AlfalfaGEDB | MS.gene81338

M. sativa cultivar XinJiangDaYe / MS.gene81338

KEGG: K05389
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0022803 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071805 GO:0098655 GO:0098660 GO:0098662 GO:0110165
PFAM: PF07885.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81338.t1	XP_003617804.1	94.3	349	20	0	1	349	1	349	1.80E-162	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81338.t1	Q8LBL1	61.3	336	115	4	1	324	1	333	3.9e-105	382.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81338.t1	G7K4P7	94.3	349	20	0	1	349	1	349	1.3e-162	582.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049499	MS.gene81338	0.809921	1.49E-50	-1.69E-46
MS.gene049711	MS.gene81338	0.811678	6.21E-51	-1.69E-46
MS.gene049807	MS.gene81338	0.810172	1.32E-50	-1.69E-46
MS.gene050559	MS.gene81338	0.803505	3.38E-49	-1.69E-46
MS.gene050562	MS.gene81338	0.806913	6.53E-50	-1.69E-46
MS.gene052533	MS.gene81338	0.833028	6.75E-56	-1.69E-46
MS.gene054178	MS.gene81338	0.809915	1.49E-50	-1.69E-46
MS.gene055229	MS.gene81338	0.806519	7.91E-50	-1.69E-46
MS.gene056677	MS.gene81338	0.834069	3.71E-56	-1.69E-46
MS.gene056699	MS.gene81338	0.800404	1.46E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81338.t1	MTR_5g095650	96.562	349	12	0	1	349	1	349	0.0	691
MS.gene81338.t1	MTR_4g133870	56.447	349	144	3	1	343	1	347	3.77e-131	379
MS.gene81338.t1	MTR_7g110600	33.728	338	213	3	17	348	50	382	2.28e-63	206
MS.gene81338.t1	MTR_4g094582	35.455	330	187	6	31	348	103	418	6.63e-63	206
MS.gene81338.t1	MTR_5g091565	32.011	353	217	7	4	343	37	379	3.66e-59	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81338.t1	AT5G55630	66.337	303	102	0	47	349	56	358	9.53e-152	431
MS.gene81338.t1	AT5G55630	66.337	303	102	0	47	349	56	358	9.53e-152	431
MS.gene81338.t1	AT4G01840	33.908	348	200	6	15	343	67	403	3.68e-61	201
MS.gene81338.t1	AT4G18160	35.000	320	193	5	31	343	118	429	1.32e-56	190
MS.gene81338.t1	AT5G46370	36.331	278	170	1	73	343	152	429	5.33e-53	181
MS.gene81338.t1	AT1G02510	34.328	268	151	5	72	337	40	284	7.26e-48	163
MS.gene81338.t1	AT5G46360	35.714	154	99	0	195	348	106	259	1.04e-27	109
MS.gene81338.t1	AT5G46360	33.775	151	98	1	195	343	106	256	6.90e-22	94.0

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Find 64 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGCTATAATCCTTA+TGG	0.344112	5.2:+80424437	MS.gene81338:CDS
AAAAGTTTCTCTACTCAAGC+TGG	0.474950	5.2:+80424930	MS.gene81338:CDS
AAACACCGAAAACAGACAAA+AGG	0.497203	5.2:+80425028	MS.gene81338:CDS
AAAGGAGCAGGATCTGTGTG+AGG	0.683580	5.2:-80424345	None:intergenic
AAGCAAAGCAGCAGATTACT+TGG	0.421571	5.2:+80424668	MS.gene81338:CDS
AAGGACGATTAAACCAAAGA+AGG	0.555389	5.2:+80424301	MS.gene81338:CDS
AAGGTCACCATATCCAACTG+TGG	0.725731	5.2:-80424568	None:intergenic
ACAAAAGGCACTTGTTAAAT+GGG	0.414401	5.2:+80425043	MS.gene81338:CDS
ACAATGACCACAGTTGGATA+TGG	0.469742	5.2:+80424561	MS.gene81338:CDS
ACAATTACAACTCTTGGTTA+TGG	0.337875	5.2:+80424903	MS.gene81338:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGGCTATAATCCTTA+TGG	+	chr5.2:80424437-80424456	MS.gene81338:CDS	30.0%
ACAATTACAACTCTTGGTTA+TGG	+	chr5.2:80424903-80424922	MS.gene81338:CDS	30.0%
ACCCTTTATTCTAATGAGTT+AGG	+	chr5.2:80425576-80425595	MS.gene81338:intron	30.0%
AGACTAAGGATTTATAAGCA+AGG	-	chr5.2:80425473-80425492	None:intergenic	30.0%
AGATATAACACTTGTGATGA+AGG	+	chr5.2:80425848-80425867	MS.gene81338:CDS	30.0%
CAGTGAAAAGTAAAATGAGA+TGG	+	chr5.2:80425704-80425723	MS.gene81338:intron	30.0%
CATTAGAATAAAGGGTAGTT+AGG	-	chr5.2:80425572-80425591	None:intergenic	30.0%
CTTAGTCAATGTAGAGAAAT+TGG	+	chr5.2:80424848-80424867	MS.gene81338:CDS	30.0%
CTTTAATCTTCTACCTTGTT+AGG	+	chr5.2:80424478-80424497	MS.gene81338:CDS	30.0%
GAAAAGTAAAATGAGATGGT+GGG	+	chr5.2:80425708-80425727	MS.gene81338:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	80424234	80425944	80424234	ID=MS.gene81338
chr5.2	mRNA	80424234	80425944	80424234	ID=MS.gene81338.t1;Parent=MS.gene81338
chr5.2	exon	80424234	80425132	80424234	ID=MS.gene81338.t1.exon1;Parent=MS.gene81338.t1
chr5.2	CDS	80424234	80425132	80424234	ID=cds.MS.gene81338.t1;Parent=MS.gene81338.t1
chr5.2	exon	80425794	80425944	80425794	ID=MS.gene81338.t1.exon2;Parent=MS.gene81338.t1
chr5.2	CDS	80425794	80425944	80425794	ID=cds.MS.gene81338.t1;Parent=MS.gene81338.t1

Gene Sequence

>MS.gene81338

ATGGCCAGCAATGATAAAAATGAGCCCTTACTATTGAGATCACAGGACACTGTGGCTCAAAAGGCTAAAGGACGATTAAACCAAAGAAGGCTCCTCCGTTCTAGAAGTGCTCCTCACACAGATCCTGCTCCTTTGTTGATAAACGACAAAGAATCGATTCCCCTTTCTGAGGCCATATTTGGGCATCTACATCCAAGCTTTAAAAAAGTGGCTATAATCCTTATGGTCTATTTAGGTGTAGGAACTTTAATCTTCTACCTTGTTAGGAACCAAATCAAGGGAATGAAAACAGAGAGATTCCTTGATGCCTTATATTTTACAATTGTGACAATGACCACAGTTGGATATGGTGACCTTGTTCCCAATAGTGACCTTACAAAACTACTCGCTTGCGCTTTTGTTTTCTCCGGAATGGCGTTGATGGGACTAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGTTAATTAAAGCCATGCACATGCGCCAAAAAGTTGGTCCAAGTGAAATTTTAAAGGAGCTTGAGATCAATAAAACAAGATACAAATTTTTTCTTGTCTTTTTTCTTCTTTTGATTCTCGTTATCGCGGGGACAATCTTCTTAGTCAATGTAGAGAAATTGGATGTTATTGATGCCTTTTACTGTGTTTGTTCAACAATTACAACTCTTGGTTATGGAGATAAAAGTTTCTCTACTCAAGCTGGAAGAATATTTGCAGTGTTTTGGATACTAACAGGTACTGTTTGCTTAGCTCAGTTTTTCCTCTACATGGCTGAACTAAACACCGAAAACAGACAAAAGGCACTTGTTAAATGGGTTCTTACAAGGAAAATGACCAATTATGATTTGGAAGCCGCAGATCTTGATGAGGATGGGACTGTTGGGTTAGTTCATCATTCTTTCAAAGTCTTATACTCTTATTTATTGTTAGCAGTTTATTATAACTACTCCCTCATCTAAATTTATTTTTCGTTTAAGTTAAATGCCAAAGGTCTAAACCTAATGAACTTTCATTTCATATTGCTCTAGTTTTTTTCTTCGGGGCTTGTCCTTGACGGAGTTAGGCAGTGTGGCGACCTGTTAATAATCGGTATAGACTGTTAGATCATATTGGACTTTGATACCATGTTACAATATTTAGTTCAAACCCGATTGGAGGAGTGTTTAGAGGAGTGGGGATTCATGATCCAAAAGGTCAAAAGCCTAATGGCCTTCACCTCACCTTGCTTATAAATCCTTAGTCTCACTATTTTATCCATTGTGTGACTTCTATTTTTAATGGTTATACTCCTTTTCATAGTAAAATAGTACTGATATTTTCCTAACTACCCTTTATTCTAATGAGTTAGGTAGAATGACTAGTTAATAGAGAATAAGTTGAGTTACAAATTTATAAGGGTATCATTGAAATAAATGTAATTAACACTCTTTTGATATTTTAATATGACATTGGAACAGTGAAAAGTAAAATGAGATGGTGGGAGTACCAATGGTTTAAATATATGTTTTCATTTATTTGAATATCTTTGGTTTTATTGTTCACAGGGCTGCTGAATTTGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATAACACTTGTGATGAAGGAGTTTGAAGAGCTTGACATTGATCAGTCTGGTACACTGTCTGTTTCTGATATAACACTTGCTCAATCGTCTTGA

Protein sequence

>MS.gene81338.t1

MASNDKNEPLLLRSQDTVAQKAKGRLNQRRLLRSRSAPHTDPAPLLINDKESIPLSEAIFGHLHPSFKKVAIILMVYLGVGTLIFYLVRNQIKGMKTERFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAMHMRQKVGPSEILKELEINKTRYKFFLVFFLLLILVIAGTIFLVNVEKLDVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTVCLAQFFLYMAELNTENRQKALVKWVLTRKMTNYDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDITLVMKEFEELDIDQSGTLSVSDITLAQSS