AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81397.t1 MTR_5g094450 97.328 524 14 0 1 524 9 532 0.0 1063
MS.gene81397.t1 MTR_3g056110 66.543 541 157 8 1 524 9 542 0.0 711
MS.gene81397.t1 MTR_5g097480 58.011 543 197 8 5 524 10 544 0.0 612
MS.gene81397.t1 MTR_4g133660 54.298 477 202 5 53 523 76 542 9.57e-175 504
MS.gene81397.t1 MTR_2g082090 47.917 528 225 7 37 523 60 578 8.26e-165 479
MS.gene81397.t1 MTR_2g026250 56.136 383 163 3 143 524 218 596 5.57e-153 450
MS.gene81397.t1 MTR_3g089055 50.390 385 186 3 140 524 191 570 8.21e-137 408
MS.gene81397.t1 MTR_3g089055 50.390 385 186 3 140 524 186 565 1.05e-136 407
MS.gene81397.t1 MTR_1g029420 44.770 478 224 7 79 524 123 592 1.10e-135 405
MS.gene81397.t1 MTR_7g027190 36.410 390 220 4 150 524 297 673 8.36e-77 255
MS.gene81397.t1 MTR_8g442410 34.286 385 234 6 149 524 151 525 5.68e-68 228
MS.gene81397.t1 MTR_3g065980 35.696 395 211 10 150 524 169 540 1.87e-66 224
MS.gene81397.t1 MTR_4g064160 31.579 380 247 6 149 523 312 683 2.20e-60 211
MS.gene81397.t1 MTR_4g097080 30.789 380 250 5 151 524 131 503 6.30e-60 206
MS.gene81397.t1 MTR_2g097410 32.987 385 237 9 149 523 367 740 1.70e-59 209
MS.gene81397.t1 MTR_7g062120 30.203 394 261 7 135 524 357 740 3.54e-59 209
MS.gene81397.t1 MTR_7g074650 36.043 369 217 8 157 524 442 792 7.29e-59 209
MS.gene81397.t1 MTR_4g104020 30.928 388 242 7 150 524 146 520 9.23e-58 201
MS.gene81397.t1 MTR_4g064150 32.115 383 245 8 149 523 357 732 3.43e-57 203
MS.gene81397.t1 MTR_3g022830 28.401 419 244 6 154 524 26 436 6.88e-57 196
MS.gene81397.t1 MTR_7g057230 34.211 380 228 10 151 523 292 656 9.90e-56 198
MS.gene81397.t1 MTR_4g102790 32.658 395 230 10 147 523 285 661 2.77e-55 197
MS.gene81397.t1 MTR_4g064200 30.504 377 253 5 149 523 280 649 3.32e-55 196
MS.gene81397.t1 MTR_2g097390 30.890 382 245 9 149 523 271 640 7.15e-55 195
MS.gene81397.t1 MTR_4g064120 31.217 378 251 7 149 521 250 623 1.31e-54 194
MS.gene81397.t1 MTR_2g097310 30.159 378 253 5 149 523 268 637 1.51e-54 194
MS.gene81397.t1 MTR_4g064180 31.398 379 249 7 149 521 250 623 1.65e-54 194
MS.gene81397.t1 MTR_2g097350 30.909 385 241 11 149 523 270 639 2.10e-53 191
MS.gene81397.t1 MTR_6g047750 33.760 391 221 11 151 524 293 662 2.66e-53 191
MS.gene81397.t1 MTR_5g015490 30.729 384 247 7 153 524 114 490 2.14e-51 182
MS.gene81397.t1 MTR_2g097467 29.787 376 256 4 149 523 285 653 7.35e-51 184
MS.gene81397.t1 MTR_2g097473 30.769 377 251 6 149 523 285 653 6.22e-50 182
MS.gene81397.t1 MTR_4g077760 34.358 358 214 9 173 524 213 555 2.66e-49 178
MS.gene81397.t1 MTR_2g097463 30.423 378 251 6 149 523 286 654 1.42e-48 178
MS.gene81397.t1 MTR_1g096030 29.657 408 229 16 150 524 77 459 5.83e-46 167
MS.gene81397.t1 MTR_4g076020 32.432 370 220 9 157 524 88 429 7.98e-46 166
MS.gene81397.t1 MTR_2g089100 25.114 438 296 7 112 523 11 442 7.72e-43 159
MS.gene81397.t1 MTR_1g069725 30.170 411 259 13 118 523 75 462 4.37e-42 157
MS.gene81397.t1 MTR_2g097380 26.975 367 232 6 158 523 229 560 7.36e-42 158
MS.gene81397.t1 MTR_3g072710 28.718 390 255 9 150 523 117 499 2.70e-39 150
MS.gene81397.t1 MTR_2g099110 29.293 396 240 10 152 524 73 451 1.07e-38 147
MS.gene81397.t1 MTR_2g034250 27.366 391 256 9 150 524 207 585 3.05e-37 145
MS.gene81397.t1 MTR_5g058860 29.337 392 248 11 150 523 116 496 2.57e-34 135
MS.gene81397.t1 MTR_5g015950 24.201 438 266 9 139 523 21 445 1.29e-33 133
MS.gene81397.t1 MTR_3g053270 24.201 438 266 9 139 523 21 445 1.29e-33 133
MS.gene81397.t1 MTR_4g095500 24.940 417 265 8 150 523 56 467 1.50e-33 133
MS.gene81397.t1 MTR_2g034280 25.065 387 267 11 150 524 200 575 2.10e-31 128
MS.gene81397.t1 MTR_4g026485 27.056 377 247 10 154 524 270 624 2.91e-31 128
MS.gene81397.t1 MTR_2g034260 25.570 395 257 11 150 524 207 584 6.32e-31 127
MS.gene81397.t1 MTR_5g009080 28.972 214 144 3 150 363 53 258 3.69e-29 120
MS.gene81397.t1 MTR_5g009080 36.879 141 88 1 385 524 338 478 1.32e-23 104
MS.gene81397.t1 MTR_7g109580 26.098 387 258 11 149 524 185 554 7.55e-29 120
MS.gene81397.t1 MTR_4g076140 31.132 212 138 2 150 361 45 248 2.28e-28 118
MS.gene81397.t1 MTR_4g076140 38.298 141 86 1 385 524 329 469 9.40e-26 110
MS.gene81397.t1 MTR_0092s0100 25.201 373 260 7 154 524 376 731 2.50e-28 119
MS.gene81397.t1 MTR_0092s0100 25.201 373 260 7 154 524 373 728 2.75e-28 119
MS.gene81397.t1 MTR_8g093070 26.341 410 267 14 122 523 113 495 9.54e-26 110
MS.gene81397.t1 MTR_8g020840 24.069 403 254 14 151 524 169 548 1.54e-20 95.5
MS.gene81397.t1 MTR_1g086970 24.020 408 273 14 133 524 92 478 9.03e-20 92.4
MS.gene81397.t1 MTR_3g022580 32.727 110 74 0 415 524 74 183 1.87e-15 75.1
MS.gene81397.t1 MTR_8g077940 23.773 387 261 13 149 524 178 541 2.70e-15 79.0
MS.gene81397.t1 MTR_3g022005 36.559 93 59 0 432 524 33 125 1.47e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81397.t1 AT1G50600 56.309 531 204 8 5 524 88 601 0.0 565
MS.gene81397.t1 AT1G50600 56.309 531 204 8 5 524 84 597 0.0 564
MS.gene81397.t1 AT1G50600 56.309 531 204 8 5 524 13 526 0.0 564
MS.gene81397.t1 AT5G48150 55.728 515 199 6 11 524 4 490 0.0 560
MS.gene81397.t1 AT5G48150 55.728 515 199 6 11 524 4 490 0.0 560
MS.gene81397.t1 AT5G48150 55.728 515 199 6 11 524 4 490 0.0 560
MS.gene81397.t1 AT5G48150 55.728 515 199 6 11 524 4 490 0.0 560
MS.gene81397.t1 AT2G04890 61.979 384 135 3 141 524 41 413 4.60e-177 504
MS.gene81397.t1 AT4G17230 47.674 516 235 7 29 524 25 525 3.18e-154 451
MS.gene81397.t1 AT4G17230 47.674 516 235 7 29 524 25 525 3.18e-154 451
MS.gene81397.t1 AT1G21450 46.652 448 221 5 91 524 150 593 5.47e-138 412
MS.gene81397.t1 AT1G66350 36.148 379 214 11 150 524 152 506 5.62e-69 230
MS.gene81397.t1 AT3G03450 34.817 382 226 9 150 524 180 545 3.44e-65 221
MS.gene81397.t1 AT1G14920 35.263 380 222 11 150 524 169 529 4.79e-65 220
MS.gene81397.t1 AT1G07530 33.598 378 245 4 148 523 391 764 8.02e-65 224
MS.gene81397.t1 AT2G01570 36.220 381 217 12 150 524 221 581 2.07e-64 220
MS.gene81397.t1 AT5G17490 33.943 383 222 9 150 524 157 516 7.98e-64 217
MS.gene81397.t1 AT2G29060 34.031 382 238 6 149 523 280 654 1.27e-60 211
MS.gene81397.t1 AT2G29060 34.031 382 238 6 149 523 317 691 1.86e-60 211
MS.gene81397.t1 AT5G52510 33.842 393 223 9 151 524 266 640 1.28e-59 208
MS.gene81397.t1 AT3G54220 36.043 369 218 8 157 523 297 649 8.27e-59 206
MS.gene81397.t1 AT5G41920 35.156 384 217 13 150 524 40 400 1.14e-55 192
MS.gene81397.t1 AT1G07520 28.442 443 292 10 100 523 92 528 1.85e-54 192
MS.gene81397.t1 AT1G07520 28.442 443 292 10 100 523 92 528 1.85e-54 192
MS.gene81397.t1 AT3G46600 29.921 381 251 4 150 524 1 371 2.06e-54 188
MS.gene81397.t1 AT3G46600 30.105 382 251 4 149 524 208 579 6.87e-54 191
MS.gene81397.t1 AT3G46600 30.105 382 251 4 149 524 176 547 7.32e-54 191
MS.gene81397.t1 AT1G07520 28.442 443 292 10 100 523 256 692 1.02e-53 193
MS.gene81397.t1 AT1G07520 28.442 443 292 10 100 523 257 693 1.11e-53 193
MS.gene81397.t1 AT5G59450 29.211 380 261 5 149 524 223 598 1.44e-53 191
MS.gene81397.t1 AT5G66770 33.333 381 235 8 150 524 217 584 8.25e-53 189
MS.gene81397.t1 AT2G29065 30.366 382 257 5 149 523 248 627 2.54e-52 188
MS.gene81397.t1 AT2G37650 29.443 377 259 5 149 524 331 701 7.37e-51 185
MS.gene81397.t1 AT2G37650 29.443 377 259 5 149 524 343 713 8.46e-51 185
MS.gene81397.t1 AT3G50650 32.041 387 236 8 149 524 172 542 1.56e-50 181
MS.gene81397.t1 AT1G55580 30.361 415 239 9 150 524 41 445 6.06e-50 178
MS.gene81397.t1 AT1G63100 31.026 390 245 6 149 523 248 628 2.10e-49 180
MS.gene81397.t1 AT1G63100 31.026 390 245 6 149 523 273 653 3.48e-49 180
MS.gene81397.t1 AT4G37650 28.934 394 248 11 153 524 146 529 3.59e-47 172
MS.gene81397.t1 AT4G08250 28.990 307 201 6 225 523 179 476 1.41e-34 136
MS.gene81397.t1 AT3G49950 23.896 385 278 6 150 523 27 407 4.88e-33 130
MS.gene81397.t1 AT1G50420 31.111 225 148 2 138 361 41 259 1.69e-30 124
MS.gene81397.t1 AT1G50420 38.028 142 85 2 385 524 339 479 9.67e-26 110
MS.gene81397.t1 AT3G60630 27.119 354 221 10 186 524 291 622 5.18e-24 106
MS.gene81397.t1 AT2G45160 25.594 379 227 14 169 524 293 639 2.86e-23 104
MS.gene81397.t1 AT4G36710 26.478 389 249 14 149 524 121 485 1.45e-21 98.2
MS.gene81397.t1 AT4G00150 24.557 395 233 15 150 524 205 554 2.12e-20 95.1
MS.gene81397.t1 AT3G13840 24.041 391 254 12 151 524 146 510 2.90e-20 94.4
MS.gene81397.t1 AT5G67411 30.348 201 126 5 272 461 1 198 4.84e-15 74.3

Find 95 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAAATGGTTTCGGTTTC+AGG 0.082618 5.2:-79725995 MS.gene81397:CDS
ATTTGTCCTTACCTCAAATT+TGG 0.139278 5.2:-79725818 MS.gene81397:CDS
TCTTTACTAGTAGCAGTTAT+AGG 0.224168 5.2:+79725872 None:intergenic
GCATTTGAGTTTCATGCTAT+AGG 0.322420 5.2:-79725548 MS.gene81397:CDS
CATTTGAGTTTCATGCTATA+GGG 0.329203 5.2:-79725547 MS.gene81397:CDS
CAATTAATATAAGAGCTTAA+TGG 0.338228 5.2:+79725089 None:intergenic
AACTTCACTTTCATCTTTCA+AGG 0.343048 5.2:+79725763 None:intergenic
AGCAATATCAGAAAATGATA+TGG 0.350309 5.2:-79726047 MS.gene81397:CDS
ATCTGATCCACTCTTGTTAG+AGG 0.352080 5.2:-79726143 MS.gene81397:CDS
TATAGGCTCTTTGCATTTCA+AGG 0.357284 5.2:+79725889 None:intergenic
ATATAAGAGCTTAATGGATA+TGG 0.358531 5.2:+79725095 None:intergenic
AATGTCAGAGTTGTCGAAAA+TGG 0.368522 5.2:-79726008 MS.gene81397:CDS
CTGATCTTCGGCGGTCCTCC+AGG 0.371989 5.2:+79725671 None:intergenic
AAAGATGGTGCTCTTTATCT+TGG 0.376459 5.2:-79725014 MS.gene81397:CDS
ACATGTATGCTCCTAACCTT+TGG 0.380505 5.2:+79725963 None:intergenic
GGAGGAGGACTTGTTATTGT+TGG 0.385168 5.2:-79725608 MS.gene81397:CDS
CAAGCACTTGCTGGAAAACC+TGG 0.390705 5.2:-79725689 MS.gene81397:CDS
CTGACATGTATCCAAATTTG+AGG 0.406987 5.2:+79725807 None:intergenic
GTTGCAAGAATAGCTTCTTC+AGG 0.410550 5.2:-79725929 MS.gene81397:CDS
GACTTGTTATTGTTGGAGAA+AGG 0.425126 5.2:-79725601 MS.gene81397:CDS
TATGCTCCTAACCTTTGGAT+TGG 0.428646 5.2:+79725968 None:intergenic
TCGACGAAACGTGCAAAGAA+TGG 0.431715 5.2:+79725317 None:intergenic
AGTCTAATCCAAGCACTTGC+TGG 0.434105 5.2:-79725698 MS.gene81397:CDS
TGTTCTAAAGCTTGAAATGA+AGG 0.434140 5.2:+79726400 None:intergenic
GGCAAAATGTTTGTCTCCTA+AGG 0.436222 5.2:-79725381 MS.gene81397:CDS
TCTTGTGCCACAAGTCATCT+TGG 0.436674 5.2:+79726251 None:intergenic
GACTATTGTTAGAAGATTCA+AGG 0.438602 5.2:+79726374 None:intergenic
ATCCTTTCTCTGTGCTCCCT+TGG 0.438790 5.2:+79725245 None:intergenic
ATGGTGCTCTTTATCTTGGT+TGG 0.450648 5.2:-79725010 MS.gene81397:CDS
AGATCATGTTTCACAATGGC+TGG 0.452840 5.2:-79725125 MS.gene81397:CDS
CTTGTAGAGTATAATGTCCT+TGG 0.456322 5.2:+79725039 None:intergenic
AAACCGGTTATTCTGATCTT+CGG 0.458599 5.2:+79725659 None:intergenic
CTCTTATTACCTCTAGTGCT+TGG 0.460840 5.2:-79724977 MS.gene81397:CDS
GGAAATCCAATCCAAAGGTT+AGG 0.465445 5.2:-79725974 MS.gene81397:CDS
AATTTCTTTCAAATCCCCTC+TGG 0.466590 5.2:+79726087 None:intergenic
AGAGTTGTCGAAAATGGTTT+CGG 0.470075 5.2:-79726002 MS.gene81397:CDS
TTATTACCTCTAGTGCTTGG+AGG 0.473858 5.2:-79724974 MS.gene81397:CDS
CTTCACCACGACGAAGTTCA+AGG 0.477100 5.2:+79725495 None:intergenic
TCGCGATCGATTAGTGAGAT+TGG 0.480871 5.2:-79725402 MS.gene81397:CDS
CCGCCGAAGATCAGAATAAC+CGG 0.481757 5.2:-79725662 MS.gene81397:CDS
TGCCAAGGGAGCACAGAGAA+AGG 0.488020 5.2:-79725247 MS.gene81397:CDS
TATGAGTCTAGATCTTGTAT+AGG 0.488577 5.2:+79726490 None:intergenic
TCAGCTTATGCTAGGGGAGG+AGG 0.490751 5.2:-79725623 MS.gene81397:CDS
CAATTGATGTTGCTTTGCCA+AGG 0.496515 5.2:-79725262 MS.gene81397:CDS
TCAACAAGAGTCACTACCTT+AGG 0.498490 5.2:+79725365 None:intergenic
GAAATGAAGGGTAGGTTGAA+TGG 0.500307 5.2:+79726413 None:intergenic
TTTGGATACATGTCAGCAAA+TGG 0.500743 5.2:-79725800 MS.gene81397:CDS
TGAAGTTGAGTCATCAAAAC+CGG 0.501919 5.2:+79725643 None:intergenic
TAATGTGGAACAGCATTGCT+TGG 0.522983 5.2:-79725222 MS.gene81397:CDS
TGAATCTTCTAACAATAGTC+CGG 0.523182 5.2:-79726371 MS.gene81397:CDS
AACTACTCATCTTCTGATAA+CGG 0.524904 5.2:-79726439 MS.gene81397:CDS
ACTCAACTTCAGCTTATGCT+AGG 0.530700 5.2:-79725631 MS.gene81397:CDS
CTCAACTTCAGCTTATGCTA+GGG 0.532037 5.2:-79725630 MS.gene81397:CDS
GAGCTTGAAAATGCTATGCT+AGG 0.532196 5.2:-79726223 MS.gene81397:CDS
GCACATCTTCATCCGGTACA+TGG 0.535079 5.2:+79725441 None:intergenic
CCACCATGCACATCTTCATC+CGG 0.542699 5.2:+79725434 None:intergenic
CAAGCACTAGAGGTAATAAG+AGG 0.548387 5.2:+79724978 None:intergenic
CATGATGCTGCACCATGTAC+CGG 0.549165 5.2:-79725453 MS.gene81397:CDS
ATGTATCCAAATTTGAGGTA+AGG 0.552106 5.2:+79725812 None:intergenic
CGGTACATGGTGCAGCATCA+TGG 0.552726 5.2:+79725454 None:intergenic
TTTGACTGTAGCTTCGAGAC+CGG 0.552976 5.2:+79726352 None:intergenic
ATTTGAGTTTCATGCTATAG+GGG 0.555615 5.2:-79725546 MS.gene81397:CDS
ACTATTGTTAGAAGATTCAA+GGG 0.562160 5.2:+79726375 None:intergenic
GTCACGAGGTTCTGAAGAAG+TGG 0.562877 5.2:-79725148 MS.gene81397:CDS
TCTTCAAGTCTCACCTCAGA+AGG 0.563852 5.2:+79725518 None:intergenic
ATGATATGGAAACAGCTGAA+TGG 0.565722 5.2:-79726033 MS.gene81397:CDS
GTTCTAAAGCTTGAAATGAA+GGG 0.567885 5.2:+79726401 None:intergenic
AATTGATGTTGCTTTGCCAA+GGG 0.571262 5.2:-79725261 MS.gene81397:CDS
TGCAAAGAATGGAAGCTCGT+TGG 0.585649 5.2:+79725328 None:intergenic
TAAAGCTTGAAATGAAGGGT+AGG 0.588089 5.2:+79726405 None:intergenic
GTCAATTTAGTAGCGTGTGA+AGG 0.591391 5.2:-79725188 MS.gene81397:CDS
AGATTAATCAGGGAATTCAG+TGG 0.595212 5.2:-79725724 MS.gene81397:CDS
TGATTGAGATGATATCCAGA+GGG 0.598119 5.2:-79726102 MS.gene81397:CDS
GCATTGCTTGGCTCGCGAAG+TGG 0.604747 5.2:-79725210 MS.gene81397:CDS
TATACTCTACAAGAGAAAGA+TGG 0.606593 5.2:-79725029 MS.gene81397:CDS
TTCTCTGCCTCTAACAAGAG+TGG 0.609260 5.2:+79726136 None:intergenic
TCGTCGTGGTGAAGCTATTG+CGG 0.619071 5.2:-79725486 MS.gene81397:CDS
TTTCAGGAAATCCAATCCAA+AGG 0.621360 5.2:-79725979 MS.gene81397:CDS
GTATCACCTCCAAGCACTAG+AGG 0.626501 5.2:+79724968 None:intergenic
CACATAACCAAGATGACTTG+TGG 0.627441 5.2:-79726258 MS.gene81397:CDS
GCACAGAGAAAGGATTAATG+TGG 0.636528 5.2:-79725237 MS.gene81397:CDS
AAGGTTAGGAGCATACATGT+TGG 0.640121 5.2:-79725960 MS.gene81397:CDS
TATAGGGGCTAGTCCTTCTG+AGG 0.643175 5.2:-79725531 MS.gene81397:CDS
CCGGTTATTCTGATCTTCGG+CGG 0.646295 5.2:+79725662 None:intergenic
ACTTCAGCTTATGCTAGGGG+AGG 0.652120 5.2:-79725626 MS.gene81397:CDS
TCAACTTCAGCTTATGCTAG+GGG 0.673617 5.2:-79725629 MS.gene81397:CDS
AGAGAGAGTTGAACGTCACG+AGG 0.678622 5.2:-79725162 MS.gene81397:CDS
ATGATTGAGATGATATCCAG+AGG 0.679838 5.2:-79726103 MS.gene81397:CDS
GAAGACCTTGAACTTCGTCG+TGG 0.689434 5.2:-79725500 MS.gene81397:CDS
AATCTTCTAGAAAATTACCA+AGG 0.696750 5.2:-79725056 MS.gene81397:CDS
GTGGAGATCATGTTTCACAA+TGG 0.702263 5.2:-79725129 MS.gene81397:CDS
GCACTTGCTGGAAAACCTGG+AGG 0.713946 5.2:-79725686 MS.gene81397:CDS
GTACCGGATGAAGATGTGCA+TGG 0.723566 5.2:-79725437 MS.gene81397:CDS
GATTGAGATGATATCCAGAG+GGG 0.733440 5.2:-79726101 MS.gene81397:CDS
CCGGATGAAGATGTGCATGG+TGG 0.766036 5.2:-79725434 MS.gene81397:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTAATATAAGAGCTTAA+TGG + chr5.2:79726408-79726427 None:intergenic 20.0%
!!! AATTGATTTTCAGATTAATC+AGG - chr5.2:79725759-79725778 MS.gene81397:CDS 20.0%
!!! ATTGATTTTCAGATTAATCA+GGG - chr5.2:79725760-79725779 MS.gene81397:CDS 20.0%
! ACTATTGTTAGAAGATTCAA+GGG + chr5.2:79725122-79725141 None:intergenic 25.0%
! AGCAATATCAGAAAATGATA+TGG - chr5.2:79725447-79725466 MS.gene81397:CDS 25.0%
!! AATCTTCTAGAAAATTACCA+AGG - chr5.2:79726438-79726457 MS.gene81397:CDS 25.0%
!! ATATAAGAGCTTAATGGATA+TGG + chr5.2:79726402-79726421 None:intergenic 25.0%
AACTACTCATCTTCTGATAA+CGG - chr5.2:79725055-79725074 MS.gene81397:CDS 30.0%
AACTTCACTTTCATCTTTCA+AGG + chr5.2:79725734-79725753 None:intergenic 30.0%
ATTTGTCCTTACCTCAAATT+TGG - chr5.2:79725676-79725695 MS.gene81397:CDS 30.0%
GACTATTGTTAGAAGATTCA+AGG + chr5.2:79725123-79725142 None:intergenic 30.0%
TATACTCTACAAGAGAAAGA+TGG - chr5.2:79726465-79726484 MS.gene81397:CDS 30.0%
TATGAGTCTAGATCTTGTAT+AGG + chr5.2:79725007-79725026 None:intergenic 30.0%
TCTTTACTAGTAGCAGTTAT+AGG + chr5.2:79725625-79725644 None:intergenic 30.0%
TGAATCTTCTAACAATAGTC+CGG - chr5.2:79725123-79725142 MS.gene81397:CDS 30.0%
! ATGTATCCAAATTTGAGGTA+AGG + chr5.2:79725685-79725704 None:intergenic 30.0%
! ATTTGAGTTTCATGCTATAG+GGG - chr5.2:79725948-79725967 MS.gene81397:CDS 30.0%
! CATTTGAGTTTCATGCTATA+GGG - chr5.2:79725947-79725966 MS.gene81397:CDS 30.0%
!! GTTCTAAAGCTTGAAATGAA+GGG + chr5.2:79725096-79725115 None:intergenic 30.0%
!! TGTTCTAAAGCTTGAAATGA+AGG + chr5.2:79725097-79725116 None:intergenic 30.0%
!! TTTCGAGATTCTCATTTTTC+AGG + chr5.2:79725036-79725055 None:intergenic 30.0%
AAACCGGTTATTCTGATCTT+CGG + chr5.2:79725838-79725857 None:intergenic 35.0%
AAAGATGGTGCTCTTTATCT+TGG - chr5.2:79726480-79726499 MS.gene81397:CDS 35.0%
AATGTCAGAGTTGTCGAAAA+TGG - chr5.2:79725486-79725505 MS.gene81397:CDS 35.0%
AATTTCTTTCAAATCCCCTC+TGG + chr5.2:79725410-79725429 None:intergenic 35.0%
AGAGTTGTCGAAAATGGTTT+CGG - chr5.2:79725492-79725511 MS.gene81397:CDS 35.0%
AGATTAATCAGGGAATTCAG+TGG - chr5.2:79725770-79725789 MS.gene81397:CDS 35.0%
ATGATATGGAAACAGCTGAA+TGG - chr5.2:79725461-79725480 MS.gene81397:CDS 35.0%
ATGATTGAGATGATATCCAG+AGG - chr5.2:79725391-79725410 MS.gene81397:CDS 35.0%
CTGACATGTATCCAAATTTG+AGG + chr5.2:79725690-79725709 None:intergenic 35.0%
CTTGTAGAGTATAATGTCCT+TGG + chr5.2:79726458-79726477 None:intergenic 35.0%
TAAAGCTTGAAATGAAGGGT+AGG + chr5.2:79725092-79725111 None:intergenic 35.0%
TATAGGCTCTTTGCATTTCA+AGG + chr5.2:79725608-79725627 None:intergenic 35.0%
TGAAGTTGAGTCATCAAAAC+CGG + chr5.2:79725854-79725873 None:intergenic 35.0%
TGATTGAGATGATATCCAGA+GGG - chr5.2:79725392-79725411 MS.gene81397:CDS 35.0%
TTTCAGGAAATCCAATCCAA+AGG - chr5.2:79725515-79725534 MS.gene81397:CDS 35.0%
TTTGGATACATGTCAGCAAA+TGG - chr5.2:79725694-79725713 MS.gene81397:CDS 35.0%
! GCATTTGAGTTTCATGCTAT+AGG - chr5.2:79725946-79725965 MS.gene81397:CDS 35.0%
!! AATTGATGTTGCTTTGCCAA+GGG - chr5.2:79726233-79726252 MS.gene81397:CDS 35.0%
!! GACTTGTTATTGTTGGAGAA+AGG - chr5.2:79725893-79725912 MS.gene81397:CDS 35.0%
ACATGTATGCTCCTAACCTT+TGG + chr5.2:79725534-79725553 None:intergenic 40.0%
ACTCAACTTCAGCTTATGCT+AGG - chr5.2:79725863-79725882 MS.gene81397:CDS 40.0%
AGATCATGTTTCACAATGGC+TGG - chr5.2:79726369-79726388 MS.gene81397:CDS 40.0%
ATCTGATCCACTCTTGTTAG+AGG - chr5.2:79725351-79725370 MS.gene81397:CDS 40.0%
ATGGTGCTCTTTATCTTGGT+TGG - chr5.2:79726484-79726503 MS.gene81397:CDS 40.0%
CAAGCACTAGAGGTAATAAG+AGG + chr5.2:79726519-79726538 None:intergenic 40.0%
CACATAACCAAGATGACTTG+TGG - chr5.2:79725236-79725255 MS.gene81397:CDS 40.0%
CTCAACTTCAGCTTATGCTA+GGG - chr5.2:79725864-79725883 MS.gene81397:CDS 40.0%
CTCTTATTACCTCTAGTGCT+TGG - chr5.2:79726517-79726536 MS.gene81397:CDS 40.0%
GAGCTTGAAAATGCTATGCT+AGG - chr5.2:79725271-79725290 MS.gene81397:CDS 40.0%
GATTGAGATGATATCCAGAG+GGG - chr5.2:79725393-79725412 MS.gene81397:CDS 40.0%
GCACAGAGAAAGGATTAATG+TGG - chr5.2:79726257-79726276 MS.gene81397:CDS 40.0%
GGAAATCCAATCCAAAGGTT+AGG - chr5.2:79725520-79725539 MS.gene81397:CDS 40.0%
GGCAAAATGTTTGTCTCCTA+AGG - chr5.2:79726113-79726132 MS.gene81397:CDS 40.0%
GTCAATTTAGTAGCGTGTGA+AGG - chr5.2:79726306-79726325 MS.gene81397:CDS 40.0%
GTGGAGATCATGTTTCACAA+TGG - chr5.2:79726365-79726384 MS.gene81397:CDS 40.0%
GTTGCAAGAATAGCTTCTTC+AGG - chr5.2:79725565-79725584 MS.gene81397:CDS 40.0%
TAATGTGGAACAGCATTGCT+TGG - chr5.2:79726272-79726291 MS.gene81397:CDS 40.0%
TATGCTCCTAACCTTTGGAT+TGG + chr5.2:79725529-79725548 None:intergenic 40.0%
TCAACAAGAGTCACTACCTT+AGG + chr5.2:79726132-79726151 None:intergenic 40.0%
TCAACTTCAGCTTATGCTAG+GGG - chr5.2:79725865-79725884 MS.gene81397:CDS 40.0%
TCGAAAATGGTTTCGGTTTC+AGG - chr5.2:79725499-79725518 MS.gene81397:CDS 40.0%
TTATTACCTCTAGTGCTTGG+AGG - chr5.2:79726520-79726539 MS.gene81397:CDS 40.0%
! AAGGTTAGGAGCATACATGT+TGG - chr5.2:79725534-79725553 MS.gene81397:CDS 40.0%
! GAAATGAAGGGTAGGTTGAA+TGG + chr5.2:79725084-79725103 None:intergenic 40.0%
!! CAATTGATGTTGCTTTGCCA+AGG - chr5.2:79726232-79726251 MS.gene81397:CDS 40.0%
AGTCTAATCCAAGCACTTGC+TGG - chr5.2:79725796-79725815 MS.gene81397:CDS 45.0%
TCGACGAAACGTGCAAAGAA+TGG + chr5.2:79726180-79726199 None:intergenic 45.0%
TCGCGATCGATTAGTGAGAT+TGG - chr5.2:79726092-79726111 MS.gene81397:CDS 45.0%
TCTTCAAGTCTCACCTCAGA+AGG + chr5.2:79725979-79725998 None:intergenic 45.0%
TCTTGTGCCACAAGTCATCT+TGG + chr5.2:79725246-79725265 None:intergenic 45.0%
TGCAAAGAATGGAAGCTCGT+TGG + chr5.2:79726169-79726188 None:intergenic 45.0%
TTCTCTGCCTCTAACAAGAG+TGG + chr5.2:79725361-79725380 None:intergenic 45.0%
TTTGACTGTAGCTTCGAGAC+CGG + chr5.2:79725145-79725164 None:intergenic 45.0%
!! GGAGGAGGACTTGTTATTGT+TGG - chr5.2:79725886-79725905 MS.gene81397:CDS 45.0%
ACTTCAGCTTATGCTAGGGG+AGG - chr5.2:79725868-79725887 MS.gene81397:CDS 50.0%
AGAGAGAGTTGAACGTCACG+AGG - chr5.2:79726332-79726351 MS.gene81397:CDS 50.0%
ATCCTTTCTCTGTGCTCCCT+TGG + chr5.2:79726252-79726271 None:intergenic 50.0%
CATGATGCTGCACCATGTAC+CGG - chr5.2:79726041-79726060 MS.gene81397:CDS 50.0%
CCACCATGCACATCTTCATC+CGG + chr5.2:79726063-79726082 None:intergenic 50.0%
CCGCCGAAGATCAGAATAAC+CGG - chr5.2:79725832-79725851 MS.gene81397:CDS 50.0%
CCGGTTATTCTGATCTTCGG+CGG + chr5.2:79725835-79725854 None:intergenic 50.0%
CTTCACCACGACGAAGTTCA+AGG + chr5.2:79726002-79726021 None:intergenic 50.0%
GAAGACCTTGAACTTCGTCG+TGG - chr5.2:79725994-79726013 MS.gene81397:CDS 50.0%
GCACATCTTCATCCGGTACA+TGG + chr5.2:79726056-79726075 None:intergenic 50.0%
GTACCGGATGAAGATGTGCA+TGG - chr5.2:79726057-79726076 MS.gene81397:CDS 50.0%
TCGTCGTGGTGAAGCTATTG+CGG - chr5.2:79726008-79726027 MS.gene81397:CDS 50.0%
! CAAGCACTTGCTGGAAAACC+TGG - chr5.2:79725805-79725824 MS.gene81397:CDS 50.0%
! CAGGTTTTCCAGCAAGTGCT+TGG + chr5.2:79725807-79725826 None:intergenic 50.0%
!! GTCACGAGGTTCTGAAGAAG+TGG - chr5.2:79726346-79726365 MS.gene81397:CDS 50.0%
!! TATAGGGGCTAGTCCTTCTG+AGG - chr5.2:79725963-79725982 MS.gene81397:CDS 50.0%
CCGGATGAAGATGTGCATGG+TGG - chr5.2:79726060-79726079 MS.gene81397:CDS 55.0%
CGGTACATGGTGCAGCATCA+TGG + chr5.2:79726043-79726062 None:intergenic 55.0%
TCAGCTTATGCTAGGGGAGG+AGG - chr5.2:79725871-79725890 MS.gene81397:CDS 55.0%
! GCACTTGCTGGAAAACCTGG+AGG - chr5.2:79725808-79725827 MS.gene81397:CDS 55.0%
! TGCCAAGGGAGCACAGAGAA+AGG - chr5.2:79726247-79726266 MS.gene81397:CDS 55.0%
! GCATTGCTTGGCTCGCGAAG+TGG - chr5.2:79726284-79726303 MS.gene81397:CDS 60.0%
CTGATCTTCGGCGGTCCTCC+AGG + chr5.2:79725826-79725845 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 79724971 79726545 79724971 ID=MS.gene81397
chr5.2 mRNA 79724971 79726545 79724971 ID=MS.gene81397.t1;Parent=MS.gene81397
chr5.2 exon 79724971 79726545 79724971 ID=MS.gene81397.t1.exon1;Parent=MS.gene81397.t1
chr5.2 CDS 79724971 79726545 79724971 ID=cds.MS.gene81397.t1;Parent=MS.gene81397.t1
Gene Sequence

>MS.gene81397

ATGTCATATGATTCTAGCATGTTCAGCATTGAGCCTATACAAGATCTAGACTCATATTGCTTCCTGAAAAATGAGAATCTCGAAAACTACTCATCTTCTGATAACGGTAGCCATTCAACCTACCCTTCATTTCAAGCTTTAGAACAAACCCTTGAATCTTCTAACAATAGTCCGGTCTCGAAGCTACAGTCAAAATCTTACACGTTCACGTCACGAAACTCTCTTGAAATTATCAATGATTCTTTAGAGAATGAATCTTGCTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTTGAAAATGCTATGCTAGGACATGATGCTGCAGATATGCTAGACATTTATAATGATGCTGTAATAATTCAACAAGAATCTGATCCACTCTTGTTAGAGGCAGAGAAGTGTAACAAAATGATTGAGATGATATCCAGAGGGGATTTGAAAGAAATTCTTTTTACATGTGCAAAAGCAATATCAGAAAATGATATGGAAACAGCTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGAAATCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATATACAAATCCTTGAAATGCAAAGAGCCTATAACTGCTACTAGTAAAGAACTACTCTCACACATGCATGTGCTTTATGAAATTTGTCCTTACCTCAAATTTGGATACATGTCAGCAAATGGTGTAATTGCTGAAGCCTTGAAAGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGATGAGTCTAATCCAAGCACTTGCTGGAAAACCTGGAGGACCGCCGAAGATCAGAATAACCGGTTTTGATGACTCAACTTCAGCTTATGCTAGGGGAGGAGGACTTGTTATTGTTGGAGAAAGGTTGTCAAAACTTGCACAGTCATATAATGTAGCATTTGAGTTTCATGCTATAGGGGCTAGTCCTTCTGAGGTGAGACTTGAAGACCTTGAACTTCGTCGTGGTGAAGCTATTGCGGTGAATTTTGCCATGATGCTGCACCATGTACCGGATGAAGATGTGCATGGTGGTAAGAATCATCGCGATCGATTAGTGAGATTGGCAAAATGTTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAGCTTCCATTCTTTGCACGTTTCGTCGAGACAATGAACTACTACTTCGCAGTTTTTGAATCAATTGATGTTGCTTTGCCAAGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGCTTGGCTCGCGAAGTGGTCAATTTAGTAGCGTGTGAAGGCGCAGAGAGAGTTGAACGTCACGAGGTTCTGAAGAAGTGGAGATCATGTTTCACAATGGCTGGATTCACACCATATCCATTAAGCTCTTATATTAATTGTTCAATACAAAATCTTCTAGAAAATTACCAAGGACATTATACTCTACAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAACCTCTTATTACCTCTAGTGCTTGGAGGTGA
Protein sequence

>MS.gene81397.t1

MSYDSSMFSIEPIQDLDSYCFLKNENLENYSSSDNGSHSTYPSFQALEQTLESSNNSPVSKLQSKSYTFTSRNSLEIINDSLENESCLTHNQDDLWHKIRELENAMLGHDAADMLDIYNDAVIIQQESDPLLLEAEKCNKMIEMISRGDLKEILFTCAKAISENDMETAEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPITATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWMSLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLVIVGERLSKLAQSYNVAFEFHAIGASPSEVRLEDLELRRGEAIAVNFAMMLHHVPDEDVHGGKNHRDRLVRLAKCLSPKVVTLVEQESNTNELPFFARFVETMNYYFAVFESIDVALPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWRSCFTMAGFTPYPLSSYINCSIQNLLENYQGHYTLQEKDGALYLGWMNQPLITSSAWR