AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84585


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84585.t1 MTR_7g081420 90.753 292 27 0 12 303 496 787 0.0 550
MS.gene84585.t1 MTR_7g081500 90.753 292 27 0 12 303 494 785 0.0 532
MS.gene84585.t1 MTR_7g081380 84.642 293 44 1 12 303 517 809 5.22e-176 507
MS.gene84585.t1 MTR_7g081750 83.219 292 49 0 12 303 509 800 1.48e-174 503
MS.gene84585.t1 MTR_7g081580 84.321 287 45 0 17 303 500 786 1.11e-173 501
MS.gene84585.t1 MTR_7g481600 84.321 287 45 0 17 303 500 786 1.15e-165 481
MS.gene84585.t1 MTR_5g085690 62.081 298 106 5 7 300 494 788 5.09e-119 360
MS.gene84585.t1 MTR_5g096750 56.679 277 105 5 30 303 503 767 5.11e-100 310
MS.gene84585.t1 MTR_7g081660 82.967 182 31 0 122 303 374 555 1.56e-98 301
MS.gene84585.t1 MTR_4g103400 53.929 280 123 6 19 295 494 770 1.48e-93 293
MS.gene84585.t1 MTR_3g082200 51.761 284 132 5 19 301 353 632 6.83e-93 288
MS.gene84585.t1 MTR_3g082200 51.761 284 132 5 19 301 368 647 7.31e-93 288
MS.gene84585.t1 MTR_3g061110 52.797 286 129 6 19 302 473 754 2.64e-92 290
MS.gene84585.t1 MTR_3g082200 51.761 284 132 5 19 301 491 770 4.75e-92 289
MS.gene84585.t1 MTR_7g098070 55.396 278 116 7 24 300 491 761 1.43e-90 285
MS.gene84585.t1 MTR_4g103495 51.557 289 134 6 16 301 339 624 1.84e-90 281
MS.gene84585.t1 MTR_4g134320 55.678 273 113 7 29 300 500 765 2.12e-90 285
MS.gene84585.t1 MTR_4g103430 51.724 290 124 8 19 300 487 768 4.96e-89 281
MS.gene84585.t1 MTR_5g055920 50.350 286 136 6 19 301 385 667 4.46e-88 276
MS.gene84585.t1 MTR_4g103490 50.350 286 136 6 19 301 502 784 1.88e-86 275
MS.gene84585.t1 MTR_4g103480 49.650 286 138 6 19 301 505 787 6.07e-86 274
MS.gene84585.t1 MTR_4g103450 49.301 286 139 6 19 301 462 744 3.54e-84 268
MS.gene84585.t1 MTR_4g103495 54.237 236 104 4 16 250 488 720 5.38e-76 247
MS.gene84585.t1 MTR_4g095360 46.953 279 138 6 29 300 479 754 7.73e-76 246
MS.gene84585.t1 MTR_5g016120 46.099 282 142 6 29 303 485 763 1.08e-74 243
MS.gene84585.t1 MTR_5g025010 48.084 287 133 8 18 301 445 718 5.36e-74 241
MS.gene84585.t1 MTR_5g025010 48.084 287 133 8 18 301 477 750 7.77e-74 241
MS.gene84585.t1 MTR_8g072440 45.455 286 140 4 18 301 440 711 4.37e-73 238
MS.gene84585.t1 MTR_0047s0120 46.099 282 142 6 29 303 481 759 6.51e-73 239
MS.gene84585.t1 MTR_8g072440 45.455 286 140 4 18 301 482 753 7.65e-73 238
MS.gene84585.t1 MTR_8g024380 44.000 300 155 7 10 300 463 758 1.27e-72 238
MS.gene84585.t1 MTR_3g102810 44.558 294 147 6 18 298 462 752 4.47e-71 234
MS.gene84585.t1 MTR_2g049200 43.046 302 161 6 6 300 458 755 6.06e-71 233
MS.gene84585.t1 MTR_2g042130 43.158 285 156 5 19 298 487 770 9.58e-71 233
MS.gene84585.t1 MTR_1g078110 41.806 299 162 6 10 300 459 753 1.92e-69 229
MS.gene84585.t1 MTR_4g125180 45.172 290 143 9 19 298 466 749 2.10e-69 229
MS.gene84585.t1 MTR_4g073540 44.251 287 149 5 24 300 482 767 4.78e-69 228
MS.gene84585.t1 MTR_8g024390 42.373 295 151 7 18 300 470 757 2.84e-67 224
MS.gene84585.t1 MTR_8g027260 43.206 287 145 7 23 302 378 653 5.59e-67 221
MS.gene84585.t1 MTR_1g102350 44.245 278 146 6 29 300 502 776 5.75e-67 223
MS.gene84585.t1 MTR_1g006990 45.965 285 133 8 25 301 464 735 1.03e-66 222
MS.gene84585.t1 MTR_8g022870 44.561 285 142 9 29 300 494 775 2.41e-66 221
MS.gene84585.t1 MTR_4g053630 44.710 293 153 7 11 300 366 652 1.13e-65 218
MS.gene84585.t1 MTR_4g053630 46.071 280 142 7 24 300 456 729 2.53e-65 218
MS.gene84585.t1 MTR_8g005710 42.105 285 147 7 25 302 427 700 6.53e-65 216
MS.gene84585.t1 MTR_7g075900 46.043 278 140 9 31 300 496 771 1.06e-64 217
MS.gene84585.t1 MTR_1g007030 43.860 285 139 8 25 301 462 733 1.36e-64 216
MS.gene84585.t1 MTR_1g048110 44.211 285 138 9 25 301 460 731 1.47e-64 216
MS.gene84585.t1 MTR_8g021130 43.972 282 142 7 31 301 499 775 4.33e-64 215
MS.gene84585.t1 MTR_8g024420 42.123 292 156 8 18 300 434 721 2.48e-63 213
MS.gene84585.t1 MTR_1g018510 41.333 300 156 7 16 298 427 723 4.70e-63 212
MS.gene84585.t1 MTR_7g034380 42.160 287 146 8 25 303 420 694 6.07e-63 211
MS.gene84585.t1 MTR_3g114420 42.509 287 149 8 24 300 484 764 8.54e-63 212
MS.gene84585.t1 MTR_2g042650 44.211 285 138 9 25 301 372 643 1.22e-62 209
MS.gene84585.t1 MTR_3g104930 43.110 283 148 8 24 297 480 758 5.94e-62 209
MS.gene84585.t1 MTR_7g118080 43.197 294 155 7 16 300 465 755 5.50e-61 207
MS.gene84585.t1 MTR_2g018135 43.986 291 147 7 18 300 500 782 1.51e-60 206
MS.gene84585.t1 MTR_8g083220 43.056 288 149 8 18 301 499 775 2.13e-60 205
MS.gene84585.t1 MTR_4g053635 44.643 280 143 8 24 300 402 672 7.89e-60 202
MS.gene84585.t1 MTR_8g042710 41.429 280 156 6 27 301 488 764 1.08e-59 203
MS.gene84585.t1 MTR_8g042670 41.429 280 153 7 27 301 361 634 1.48e-59 201
MS.gene84585.t1 MTR_2g018125 43.299 291 149 7 18 300 501 783 5.53e-59 201
MS.gene84585.t1 MTR_3g464790 42.403 283 138 8 24 297 462 728 5.56e-59 201
MS.gene84585.t1 MTR_8g006680 42.014 288 133 10 25 301 459 723 5.63e-59 201
MS.gene84585.t1 MTR_8g005300 42.014 288 133 10 25 301 459 723 5.63e-59 201
MS.gene84585.t1 MTR_8g005640 42.014 288 133 10 25 301 459 723 5.63e-59 201
MS.gene84585.t1 MTR_4g102400 45.126 277 134 10 31 300 487 752 6.47e-59 201
MS.gene84585.t1 MTR_8g042670 41.429 280 153 7 27 301 485 758 6.64e-59 201
MS.gene84585.t1 MTR_6g055570 42.857 287 143 9 25 302 457 731 2.12e-58 199
MS.gene84585.t1 MTR_7g079310 41.608 286 156 8 23 300 481 763 2.46e-58 199
MS.gene84585.t1 MTR_5g011340 44.643 280 136 10 31 303 486 753 2.59e-58 199
MS.gene84585.t1 MTR_7g079300 40.210 286 160 8 23 300 483 765 7.83e-58 198
MS.gene84585.t1 MTR_1g079120 41.319 288 157 8 23 300 475 760 2.79e-57 197
MS.gene84585.t1 MTR_5g011310 43.929 280 138 10 31 303 489 756 4.44e-57 196
MS.gene84585.t1 MTR_5g011320 43.416 281 138 10 31 303 481 748 6.51e-57 195
MS.gene84585.t1 MTR_7g104200 40.000 290 151 8 23 302 467 743 9.01e-57 195
MS.gene84585.t1 MTR_8g033150 42.349 281 138 9 30 300 458 724 2.87e-56 193
MS.gene84585.t1 MTR_8g033150 42.349 281 138 9 30 300 485 751 3.42e-56 194
MS.gene84585.t1 MTR_5g011370 43.369 279 141 9 31 303 509 776 6.68e-56 193
MS.gene84585.t1 MTR_5g011190 44.203 276 137 9 31 300 489 753 7.24e-56 192
MS.gene84585.t1 MTR_7g098630 41.554 296 156 10 18 300 469 760 9.79e-56 193
MS.gene84585.t1 MTR_5g011280 43.116 276 140 9 31 300 491 755 2.57e-55 191
MS.gene84585.t1 MTR_8g024370 39.189 296 168 6 13 300 465 756 4.84e-55 191
MS.gene84585.t1 MTR_6g055410 41.544 272 138 9 40 302 454 713 5.02e-55 190
MS.gene84585.t1 MTR_8g079900 41.935 279 142 9 30 300 377 643 9.05e-55 188
MS.gene84585.t1 MTR_7g075890 38.312 308 160 9 6 302 611 899 1.33e-54 190
MS.gene84585.t1 MTR_8g079900 41.935 279 142 9 30 300 475 741 2.57e-54 188
MS.gene84585.t1 MTR_2g044630 44.141 256 122 9 54 301 464 706 3.31e-53 185
MS.gene84585.t1 MTR_3g010080 40.067 297 147 13 18 301 454 732 4.49e-52 182
MS.gene84585.t1 MTR_5g011270 40.493 284 136 11 31 300 487 751 3.80e-51 180
MS.gene84585.t1 MTR_5g011260 40.141 284 137 11 31 300 487 751 2.83e-50 177
MS.gene84585.t1 MTR_6g075370 40.996 261 129 9 17 269 415 658 3.76e-49 173
MS.gene84585.t1 MTR_2g042640 44.758 248 98 10 25 262 393 611 3.09e-48 170
MS.gene84585.t1 MTR_4g127480 40.484 289 147 11 28 301 536 814 1.55e-47 170
MS.gene84585.t1 MTR_3g452290 39.130 253 116 6 53 302 353 570 6.09e-44 158
MS.gene84585.t1 MTR_3g451220 39.130 253 116 6 53 302 353 570 6.09e-44 158
MS.gene84585.t1 MTR_3g114140 40.081 247 127 9 24 258 184 421 1.03e-41 149
MS.gene84585.t1 MTR_2g037850 38.811 286 148 11 29 298 537 811 8.77e-41 151
MS.gene84585.t1 MTR_2g070260 44.624 186 84 7 92 269 1 175 9.61e-39 136
MS.gene84585.t1 MTR_8g089230 36.897 290 155 11 31 303 570 848 1.46e-36 139
MS.gene84585.t1 MTR_4g132620 31.818 308 185 13 7 300 518 814 4.71e-33 129
MS.gene84585.t1 MTR_4g126230 36.893 206 112 6 31 230 55 248 9.89e-33 121
MS.gene84585.t1 MTR_2g046740 36.082 291 157 13 31 303 562 841 2.77e-32 126
MS.gene84585.t1 MTR_5g044060 44.444 135 73 2 19 152 1 134 2.01e-28 108
MS.gene84585.t1 MTR_4g071560 47.619 126 58 2 17 139 410 530 4.94e-28 113
MS.gene84585.t1 MTR_4g053665 34.109 258 115 10 50 300 1 210 5.34e-27 105
MS.gene84585.t1 MTR_3g114410 54.808 104 39 2 24 124 483 581 2.45e-25 106
MS.gene84585.t1 MTR_8g042710 48.515 101 52 0 27 127 488 588 6.57e-24 102
MS.gene84585.t1 MTR_8g027660 32.258 186 106 5 116 300 80 246 4.76e-22 93.2
MS.gene84585.t1 MTR_5g081130 33.735 166 97 7 143 300 12 172 1.80e-20 87.8
MS.gene84585.t1 MTR_7g079295 35.404 161 86 8 151 300 356 509 2.01e-15 76.6
MS.gene84585.t1 MTR_5g011300 46.667 90 47 1 92 181 1 89 1.78e-14 68.6
MS.gene84585.t1 MTR_3g005755 45.946 74 39 1 81 153 235 308 5.69e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84585.t1 AT2G04160 54.545 286 125 5 18 301 489 771 1.63e-94 296
MS.gene84585.t1 AT5G59810 54.182 275 119 6 29 301 506 775 1.12e-92 291
MS.gene84585.t1 AT5G67360 46.667 285 148 3 19 300 471 754 1.30e-78 254
MS.gene84585.t1 AT2G05920 48.029 279 140 4 24 298 470 747 5.69e-78 252
MS.gene84585.t1 AT5G45650 44.590 305 149 8 6 300 494 788 1.20e-70 233
MS.gene84585.t1 AT5G45650 44.590 305 149 8 6 300 494 788 1.20e-70 233
MS.gene84585.t1 AT4G26330 43.151 292 155 7 17 300 433 721 4.67e-67 223
MS.gene84585.t1 AT4G26330 42.808 292 156 7 17 300 447 735 5.61e-67 223
MS.gene84585.t1 AT5G51750 45.161 279 143 6 29 300 499 774 3.98e-66 221
MS.gene84585.t1 AT1G20160 44.291 289 147 8 24 303 442 725 1.19e-64 216
MS.gene84585.t1 AT1G20160 44.291 289 147 8 24 303 481 764 2.23e-64 216
MS.gene84585.t1 AT3G14240 44.014 284 145 8 29 300 488 769 2.75e-64 216
MS.gene84585.t1 AT1G32970 43.945 289 149 8 18 303 447 725 1.44e-62 211
MS.gene84585.t1 AT4G21630 44.186 301 156 6 4 301 463 754 2.24e-62 210
MS.gene84585.t1 AT4G34980 43.599 289 149 9 24 300 472 758 4.98e-62 209
MS.gene84585.t1 AT3G14067 42.105 285 150 8 30 301 486 768 5.03e-62 210
MS.gene84585.t1 AT4G21640 44.702 302 153 7 4 301 437 728 5.14e-62 209
MS.gene84585.t1 AT5G59100 46.237 279 131 9 31 300 469 737 8.59e-62 209
MS.gene84585.t1 AT4G10520 42.759 290 153 6 17 303 468 747 2.80e-61 207
MS.gene84585.t1 AT5G58840 45.161 279 136 8 29 300 438 706 3.42e-61 206
MS.gene84585.t1 AT4G00230 43.728 279 138 9 30 300 476 743 3.62e-60 204
MS.gene84585.t1 AT5G59120 41.667 300 152 9 10 300 442 727 5.28e-60 204
MS.gene84585.t1 AT4G10550 42.069 290 154 8 17 303 435 713 6.14e-60 203
MS.gene84585.t1 AT4G10550 42.069 290 154 8 17 303 435 713 6.14e-60 203
MS.gene84585.t1 AT4G21650 42.809 299 159 6 6 301 472 761 7.34e-60 204
MS.gene84585.t1 AT5G11940 43.151 292 151 9 17 303 474 755 1.02e-59 203
MS.gene84585.t1 AT4G10550 42.069 290 154 8 17 303 507 785 1.13e-59 204
MS.gene84585.t1 AT4G10550 42.069 290 154 8 17 303 491 769 1.15e-59 203
MS.gene84585.t1 AT1G66220 43.151 292 144 8 16 303 474 747 1.22e-59 203
MS.gene84585.t1 AT5G58830 43.682 277 139 8 31 300 439 705 8.10e-59 200
MS.gene84585.t1 AT3G46850 42.466 292 148 9 16 300 456 734 9.08e-59 200
MS.gene84585.t1 AT5G59090 40.830 289 149 9 21 300 453 728 1.02e-58 200
MS.gene84585.t1 AT5G59090 40.830 289 149 9 21 300 451 726 1.02e-58 200
MS.gene84585.t1 AT5G59090 40.830 289 144 9 21 300 453 723 2.09e-58 199
MS.gene84585.t1 AT1G01900 45.230 283 138 9 31 300 493 771 2.21e-58 200
MS.gene84585.t1 AT5G58820 44.097 288 130 10 26 300 431 700 8.62e-58 197
MS.gene84585.t1 AT4G10540 40.345 290 160 6 17 303 487 766 9.35e-58 198
MS.gene84585.t1 AT5G59190 45.749 247 118 6 29 269 422 658 1.43e-57 196
MS.gene84585.t1 AT3G46840 43.686 293 143 11 16 300 456 734 3.09e-57 196
MS.gene84585.t1 AT4G10510 40.345 290 160 6 17 303 418 697 6.15e-57 195
MS.gene84585.t1 AT4G10510 40.345 290 160 6 17 303 433 712 7.28e-57 195
MS.gene84585.t1 AT4G10510 40.345 290 160 6 17 303 477 756 1.09e-56 195
MS.gene84585.t1 AT4G10510 40.345 290 160 6 17 303 489 768 1.32e-56 195
MS.gene84585.t1 AT1G32940 41.379 290 157 6 17 303 435 714 2.87e-56 193
MS.gene84585.t1 AT1G32940 41.379 290 157 6 17 303 435 714 2.87e-56 193
MS.gene84585.t1 AT5G45640 41.077 297 125 8 23 300 486 751 3.33e-56 194
MS.gene84585.t1 AT1G32940 41.379 290 157 6 17 303 486 765 4.68e-56 193
MS.gene84585.t1 AT5G59130 44.404 277 134 9 31 300 423 686 8.76e-56 192
MS.gene84585.t1 AT5G59130 44.404 277 134 9 31 300 462 725 1.34e-55 192
MS.gene84585.t1 AT5G59130 44.404 277 134 9 31 300 452 715 1.36e-55 192
MS.gene84585.t1 AT1G32950 39.310 290 163 5 17 303 434 713 1.42e-55 191
MS.gene84585.t1 AT5G59130 44.404 277 134 9 31 300 458 721 1.49e-55 191
MS.gene84585.t1 AT1G32950 39.310 290 163 5 17 303 485 764 2.05e-55 192
MS.gene84585.t1 AT5G03620 39.735 302 143 11 23 302 476 760 2.79e-55 191
MS.gene84585.t1 AT1G32960 39.310 290 163 5 17 303 489 768 4.48e-55 191
MS.gene84585.t1 AT1G04110 40.333 300 163 9 16 303 478 773 5.12e-55 191
MS.gene84585.t1 AT1G66210 41.924 291 148 9 18 303 479 753 1.36e-54 189
MS.gene84585.t1 AT4G21326 40.604 298 166 5 6 301 400 688 1.12e-53 186
MS.gene84585.t1 AT1G20150 40.614 293 143 10 31 303 492 773 1.09e-52 184
MS.gene84585.t1 AT4G21323 40.468 299 160 9 11 303 510 796 5.25e-52 182
MS.gene84585.t1 AT4G15040 41.727 278 142 8 31 300 420 685 1.51e-50 177
MS.gene84585.t1 AT4G15040 41.727 278 142 8 31 300 420 685 1.51e-50 177
MS.gene84585.t1 AT4G10530 38.966 290 151 7 17 303 472 738 5.49e-50 176
MS.gene84585.t1 AT1G32980 45.989 187 97 4 88 271 3 188 5.81e-44 149
MS.gene84585.t1 AT4G30020 36.577 298 152 13 28 303 533 815 7.44e-43 157
MS.gene84585.t1 AT4G30020 36.577 298 152 13 28 303 533 815 7.44e-43 157
MS.gene84585.t1 AT4G30020 36.577 298 152 13 28 303 533 815 7.44e-43 157
MS.gene84585.t1 AT4G30020 36.577 298 152 13 28 303 533 815 7.44e-43 157
MS.gene84585.t1 AT2G19170 37.329 292 147 12 28 298 532 808 8.10e-42 154
MS.gene84585.t1 AT2G19170 37.329 292 147 12 28 298 532 808 8.10e-42 154
MS.gene84585.t1 AT5G67090 36.000 300 141 12 9 289 448 715 8.27e-42 154
MS.gene84585.t1 AT2G39850 36.054 294 146 12 32 300 489 765 2.93e-40 149
MS.gene84585.t1 AT1G62340 31.596 307 189 8 7 301 533 830 6.61e-37 140
MS.gene84585.t1 AT4G20430 34.354 294 157 14 31 303 549 827 1.85e-30 121
MS.gene84585.t1 AT4G20430 34.471 293 158 14 31 303 573 851 1.91e-30 121
MS.gene84585.t1 AT4G20430 34.471 293 158 14 31 303 573 851 1.91e-30 121
MS.gene84585.t1 AT5G44530 34.364 291 161 13 31 303 558 836 7.95e-30 119
MS.gene84585.t1 AT1G30600 36.818 220 116 7 31 235 548 759 8.17e-29 116
MS.gene84585.t1 AT5G58840 60.417 96 37 1 29 124 438 532 8.38e-28 113
MS.gene84585.t1 AT5G03620 52.941 102 47 1 23 124 476 576 8.77e-28 113
MS.gene84585.t1 AT4G00230 53.061 98 45 1 30 127 476 572 3.16e-27 111
MS.gene84585.t1 AT5G44530 31.962 316 160 14 31 303 558 861 2.25e-26 109
MS.gene84585.t1 AT5G59110 38.889 162 88 8 148 300 7 166 7.14e-23 93.2
MS.gene84585.t1 AT1G32940 48.624 109 48 2 17 125 486 586 2.67e-19 88.6

Find 66 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGAAATTCAAGGAATT+TGG 0.178851 7.3:-39575247 None:intergenic
ATAGCTGCTGGACTCCAATT+TGG 0.219580 7.3:-39574620 None:intergenic
CCTGGACTTGTTTACGATCT+AGG 0.256940 7.3:+39574977 MS.gene84585:CDS
TGTTTACGATCTAGGGATTA+AGG 0.269838 7.3:+39574985 MS.gene84585:CDS
CCACGAAGGAAATACCAATT+TGG 0.277770 7.3:+39575322 MS.gene84585:CDS
TCCATCGTAGTTCCCCAAAT+TGG 0.281897 7.3:-39575336 None:intergenic
TCAAAACACTACATCCAAAT+TGG 0.283601 7.3:+39574606 MS.gene84585:CDS
TCCTTGAATTTCAAGAAAAT+AGG 0.302304 7.3:+39575253 MS.gene84585:CDS
CACGAAGGAAATACCAATTT+GGG 0.314779 7.3:+39575323 MS.gene84585:CDS
ACAGCATTCAATCCAAGATT+TGG 0.320748 7.3:-39575136 None:intergenic
TCAATCACATTACCAAATCT+TGG 0.323046 7.3:+39575124 MS.gene84585:CDS
TTGAACTTCTTATGTGCATA+TGG 0.331145 7.3:+39575013 MS.gene84585:CDS
AACATGACATTTACTTGTTC+AGG 0.339929 7.3:+39575070 MS.gene84585:CDS
TCAATCACCTTGAGTATTGA+TGG 0.346146 7.3:-39574346 None:intergenic
GGGAATCAGGCACTAAAATA+AGG 0.354809 7.3:+39574239 MS.gene84585:intron
CCTCATGTTGTTGGCACTGC+TGG 0.359066 7.3:+39574578 MS.gene84585:CDS
GTTCCTTGCAATACATTGTA+TGG 0.359612 7.3:-39574542 None:intergenic
CATTTGCGCCGAACAGTAAC+GGG 0.361992 7.3:-39575385 None:intergenic
ATTGATGGTTGAACTTGATT+TGG 0.377113 7.3:-39574331 None:intergenic
GATGAGAATGAAGCCATAAC+TGG 0.405810 7.3:-39574301 None:intergenic
AATCCATTTGCATATGGTTC+AGG 0.406844 7.3:+39574926 MS.gene84585:CDS
CCAAATTGGTATTTCCTTCG+TGG 0.412320 7.3:-39575322 None:intergenic
TTATCAAATGCATCACGTAT+TGG 0.414236 7.3:-39574893 None:intergenic
TAATGAGTCCCGTTACTGTT+CGG 0.426793 7.3:+39575377 MS.gene84585:CDS
CTGGCAAATCCATTTGCATA+TGG 0.429546 7.3:+39574920 MS.gene84585:CDS
CTGGACTTGTTTACGATCTA+GGG 0.429849 7.3:+39574978 MS.gene84585:CDS
TTGTTGCTTGCACAATAACT+TGG 0.441608 7.3:-39575291 None:intergenic
ATGTCATGCCCTCATGTTGT+TGG 0.455433 7.3:+39574569 MS.gene84585:CDS
CCAGGATCTATTGCACTGTT+GGG 0.460305 7.3:-39574959 None:intergenic
TCCAGGATCTATTGCACTGT+TGG 0.462621 7.3:-39574960 None:intergenic
TAAGTGCTGAAATGAGTTGT+TGG 0.464449 7.3:-39575042 None:intergenic
GAGTCCAGCAGCTATTAAAT+CGG 0.488824 7.3:+39574628 MS.gene84585:CDS
AGATTTGGTAATGTGATTGA+AGG 0.490106 7.3:-39575121 None:intergenic
TCATTTGCGCCGAACAGTAA+CGG 0.490606 7.3:-39575386 None:intergenic
CAGCCTGATGTTACTGCACC+CGG 0.498190 7.3:+39574446 MS.gene84585:intron
TTTGCAAAAGCACAATTACC+TGG 0.501282 7.3:+39575205 MS.gene84585:CDS
ACTCGCACTGTAACCAATGT+TGG 0.505759 7.3:+39575166 MS.gene84585:CDS
AAGAAAGCCAGCTCCAGTTA+TGG 0.508920 7.3:+39574288 MS.gene84585:CDS
CTCGCACTGTAACCAATGTT+GGG 0.508999 7.3:+39575167 MS.gene84585:CDS
GGGGAACTACGATGGACAAA+TGG 0.512449 7.3:+39575343 MS.gene84585:CDS
CCCAACAGTGCAATAGATCC+TGG 0.515467 7.3:+39574959 MS.gene84585:CDS
AATGAAGCCATAACTGGAGC+TGG 0.521705 7.3:-39574295 None:intergenic
TGCACTTGCGAACAATGAAT+AGG 0.526618 7.3:-39574486 None:intergenic
CCTAGATCGTAAACAAGTCC+AGG 0.528932 7.3:-39574977 None:intergenic
ATAGCCGATTTAATAGCTGC+TGG 0.534311 7.3:-39574632 None:intergenic
TGGCCTGAACCATATGCAAA+TGG 0.538122 7.3:-39574929 None:intergenic
ACACCGGGTGCAGTAACATC+AGG 0.543083 7.3:-39574449 None:intergenic
TTTCCATACAATGTATTGCA+AGG 0.546445 7.3:+39574539 MS.gene84585:CDS
ACCAATTTGGGGAACTACGA+TGG 0.552524 7.3:+39575335 MS.gene84585:CDS
ATGAAACCTCATGCATTGAA+AGG 0.561634 7.3:+39574066 MS.gene84585:CDS
TGTACTTGGTGGCCCAACAT+TGG 0.561671 7.3:-39575179 None:intergenic
TTGCACTGTTGGGTTGAATG+TGG 0.565154 7.3:-39574949 None:intergenic
ATGGCTTCATTCTCATCTAG+AGG 0.572550 7.3:+39574307 MS.gene84585:CDS
TTTGCAAAATATGTACTTGG+TGG 0.575276 7.3:-39575190 None:intergenic
CCAGCAGTGCCAACAACATG+AGG 0.578451 7.3:-39574578 None:intergenic
GATTTGGTAATGTGATTGAA+GGG 0.580904 7.3:-39575120 None:intergenic
GAAGTTCCTTTCAATGCATG+AGG 0.581902 7.3:-39574072 None:intergenic
AAATCGGCTATCATGACCAC+TGG 0.587876 7.3:+39574644 MS.gene84585:CDS
TGATGCATTTGATAAAACAC+TGG 0.608301 7.3:+39574901 MS.gene84585:CDS
AGTTCAACCATCAATACTCA+AGG 0.610490 7.3:+39574339 MS.gene84585:CDS
GGCAGCAAGTATGTTCACAC+CGG 0.611362 7.3:-39574465 None:intergenic
GCAGCAAGTATGTTCACACC+GGG 0.652843 7.3:-39574464 None:intergenic
CAGCAGTGCCAACAACATGA+GGG 0.654733 7.3:-39574577 None:intergenic
TTAATAACAGACATTCGTCG+AGG 0.682771 7.3:+39574515 MS.gene84585:CDS
ACGAAGGAAATACCAATTTG+GGG 0.707166 7.3:+39575324 MS.gene84585:CDS
CAACAAGTGTGACTCCACGA+AGG 0.723694 7.3:+39575308 MS.gene84585:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATTATATATACCTT+TGG + chr7.3:39574102-39574121 MS.gene84585:intron 10.0%
!! AAATAACATGTTACAAATAT+AGG + chr7.3:39574183-39574202 MS.gene84585:intron 15.0%
!! AATAACATGTTACAAATATA+GGG + chr7.3:39574184-39574203 MS.gene84585:intron 15.0%
!!! ATCATATATTTTTATTTCGT+AGG + chr7.3:39574218-39574237 MS.gene84585:intron 15.0%
!!! TCATATATTTTTATTTCGTA+GGG + chr7.3:39574219-39574238 MS.gene84585:intron 15.0%
!! GATTAATGATATGATAAAAG+TGG + chr7.3:39574795-39574814 MS.gene84585:intron 20.0%
!! TAATACTATAATTTCACCAA+AGG - chr7.3:39574121-39574140 None:intergenic 20.0%
! ATGATTTATGATTGTATGCA+TGG - chr7.3:39574718-39574737 None:intergenic 25.0%
! TCCTTGAATTTCAAGAAAAT+AGG + chr7.3:39575253-39575272 MS.gene84585:CDS 25.0%
! TTCTTGAAATTCAAGGAATT+TGG - chr7.3:39575250-39575269 None:intergenic 25.0%
!! ACAACAACAATTTTATATCC+AGG - chr7.3:39575226-39575245 None:intergenic 25.0%
!! ACCTATTTTCTTGAAATTCA+AGG - chr7.3:39575257-39575276 None:intergenic 25.0%
!! TGTTACTTATCCAAATATGT+TGG + chr7.3:39574837-39574856 MS.gene84585:intron 25.0%
!!! AGTTTGTGTTGATTTTTCAA+TGG + chr7.3:39574401-39574420 MS.gene84585:intron 25.0%
!!! GTTTGTGTTGATTTTTCAAT+GGG + chr7.3:39574402-39574421 MS.gene84585:intron 25.0%
!!! TTGAAAGTTTGTTACAACAA+GGG - chr7.3:39574148-39574167 None:intergenic 25.0%
!!! TTTGAAAGTTTGTTACAACA+AGG - chr7.3:39574149-39574168 None:intergenic 25.0%
AACATGACATTTACTTGTTC+AGG + chr7.3:39575070-39575089 MS.gene84585:CDS 30.0%
TCAAAACACTACATCCAAAT+TGG + chr7.3:39574606-39574625 MS.gene84585:CDS 30.0%
TCAATCACATTACCAAATCT+TGG + chr7.3:39575124-39575143 MS.gene84585:CDS 30.0%
TGATGCATTTGATAAAACAC+TGG + chr7.3:39574901-39574920 MS.gene84585:CDS 30.0%
TTATCAAATGCATCACGTAT+TGG - chr7.3:39574896-39574915 None:intergenic 30.0%
TTGAACTTCTTATGTGCATA+TGG + chr7.3:39575013-39575032 MS.gene84585:CDS 30.0%
TTTCCATACAATGTATTGCA+AGG + chr7.3:39574539-39574558 MS.gene84585:CDS 30.0%
TTTGCAAAATATGTACTTGG+TGG - chr7.3:39575193-39575212 None:intergenic 30.0%
! ATTGATGGTTGAACTTGATT+TGG - chr7.3:39574334-39574353 None:intergenic 30.0%
! GCTTTTGCAAAATATGTACT+TGG - chr7.3:39575196-39575215 None:intergenic 30.0%
!! AGATTTGGTAATGTGATTGA+AGG - chr7.3:39575124-39575143 None:intergenic 30.0%
!! GATTTGGTAATGTGATTGAA+GGG - chr7.3:39575123-39575142 None:intergenic 30.0%
!! TTTTTATTTCGTAGGGAATC+AGG + chr7.3:39574226-39574245 MS.gene84585:intron 30.0%
!!! TGTTGATTTTTCAATGGGAT+TGG + chr7.3:39574407-39574426 MS.gene84585:intron 30.0%
AATCCATTTGCATATGGTTC+AGG + chr7.3:39574926-39574945 MS.gene84585:CDS 35.0%
ACAGCATTCAATCCAAGATT+TGG - chr7.3:39575139-39575158 None:intergenic 35.0%
ACGAAGGAAATACCAATTTG+GGG + chr7.3:39575324-39575343 MS.gene84585:CDS 35.0%
AGTTCAACCATCAATACTCA+AGG + chr7.3:39574339-39574358 MS.gene84585:CDS 35.0%
ATGAAACCTCATGCATTGAA+AGG + chr7.3:39574066-39574085 MS.gene84585:CDS 35.0%
CACGAAGGAAATACCAATTT+GGG + chr7.3:39575323-39575342 MS.gene84585:CDS 35.0%
GTTCCTTGCAATACATTGTA+TGG - chr7.3:39574545-39574564 None:intergenic 35.0%
TGTTTACGATCTAGGGATTA+AGG + chr7.3:39574985-39575004 MS.gene84585:CDS 35.0%
TTAATAACAGACATTCGTCG+AGG + chr7.3:39574515-39574534 MS.gene84585:CDS 35.0%
! TTGTTGCTTGCACAATAACT+TGG - chr7.3:39575294-39575313 None:intergenic 35.0%
! TTTGCAAAAGCACAATTACC+TGG + chr7.3:39575205-39575224 MS.gene84585:CDS 35.0%
!! TAAGTGCTGAAATGAGTTGT+TGG - chr7.3:39575045-39575064 None:intergenic 35.0%
!! TCAATCACCTTGAGTATTGA+TGG - chr7.3:39574349-39574368 None:intergenic 35.0%
ACCTGACACACACTATATCT+AGG + chr7.3:39574680-39574699 MS.gene84585:intron 40.0%
ATGGCTTCATTCTCATCTAG+AGG + chr7.3:39574307-39574326 MS.gene84585:CDS 40.0%
CCAAATTGGTATTTCCTTCG+TGG - chr7.3:39575325-39575344 None:intergenic 40.0%
CCACGAAGGAAATACCAATT+TGG + chr7.3:39575322-39575341 MS.gene84585:CDS 40.0%
CTGGCAAATCCATTTGCATA+TGG + chr7.3:39574920-39574939 MS.gene84585:CDS 40.0%
GAAGTTCCTTTCAATGCATG+AGG - chr7.3:39574075-39574094 None:intergenic 40.0%
GAGTCCAGCAGCTATTAAAT+CGG + chr7.3:39574628-39574647 MS.gene84585:CDS 40.0%
GATGAGAATGAAGCCATAAC+TGG - chr7.3:39574304-39574323 None:intergenic 40.0%
GGGAATCAGGCACTAAAATA+AGG + chr7.3:39574239-39574258 MS.gene84585:intron 40.0%
GGTGAGAGAAAATATACCAG+TGG - chr7.3:39574663-39574682 None:intergenic 40.0%
TAATGAGTCCCGTTACTGTT+CGG + chr7.3:39575377-39575396 MS.gene84585:CDS 40.0%
TCCTAGATATAGTGTGTGTC+AGG - chr7.3:39574684-39574703 None:intergenic 40.0%
TGCACTTGCGAACAATGAAT+AGG - chr7.3:39574489-39574508 None:intergenic 40.0%
TTGCTGCAAGCCAACATATT+TGG - chr7.3:39574850-39574869 None:intergenic 40.0%
! ATAGCCGATTTAATAGCTGC+TGG - chr7.3:39574635-39574654 None:intergenic 40.0%
! CTGGACTTGTTTACGATCTA+GGG + chr7.3:39574978-39574997 MS.gene84585:CDS 40.0%
AAATCGGCTATCATGACCAC+TGG + chr7.3:39574644-39574663 MS.gene84585:CDS 45.0%
AAGAAAGCCAGCTCCAGTTA+TGG + chr7.3:39574288-39574307 MS.gene84585:CDS 45.0%
AATGAAGCCATAACTGGAGC+TGG - chr7.3:39574298-39574317 None:intergenic 45.0%
ACCAATTTGGGGAACTACGA+TGG + chr7.3:39575335-39575354 MS.gene84585:CDS 45.0%
ACTCGCACTGTAACCAATGT+TGG + chr7.3:39575166-39575185 MS.gene84585:CDS 45.0%
ATAGCTGCTGGACTCCAATT+TGG - chr7.3:39574623-39574642 None:intergenic 45.0%
ATGTCATGCCCTCATGTTGT+TGG + chr7.3:39574569-39574588 MS.gene84585:CDS 45.0%
CCAGGATCTATTGCACTGTT+GGG - chr7.3:39574962-39574981 None:intergenic 45.0%
CCTAGATCGTAAACAAGTCC+AGG - chr7.3:39574980-39574999 None:intergenic 45.0%
CTCGCACTGTAACCAATGTT+GGG + chr7.3:39575167-39575186 MS.gene84585:CDS 45.0%
TCATTTGCGCCGAACAGTAA+CGG - chr7.3:39575389-39575408 None:intergenic 45.0%
TCCAGGATCTATTGCACTGT+TGG - chr7.3:39574963-39574982 None:intergenic 45.0%
TCCATCGTAGTTCCCCAAAT+TGG - chr7.3:39575339-39575358 None:intergenic 45.0%
TGGCCTGAACCATATGCAAA+TGG - chr7.3:39574932-39574951 None:intergenic 45.0%
! CCTGGACTTGTTTACGATCT+AGG + chr7.3:39574977-39574996 MS.gene84585:CDS 45.0%
!! TTGCACTGTTGGGTTGAATG+TGG - chr7.3:39574952-39574971 None:intergenic 45.0%
CAACAAGTGTGACTCCACGA+AGG + chr7.3:39575308-39575327 MS.gene84585:CDS 50.0%
CAGCAGTGCCAACAACATGA+GGG - chr7.3:39574580-39574599 None:intergenic 50.0%
CATTTGCGCCGAACAGTAAC+GGG - chr7.3:39575388-39575407 None:intergenic 50.0%
CCCAACAGTGCAATAGATCC+TGG + chr7.3:39574959-39574978 MS.gene84585:CDS 50.0%
GCAGCAAGTATGTTCACACC+GGG - chr7.3:39574467-39574486 None:intergenic 50.0%
GGCAGCAAGTATGTTCACAC+CGG - chr7.3:39574468-39574487 None:intergenic 50.0%
GGGGAACTACGATGGACAAA+TGG + chr7.3:39575343-39575362 MS.gene84585:CDS 50.0%
! TGTACTTGGTGGCCCAACAT+TGG - chr7.3:39575182-39575201 None:intergenic 50.0%
ACACCGGGTGCAGTAACATC+AGG - chr7.3:39574452-39574471 None:intergenic 55.0%
CAGCCTGATGTTACTGCACC+CGG + chr7.3:39574446-39574465 MS.gene84585:intron 55.0%
CCAGCAGTGCCAACAACATG+AGG - chr7.3:39574581-39574600 None:intergenic 55.0%
CCTCATGTTGTTGGCACTGC+TGG + chr7.3:39574578-39574597 MS.gene84585:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 39574066 39575408 39574066 ID=MS.gene84585
chr7.3 mRNA 39574066 39575408 39574066 ID=MS.gene84585.t1;Parent=MS.gene84585
chr7.3 exon 39574066 39574097 39574066 ID=MS.gene84585.t1.exon1;Parent=MS.gene84585.t1
chr7.3 CDS 39574066 39574097 39574066 ID=cds.MS.gene84585.t1;Parent=MS.gene84585.t1
chr7.3 exon 39574240 39574360 39574240 ID=MS.gene84585.t1.exon2;Parent=MS.gene84585.t1
chr7.3 CDS 39574240 39574360 39574240 ID=cds.MS.gene84585.t1;Parent=MS.gene84585.t1
chr7.3 exon 39574449 39574665 39574449 ID=MS.gene84585.t1.exon3;Parent=MS.gene84585.t1
chr7.3 CDS 39574449 39574665 39574449 ID=cds.MS.gene84585.t1;Parent=MS.gene84585.t1
chr7.3 exon 39574867 39575408 39574867 ID=MS.gene84585.t1.exon4;Parent=MS.gene84585.t1
chr7.3 CDS 39574867 39575408 39574867 ID=cds.MS.gene84585.t1;Parent=MS.gene84585.t1
Gene Sequence

>MS.gene84585

ATGAAACCTCATGCATTGAAAGGAACTTCGACGTAATTATTAATTATATATACCTTTGGTGAAATTATAGTATTACATACCCTTGTTGTAACAAACTTTCAAAATTGTGATATCATAAAATAACATGTTACAAATATAGGGCATCATACATAATCATATATTTTTATTTCGTAGGGAATCAGGCACTAAAATAAGGTTGTCACAAGCAAAAACATTGTATAGAAGAAAGCCAGCTCCAGTTATGGCTTCATTCTCATCTAGAGGACCAAATCAAGTTCAACCATCAATACTCAAGGTGATTGATATACATTCAGATTTCTTATAACACTTCTATTAGTTTGTGTTGATTTTTCAATGGGATTGGTTTTGATTTTTTATTTCAGCCTGATGTTACTGCACCCGGTGTGAACATACTTGCTGCCTATTCATTGTTCGCAAGTGCATCTAATTTAATAACAGACATTCGTCGAGGTTTTCCATACAATGTATTGCAAGGAACTTCAATGTCATGCCCTCATGTTGTTGGCACTGCTGGACTTATCAAAACACTACATCCAAATTGGAGTCCAGCAGCTATTAAATCGGCTATCATGACCACTGGTATATTTTCTCTCACCTGACACACACTATATCTAGGAGCAAATACTAACCATGCATACAATCATAAATCATAATTGATAGTTGACTTAAGTTGAAGTTAAATAATTTTGCATATTCATTATGATATATGATTAATGATATGATAAAAGTGGATTATGAAAGAAAATTAGATGTTACTTATCCAAATATGTTGGCTTGCAGCAAGCACAAGAGATAACACTAACAATCCAATACGTGATGCATTTGATAAAACACTGGCAAATCCATTTGCATATGGTTCAGGCCACATTCAACCCAACAGTGCAATAGATCCTGGACTTGTTTACGATCTAGGGATTAAGGATTACTTGAACTTCTTATGTGCATATGGATACAACCAACAACTCATTTCAGCACTTAATTTCAACATGACATTTACTTGTTCAGGAACTCATAGCATAAATAACTTGAATTACCCTTCAATCACATTACCAAATCTTGGATTGAATGCTGTTAATGTCACTCGCACTGTAACCAATGTTGGGCCACCAAGTACATATTTTGCAAAAGCACAATTACCTGGATATAAAATTGTTGTTGTACCAAATTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGACATTCCAAGTTATTGTGCAAGCAACAAGTGTGACTCCACGAAGGAAATACCAATTTGGGGAACTACGATGGACAAATGGAAAACACATTGTAATGAGTCCCGTTACTGTTCGGCGCAAATGA

Protein sequence

>MS.gene84585.t1

MKPHALKGTSTESGTKIRLSQAKTLYRRKPAPVMASFSSRGPNQVQPSILKPDVTAPGVNILAAYSLFASASNLITDIRRGFPYNVLQGTSMSCPHVVGTAGLIKTLHPNWSPAAIKSAIMTTASTRDNTNNPIRDAFDKTLANPFAYGSGHIQPNSAIDPGLVYDLGIKDYLNFLCAYGYNQQLISALNFNMTFTCSGTHSINNLNYPSITLPNLGLNAVNVTRTVTNVGPPSTYFAKAQLPGYKIVVVPNSLNFKKIGEKKTFQVIVQATSVTPRRKYQFGELRWTNGKHIVMSPVTVRRK