AlfalfaGEDB | MS.gene81077

M. sativa cultivar XinJiangDaYe / MS.gene81077

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81077.t1	KEH18547.1	96.7	240	8	0	1	240	1	240	1.70E-122	448.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81077.t1	A0A072TMA7	96.7	240	8	0	1	240	1	240	1.2e-122	448.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049501	MS.gene81077	0.820311	7.33E-53	-1.69E-46
MS.gene050724	MS.gene81077	0.813566	2.40E-51	-1.69E-46
MS.gene052012	MS.gene81077	0.810606	1.06E-50	-1.69E-46
MS.gene053008	MS.gene81077	0.803798	2.94E-49	-1.69E-46
MS.gene055818	MS.gene81077	0.811937	5.45E-51	-1.69E-46
MS.gene056506	MS.gene81077	0.815432	9.27E-52	-1.69E-46
MS.gene060572	MS.gene81077	0.808203	3.48E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene08498	MS.gene81077	PPI
MS.gene59614	MS.gene81077	PPI
MS.gene79714	MS.gene81077	PPI
MS.gene81077	MS.gene92136	PPI
MS.gene81078	MS.gene81077	PPI
MS.gene92136	MS.gene81077	PPI
MS.gene98177	MS.gene81077	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81077.t1	MTR_8g023960	96.667	240	8	0	1	240	57	296	1.02e-169	469
MS.gene81077.t1	MTR_8g023960	96.667	240	8	0	1	240	1	240	2.53e-169	466

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81077.t1	AT4G05400	55.731	253	96	5	1	240	1	250	3.06e-85	254
MS.gene81077.t1	AT4G05400	55.731	253	96	5	1	240	1	250	3.06e-85	254
MS.gene81077.t1	AT4G05400	55.731	253	96	5	1	240	1	250	3.06e-85	254
MS.gene81077.t1	AT4G21140	54.286	245	105	5	1	240	1	243	6.38e-73	222

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Find 73 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTGATATAATCCAACCC+AGG	0.616818	8.4:-71057973	None:intergenic
AATTGGCCAAGGAGTATAGT+AGG	0.424942	8.4:+71058055	MS.gene81077:CDS
ACCGGAAACGGCGTAAAATC+CGG	0.463153	8.4:-71058189	None:intergenic
ACCGGGTCCGAACCCACACC+TGG	0.460493	8.4:+71057727	MS.gene81077:CDS
ACGCTTACGCCGCCTATTGA+TGG	0.425057	8.4:+71058228	MS.gene81077:CDS
ACGTGATATAATCCAACCCA+GGG	0.616998	8.4:-71057972	None:intergenic
AGATGGGATGAAATTGGCCA+AGG	0.616560	8.4:+71058044	MS.gene81077:CDS
AGATTAAGGAGGCTGCTGAT+AGG	0.463125	8.4:+71058262	MS.gene81077:CDS
AGCCGCACCGCCAAAGGAAA+AGG	0.428181	8.4:+71057658	MS.gene81077:CDS
AGCTTCCCGTGCGCGTTGTT+TGG	0.253091	8.4:-71057839	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTGAACGAGAAAAATTA+GGG	+	chr8.4:71057857-71057876	MS.gene81077:CDS	30.0%
AGAAGAAAAACGCCAAATTT+AGG	+	chr8.4:71057920-71057939	MS.gene81077:CDS	30.0%
ATAAACATATTCACCGGAAA+CGG	-	chr8.4:71058204-71058223	None:intergenic	30.0%
GAAGAAAAACGCCAAATTTA+GGG	+	chr8.4:71057921-71057940	MS.gene81077:CDS	30.0%
GTATATTGAGAAGATTAAGG+AGG	+	chr8.4:71058251-71058270	MS.gene81077:CDS	30.0%
TCTGAAAAACCAACGATAAT+GGG	+	chr8.4:71057946-71057965	MS.gene81077:CDS	30.0%
TGGGTATATTGAGAAGATTA+AGG	+	chr8.4:71058248-71058267	MS.gene81077:CDS	30.0%
TTCTCAATATACCCATCAAT+AGG	-	chr8.4:71058243-71058262	None:intergenic	30.0%
ATGAATTGACGAAGGAAGAT+GGG	+	chr8.4:71058028-71058047	MS.gene81077:CDS	35.0%
GAAGCTGAACGAGAAAAATT+AGG	+	chr8.4:71057856-71057875	MS.gene81077:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	71057589	71058311	71057589	ID=MS.gene81077
chr8.4	mRNA	71057589	71058311	71057589	ID=MS.gene81077.t1;Parent=MS.gene81077
chr8.4	exon	71057589	71058311	71057589	ID=MS.gene81077.t1.exon1;Parent=MS.gene81077.t1
chr8.4	CDS	71057589	71058311	71057589	ID=cds.MS.gene81077.t1;Parent=MS.gene81077.t1

Gene Sequence

>MS.gene81077

ATGCTCCGTCTCACAAAGCTAAAACCACCGTCATCTTCACCGCACCAACTCCTCCAACGCTGCTCCGTCAGCCGCACCGCCAAAGGAAAAGGAAAAGCCGGTCAAATCCTAAAACGTTCCAAAATCACAGTAAAAAAAACCGGGTCCGAACCCACACCTGGAGCCCCAACCGGATCCCGCGAGAAACAAGAACGCGAACGTCTCTACGATCAATGCCTCAATGCACCAACACCGCTTCGTTTTCTCAAACCCAAACAACGCGCACGGGAAGCTGAACGAGAAAAATTAGGGTTAATTAGCAAAGATCGTCAAATTGAACTTGATATGATGAAGAAGAAAAACGCCAAATTTAGGGTTTCTGAAAAACCAACGATAATGGGAACCCCTGGGTTGGATTATATCACGTTAGGGTTAGTGGATGCTGAGAAATTGCCTAAGTATGAATTGACGAAGGAAGATGGGATGAAATTGGCCAAGGAGTATAGTAGGGTTTTGATGAGGAAGCATAGGGCGAGACAAGCGGCGGAGACGAATCTTTTGAGGATGAAAAAGGAGGCTATTGAAGCTTTGCCTGGGGGTTTGAAGGAAGCTGCTTTGGTGCCGGATTTTACGCCGTTTCCGGTGAATATGTTTATGGCAACGCTTACGCCGCCTATTGATGGGTATATTGAGAAGATTAAGGAGGCTGCTGATAGGATCAGTGGGAAGGAGAAGATTAGGTAG

Protein sequence

>MS.gene81077.t1

MLRLTKLKPPSSSPHQLLQRCSVSRTAKGKGKAGQILKRSKITVKKTGSEPTPGAPTGSREKQERERLYDQCLNAPTPLRFLKPKQRAREAEREKLGLISKDRQIELDMMKKKNAKFRVSEKPTIMGTPGLDYITLGLVDAEKLPKYELTKEDGMKLAKEYSRVLMRKHRARQAAETNLLRMKKEAIEALPGGLKEAALVPDFTPFPVNMFMATLTPPIDGYIEKIKEAADRISGKEKIR