Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81338.t1 | XP_003617804.1 | 94.3 | 349 | 20 | 0 | 1 | 349 | 1 | 349 | 1.80E-162 | 582 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81338.t1 | Q8LBL1 | 61.3 | 336 | 115 | 4 | 1 | 324 | 1 | 333 | 3.9e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81338.t1 | G7K4P7 | 94.3 | 349 | 20 | 0 | 1 | 349 | 1 | 349 | 1.3e-162 | 582.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049499 | MS.gene81338 | 0.809921 | 1.49E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene81338 | 0.811678 | 6.21E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene81338 | 0.810172 | 1.32E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene81338 | 0.803505 | 3.38E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene81338 | 0.806913 | 6.53E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene81338 | 0.833028 | 6.75E-56 | -1.69E-46 |
| MS.gene054178 | MS.gene81338 | 0.809915 | 1.49E-50 | -1.69E-46 |
| MS.gene055229 | MS.gene81338 | 0.806519 | 7.91E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene81338 | 0.834069 | 3.71E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene81338 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene05686 | MS.gene81338 | 0.839548 | 1.48E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene81338 | 0.853474 | 2.33E-61 | -1.69E-46 |
| MS.gene05952 | MS.gene81338 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene81338 | -0.847493 | 1.12E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene81338 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene81338 | 0.804735 | 1.87E-49 | -1.69E-46 |
| MS.gene061160 | MS.gene81338 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene81338 | 0.826751 | 2.28E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81338.t1 | MTR_5g095650 | 96.562 | 349 | 12 | 0 | 1 | 349 | 1 | 349 | 0.0 | 691 |
| MS.gene81338.t1 | MTR_4g133870 | 56.447 | 349 | 144 | 3 | 1 | 343 | 1 | 347 | 3.77e-131 | 379 |
| MS.gene81338.t1 | MTR_7g110600 | 33.728 | 338 | 213 | 3 | 17 | 348 | 50 | 382 | 2.28e-63 | 206 |
| MS.gene81338.t1 | MTR_4g094582 | 35.455 | 330 | 187 | 6 | 31 | 348 | 103 | 418 | 6.63e-63 | 206 |
| MS.gene81338.t1 | MTR_5g091565 | 32.011 | 353 | 217 | 7 | 4 | 343 | 37 | 379 | 3.66e-59 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81338.t1 | AT5G55630 | 66.337 | 303 | 102 | 0 | 47 | 349 | 56 | 358 | 9.53e-152 | 431 |
| MS.gene81338.t1 | AT5G55630 | 66.337 | 303 | 102 | 0 | 47 | 349 | 56 | 358 | 9.53e-152 | 431 |
| MS.gene81338.t1 | AT4G01840 | 33.908 | 348 | 200 | 6 | 15 | 343 | 67 | 403 | 3.68e-61 | 201 |
| MS.gene81338.t1 | AT4G18160 | 35.000 | 320 | 193 | 5 | 31 | 343 | 118 | 429 | 1.32e-56 | 190 |
| MS.gene81338.t1 | AT5G46370 | 36.331 | 278 | 170 | 1 | 73 | 343 | 152 | 429 | 5.33e-53 | 181 |
| MS.gene81338.t1 | AT1G02510 | 34.328 | 268 | 151 | 5 | 72 | 337 | 40 | 284 | 7.26e-48 | 163 |
| MS.gene81338.t1 | AT5G46360 | 35.714 | 154 | 99 | 0 | 195 | 348 | 106 | 259 | 1.04e-27 | 109 |
| MS.gene81338.t1 | AT5G46360 | 33.775 | 151 | 98 | 1 | 195 | 343 | 106 | 256 | 6.90e-22 | 94.0 |
Find 64 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTTCTGAGGCCATATT+TGG | 0.140068 | 5.2:+80424393 | MS.gene81338:CDS |
| GACAAAAGGCACTTGTTAAA+TGG | 0.156121 | 5.2:+80425042 | MS.gene81338:CDS |
| ATAATCCTTATGGTCTATTT+AGG | 0.214338 | 5.2:+80424447 | MS.gene81338:CDS |
| CTTAGTCAATGTAGAGAAAT+TGG | 0.214466 | 5.2:+80424848 | MS.gene81338:CDS |
| CTTTAATCTTCTACCTTGTT+AGG | 0.232655 | 5.2:+80424478 | MS.gene81338:CDS |
| GAAGAATATTTGCAGTGTTT+TGG | 0.270066 | 5.2:+80424952 | MS.gene81338:CDS |
| TGTTGAACAAACACAGTAAA+AGG | 0.292737 | 5.2:-80424883 | None:intergenic |
| TGTCACAATTGTAAAATATA+AGG | 0.307372 | 5.2:-80424541 | None:intergenic |
| GAAAATGACCAATTATGATT+TGG | 0.325083 | 5.2:+80425076 | MS.gene81338:CDS |
| ACAATTACAACTCTTGGTTA+TGG | 0.337875 | 5.2:+80424903 | MS.gene81338:CDS |
| TAGAACGGAGGAGCCTTCTT+TGG | 0.342691 | 5.2:-80424314 | None:intergenic |
| AAAAGTGGCTATAATCCTTA+TGG | 0.344112 | 5.2:+80424437 | MS.gene81338:CDS |
| CCCTTTCTGAGGCCATATTT+GGG | 0.348945 | 5.2:+80424394 | MS.gene81338:CDS |
| TGCGGCTTCCAAATCATAAT+TGG | 0.355383 | 5.2:-80425084 | None:intergenic |
| TTTCTCCGGAATGGCGTTGA+TGG | 0.365822 | 5.2:+80424635 | MS.gene81338:CDS |
| TGGATGTAGATGCCCAAATA+TGG | 0.385877 | 5.2:-80424406 | None:intergenic |
| ACAAAAGGCACTTGTTAAAT+GGG | 0.414401 | 5.2:+80425043 | MS.gene81338:CDS |
| TAGTCCCATCAACGCCATTC+CGG | 0.419499 | 5.2:-80424640 | None:intergenic |
| TGTTCAACAATTACAACTCT+TGG | 0.420374 | 5.2:+80424897 | MS.gene81338:CDS |
| AAGCAAAGCAGCAGATTACT+TGG | 0.421571 | 5.2:+80424668 | MS.gene81338:CDS |
| CCCAAATATGGCCTCAGAAA+GGG | 0.440438 | 5.2:-80424394 | None:intergenic |
| TTGTTAAATGGGTTCTTACA+AGG | 0.443343 | 5.2:+80425054 | MS.gene81338:CDS |
| TTCTCCGGAATGGCGTTGAT+GGG | 0.448679 | 5.2:+80424636 | MS.gene81338:CDS |
| GTCCTGTGATCTCAATAGTA+AGG | 0.450755 | 5.2:-80424259 | None:intergenic |
| ACAGGACACTGTGGCTCAAA+AGG | 0.460014 | 5.2:+80424275 | MS.gene81338:CDS |
| TCGTTTATCAACAAAGGAGC+AGG | 0.462707 | 5.2:-80424357 | None:intergenic |
| AGTAATCTGCTGCTTTGCTT+AGG | 0.463315 | 5.2:-80424665 | None:intergenic |
| ACAATGACCACAGTTGGATA+TGG | 0.469742 | 5.2:+80424561 | MS.gene81338:CDS |
| AGCTCCTTTAAAATTTCACT+TGG | 0.474112 | 5.2:-80424747 | None:intergenic |
| AAAAGTTTCTCTACTCAAGC+TGG | 0.474950 | 5.2:+80424930 | MS.gene81338:CDS |
| CCTTGATTTGGTTCCTAACA+AGG | 0.475820 | 5.2:-80424491 | None:intergenic |
| ATTTATAAGCTCAAAGAGAT+GGG | 0.476286 | 5.2:+80425810 | MS.gene81338:CDS |
| AGATATAACACTTGTGATGA+AGG | 0.479889 | 5.2:+80425848 | MS.gene81338:CDS |
| CCTTGTTAGGAACCAAATCA+AGG | 0.487447 | 5.2:+80424491 | MS.gene81338:CDS |
| GAGCTTGACATTGATCAGTC+TGG | 0.496153 | 5.2:+80425879 | MS.gene81338:CDS |
| AAACACCGAAAACAGACAAA+AGG | 0.497203 | 5.2:+80425028 | MS.gene81338:CDS |
| GCCGCAGATCTTGATGAGGA+TGG | 0.508757 | 5.2:+80425101 | MS.gene81338:CDS |
| TTGATGAGGATGGGACTGTT+GGG | 0.510565 | 5.2:+80425111 | MS.gene81338:CDS |
| CTTATGGTCTATTTAGGTGT+AGG | 0.511721 | 5.2:+80424453 | MS.gene81338:CDS |
| CTTGATGAGGATGGGACTGT+TGG | 0.512385 | 5.2:+80425110 | MS.gene81338:CDS |
| TATTTATAAGCTCAAAGAGA+TGG | 0.513290 | 5.2:+80425809 | MS.gene81338:CDS |
| CTACACCTAAATAGACCATA+AGG | 0.525776 | 5.2:-80424452 | None:intergenic |
| GCCCAAATATGGCCTCAGAA+AGG | 0.525908 | 5.2:-80424395 | None:intergenic |
| ATTGTGACAATGACCACAGT+TGG | 0.542941 | 5.2:+80424555 | MS.gene81338:CDS |
| CCAAATATGGCCTCAGAAAG+GGG | 0.549928 | 5.2:-80424393 | None:intergenic |
| TTGTAAAATATAAGGCATCA+AGG | 0.551875 | 5.2:-80424533 | None:intergenic |
| CCGCAGATCTTGATGAGGAT+GGG | 0.555328 | 5.2:+80425102 | MS.gene81338:CDS |
| AAGGACGATTAAACCAAAGA+AGG | 0.555389 | 5.2:+80424301 | MS.gene81338:CDS |
| TCTTTGTCGTTTATCAACAA+AGG | 0.566507 | 5.2:-80424363 | None:intergenic |
| TGTTTAGTTCAGCCATGTAG+AGG | 0.586266 | 5.2:-80425010 | None:intergenic |
| TCCTGTGATCTCAATAGTAA+GGG | 0.587155 | 5.2:-80424258 | None:intergenic |
| TGTGAGGAGCACTTCTAGAA+CGG | 0.588750 | 5.2:-80424329 | None:intergenic |
| GCCCTTACTATTGAGATCAC+AGG | 0.597412 | 5.2:+80424257 | MS.gene81338:CDS |
| TAAGGTCACTATTGGGAACA+AGG | 0.603841 | 5.2:-80424587 | None:intergenic |
| ACTGTGGCTCAAAAGGCTAA+AGG | 0.606518 | 5.2:+80424282 | MS.gene81338:CDS |
| CTTGTTAGGAACCAAATCAA+GGG | 0.608102 | 5.2:+80424492 | MS.gene81338:CDS |
| CCCATCCTCATCAAGATCTG+CGG | 0.631851 | 5.2:-80425102 | None:intergenic |
| TTTATAAGCTCAAAGAGATG+GGG | 0.636037 | 5.2:+80425811 | MS.gene81338:CDS |
| GAGGAGCACTTCTAGAACGG+AGG | 0.643797 | 5.2:-80424326 | None:intergenic |
| AGAATCGATTCCCCTTTCTG+AGG | 0.645736 | 5.2:+80424383 | MS.gene81338:CDS |
| GGAAGCCGCAGATCTTGATG+AGG | 0.654838 | 5.2:+80425097 | MS.gene81338:CDS |
| AAAGGAGCAGGATCTGTGTG+AGG | 0.683580 | 5.2:-80424345 | None:intergenic |
| AAGGTCACCATATCCAACTG+TGG | 0.725731 | 5.2:-80424568 | None:intergenic |
| ATTGAGATCACAGGACACTG+TGG | 0.729465 | 5.2:+80424266 | MS.gene81338:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATATATTTAAACCAT+TGG | - | chr5.2:80425738-80425757 | None:intergenic | 15.0% |
| !! | TTCATTTATTTGAATATCTT+TGG | + | chr5.2:80425756-80425775 | MS.gene81338:intron | 15.0% |
| !!! | TTGATATTTTAATATGACAT+TGG | + | chr5.2:80425679-80425698 | MS.gene81338:intron | 15.0% |
| !! | ACGAAAAATAAATTTAGATG+AGG | - | chr5.2:80425202-80425221 | None:intergenic | 20.0% |
| !! | AGTTGAGTTACAAATTTATA+AGG | + | chr5.2:80425624-80425643 | MS.gene81338:intron | 20.0% |
| !! | ATATGAAATGAAAGTTCATT+AGG | - | chr5.2:80425250-80425269 | None:intergenic | 20.0% |
| !! | CGAAAAATAAATTTAGATGA+GGG | - | chr5.2:80425201-80425220 | None:intergenic | 20.0% |
| !! | GTTGAGTTACAAATTTATAA+GGG | + | chr5.2:80425625-80425644 | MS.gene81338:intron | 20.0% |
| !! | TGTCACAATTGTAAAATATA+AGG | - | chr5.2:80424544-80424563 | None:intergenic | 20.0% |
| !! | TTGAACTAAATATTGTAACA+TGG | - | chr5.2:80425375-80425394 | None:intergenic | 20.0% |
| !!! | AGTACTATTTTACTATGAAA+AGG | - | chr5.2:80425541-80425560 | None:intergenic | 20.0% |
| ! | ACCTAACTCATTAGAATAAA+GGG | - | chr5.2:80425580-80425599 | None:intergenic | 25.0% |
| ! | ATAATCCTTATGGTCTATTT+AGG | + | chr5.2:80424447-80424466 | MS.gene81338:CDS | 25.0% |
| ! | ATTTATAAGCTCAAAGAGAT+GGG | + | chr5.2:80425810-80425829 | MS.gene81338:CDS | 25.0% |
| ! | GAAAATGACCAATTATGATT+TGG | + | chr5.2:80425076-80425095 | MS.gene81338:CDS | 25.0% |
| ! | TAAAAATAGAAGTCACACAA+TGG | - | chr5.2:80425507-80425526 | None:intergenic | 25.0% |
| ! | TACCTAACTCATTAGAATAA+AGG | - | chr5.2:80425581-80425600 | None:intergenic | 25.0% |
| ! | TATAGACTGTTAGATCATAT+TGG | + | chr5.2:80425340-80425359 | MS.gene81338:intron | 25.0% |
| ! | TATTTATAAGCTCAAAGAGA+TGG | + | chr5.2:80425809-80425828 | MS.gene81338:CDS | 25.0% |
| !! | TTGTAAAATATAAGGCATCA+AGG | - | chr5.2:80424536-80424555 | None:intergenic | 25.0% |
| !!! | ATTGCTCTAGTTTTTTTCTT+CGG | + | chr5.2:80425268-80425287 | MS.gene81338:intron | 25.0% |
| !!! | TGTGTGACTTCTATTTTTAA+TGG | + | chr5.2:80425508-80425527 | MS.gene81338:intron | 25.0% |
| AAAAGTGGCTATAATCCTTA+TGG | + | chr5.2:80424437-80424456 | MS.gene81338:CDS | 30.0% | |
| ACAATTACAACTCTTGGTTA+TGG | + | chr5.2:80424903-80424922 | MS.gene81338:CDS | 30.0% | |
| ACCCTTTATTCTAATGAGTT+AGG | + | chr5.2:80425576-80425595 | MS.gene81338:intron | 30.0% | |
| AGACTAAGGATTTATAAGCA+AGG | - | chr5.2:80425473-80425492 | None:intergenic | 30.0% | |
| AGATATAACACTTGTGATGA+AGG | + | chr5.2:80425848-80425867 | MS.gene81338:CDS | 30.0% | |
| CAGTGAAAAGTAAAATGAGA+TGG | + | chr5.2:80425704-80425723 | MS.gene81338:intron | 30.0% | |
| CATTAGAATAAAGGGTAGTT+AGG | - | chr5.2:80425572-80425591 | None:intergenic | 30.0% | |
| CTTAGTCAATGTAGAGAAAT+TGG | + | chr5.2:80424848-80424867 | MS.gene81338:CDS | 30.0% | |
| CTTTAATCTTCTACCTTGTT+AGG | + | chr5.2:80424478-80424497 | MS.gene81338:CDS | 30.0% | |
| GAAAAGTAAAATGAGATGGT+GGG | + | chr5.2:80425708-80425727 | MS.gene81338:intron | 30.0% | |
| TGAAAAGTAAAATGAGATGG+TGG | + | chr5.2:80425707-80425726 | MS.gene81338:intron | 30.0% | |
| TGGATAAAATAGTGAGACTA+AGG | - | chr5.2:80425487-80425506 | None:intergenic | 30.0% | |
| TGTTCAACAATTACAACTCT+TGG | + | chr5.2:80424897-80424916 | MS.gene81338:CDS | 30.0% | |
| TGTTGAACAAACACAGTAAA+AGG | - | chr5.2:80424886-80424905 | None:intergenic | 30.0% | |
| TTTATAAGCTCAAAGAGATG+GGG | + | chr5.2:80425811-80425830 | MS.gene81338:CDS | 30.0% | |
| ! | AGTCTATACCGATTATTAAC+AGG | - | chr5.2:80425328-80425347 | None:intergenic | 30.0% |
| ! | ATATTTAGTTCAAACCCGAT+TGG | + | chr5.2:80425382-80425401 | MS.gene81338:intron | 30.0% |
| ! | GAAGAATATTTGCAGTGTTT+TGG | + | chr5.2:80424952-80424971 | MS.gene81338:CDS | 30.0% |
| ! | TCGTTTAAGTTAAATGCCAA+AGG | + | chr5.2:80425218-80425237 | MS.gene81338:intron | 30.0% |
| ! | TCTTTGTCGTTTATCAACAA+AGG | - | chr5.2:80424366-80424385 | None:intergenic | 30.0% |
| ! | TGGTCCAAGTGAAATTTTAA+AGG | + | chr5.2:80424743-80424762 | MS.gene81338:CDS | 30.0% |
| ! | TTGTTAAATGGGTTCTTACA+AGG | + | chr5.2:80425054-80425073 | MS.gene81338:CDS | 30.0% |
| !! | ACAAAAGGCACTTGTTAAAT+GGG | + | chr5.2:80425043-80425062 | MS.gene81338:CDS | 30.0% |
| !! | ACATCCAAGCTTTAAAAAAG+TGG | + | chr5.2:80424422-80424441 | MS.gene81338:CDS | 30.0% |
| !! | AGCTCCTTTAAAATTTCACT+TGG | - | chr5.2:80424750-80424769 | None:intergenic | 30.0% |
| !! | AGTTTTGTAAGGTCACTATT+GGG | - | chr5.2:80424597-80424616 | None:intergenic | 30.0% |
| !!! | ATAGCCACTTTTTTAAAGCT+TGG | - | chr5.2:80424429-80424448 | None:intergenic | 30.0% |
| !!! | CTTTGGTTTTATTGTTCACA+GGG | + | chr5.2:80425773-80425792 | MS.gene81338:intron | 30.0% |
| !!! | TAGTTTTGTAAGGTCACTAT+TGG | - | chr5.2:80424598-80424617 | None:intergenic | 30.0% |
| !!! | TCTTTGGTTTTATTGTTCAC+AGG | + | chr5.2:80425772-80425791 | MS.gene81338:intron | 30.0% |
| !!! | TTGCTCTAGTTTTTTTCTTC+GGG | + | chr5.2:80425269-80425288 | MS.gene81338:intron | 30.0% |
| AAAAGTTTCTCTACTCAAGC+TGG | + | chr5.2:80424930-80424949 | MS.gene81338:CDS | 35.0% | |
| AAACACCGAAAACAGACAAA+AGG | + | chr5.2:80425028-80425047 | MS.gene81338:CDS | 35.0% | |
| AAGGACGATTAAACCAAAGA+AGG | + | chr5.2:80424301-80424320 | MS.gene81338:CDS | 35.0% | |
| AAGGATTTATAAGCAAGGTG+AGG | - | chr5.2:80425468-80425487 | None:intergenic | 35.0% | |
| CTACACCTAAATAGACCATA+AGG | - | chr5.2:80424455-80424474 | None:intergenic | 35.0% | |
| CTTATGGTCTATTTAGGTGT+AGG | + | chr5.2:80424453-80424472 | MS.gene81338:CDS | 35.0% | |
| CTTGTTAGGAACCAAATCAA+GGG | + | chr5.2:80424492-80424511 | MS.gene81338:CDS | 35.0% | |
| GTTCATTAGGTTTAGACCTT+TGG | - | chr5.2:80425237-80425256 | None:intergenic | 35.0% | |
| TCCTGTGATCTCAATAGTAA+GGG | - | chr5.2:80424261-80424280 | None:intergenic | 35.0% | |
| ! | AAGTGCCTTTTGTCTGTTTT+CGG | - | chr5.2:80425036-80425055 | None:intergenic | 35.0% |
| ! | CTGTTTTCATTCCCTTGATT+TGG | - | chr5.2:80424506-80424525 | None:intergenic | 35.0% |
| ! | TTTCACTTGGACCAACTTTT+TGG | - | chr5.2:80424737-80424756 | None:intergenic | 35.0% |
| !! | GACAAAAGGCACTTGTTAAA+TGG | + | chr5.2:80425042-80425061 | MS.gene81338:CDS | 35.0% |
| !! | TCTTTTGATTCTCGTTATCG+CGG | + | chr5.2:80424815-80424834 | MS.gene81338:CDS | 35.0% |
| !!! | TGCTCTAGTTTTTTTCTTCG+GGG | + | chr5.2:80425270-80425289 | MS.gene81338:intron | 35.0% |
| AAGCAAAGCAGCAGATTACT+TGG | + | chr5.2:80424668-80424687 | MS.gene81338:CDS | 40.0% | |
| ACAATGACCACAGTTGGATA+TGG | + | chr5.2:80424561-80424580 | MS.gene81338:CDS | 40.0% | |
| ATTGTGACAATGACCACAGT+TGG | + | chr5.2:80424555-80424574 | MS.gene81338:CDS | 40.0% | |
| CCAAAAGGTCAAAAGCCTAA+TGG | + | chr5.2:80425436-80425455 | MS.gene81338:intron | 40.0% | |
| CCTTGTTAGGAACCAAATCA+AGG | + | chr5.2:80424491-80424510 | MS.gene81338:CDS | 40.0% | |
| GTCCTGTGATCTCAATAGTA+AGG | - | chr5.2:80424262-80424281 | None:intergenic | 40.0% | |
| TAAGGTCACTATTGGGAACA+AGG | - | chr5.2:80424590-80424609 | None:intergenic | 40.0% | |
| TCGTTTATCAACAAAGGAGC+AGG | - | chr5.2:80424360-80424379 | None:intergenic | 40.0% | |
| TGCGGCTTCCAAATCATAAT+TGG | - | chr5.2:80425087-80425106 | None:intergenic | 40.0% | |
| TGGATGTAGATGCCCAAATA+TGG | - | chr5.2:80424409-80424428 | None:intergenic | 40.0% | |
| TGTGGCGACCTGTTAATAAT+CGG | + | chr5.2:80425317-80425336 | MS.gene81338:intron | 40.0% | |
| TTATAAGCAAGGTGAGGTGA+AGG | - | chr5.2:80425462-80425481 | None:intergenic | 40.0% | |
| ! | AGCTCAGTTTTTCCTCTACA+TGG | + | chr5.2:80424998-80425017 | MS.gene81338:CDS | 40.0% |
| ! | CCATTAGGCTTTTGACCTTT+TGG | - | chr5.2:80425439-80425458 | None:intergenic | 40.0% |
| ! | TGTTTAGTTCAGCCATGTAG+AGG | - | chr5.2:80425013-80425032 | None:intergenic | 40.0% |
| ! | TTTAGTTCAAACCCGATTGG+AGG | + | chr5.2:80425385-80425404 | MS.gene81338:intron | 40.0% |
| !! | AGTAATCTGCTGCTTTGCTT+AGG | - | chr5.2:80424668-80424687 | None:intergenic | 40.0% |
| !! | CCTTGATTTGGTTCCTAACA+AGG | - | chr5.2:80424494-80424513 | None:intergenic | 40.0% |
| !! | CTTTTGATTCTCGTTATCGC+GGG | + | chr5.2:80424816-80424835 | MS.gene81338:CDS | 40.0% |
| !! | GCAGTGTTTTGGATACTAAC+AGG | + | chr5.2:80424963-80424982 | MS.gene81338:CDS | 40.0% |
| !! | GGGCTCATTTTTATCATTGC+TGG | - | chr5.2:80424241-80424260 | None:intergenic | 40.0% |
| !! | TTTTGATTCTCGTTATCGCG+GGG | + | chr5.2:80424817-80424836 | MS.gene81338:CDS | 40.0% |
| AAGGTCACCATATCCAACTG+TGG | - | chr5.2:80424571-80424590 | None:intergenic | 45.0% | |
| ACTGTGGCTCAAAAGGCTAA+AGG | + | chr5.2:80424282-80424301 | MS.gene81338:CDS | 45.0% | |
| ATGCACATGCGCCAAAAAGT+TGG | + | chr5.2:80424723-80424742 | MS.gene81338:CDS | 45.0% | |
| ATTGAGATCACAGGACACTG+TGG | + | chr5.2:80424266-80424285 | MS.gene81338:CDS | 45.0% | |
| CCAAATATGGCCTCAGAAAG+GGG | - | chr5.2:80424396-80424415 | None:intergenic | 45.0% | |
| CCCAAATATGGCCTCAGAAA+GGG | - | chr5.2:80424397-80424416 | None:intergenic | 45.0% | |
| CCTCTAAACACTCCTCCAAT+CGG | - | chr5.2:80425400-80425419 | None:intergenic | 45.0% | |
| CTCTAAACACTCCTCCAATC+GGG | - | chr5.2:80425399-80425418 | None:intergenic | 45.0% | |
| GAGCTTGACATTGATCAGTC+TGG | + | chr5.2:80425879-80425898 | MS.gene81338:CDS | 45.0% | |
| GCCCTTACTATTGAGATCAC+AGG | + | chr5.2:80424257-80424276 | MS.gene81338:CDS | 45.0% | |
| GTGGGGATTCATGATCCAAA+AGG | + | chr5.2:80425421-80425440 | MS.gene81338:intron | 45.0% | |
| TTGATGAGGATGGGACTGTT+GGG | + | chr5.2:80425111-80425130 | MS.gene81338:CDS | 45.0% | |
| ! | AGAATCGATTCCCCTTTCTG+AGG | + | chr5.2:80424383-80424402 | MS.gene81338:CDS | 45.0% |
| !! | AACTTTTTGGCGCATGTGCA+TGG | - | chr5.2:80424724-80424743 | None:intergenic | 45.0% |
| !! | CCCTTTCTGAGGCCATATTT+GGG | + | chr5.2:80424394-80424413 | MS.gene81338:CDS | 45.0% |
| !! | TGTGAGGAGCACTTCTAGAA+CGG | - | chr5.2:80424332-80424351 | None:intergenic | 45.0% |
| !!! | CGCAAGCGAGTAGTTTTGTA+AGG | - | chr5.2:80424608-80424627 | None:intergenic | 45.0% |
| !!! | CGCTTTTGTTTTCTCCGGAA+TGG | + | chr5.2:80424626-80424645 | MS.gene81338:CDS | 45.0% |
| !!! | GCTTGCGCTTTTGTTTTCTC+CGG | + | chr5.2:80424621-80424640 | MS.gene81338:CDS | 45.0% |
| AAAGGAGCAGGATCTGTGTG+AGG | - | chr5.2:80424348-80424367 | None:intergenic | 50.0% | |
| AAGGTGAGGTGAAGGCCATT+AGG | - | chr5.2:80425454-80425473 | None:intergenic | 50.0% | |
| ACAGGACACTGTGGCTCAAA+AGG | + | chr5.2:80424275-80424294 | MS.gene81338:CDS | 50.0% | |
| CCCATCCTCATCAAGATCTG+CGG | - | chr5.2:80425105-80425124 | None:intergenic | 50.0% | |
| CCGCAGATCTTGATGAGGAT+GGG | + | chr5.2:80425102-80425121 | MS.gene81338:CDS | 50.0% | |
| CTTGATGAGGATGGGACTGT+TGG | + | chr5.2:80425110-80425129 | MS.gene81338:CDS | 50.0% | |
| GCCCAAATATGGCCTCAGAA+AGG | - | chr5.2:80424398-80424417 | None:intergenic | 50.0% | |
| TAGAACGGAGGAGCCTTCTT+TGG | - | chr5.2:80424317-80424336 | None:intergenic | 50.0% | |
| TAGTCCCATCAACGCCATTC+CGG | - | chr5.2:80424643-80424662 | None:intergenic | 50.0% | |
| ! | TTTCTCCGGAATGGCGTTGA+TGG | + | chr5.2:80424635-80424654 | MS.gene81338:CDS | 50.0% |
| !! | CCCCTTTCTGAGGCCATATT+TGG | + | chr5.2:80424393-80424412 | MS.gene81338:CDS | 50.0% |
| !! | CCGATTGGAGGAGTGTTTAG+AGG | + | chr5.2:80425397-80425416 | MS.gene81338:intron | 50.0% |
| !! | GAGGAGTGTTTAGAGGAGTG+GGG | + | chr5.2:80425404-80425423 | MS.gene81338:intron | 50.0% |
| !! | GGAGGAGTGTTTAGAGGAGT+GGG | + | chr5.2:80425403-80425422 | MS.gene81338:intron | 50.0% |
| !! | TGAGATGGTGGGAGTACCAA+TGG | + | chr5.2:80425719-80425738 | MS.gene81338:intron | 50.0% |
| !! | TGGAGGAGTGTTTAGAGGAG+TGG | + | chr5.2:80425402-80425421 | MS.gene81338:intron | 50.0% |
| !! | TTCTCCGGAATGGCGTTGAT+GGG | + | chr5.2:80424636-80424655 | MS.gene81338:CDS | 50.0% |
| CACACTGCCTAACTCCGTCA+AGG | - | chr5.2:80425301-80425320 | None:intergenic | 55.0% | |
| CTTGACGGAGTTAGGCAGTG+TGG | + | chr5.2:80425299-80425318 | MS.gene81338:intron | 55.0% | |
| GCCGCAGATCTTGATGAGGA+TGG | + | chr5.2:80425101-80425120 | MS.gene81338:CDS | 55.0% | |
| GGAAGCCGCAGATCTTGATG+AGG | + | chr5.2:80425097-80425116 | MS.gene81338:CDS | 55.0% | |
| GGCTTGTCCTTGACGGAGTT+AGG | + | chr5.2:80425291-80425310 | MS.gene81338:intron | 55.0% | |
| TCTTCGGGGCTTGTCCTTGA+CGG | + | chr5.2:80425284-80425303 | MS.gene81338:intron | 55.0% | |
| !! | GAGGAGCACTTCTAGAACGG+AGG | - | chr5.2:80424329-80424348 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80424234 | 80425944 | 80424234 | ID=MS.gene81338 |
| chr5.2 | mRNA | 80424234 | 80425944 | 80424234 | ID=MS.gene81338.t1;Parent=MS.gene81338 |
| chr5.2 | exon | 80424234 | 80425132 | 80424234 | ID=MS.gene81338.t1.exon1;Parent=MS.gene81338.t1 |
| chr5.2 | CDS | 80424234 | 80425132 | 80424234 | ID=cds.MS.gene81338.t1;Parent=MS.gene81338.t1 |
| chr5.2 | exon | 80425794 | 80425944 | 80425794 | ID=MS.gene81338.t1.exon2;Parent=MS.gene81338.t1 |
| chr5.2 | CDS | 80425794 | 80425944 | 80425794 | ID=cds.MS.gene81338.t1;Parent=MS.gene81338.t1 |
| Gene Sequence |
| Protein sequence |
