Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81342.t1 | XP_003617791.1 | 99.3 | 303 | 2 | 0 | 1 | 303 | 1 | 303 | 9.00E-158 | 566.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81342.t1 | Q69ZQ2 | 49.2 | 299 | 136 | 6 | 1 | 299 | 1 | 283 | 9.0e-58 | 225.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81342.t1 | G7K4N4 | 99.3 | 303 | 2 | 0 | 1 | 303 | 1 | 303 | 6.5e-158 | 566.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81342 | MS.gene82776 | PPI |
| MS.gene81342 | MS.gene75072 | PPI |
| MS.gene81342 | MS.gene53517 | PPI |
| MS.gene81342 | MS.gene053443 | PPI |
| MS.gene81342 | MS.gene66321 | PPI |
| MS.gene81342 | MS.gene022597 | PPI |
| MS.gene81342 | MS.gene032681 | PPI |
| MS.gene81342 | MS.gene072740 | PPI |
| MS.gene81342 | MS.gene073888 | PPI |
| MS.gene81342 | MS.gene01351 | PPI |
| MS.gene81342 | MS.gene002376 | PPI |
| MS.gene81342 | MS.gene047509 | PPI |
| MS.gene053099 | MS.gene81342 | PPI |
| MS.gene81342 | MS.gene22321 | PPI |
| MS.gene81342 | MS.gene064051 | PPI |
| MS.gene81342 | MS.gene030285 | PPI |
| MS.gene81342 | MS.gene024669 | PPI |
| MS.gene81342 | MS.gene21651 | PPI |
| MS.gene81342 | MS.gene66329 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81342.t1 | MTR_5g095510 | 99.340 | 303 | 2 | 0 | 1 | 303 | 1 | 303 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81342.t1 | AT3G18790 | 76.238 | 303 | 69 | 2 | 1 | 303 | 1 | 300 | 1.84e-149 | 421 |
Find 95 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGCTTATTATGGTTAT+AGG | 0.163690 | 5.2:+80348992 | MS.gene81342:CDS |
| AGGATTAATGCTGCTTATTA+TGG | 0.220615 | 5.2:+80348985 | MS.gene81342:CDS |
| AGAAAAGGACGGCGTTCTTT+AGG | 0.280108 | 5.2:-80348580 | None:intergenic |
| TGCTGCTTATTATGGTTATA+GGG | 0.299741 | 5.2:+80348993 | MS.gene81342:CDS |
| GGATGATGAAGATGGGATAT+TGG | 0.324169 | 5.2:+80349014 | MS.gene81342:CDS |
| GGGCCGGGGTATAGATATTT+TGG | 0.329847 | 5.2:+80348874 | MS.gene81342:CDS |
| GAGGGAGATGAGGGAGAGGT+TGG | 0.336839 | 5.2:+80349227 | MS.gene81342:CDS |
| ACCTCAACGAAGCTGATAAA+TGG | 0.339626 | 5.2:+80348620 | MS.gene81342:CDS |
| TTATGTCAGTGATGAGCTTA+TGG | 0.365007 | 5.2:+80349350 | MS.gene81342:CDS |
| TTCGTTGAGGTCACGGCATT+CGG | 0.365045 | 5.2:-80348608 | None:intergenic |
| GCAGAATGCCTCGCATAATT+CGG | 0.368301 | 5.2:-80348796 | None:intergenic |
| TGTTGTGCATGTGCCGTTGC+CGG | 0.394519 | 5.2:+80349269 | MS.gene81342:CDS |
| GAGAGGAGAATTGTTGAGCT+TGG | 0.400059 | 5.2:+80348769 | MS.gene81342:CDS |
| TTTGAATCTCGGCGACTTTG+CGG | 0.401696 | 5.2:-80348669 | None:intergenic |
| GGGAGAGGTTGGATAGGATA+AGG | 0.401870 | 5.2:+80349091 | MS.gene81342:CDS |
| AGAAGAGGATGTGGTGGAGG+AGG | 0.404204 | 5.2:+80349191 | MS.gene81342:CDS |
| CAGCAAATCATGCGTGAAAT+CGG | 0.409841 | 5.2:+80348646 | MS.gene81342:CDS |
| ATTGGAGCGGGTTGAGGCAC+CGG | 0.422542 | 5.2:+80349032 | MS.gene81342:CDS |
| TTCTGCGAAAATGACTGATT+TGG | 0.430591 | 5.2:+80348813 | MS.gene81342:CDS |
| AGCCGCCAGAGTTGAGGAAA+CGG | 0.430737 | 5.2:+80348938 | MS.gene81342:CDS |
| GATGAAGGAGAGGGAGATGA+GGG | 0.439819 | 5.2:+80349218 | MS.gene81342:CDS |
| GGTTGAGGAGTGGGAGAGGT+TGG | 0.442822 | 5.2:+80349080 | MS.gene81342:CDS |
| GGAAGAAGAGGATGTGGTGG+AGG | 0.450447 | 5.2:+80349188 | MS.gene81342:CDS |
| TTCTCAATCTCCTTCTCATC+CGG | 0.450854 | 5.2:-80349288 | None:intergenic |
| CGAGATATGATATTTATAAG+AGG | 0.453995 | 5.2:+80348965 | MS.gene81342:CDS |
| GCGGGTTGAGGCACCGGCTG+AGG | 0.458475 | 5.2:+80349038 | MS.gene81342:CDS |
| CTAGGAAGGCTGTGAGGAGT+GGG | 0.459243 | 5.2:+80349121 | MS.gene81342:CDS |
| TGAGAAGGAGATTGAGAAGA+TGG | 0.468803 | 5.2:+80349293 | MS.gene81342:CDS |
| GGATGAAGGAGAGGGAGATG+AGG | 0.468850 | 5.2:+80349217 | MS.gene81342:CDS |
| ATAGGATAAGGAAGGAAGCT+AGG | 0.470791 | 5.2:+80349103 | MS.gene81342:CDS |
| TATGAGACGTGAGGCGGTTG+AGG | 0.478918 | 5.2:+80349065 | MS.gene81342:CDS |
| AGAGGTTGGATGAGAAAGAG+AGG | 0.481023 | 5.2:+80349241 | MS.gene81342:CDS |
| GGAGGAGAGGATGAAGGAGA+GGG | 0.481673 | 5.2:+80349209 | MS.gene81342:CDS |
| AGGAGAGGGAGATGAGGGAG+AGG | 0.482030 | 5.2:+80349223 | MS.gene81342:CDS |
| GAGGAGTGGGGAGGTTGTTG+AGG | 0.482912 | 5.2:+80349134 | MS.gene81342:CDS |
| GAGATTCAAAACGAAGGTCT+TGG | 0.485837 | 5.2:+80348682 | MS.gene81342:CDS |
| TGGGATATTGGAGCGGGTTG+AGG | 0.487195 | 5.2:+80349026 | MS.gene81342:CDS |
| AGGATGTGGTGGAGGAGGAG+AGG | 0.489002 | 5.2:+80349196 | MS.gene81342:CDS |
| TATCAGCTTCGTTGAGGTCA+CGG | 0.490438 | 5.2:-80348615 | None:intergenic |
| GGTGGAGGAGGAGAGGATGA+AGG | 0.490815 | 5.2:+80349203 | MS.gene81342:CDS |
| GGTTATAGGGATGATGAAGA+TGG | 0.495151 | 5.2:+80349006 | MS.gene81342:CDS |
| TGGTGCGGCGAAGAAATTGC+CGG | 0.497574 | 5.2:+80348894 | MS.gene81342:CDS |
| AGGAGTGGGAGAGGTTGGAT+AGG | 0.498229 | 5.2:+80349085 | MS.gene81342:CDS |
| GGTGCGGCGAAGAAATTGCC+GGG | 0.501210 | 5.2:+80348895 | MS.gene81342:CDS |
| ACGTGAGGCGGTTGAGGAGT+GGG | 0.503478 | 5.2:+80349071 | MS.gene81342:CDS |
| CGGCATTCGGAAGCGAGAAA+AGG | 0.513747 | 5.2:-80348595 | None:intergenic |
| TGAGGAAGAAGAGGATGTGG+TGG | 0.519928 | 5.2:+80349185 | MS.gene81342:CDS |
| ATGAAGATGGGATATTGGAG+CGG | 0.526437 | 5.2:+80349019 | MS.gene81342:CDS |
| GTTCCTAACCCTAGTGGAAG+GGG | 0.527308 | 5.2:+80348853 | MS.gene81342:CDS |
| TAATTTCATCGTTGAGATCA+CGG | 0.528612 | 5.2:-80348717 | None:intergenic |
| GTCCTCCGTTTCCTCAACTC+TGG | 0.530903 | 5.2:-80348943 | None:intergenic |
| GATAAGGAAGGAAGCTAGGA+AGG | 0.534959 | 5.2:+80349107 | MS.gene81342:CDS |
| GCGAAAATGACTGATTTGGA+TGG | 0.540673 | 5.2:+80348817 | MS.gene81342:CDS |
| TTGAGGTTACTGCGGCTACG+AGG | 0.542022 | 5.2:+80349151 | MS.gene81342:CDS |
| GATTCTTCATGAGGAAGAAG+AGG | 0.543489 | 5.2:+80349176 | MS.gene81342:CDS |
| AGGAGGAGAGGATGAAGGAG+AGG | 0.544445 | 5.2:+80349208 | MS.gene81342:CDS |
| GCTAGGAAGGCTGTGAGGAG+TGG | 0.544777 | 5.2:+80349120 | MS.gene81342:CDS |
| AGGCGGTTGAGGAGTGGGAG+AGG | 0.545126 | 5.2:+80349076 | MS.gene81342:CDS |
| TTGAGAAGCCGCCAGAGTTG+AGG | 0.545601 | 5.2:+80348932 | MS.gene81342:CDS |
| GTTATAGGGATGATGAAGAT+GGG | 0.553326 | 5.2:+80349007 | MS.gene81342:CDS |
| GAGGTTGGATAGGATAAGGA+AGG | 0.556697 | 5.2:+80349095 | MS.gene81342:CDS |
| ATGTTCCTAACCCTAGTGGA+AGG | 0.561136 | 5.2:+80348851 | MS.gene81342:CDS |
| GCCATTTATCAGCTTCGTTG+AGG | 0.567772 | 5.2:-80348621 | None:intergenic |
| AGGAGAATTGTTGAGCTTGG+AGG | 0.570345 | 5.2:+80348772 | MS.gene81342:CDS |
| CGTCTCATACATTCCTCAGC+CGG | 0.570966 | 5.2:-80349051 | None:intergenic |
| GACGTGAGGCGGTTGAGGAG+TGG | 0.572067 | 5.2:+80349070 | MS.gene81342:CDS |
| GAGGTTGGATGAGAAAGAGA+GGG | 0.574959 | 5.2:+80349242 | MS.gene81342:CDS |
| ATCTCCTTCTCATCCGGCAA+CGG | 0.576259 | 5.2:-80349282 | None:intergenic |
| TCATGAGGAAGAAGAGGATG+TGG | 0.577905 | 5.2:+80349182 | MS.gene81342:CDS |
| GGAGGAGCAGACTGAAGCTA+AGG | 0.586889 | 5.2:+80349371 | MS.gene81342:CDS |
| TGAAGATGGGATATTGGAGC+GGG | 0.592242 | 5.2:+80349020 | MS.gene81342:CDS |
| GTTGATGTTCCTAACCCTAG+TGG | 0.600173 | 5.2:+80348847 | MS.gene81342:CDS |
| TGTGCCGTTGCCGGATGAGA+AGG | 0.605428 | 5.2:+80349278 | MS.gene81342:CDS |
| TGTTCCTAACCCTAGTGGAA+GGG | 0.609021 | 5.2:+80348852 | MS.gene81342:CDS |
| TAGGAAGGCTGTGAGGAGTG+GGG | 0.611922 | 5.2:+80349122 | MS.gene81342:CDS |
| CGAAAATGACTGATTTGGAT+GGG | 0.613601 | 5.2:+80348818 | MS.gene81342:CDS |
| TGAGGTTACTGCGGCTACGA+GGG | 0.625438 | 5.2:+80349152 | MS.gene81342:CDS |
| CTCCGTTTCCTCAACTCTGG+CGG | 0.627535 | 5.2:-80348940 | None:intergenic |
| GTGCGGCGAAGAAATTGCCG+GGG | 0.629933 | 5.2:+80348896 | MS.gene81342:CDS |
| TACGAGGGAGATTCTTCATG+AGG | 0.631904 | 5.2:+80349167 | MS.gene81342:CDS |
| ATTCGGAAGCGAGAAAAGGA+CGG | 0.632653 | 5.2:-80348591 | None:intergenic |
| CATCGTTGAGATCACGGAGA+CGG | 0.646828 | 5.2:-80348711 | None:intergenic |
| GAAGGCTGTGAGGAGTGGGG+AGG | 0.648471 | 5.2:+80349125 | MS.gene81342:CDS |
| GCACCAAAATATCTATACCC+CGG | 0.652148 | 5.2:-80348877 | None:intergenic |
| GGTGTTGCAGAAGAAGAAGA+CGG | 0.654804 | 5.2:+80349314 | MS.gene81342:CDS |
| TTCCTAACCCTAGTGGAAGG+GGG | 0.659153 | 5.2:+80348854 | MS.gene81342:CDS |
| GTCGCCGAGATTCAAAACGA+AGG | 0.671719 | 5.2:+80348676 | MS.gene81342:CDS |
| CGCCAGAGTTGAGGAAACGG+AGG | 0.674224 | 5.2:+80348941 | MS.gene81342:CDS |
| TGAGGAATGTATGAGACGTG+AGG | 0.679862 | 5.2:+80349056 | MS.gene81342:CDS |
| TGCGGCGAAGAAATTGCCGG+GGG | 0.684263 | 5.2:+80348897 | MS.gene81342:CDS |
| TTGGAGGACCGAATTATGCG+AGG | 0.690784 | 5.2:+80348788 | MS.gene81342:CDS |
| TGTCAGTGATGAGCTTATGG+AGG | 0.691036 | 5.2:+80349353 | MS.gene81342:CDS |
| GGAGGTTGTTGAGGTTACTG+CGG | 0.696634 | 5.2:+80349143 | MS.gene81342:CDS |
| AGGAAGCTAGGAAGGCTGTG+AGG | 0.701271 | 5.2:+80349115 | MS.gene81342:CDS |
| GGAATGTATGAGACGTGAGG+CGG | 0.759199 | 5.2:+80349059 | MS.gene81342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CGAGATATGATATTTATAAG+AGG | + | chr5.2:80348965-80348984 | MS.gene81342:CDS | 25.0% |
| TAATTTCATCGTTGAGATCA+CGG | - | chr5.2:80348720-80348739 | None:intergenic | 30.0% | |
| ! | AGGATTAATGCTGCTTATTA+TGG | + | chr5.2:80348985-80349004 | MS.gene81342:CDS | 30.0% |
| ! | ATGCTGCTTATTATGGTTAT+AGG | + | chr5.2:80348992-80349011 | MS.gene81342:CDS | 30.0% |
| ! | TGCTGCTTATTATGGTTATA+GGG | + | chr5.2:80348993-80349012 | MS.gene81342:CDS | 30.0% |
| CATTCGTGAAAAATCGCATT+GGG | + | chr5.2:80348747-80348766 | MS.gene81342:CDS | 35.0% | |
| GTTATAGGGATGATGAAGAT+GGG | + | chr5.2:80349007-80349026 | MS.gene81342:CDS | 35.0% | |
| TCATTCGTGAAAAATCGCAT+TGG | + | chr5.2:80348746-80348765 | MS.gene81342:CDS | 35.0% | |
| TTATGTCAGTGATGAGCTTA+TGG | + | chr5.2:80349350-80349369 | MS.gene81342:CDS | 35.0% | |
| TTCTGCGAAAATGACTGATT+TGG | + | chr5.2:80348813-80348832 | MS.gene81342:CDS | 35.0% | |
| ! | CTTCTTTTCTTCAGCTTTCA+TGG | - | chr5.2:80348557-80348576 | None:intergenic | 35.0% |
| !! | AAGACCTTCGTTTTGAATCT+CGG | - | chr5.2:80348683-80348702 | None:intergenic | 35.0% |
| !! | CGAAAATGACTGATTTGGAT+GGG | + | chr5.2:80348818-80348837 | MS.gene81342:CDS | 35.0% |
| ACCTCAACGAAGCTGATAAA+TGG | + | chr5.2:80348620-80348639 | MS.gene81342:CDS | 40.0% | |
| ATAGGATAAGGAAGGAAGCT+AGG | + | chr5.2:80349103-80349122 | MS.gene81342:CDS | 40.0% | |
| ATGAAGATGGGATATTGGAG+CGG | + | chr5.2:80349019-80349038 | MS.gene81342:CDS | 40.0% | |
| CAGCAAATCATGCGTGAAAT+CGG | + | chr5.2:80348646-80348665 | MS.gene81342:CDS | 40.0% | |
| GAGATTCAAAACGAAGGTCT+TGG | + | chr5.2:80348682-80348701 | MS.gene81342:CDS | 40.0% | |
| GATTCTTCATGAGGAAGAAG+AGG | + | chr5.2:80349176-80349195 | MS.gene81342:CDS | 40.0% | |
| GCACCAAAATATCTATACCC+CGG | - | chr5.2:80348880-80348899 | None:intergenic | 40.0% | |
| GGATGATGAAGATGGGATAT+TGG | + | chr5.2:80349014-80349033 | MS.gene81342:CDS | 40.0% | |
| GGTTATAGGGATGATGAAGA+TGG | + | chr5.2:80349006-80349025 | MS.gene81342:CDS | 40.0% | |
| TGAGAAGGAGATTGAGAAGA+TGG | + | chr5.2:80349293-80349312 | MS.gene81342:CDS | 40.0% | |
| TTCTCAATCTCCTTCTCATC+CGG | - | chr5.2:80349291-80349310 | None:intergenic | 40.0% | |
| !! | GCGAAAATGACTGATTTGGA+TGG | + | chr5.2:80348817-80348836 | MS.gene81342:CDS | 40.0% |
| !!! | GGGGTATAGATATTTTGGTG+CGG | + | chr5.2:80348879-80348898 | MS.gene81342:CDS | 40.0% |
| AGAAAAGGACGGCGTTCTTT+AGG | - | chr5.2:80348583-80348602 | None:intergenic | 45.0% | |
| AGAGGTTGGATGAGAAAGAG+AGG | + | chr5.2:80349241-80349260 | MS.gene81342:CDS | 45.0% | |
| AGGAGAATTGTTGAGCTTGG+AGG | + | chr5.2:80348772-80348791 | MS.gene81342:CDS | 45.0% | |
| ATGTTCCTAACCCTAGTGGA+AGG | + | chr5.2:80348851-80348870 | MS.gene81342:CDS | 45.0% | |
| ATTCGGAAGCGAGAAAAGGA+CGG | - | chr5.2:80348594-80348613 | None:intergenic | 45.0% | |
| GAGAGGAGAATTGTTGAGCT+TGG | + | chr5.2:80348769-80348788 | MS.gene81342:CDS | 45.0% | |
| GAGGTTGGATAGGATAAGGA+AGG | + | chr5.2:80349095-80349114 | MS.gene81342:CDS | 45.0% | |
| GAGGTTGGATGAGAAAGAGA+GGG | + | chr5.2:80349242-80349261 | MS.gene81342:CDS | 45.0% | |
| GATAAGGAAGGAAGCTAGGA+AGG | + | chr5.2:80349107-80349126 | MS.gene81342:CDS | 45.0% | |
| GCAGAATGCCTCGCATAATT+CGG | - | chr5.2:80348799-80348818 | None:intergenic | 45.0% | |
| GCCATTTATCAGCTTCGTTG+AGG | - | chr5.2:80348624-80348643 | None:intergenic | 45.0% | |
| GTGAAAAATCGCATTGGGAG+AGG | + | chr5.2:80348752-80348771 | MS.gene81342:CDS | 45.0% | |
| GTTGATGTTCCTAACCCTAG+TGG | + | chr5.2:80348847-80348866 | MS.gene81342:CDS | 45.0% | |
| TACGAGGGAGATTCTTCATG+AGG | + | chr5.2:80349167-80349186 | MS.gene81342:CDS | 45.0% | |
| TATCAGCTTCGTTGAGGTCA+CGG | - | chr5.2:80348618-80348637 | None:intergenic | 45.0% | |
| TCATGAGGAAGAAGAGGATG+TGG | + | chr5.2:80349182-80349201 | MS.gene81342:CDS | 45.0% | |
| TGAAGATGGGATATTGGAGC+GGG | + | chr5.2:80349020-80349039 | MS.gene81342:CDS | 45.0% | |
| TGAGGAATGTATGAGACGTG+AGG | + | chr5.2:80349056-80349075 | MS.gene81342:CDS | 45.0% | |
| TGTCAGTGATGAGCTTATGG+AGG | + | chr5.2:80349353-80349372 | MS.gene81342:CDS | 45.0% | |
| TGTTCCTAACCCTAGTGGAA+GGG | + | chr5.2:80348852-80348871 | MS.gene81342:CDS | 45.0% | |
| TTTGAATCTCGGCGACTTTG+CGG | - | chr5.2:80348672-80348691 | None:intergenic | 45.0% | |
| ! | GGTGTTGCAGAAGAAGAAGA+CGG | + | chr5.2:80349314-80349333 | MS.gene81342:CDS | 45.0% |
| ATCTCCTTCTCATCCGGCAA+CGG | - | chr5.2:80349285-80349304 | None:intergenic | 50.0% | |
| CATCGTTGAGATCACGGAGA+CGG | - | chr5.2:80348714-80348733 | None:intergenic | 50.0% | |
| CGTCTCATACATTCCTCAGC+CGG | - | chr5.2:80349054-80349073 | None:intergenic | 50.0% | |
| GAAGAAATTGCCGGGGGTTA+GGG | + | chr5.2:80348903-80348922 | MS.gene81342:CDS | 50.0% | |
| GATGAAGGAGAGGGAGATGA+GGG | + | chr5.2:80349218-80349237 | MS.gene81342:CDS | 50.0% | |
| GGAATGTATGAGACGTGAGG+CGG | + | chr5.2:80349059-80349078 | MS.gene81342:CDS | 50.0% | |
| GGAGGTTGTTGAGGTTACTG+CGG | + | chr5.2:80349143-80349162 | MS.gene81342:CDS | 50.0% | |
| GGGAGAGGTTGGATAGGATA+AGG | + | chr5.2:80349091-80349110 | MS.gene81342:CDS | 50.0% | |
| GTCGCCGAGATTCAAAACGA+AGG | + | chr5.2:80348676-80348695 | MS.gene81342:CDS | 50.0% | |
| GTTCCTAACCCTAGTGGAAG+GGG | + | chr5.2:80348853-80348872 | MS.gene81342:CDS | 50.0% | |
| TCAAAAAGCTCCCTAACCCC+CGG | - | chr5.2:80348916-80348935 | None:intergenic | 50.0% | |
| TGAGGAAGAAGAGGATGTGG+TGG | + | chr5.2:80349185-80349204 | MS.gene81342:CDS | 50.0% | |
| TTCCTAACCCTAGTGGAAGG+GGG | + | chr5.2:80348854-80348873 | MS.gene81342:CDS | 50.0% | |
| TTCGTTGAGGTCACGGCATT+CGG | - | chr5.2:80348611-80348630 | None:intergenic | 50.0% | |
| TTGGAGGACCGAATTATGCG+AGG | + | chr5.2:80348788-80348807 | MS.gene81342:CDS | 50.0% | |
| ! | GGGCCGGGGTATAGATATTT+TGG | + | chr5.2:80348874-80348893 | MS.gene81342:CDS | 50.0% |
| AGCCGCCAGAGTTGAGGAAA+CGG | + | chr5.2:80348938-80348957 | MS.gene81342:CDS | 55.0% | |
| AGGAAGCTAGGAAGGCTGTG+AGG | + | chr5.2:80349115-80349134 | MS.gene81342:CDS | 55.0% | |
| AGGAGGAGAGGATGAAGGAG+AGG | + | chr5.2:80349208-80349227 | MS.gene81342:CDS | 55.0% | |
| AGGAGTGGGAGAGGTTGGAT+AGG | + | chr5.2:80349085-80349104 | MS.gene81342:CDS | 55.0% | |
| CGAAGAAATTGCCGGGGGTT+AGG | + | chr5.2:80348902-80348921 | MS.gene81342:CDS | 55.0% | |
| CGGCATTCGGAAGCGAGAAA+AGG | - | chr5.2:80348598-80348617 | None:intergenic | 55.0% | |
| CTAGGAAGGCTGTGAGGAGT+GGG | + | chr5.2:80349121-80349140 | MS.gene81342:CDS | 55.0% | |
| CTCCGTTTCCTCAACTCTGG+CGG | - | chr5.2:80348943-80348962 | None:intergenic | 55.0% | |
| GGAAGAAGAGGATGTGGTGG+AGG | + | chr5.2:80349188-80349207 | MS.gene81342:CDS | 55.0% | |
| GGAGGAGAGGATGAAGGAGA+GGG | + | chr5.2:80349209-80349228 | MS.gene81342:CDS | 55.0% | |
| GGAGGAGCAGACTGAAGCTA+AGG | + | chr5.2:80349371-80349390 | MS.gene81342:CDS | 55.0% | |
| GGATGAAGGAGAGGGAGATG+AGG | + | chr5.2:80349217-80349236 | MS.gene81342:CDS | 55.0% | |
| GTCCTCCGTTTCCTCAACTC+TGG | - | chr5.2:80348946-80348965 | None:intergenic | 55.0% | |
| TAGGAAGGCTGTGAGGAGTG+GGG | + | chr5.2:80349122-80349141 | MS.gene81342:CDS | 55.0% | |
| TATGAGACGTGAGGCGGTTG+AGG | + | chr5.2:80349065-80349084 | MS.gene81342:CDS | 55.0% | |
| TGAGGTTACTGCGGCTACGA+GGG | + | chr5.2:80349152-80349171 | MS.gene81342:CDS | 55.0% | |
| TGGTGCGGCGAAGAAATTGC+CGG | + | chr5.2:80348894-80348913 | MS.gene81342:CDS | 55.0% | |
| TTGAGAAGCCGCCAGAGTTG+AGG | + | chr5.2:80348932-80348951 | MS.gene81342:CDS | 55.0% | |
| TTGAGGTTACTGCGGCTACG+AGG | + | chr5.2:80349151-80349170 | MS.gene81342:CDS | 55.0% | |
| ! | AGAAGAGGATGTGGTGGAGG+AGG | + | chr5.2:80349191-80349210 | MS.gene81342:CDS | 55.0% |
| ! | TGTTGTGCATGTGCCGTTGC+CGG | + | chr5.2:80349269-80349288 | MS.gene81342:CDS | 55.0% |
| !! | TGGGATATTGGAGCGGGTTG+AGG | + | chr5.2:80349026-80349045 | MS.gene81342:CDS | 55.0% |
| ACGTGAGGCGGTTGAGGAGT+GGG | + | chr5.2:80349071-80349090 | MS.gene81342:CDS | 60.0% | |
| AGGAGAGGGAGATGAGGGAG+AGG | + | chr5.2:80349223-80349242 | MS.gene81342:CDS | 60.0% | |
| CGCCAGAGTTGAGGAAACGG+AGG | + | chr5.2:80348941-80348960 | MS.gene81342:CDS | 60.0% | |
| GAGGAGTGGGGAGGTTGTTG+AGG | + | chr5.2:80349134-80349153 | MS.gene81342:CDS | 60.0% | |
| GAGGGAGATGAGGGAGAGGT+TGG | + | chr5.2:80349227-80349246 | MS.gene81342:CDS | 60.0% | |
| GCTAGGAAGGCTGTGAGGAG+TGG | + | chr5.2:80349120-80349139 | MS.gene81342:CDS | 60.0% | |
| GGTGCGGCGAAGAAATTGCC+GGG | + | chr5.2:80348895-80348914 | MS.gene81342:CDS | 60.0% | |
| GGTGGAGGAGGAGAGGATGA+AGG | + | chr5.2:80349203-80349222 | MS.gene81342:CDS | 60.0% | |
| GGTTGAGGAGTGGGAGAGGT+TGG | + | chr5.2:80349080-80349099 | MS.gene81342:CDS | 60.0% | |
| GTGCGGCGAAGAAATTGCCG+GGG | + | chr5.2:80348896-80348915 | MS.gene81342:CDS | 60.0% | |
| TAACCCTAGTGGAAGGGGGC+CGG | + | chr5.2:80348858-80348877 | MS.gene81342:CDS | 60.0% | |
| TGCGGCGAAGAAATTGCCGG+GGG | + | chr5.2:80348897-80348916 | MS.gene81342:CDS | 60.0% | |
| ! | AGGATGTGGTGGAGGAGGAG+AGG | + | chr5.2:80349196-80349215 | MS.gene81342:CDS | 60.0% |
| ! | TGTGCCGTTGCCGGATGAGA+AGG | + | chr5.2:80349278-80349297 | MS.gene81342:CDS | 60.0% |
| !! | ATTGGAGCGGGTTGAGGCAC+CGG | + | chr5.2:80349032-80349051 | MS.gene81342:CDS | 60.0% |
| AACCCTAGTGGAAGGGGGCC+GGG | + | chr5.2:80348859-80348878 | MS.gene81342:CDS | 65.0% | |
| AGGCGGTTGAGGAGTGGGAG+AGG | + | chr5.2:80349076-80349095 | MS.gene81342:CDS | 65.0% | |
| GAAGGCTGTGAGGAGTGGGG+AGG | + | chr5.2:80349125-80349144 | MS.gene81342:CDS | 65.0% | |
| GACGTGAGGCGGTTGAGGAG+TGG | + | chr5.2:80349070-80349089 | MS.gene81342:CDS | 65.0% | |
| GGCCCCCTTCCACTAGGGTT+AGG | - | chr5.2:80348859-80348878 | None:intergenic | 65.0% | |
| ACCCCGGCCCCCTTCCACTA+GGG | - | chr5.2:80348864-80348883 | None:intergenic | 70.0% | |
| ACCCTAGTGGAAGGGGGCCG+GGG | + | chr5.2:80348860-80348879 | MS.gene81342:CDS | 70.0% | |
| TACCCCGGCCCCCTTCCACT+AGG | - | chr5.2:80348865-80348884 | None:intergenic | 70.0% | |
| !! | GCGGGTTGAGGCACCGGCTG+AGG | + | chr5.2:80349038-80349057 | MS.gene81342:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80348505 | 80349416 | 80348505 | ID=MS.gene81342 |
| chr5.2 | mRNA | 80348505 | 80349416 | 80348505 | ID=MS.gene81342.t1;Parent=MS.gene81342 |
| chr5.2 | exon | 80348505 | 80349416 | 80348505 | ID=MS.gene81342.t1.exon1;Parent=MS.gene81342.t1 |
| chr5.2 | CDS | 80348505 | 80349416 | 80348505 | ID=cds.MS.gene81342.t1;Parent=MS.gene81342.t1 |
| Gene Sequence |
| Protein sequence |
