Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84948.t1 | AFK34428.1 | 98.5 | 66 | 1 | 0 | 1 | 66 | 101 | 166 | 3.00E-31 | 144.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84948.t1 | Q38909 | 78.4 | 74 | 14 | 1 | 1 | 72 | 101 | 174 | 4.9e-30 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84948.t1 | G8A358 | 98.5 | 66 | 1 | 0 | 1 | 66 | 101 | 166 | 2.2e-31 | 144.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene84948 | 0.805962 | 1.04E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene84948 | 0.81731 | 3.52E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene84948 | 0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene84948 | 0.820846 | 5.53E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene84948 | 0.800169 | 1.63E-48 | -1.69E-46 |
| MS.gene050787 | MS.gene84948 | 0.806158 | 9.42E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene84948 | 0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene05288 | MS.gene84948 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene84948 | 0.813601 | 2.36E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene84948 | 0.800861 | 1.18E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene84948 | 0.804949 | 1.69E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene84948 | 0.818947 | 1.50E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene84948 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene84948 | 0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene84948 | 0.804702 | 1.90E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene84948 | 0.830153 | 3.45E-55 | -1.69E-46 |
| MS.gene059609 | MS.gene84948 | 0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene84948 | 0.801458 | 8.92E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene84948 | 0.811249 | 7.70E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene84948 | 0.807768 | 4.30E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene84948 | 0.800503 | 1.40E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene84948 | 0.810554 | 1.09E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84948.t1 | MTR_1g033420 | 85.135 | 74 | 9 | 1 | 1 | 72 | 103 | 176 | 1.29e-39 | 133 |
| MS.gene84948.t1 | MTR_5g029100 | 66.216 | 74 | 23 | 1 | 1 | 72 | 81 | 154 | 2.09e-29 | 106 |
| MS.gene84948.t1 | MTR_5g029100 | 69.697 | 66 | 20 | 0 | 1 | 66 | 112 | 177 | 6.49e-29 | 105 |
| MS.gene84948.t1 | MTR_8g090100 | 63.492 | 63 | 21 | 1 | 4 | 66 | 97 | 157 | 3.36e-23 | 90.1 |
| MS.gene84948.t1 | MTR_8g064180 | 53.846 | 65 | 30 | 0 | 2 | 66 | 117 | 181 | 1.44e-21 | 85.9 |
| MS.gene84948.t1 | MTR_4g045853 | 53.247 | 77 | 30 | 3 | 5 | 78 | 96 | 169 | 2.73e-20 | 82.0 |
| MS.gene84948.t1 | MTR_2g089140 | 50.000 | 76 | 34 | 2 | 5 | 78 | 94 | 167 | 3.53e-20 | 81.6 |
| MS.gene84948.t1 | MTR_2g089140 | 50.000 | 76 | 34 | 2 | 5 | 78 | 31 | 104 | 4.88e-20 | 80.5 |
| MS.gene84948.t1 | MTR_4g057450 | 55.263 | 76 | 29 | 2 | 2 | 72 | 119 | 194 | 7.55e-20 | 80.9 |
| MS.gene84948.t1 | MTR_2g095800 | 55.882 | 68 | 27 | 1 | 2 | 66 | 123 | 190 | 1.53e-19 | 80.5 |
| MS.gene84948.t1 | MTR_4g128570 | 50.649 | 77 | 34 | 2 | 5 | 79 | 102 | 176 | 7.08e-19 | 78.2 |
| MS.gene84948.t1 | MTR_4g097700 | 52.000 | 75 | 32 | 2 | 7 | 79 | 143 | 215 | 1.23e-18 | 78.2 |
| MS.gene84948.t1 | MTR_8g102220 | 46.250 | 80 | 39 | 2 | 6 | 83 | 101 | 178 | 1.35e-18 | 77.4 |
| MS.gene84948.t1 | MTR_1g105495 | 53.623 | 69 | 30 | 1 | 7 | 75 | 111 | 177 | 1.72e-18 | 77.4 |
| MS.gene84948.t1 | MTR_1g105900 | 50.685 | 73 | 32 | 2 | 3 | 73 | 103 | 173 | 1.82e-18 | 77.4 |
| MS.gene84948.t1 | MTR_4g097640 | 52.000 | 75 | 32 | 2 | 7 | 79 | 106 | 178 | 1.89e-18 | 77.0 |
| MS.gene84948.t1 | MTR_4g097670 | 52.000 | 75 | 32 | 2 | 7 | 79 | 106 | 178 | 1.89e-18 | 77.0 |
| MS.gene84948.t1 | MTR_8g013055 | 52.113 | 71 | 30 | 2 | 5 | 73 | 102 | 170 | 5.26e-18 | 75.9 |
| MS.gene84948.t1 | MTR_4g126920 | 50.725 | 69 | 30 | 2 | 6 | 72 | 97 | 163 | 1.12e-17 | 75.1 |
| MS.gene84948.t1 | MTR_4g128580 | 49.367 | 79 | 36 | 2 | 7 | 83 | 99 | 175 | 1.49e-17 | 74.7 |
| MS.gene84948.t1 | MTR_7g093530 | 49.367 | 79 | 36 | 2 | 7 | 83 | 97 | 173 | 1.78e-17 | 74.3 |
| MS.gene84948.t1 | MTR_4g128590 | 52.941 | 68 | 28 | 2 | 7 | 72 | 88 | 153 | 1.81e-17 | 74.3 |
| MS.gene84948.t1 | MTR_5g091730 | 56.667 | 60 | 24 | 1 | 6 | 65 | 100 | 157 | 3.89e-17 | 73.6 |
| MS.gene84948.t1 | MTR_7g102260 | 51.389 | 72 | 30 | 2 | 6 | 72 | 110 | 181 | 6.35e-17 | 73.2 |
| MS.gene84948.t1 | MTR_3g084620 | 45.000 | 80 | 40 | 2 | 6 | 83 | 100 | 177 | 8.81e-17 | 72.4 |
| MS.gene84948.t1 | MTR_3g084630 | 45.000 | 80 | 40 | 2 | 6 | 83 | 100 | 177 | 9.18e-17 | 72.4 |
| MS.gene84948.t1 | MTR_7g084770 | 52.857 | 70 | 29 | 2 | 6 | 73 | 104 | 171 | 1.06e-16 | 72.4 |
| MS.gene84948.t1 | MTR_7g084760 | 52.857 | 70 | 29 | 2 | 6 | 73 | 104 | 171 | 1.06e-16 | 72.4 |
| MS.gene84948.t1 | MTR_3g089540 | 47.500 | 80 | 38 | 2 | 6 | 83 | 102 | 179 | 1.74e-16 | 72.0 |
| MS.gene84948.t1 | MTR_7g056090 | 55.556 | 63 | 25 | 2 | 4 | 66 | 103 | 162 | 2.03e-16 | 71.6 |
| MS.gene84948.t1 | MTR_4g128410 | 48.101 | 79 | 37 | 2 | 7 | 83 | 98 | 174 | 2.11e-16 | 71.6 |
| MS.gene84948.t1 | MTR_8g081040 | 45.000 | 80 | 40 | 2 | 6 | 83 | 103 | 180 | 2.82e-16 | 71.2 |
| MS.gene84948.t1 | MTR_7g084750 | 49.296 | 71 | 32 | 2 | 5 | 73 | 103 | 171 | 3.11e-16 | 71.2 |
| MS.gene84948.t1 | MTR_6g088320 | 47.143 | 70 | 33 | 2 | 6 | 73 | 96 | 163 | 5.46e-16 | 70.5 |
| MS.gene84948.t1 | MTR_2g038860 | 46.250 | 80 | 39 | 2 | 6 | 83 | 98 | 175 | 6.48e-16 | 70.5 |
| MS.gene84948.t1 | MTR_2g038705 | 46.250 | 80 | 39 | 2 | 6 | 83 | 98 | 175 | 6.48e-16 | 70.5 |
| MS.gene84948.t1 | MTR_6g033085 | 50.000 | 70 | 31 | 2 | 6 | 73 | 104 | 171 | 7.50e-16 | 70.1 |
| MS.gene84948.t1 | MTR_1g063020 | 51.562 | 64 | 28 | 1 | 6 | 66 | 113 | 176 | 8.33e-16 | 70.1 |
| MS.gene84948.t1 | MTR_6g033055 | 50.000 | 70 | 31 | 2 | 6 | 73 | 104 | 171 | 1.15e-15 | 69.7 |
| MS.gene84948.t1 | MTR_8g102910 | 47.143 | 70 | 33 | 2 | 6 | 73 | 92 | 159 | 1.45e-15 | 69.3 |
| MS.gene84948.t1 | MTR_4g128400 | 44.304 | 79 | 40 | 2 | 7 | 83 | 101 | 177 | 1.10e-14 | 67.0 |
| MS.gene84948.t1 | MTR_2g049030 | 48.571 | 70 | 31 | 3 | 7 | 73 | 101 | 168 | 8.23e-14 | 64.7 |
| MS.gene84948.t1 | MTR_2g049130 | 43.478 | 69 | 35 | 2 | 7 | 73 | 103 | 169 | 1.57e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84948.t1 | AT1G14720 | 78.378 | 74 | 14 | 1 | 1 | 72 | 101 | 174 | 4.22e-37 | 127 |
| MS.gene84948.t1 | AT2G01850 | 75.309 | 81 | 17 | 2 | 1 | 78 | 101 | 181 | 1.22e-35 | 123 |
| MS.gene84948.t1 | AT1G32170 | 64.198 | 81 | 27 | 1 | 1 | 79 | 102 | 182 | 1.45e-30 | 110 |
| MS.gene84948.t1 | AT4G18990 | 64.865 | 74 | 24 | 1 | 1 | 72 | 36 | 109 | 1.53e-29 | 106 |
| MS.gene84948.t1 | AT4G18990 | 64.865 | 74 | 24 | 1 | 1 | 72 | 110 | 183 | 1.14e-28 | 105 |
| MS.gene84948.t1 | AT1G10550 | 55.385 | 65 | 29 | 0 | 2 | 66 | 112 | 176 | 4.69e-23 | 89.7 |
| MS.gene84948.t1 | AT2G14620 | 53.425 | 73 | 32 | 1 | 3 | 75 | 45 | 115 | 4.01e-20 | 80.9 |
| MS.gene84948.t1 | AT2G14620 | 53.425 | 73 | 32 | 1 | 3 | 75 | 56 | 126 | 4.30e-20 | 80.9 |
| MS.gene84948.t1 | AT2G14620 | 53.425 | 73 | 32 | 1 | 3 | 75 | 106 | 176 | 7.25e-20 | 81.3 |
| MS.gene84948.t1 | AT4G03210 | 50.000 | 76 | 34 | 2 | 5 | 78 | 70 | 143 | 3.91e-19 | 78.6 |
| MS.gene84948.t1 | AT4G37800 | 49.367 | 79 | 36 | 2 | 7 | 83 | 108 | 184 | 4.12e-19 | 79.0 |
| MS.gene84948.t1 | AT4G03210 | 50.000 | 76 | 34 | 2 | 5 | 78 | 98 | 171 | 5.43e-19 | 78.6 |
| MS.gene84948.t1 | AT3G44990 | 50.000 | 74 | 32 | 2 | 5 | 73 | 111 | 184 | 1.50e-18 | 77.4 |
| MS.gene84948.t1 | AT1G11545 | 47.436 | 78 | 39 | 1 | 7 | 84 | 114 | 189 | 2.95e-18 | 77.0 |
| MS.gene84948.t1 | AT4G25810 | 52.000 | 75 | 32 | 2 | 7 | 79 | 99 | 171 | 3.92e-18 | 76.3 |
| MS.gene84948.t1 | AT2G36870 | 56.250 | 64 | 25 | 1 | 6 | 66 | 116 | 179 | 6.35e-18 | 75.9 |
| MS.gene84948.t1 | AT5G13870 | 52.857 | 70 | 29 | 2 | 6 | 73 | 104 | 171 | 6.70e-18 | 75.9 |
| MS.gene84948.t1 | AT5G13870 | 52.857 | 70 | 29 | 2 | 6 | 73 | 104 | 171 | 6.70e-18 | 75.9 |
| MS.gene84948.t1 | AT5G13870 | 52.857 | 70 | 29 | 2 | 6 | 73 | 104 | 171 | 6.70e-18 | 75.9 |
| MS.gene84948.t1 | AT5G48070 | 48.101 | 79 | 37 | 2 | 7 | 83 | 103 | 179 | 1.22e-17 | 75.1 |
| MS.gene84948.t1 | AT4G13090 | 54.286 | 70 | 28 | 2 | 6 | 73 | 104 | 171 | 1.28e-17 | 75.1 |
| MS.gene84948.t1 | AT4G30290 | 48.101 | 79 | 37 | 2 | 7 | 83 | 98 | 174 | 2.82e-17 | 73.9 |
| MS.gene84948.t1 | AT5G57560 | 48.684 | 76 | 35 | 2 | 7 | 80 | 96 | 169 | 3.84e-17 | 73.6 |
| MS.gene84948.t1 | AT3G23730 | 47.500 | 80 | 38 | 2 | 6 | 83 | 99 | 176 | 4.51e-17 | 73.6 |
| MS.gene84948.t1 | AT4G14130 | 47.500 | 80 | 38 | 2 | 6 | 83 | 100 | 177 | 5.38e-17 | 73.2 |
| MS.gene84948.t1 | AT2G36870 | 53.968 | 63 | 26 | 1 | 6 | 65 | 116 | 178 | 6.26e-17 | 71.2 |
| MS.gene84948.t1 | AT5G65730 | 48.529 | 68 | 31 | 2 | 7 | 72 | 109 | 174 | 1.00e-16 | 72.4 |
| MS.gene84948.t1 | AT1G65310 | 48.101 | 79 | 37 | 2 | 7 | 83 | 125 | 201 | 1.09e-16 | 72.8 |
| MS.gene84948.t1 | AT1G65310 | 48.101 | 79 | 37 | 2 | 7 | 83 | 103 | 179 | 1.12e-16 | 72.4 |
| MS.gene84948.t1 | AT5G57530 | 50.667 | 75 | 33 | 2 | 7 | 79 | 100 | 172 | 1.32e-16 | 72.0 |
| MS.gene84948.t1 | AT5G57550 | 53.333 | 60 | 26 | 1 | 7 | 66 | 103 | 160 | 1.68e-16 | 72.0 |
| MS.gene84948.t1 | AT4G30280 | 51.471 | 68 | 29 | 2 | 7 | 72 | 103 | 168 | 1.88e-16 | 71.6 |
| MS.gene84948.t1 | AT2G18800 | 52.941 | 68 | 28 | 2 | 7 | 72 | 101 | 166 | 2.72e-16 | 71.6 |
| MS.gene84948.t1 | AT5G57540 | 49.333 | 75 | 34 | 2 | 7 | 79 | 99 | 171 | 3.14e-16 | 71.2 |
| MS.gene84948.t1 | AT4G13080 | 50.000 | 70 | 30 | 3 | 6 | 73 | 111 | 177 | 5.36e-16 | 70.5 |
| MS.gene84948.t1 | AT3G25050 | 45.000 | 80 | 40 | 2 | 6 | 83 | 107 | 184 | 9.50e-16 | 70.1 |
| MS.gene84948.t1 | AT4G30270 | 53.333 | 60 | 26 | 1 | 7 | 66 | 97 | 154 | 1.13e-15 | 69.3 |
| MS.gene84948.t1 | AT2G06850 | 50.000 | 70 | 31 | 2 | 6 | 73 | 47 | 114 | 2.36e-15 | 68.2 |
| MS.gene84948.t1 | AT2G06850 | 50.000 | 70 | 31 | 2 | 6 | 73 | 107 | 174 | 2.68e-15 | 68.9 |
| MS.gene84948.t1 | AT4G28850 | 45.714 | 70 | 34 | 2 | 6 | 73 | 99 | 166 | 3.79e-15 | 68.2 |
| MS.gene84948.t1 | AT4G25820 | 50.725 | 69 | 30 | 2 | 7 | 73 | 103 | 169 | 1.36e-14 | 66.6 |
| MS.gene84948.t1 | AT3G48580 | 40.000 | 70 | 37 | 3 | 6 | 73 | 46 | 112 | 2.64e-11 | 57.0 |
| MS.gene84948.t1 | AT3G48580 | 40.000 | 70 | 37 | 3 | 6 | 73 | 105 | 171 | 5.55e-11 | 56.6 |
Find 22 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATTCAGACCAATGTTTA+TGG | 0.234371 | 1.3:-37011873 | MS.gene84948:CDS |
| CAAAGGCTTCCATGGTGATT+TGG | 0.307852 | 1.3:+37010963 | None:intergenic |
| ACAGATTTAAACAGATTTGA+TGG | 0.310159 | 1.3:-37011001 | MS.gene84948:intron |
| GAGAGGAAAGATATGGTCTT+TGG | 0.319574 | 1.3:-37011827 | MS.gene84948:CDS |
| GAAACATTAGAGGCAAAGAT+TGG | 0.421060 | 1.3:-37011896 | MS.gene84948:CDS |
| TTCATCAATACAGTATTCTC+TGG | 0.426009 | 1.3:-37011785 | MS.gene84948:CDS |
| AGCCTTTGAACAACCTGGTT+AGG | 0.459403 | 1.3:-37010948 | None:intergenic |
| TCTTTCCTCTCTGCCAATGC+TGG | 0.468353 | 1.3:+37011839 | None:intergenic |
| CAGACCAATGTTTATGGCAA+TGG | 0.496594 | 1.3:-37011867 | MS.gene84948:CDS |
| GTATTCTTTGGAACCTAACC+AGG | 0.498379 | 1.3:+37010935 | None:intergenic |
| ACTCAAAATCTATTTCATCA+TGG | 0.506747 | 1.3:+37011925 | None:intergenic |
| GGCAATGGAAGCACCAGCAT+TGG | 0.516287 | 1.3:-37011852 | MS.gene84948:CDS |
| AGGTTGTTCAAAGGCTTCCA+TGG | 0.521110 | 1.3:+37010955 | None:intergenic |
| TATTGATGAAAATCCTCAGC+AGG | 0.535202 | 1.3:+37011798 | None:intergenic |
| ACATTAGAGGCAAAGATTGG+AGG | 0.561664 | 1.3:-37011893 | MS.gene84948:CDS |
| GCTTCCATTGCCATAAACAT+TGG | 0.568127 | 1.3:+37011863 | None:intergenic |
| ATTGGCAGAGAGGAAAGATA+TGG | 0.574281 | 1.3:-37011834 | MS.gene84948:CDS |
| AACCTAACCAGGTTGTTCAA+AGG | 0.578288 | 1.3:+37010946 | None:intergenic |
| TCTTTGGTTTGATCCTGCTG+AGG | 0.596535 | 1.3:-37011811 | MS.gene84948:CDS |
| ATGGAAGCCTTTGAACAACC+TGG | 0.600912 | 1.3:-37010953 | MS.gene84948:CDS |
| AATCAAAGTCCAAATCACCA+TGG | 0.671373 | 1.3:-37010972 | MS.gene84948:CDS |
| AAGCACCAGCATTGGCAGAG+AGG | 0.671848 | 1.3:-37011844 | MS.gene84948:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATAGATTTTGAGTTTTT+GGG | - | chr1.3:37010970-37010989 | MS.gene84948:CDS | 20.0% |
| !!! | TGAAATAGATTTTGAGTTTT+TGG | - | chr1.3:37010969-37010988 | MS.gene84948:CDS | 20.0% |
| ! | AAAATTAGTTAAGAAGATGC+AGG | + | chr1.3:37011228-37011247 | None:intergenic | 25.0% |
| ! | ACAGATTTAAACAGATTTGA+TGG | - | chr1.3:37011887-37011906 | MS.gene84948:CDS | 25.0% |
| ! | ACTCAAAATCTATTTCATCA+TGG | + | chr1.3:37010966-37010985 | None:intergenic | 25.0% |
| ! | AGATGCAAGTAAATATTTGT+CGG | + | chr1.3:37011698-37011717 | None:intergenic | 25.0% |
| ! | ATTTAGTTGTTTATCCAAAC+AGG | + | chr1.3:37011477-37011496 | None:intergenic | 25.0% |
| ! | CATACATACAATACAATATC+TGG | - | chr1.3:37011168-37011187 | MS.gene84948:intron | 25.0% |
| ! | GATATTGTATTGTATGTATG+AGG | + | chr1.3:37011168-37011187 | None:intergenic | 25.0% |
| ! | TAAGTTACTACCTATAAACA+AGG | + | chr1.3:37011331-37011350 | None:intergenic | 25.0% |
| ! | TATTGTAAGGCTATTATGTA+AGG | - | chr1.3:37011846-37011865 | MS.gene84948:CDS | 25.0% |
| ! | TTTAGTTGTTTATCCAAACA+GGG | + | chr1.3:37011476-37011495 | None:intergenic | 25.0% |
| ! | TTTGGTATGTAAAAATCCAA+AGG | + | chr1.3:37011198-37011217 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAATCAGCTTA+TGG | - | chr1.3:37011633-37011652 | MS.gene84948:intron | 25.0% |
| !! | ATCATCACTTAAGTATTGTA+AGG | - | chr1.3:37011833-37011852 | MS.gene84948:CDS | 25.0% |
| CAAGGAATCTATATATGACT+TGG | + | chr1.3:37011426-37011445 | None:intergenic | 30.0% | |
| GATGCAAGTAAATATTTGTC+GGG | + | chr1.3:37011697-37011716 | None:intergenic | 30.0% | |
| TGAAGATGCTTAAAATCTGT+CGG | - | chr1.3:37011730-37011749 | MS.gene84948:intron | 30.0% | |
| TTCATCAATACAGTATTCTC+TGG | - | chr1.3:37011103-37011122 | MS.gene84948:intron | 30.0% | |
| ! | CAATAACGATCCTTGTTTAT+AGG | - | chr1.3:37011318-37011337 | MS.gene84948:intron | 30.0% |
| !!! | ATCTAGCTGTTTTTTGTTGT+TGG | - | chr1.3:37011351-37011370 | MS.gene84948:intron | 30.0% |
| !!! | TCTAGCTGTTTTTTGTTGTT+GGG | - | chr1.3:37011352-37011371 | MS.gene84948:intron | 30.0% |
| AAGGATCGTTATTGCATGAA+AGG | + | chr1.3:37011312-37011331 | None:intergenic | 35.0% | |
| AATCAAAGTCCAAATCACCA+TGG | - | chr1.3:37011916-37011935 | MS.gene84948:CDS | 35.0% | |
| AGGATTCAGACCAATGTTTA+TGG | - | chr1.3:37011015-37011034 | MS.gene84948:intron | 35.0% | |
| ATTTGATTATAAGCCCCTGA+TGG | + | chr1.3:37011815-37011834 | None:intergenic | 35.0% | |
| CAACCAATCAAACATTCACA+CGG | + | chr1.3:37011770-37011789 | None:intergenic | 35.0% | |
| GAAACATTAGAGGCAAAGAT+TGG | - | chr1.3:37010992-37011011 | MS.gene84948:intron | 35.0% | |
| GAAAGGCAAAAGTGAAATGA+TGG | + | chr1.3:37011295-37011314 | None:intergenic | 35.0% | |
| GAAGATGCAGGTATATTCTT+TGG | + | chr1.3:37011216-37011235 | None:intergenic | 35.0% | |
| GTACAACCTATTAAAACAGC+TGG | + | chr1.3:37011598-37011617 | None:intergenic | 35.0% | |
| TAAATATTTGTCGGGCTATC+TGG | + | chr1.3:37011689-37011708 | None:intergenic | 35.0% | |
| TATTGATGAAAATCCTCAGC+AGG | + | chr1.3:37011093-37011112 | None:intergenic | 35.0% | |
| TTACCGTGTGAATGTTTGAT+TGG | - | chr1.3:37011764-37011783 | MS.gene84948:intron | 35.0% | |
| ! | TACAATATCTGGTTCACCTT+TGG | - | chr1.3:37011179-37011198 | MS.gene84948:intron | 35.0% |
| !! | GAGTTTTTGGGAAACATTAG+AGG | - | chr1.3:37010982-37011001 | MS.gene84948:CDS | 35.0% |
| !!! | AAGCTACCAGCTGTTTTAAT+AGG | - | chr1.3:37011589-37011608 | MS.gene84948:intron | 35.0% |
| AATCCATATCCTACCATCAG+GGG | - | chr1.3:37011799-37011818 | MS.gene84948:CDS | 40.0% | |
| ACATTAGAGGCAAAGATTGG+AGG | - | chr1.3:37010995-37011014 | MS.gene84948:intron | 40.0% | |
| ATTGGCAGAGAGGAAAGATA+TGG | - | chr1.3:37011054-37011073 | MS.gene84948:intron | 40.0% | |
| CAGACCAATGTTTATGGCAA+TGG | - | chr1.3:37011021-37011040 | MS.gene84948:intron | 40.0% | |
| CGTGTGAATGTTTGATTGGT+TGG | - | chr1.3:37011768-37011787 | MS.gene84948:CDS | 40.0% | |
| GAATCCATATCCTACCATCA+GGG | - | chr1.3:37011798-37011817 | MS.gene84948:CDS | 40.0% | |
| GAGAGGAAAGATATGGTCTT+TGG | - | chr1.3:37011061-37011080 | MS.gene84948:intron | 40.0% | |
| GCTTCCATTGCCATAAACAT+TGG | + | chr1.3:37011028-37011047 | None:intergenic | 40.0% | |
| ! | ATGTTTGATTGGTTGGCAGT+AGG | - | chr1.3:37011775-37011794 | MS.gene84948:CDS | 40.0% |
| ! | TGTTTGATTGGTTGGCAGTA+GGG | - | chr1.3:37011776-37011795 | MS.gene84948:CDS | 40.0% |
| AACAGGGCAAATCGAATGTG+TGG | + | chr1.3:37011460-37011479 | None:intergenic | 45.0% | |
| AGGTTGTACTTGCGAGCTTA+CGG | - | chr1.3:37011609-37011628 | MS.gene84948:intron | 45.0% | |
| AGGTTGTTCAAAGGCTTCCA+TGG | + | chr1.3:37011936-37011955 | None:intergenic | 45.0% | |
| ATGGAAGCCTTTGAACAACC+TGG | - | chr1.3:37011935-37011954 | MS.gene84948:CDS | 45.0% | |
| CAAAGGCTTCCATGGTGATT+TGG | + | chr1.3:37011928-37011947 | None:intergenic | 45.0% | |
| GATTATAAGCCCCTGATGGT+AGG | + | chr1.3:37011811-37011830 | None:intergenic | 45.0% | |
| GGAATCCATATCCTACCATC+AGG | - | chr1.3:37011797-37011816 | MS.gene84948:CDS | 45.0% | |
| ! | CACATTCGATTTGCCCTGTT+TGG | - | chr1.3:37011460-37011479 | MS.gene84948:intron | 45.0% |
| !! | TCTTTGGTTTGATCCTGCTG+AGG | - | chr1.3:37011077-37011096 | MS.gene84948:intron | 45.0% |
| AAGCCCCTGATGGTAGGATA+TGG | + | chr1.3:37011805-37011824 | None:intergenic | 50.0% | |
| TCTTTCCTCTCTGCCAATGC+TGG | + | chr1.3:37011052-37011071 | None:intergenic | 50.0% | |
| TGTGTGGTCTCTTGACAGCA+AGG | + | chr1.3:37011444-37011463 | None:intergenic | 50.0% | |
| !! | AAGCACCAGCATTGGCAGAG+AGG | - | chr1.3:37011044-37011063 | MS.gene84948:intron | 55.0% |
| !! | GGCAATGGAAGCACCAGCAT+TGG | - | chr1.3:37011036-37011055 | MS.gene84948:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 37010949 | 37011961 | 37010949 | ID=MS.gene84948 |
| chr1.3 | mRNA | 37010949 | 37011961 | 37010949 | ID=MS.gene84948.t1;Parent=MS.gene84948 |
| chr1.3 | exon | 37011768 | 37011961 | 37011768 | ID=MS.gene84948.t1.exon1;Parent=MS.gene84948.t1 |
| chr1.3 | CDS | 37011768 | 37011961 | 37011768 | ID=cds.MS.gene84948.t1;Parent=MS.gene84948.t1 |
| chr1.3 | exon | 37010949 | 37011009 | 37010949 | ID=MS.gene84948.t1.exon2;Parent=MS.gene84948.t1 |
| chr1.3 | CDS | 37010949 | 37011009 | 37010949 | ID=cds.MS.gene84948.t1;Parent=MS.gene84948.t1 |
| Gene Sequence |
| Protein sequence |
