGCTGCTTGG+AGG | + | chr1.1:75226065-75226084 | MS.gene80093:CDS | 45.0% | |
| GAGAACTTTGAGCTTCTCTG+TGG | - | chr1.1:75226157-75226176 | None:intergenic | 45.0% | |
| GGAACAACGAAAATCCTCCA+AGG | - | chr1.1:75226250-75226269 | None:intergenic | 45.0% | |
| GTCTGTCTAGTGTTCTGACT+AGG | - | chr1.1:75225409-75225428 | None:intergenic | 45.0% | |
| TAGGGAATTGCACCCATTTG+AGG | + | chr1.1:75226316-75226335 | MS.gene80093:CDS | 45.0% | |
| TCTTTGACACCGTTCCTACT+AGG | - | chr1.1:75225661-75225680 | None:intergenic | 45.0% | |
| TGCACTCTTTGGCATAAAGC+TGG | - | chr1.1:75225606-75225625 | None:intergenic | 45.0% | |
| TGGAGCTGAATTTGCAGAAC+AGG | + | chr1.1:75225359-75225378 | MS.gene80093:CDS | 45.0% | |
| TGTCTAGTGTTCTGACTAGG+AGG | - | chr1.1:75225406-75225425 | None:intergenic | 45.0% | |
| TTCCTGAACTTGGAAGACGA+AGG | + | chr1.1:75226438-75226457 | MS.gene80093:CDS | 45.0% | |
| TTGATTCCATTGAAGGAGCC+GGG | + | chr1.1:75225781-75225800 | MS.gene80093:CDS | 45.0% | |
| ! | AGGTGCCATCCAGATAAGTA+AGG | + | chr1.1:75226629-75226648 | MS.gene80093:CDS | 45.0% |
| ! | ATATTCTCGGCTGCTCTAGA+AGG | + | chr1.1:75225967-75225986 | MS.gene80093:CDS | 45.0% |
| ! | CCAAGCAGCTTTGTGATTTC+AGG | - | chr1.1:75226065-75226084 | None:intergenic | 45.0% |
| ! | TCTAATGGACCAAGCTTGTC+CGG | - | chr1.1:75226837-75226856 | None:intergenic | 45.0% |
| ! | TGTGAAGCGTTCTTCTTCCT+TGG | + | chr1.1:75226230-75226249 | MS.gene80093:CDS | 45.0% |
| !! | CAGAAGCACTTGATGTCATG+AGG | + | chr1.1:75225944-75225963 | MS.gene80093:CDS | 45.0% |
| ACAAGGATAGGCGATGAAGG+CGG | + | chr1.1:75226273-75226292 | MS.gene80093:CDS | 50.0% | |
| ATCTCGAGAACTTCAAGGCG+AGG | - | chr1.1:75226501-75226520 | None:intergenic | 50.0% | |
| CATGTTAGGTGTAGAGGGTG+GGG | + | chr1.1:75226359-75226378 | MS.gene80093:CDS | 50.0% | |
| CGTTGTTCCTCCACAAGGAT+AGG | + | chr1.1:75226261-75226280 | MS.gene80093:CDS | 50.0% | |
| CTCCTTCGTCTTCCAAGTTC+AGG | - | chr1.1:75226443-75226462 | None:intergenic | 50.0% | |
| CTCTCTTAACTCTGCATGCC+TGG | - | chr1.1:75226406-75226425 | None:intergenic | 50.0% | |
| CTCTGAGTAAAGCTCTTGCC+AGG | + | chr1.1:75226385-75226404 | MS.gene80093:CDS | 50.0% | |
| CTTCCAAGTTCAGGAAGCTC+AGG | - | chr1.1:75226434-75226453 | None:intergenic | 50.0% | |
| GAACACTAGACAGACGCTTG+TGG | + | chr1.1:75225414-75225433 | MS.gene80093:CDS | 50.0% | |
| GAATTACCCGGCTCCTTCAA+TGG | - | chr1.1:75225790-75225809 | None:intergenic | 50.0% | |
| GACGATTCTCGTATCCCTCA+AGG | + | chr1.1:75225870-75225889 | MS.gene80093:CDS | 50.0% | |
| GAGGAGCTTACTGCACTCTT+TGG | - | chr1.1:75225617-75225636 | None:intergenic | 50.0% | |
| GGCTTTCATTGAAGCAGAGG+AGG | + | chr1.1:75225747-75225766 | MS.gene80093:CDS | 50.0% | |
| TCCACAAGGATAGGCGATGA+AGG | + | chr1.1:75226270-75226289 | MS.gene80093:CDS | 50.0% | |
| TTATGAAGAGGGTGGTGTGG+AGG | + | chr1.1:75226896-75226915 | MS.gene80093:CDS | 50.0% | |
| TTCATCGCCTATCCTTGTGG+AGG | - | chr1.1:75226271-75226290 | None:intergenic | 50.0% | |
| ! | GAAGCGTTCTTCTTCCTTGG+AGG | + | chr1.1:75226233-75226252 | MS.gene80093:CDS | 50.0% |
| ! | TTCAGCCTGTTTCAGGTCCA+AGG | - | chr1.1:75225494-75225513 | None:intergenic | 50.0% |
| !! | GCTAGGCAGTTTGCTATAGC+AGG | - | chr1.1:75226555-75226574 | None:intergenic | 50.0% |
| CAATTGTCGAGCTCCGTCTC+TGG | - | chr1.1:75226709-75226728 | None:intergenic | 55.0% | |
| CAGAGACGGAGCTCGACAAT+TGG | + | chr1.1:75226707-75226726 | MS.gene80093:CDS | 55.0% | |
| GAGGAAGAGCCAGATGGTGA+TGG | + | chr1.1:75225568-75225587 | MS.gene80093:CDS | 55.0% | |
| GCAGAACCTCCATCACCATC+TGG | - | chr1.1:75225580-75225599 | None:intergenic | 55.0% | |
| GCCTTCATCGCCTATCCTTG+TGG | - | chr1.1:75226274-75226293 | None:intergenic | 55.0% | |
| GGCTCTCACTGTGTTGCAGA+AGG | + | chr1.1:75226728-75226747 | MS.gene80093:CDS | 55.0% | |
| ! | AGGAGCACGTGCTATAGCTG+AGG | + | chr1.1:75226206-75226225 | MS.gene80093:CDS | 55.0% |
| !! | GAAGAGCCAGATGGTGATGG+AGG | + | chr1.1:75225571-75225590 | MS.gene80093:CDS | 55.0% |
| GGGTGGTGTGGAGGATGCAC+TGG | + | chr1.1:75226905-75226924 | MS.gene80093:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 75225358 | 75226959 | 75225358 | ID=MS.gene80093 |
| chr1.1 | mRNA | 75225358 | 75226959 | 75225358 | ID=MS.gene80093.t1;Parent=MS.gene80093 |
| chr1.1 | exon | 75225358 | 75226959 | 75225358 | ID=MS.gene80093.t1.exon1;Parent=MS.gene80093.t1 |
| chr1.1 | CDS | 75225358 | 75226959 | 75225358 | ID=cds.MS.gene80093.t1;Parent=MS.gene80093.t1 |
| Gene Sequence |
| Protein sequence |
