Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85056.t1 | XP_013455380.1 | 95.2 | 314 | 10 | 3 | 1 | 313 | 1 | 310 | 6.90E-153 | 550.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85056.t1 | P25441 | 30.9 | 152 | 80 | 4 | 176 | 303 | 272 | 422 | 1.7e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85056.t1 | A0A072UJ26 | 95.2 | 314 | 10 | 3 | 1 | 313 | 1 | 310 | 4.9e-153 | 550.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene85056 | 0.810522 | 1.11E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene85056 | 0.801375 | 9.27E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene85056 | 0.811383 | 7.20E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene85056 | 0.824617 | 7.32E-54 | -1.69E-46 |
| MS.gene049850 | MS.gene85056 | 0.823984 | 1.03E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene85056 | 0.822785 | 1.97E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene85056 | 0.825529 | 4.46E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene85056 | 0.803152 | 4.00E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene85056 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene85056 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene85056 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene052323 | MS.gene85056 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene85056 | 0.803249 | 3.81E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene85056 | 0.801485 | 8.81E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene85056 | 0.806854 | 6.72E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene85056 | 0.801945 | 7.09E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene85056 | 0.828049 | 1.12E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene85056 | 0.80011 | 1.68E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene85056 | 0.800428 | 1.45E-48 | -1.69E-46 |
| MS.gene055512 | MS.gene85056 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene85056 | 0.815901 | 7.29E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene85056 | 0.835983 | 1.22E-56 | -1.69E-46 |
| MS.gene057693 | MS.gene85056 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene85056 | 0.813606 | 2.35E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene85056 | 0.812082 | 5.07E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene85056 | 0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene85056 | 0.814638 | 1.39E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene85056 | 0.800356 | 1.50E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene85056 | 0.816796 | 4.60E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene85056 | 0.815913 | 7.25E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85056.t1 | MTR_4g036455 | 95.223 | 314 | 10 | 3 | 1 | 313 | 1 | 310 | 0.0 | 587 |
| MS.gene85056.t1 | MTR_1g080300 | 38.854 | 314 | 141 | 12 | 2 | 305 | 6 | 278 | 1.12e-45 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85056.t1 | AT5G09380 | 39.375 | 320 | 137 | 14 | 1 | 311 | 1 | 272 | 7.79e-49 | 164 |
| MS.gene85056.t1 | AT4G25180 | 40.584 | 308 | 155 | 12 | 5 | 306 | 15 | 300 | 1.29e-48 | 165 |
| MS.gene85056.t1 | AT5G09380 | 47.668 | 193 | 83 | 7 | 124 | 311 | 37 | 216 | 7.10e-47 | 157 |
| MS.gene85056.t1 | AT5G09380 | 37.269 | 271 | 117 | 12 | 1 | 264 | 1 | 225 | 3.38e-33 | 122 |
Find 66 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGATAAGATAGAATT+TGG | 0.127439 | 4.2:-67518885 | MS.gene85056:CDS |
| TTTCTCATCAGCAGAAAATT+TGG | 0.182176 | 4.2:+67519483 | None:intergenic |
| GGAGCTTCCGAGTGGATATA+TGG | 0.289404 | 4.2:-67518561 | MS.gene85056:CDS |
| CCAGAATTGGGCTTCCTTAG+AGG | 0.292912 | 4.2:+67519232 | None:intergenic |
| AGTTCGTGTACGTAGCTTAT+TGG | 0.293904 | 4.2:-67521188 | MS.gene85056:intron |
| CTTAATTCCGCAGCAGAACT+TGG | 0.309638 | 4.2:-67518825 | MS.gene85056:CDS |
| TTCTTGATAAGATAGAATTT+GGG | 0.318084 | 4.2:-67518884 | MS.gene85056:CDS |
| CCTCTAAGGAAGCCCAATTC+TGG | 0.328445 | 4.2:-67519232 | MS.gene85056:CDS |
| AAATAGTTTGTTACCTTTCG+TGG | 0.335476 | 4.2:+67521462 | None:intergenic |
| CAAACCTGGATCTCCAGAAT+TGG | 0.341119 | 4.2:+67519219 | None:intergenic |
| ATCTTGATCCAGTATAGTTT+TGG | 0.341764 | 4.2:+67518273 | None:intergenic |
| TACTTCTGTGATAGATGTTA+TGG | 0.351570 | 4.2:-67519416 | MS.gene85056:CDS |
| CGCAGCAGAACTTGGGCTCT+TGG | 0.353607 | 4.2:-67518817 | MS.gene85056:intron |
| ACCTTTCGTGGAGTTCTGTT+TGG | 0.354870 | 4.2:+67521474 | None:intergenic |
| GTTTGGATCTTTCTTATCCA+TGG | 0.365988 | 4.2:+67521491 | None:intergenic |
| AGATCAATGGCATCAATATC+AGG | 0.368015 | 4.2:+67518172 | None:intergenic |
| AGTAAAGGGAAGGAGAAAAT+TGG | 0.372837 | 4.2:-67518629 | MS.gene85056:CDS |
| TCCAGGTACCAAAACTATAC+TGG | 0.389507 | 4.2:-67518281 | MS.gene85056:CDS |
| TCCTTCCCTTTACTGTTCAC+TGG | 0.390404 | 4.2:+67518638 | None:intergenic |
| TCACTTTCGCTGAGATCATT+TGG | 0.391836 | 4.2:-67519544 | MS.gene85056:CDS |
| ATCCTACTACTCTTCCTCTA+AGG | 0.415975 | 4.2:-67519246 | MS.gene85056:CDS |
| TGCCTTTGCCGATACTTTCG+AGG | 0.425051 | 4.2:+67518604 | None:intergenic |
| GGATAGTTTGAGTTTGTGTC+AGG | 0.427676 | 4.2:+67519265 | None:intergenic |
| CAGCTCAAGTTTATTCCAAA+GGG | 0.441221 | 4.2:-67521365 | MS.gene85056:CDS |
| TCAAGCCAGTGAACAGTAAA+GGG | 0.451980 | 4.2:-67518643 | MS.gene85056:CDS |
| GCCATTGATCTTGAATCCAT+TGG | 0.463045 | 4.2:-67518160 | MS.gene85056:CDS |
| TTTGGCAGCGGCACAGGTAA+TGG | 0.469021 | 4.2:-67519526 | MS.gene85056:CDS |
| AAACCTGGATCTCCAGAATT+GGG | 0.469834 | 4.2:+67519220 | None:intergenic |
| AGATCATTTGGCAGCGGCAC+AGG | 0.470441 | 4.2:-67519532 | MS.gene85056:CDS |
| AACACATTCTTCAACTGCTA+TGG | 0.470804 | 4.2:-67519452 | MS.gene85056:CDS |
| AAGCCCAATTCTGGAGATCC+AGG | 0.473812 | 4.2:-67519223 | MS.gene85056:intron |
| TTTCTCATACAGGTGTCTCC+AGG | 0.481978 | 4.2:-67518298 | MS.gene85056:intron |
| GGGTGGAACTTACATCATAC+AGG | 0.486199 | 4.2:+67518486 | None:intergenic |
| TTCCTTAGAGGAAGAGTAGT+AGG | 0.492693 | 4.2:+67519244 | None:intergenic |
| TCCAATGGATTCAAGATCAA+TGG | 0.494630 | 4.2:+67518159 | None:intergenic |
| GTCAAGCCAGTGAACAGTAA+AGG | 0.512962 | 4.2:-67518644 | MS.gene85056:CDS |
| TGGATATATGGGCAAAATGC+AGG | 0.520605 | 4.2:-67518549 | MS.gene85056:CDS |
| ACAGCTCAAGTTTATTCCAA+AGG | 0.522946 | 4.2:-67521366 | MS.gene85056:intron |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 4.2:-67520009 | MS.gene85056:intron |
| AAACTACAGTGTTGTTGGGA+AGG | 0.531862 | 4.2:-67518224 | MS.gene85056:CDS |
| AGGAAATGCATCTCGCGCAC+TGG | 0.533643 | 4.2:+67519576 | None:intergenic |
| GAGCTTCCGAGTGGATATAT+GGG | 0.538050 | 4.2:-67518560 | MS.gene85056:CDS |
| TTAATTCCGCAGCAGAACTT+GGG | 0.538505 | 4.2:-67518824 | MS.gene85056:CDS |
| CTGTTCACTGGCTTGACACA+AGG | 0.545802 | 4.2:+67518650 | None:intergenic |
| AATTGGTACCTCGAAAGTAT+CGG | 0.567800 | 4.2:-67518612 | MS.gene85056:CDS |
| GCCAGTGAACAGTAAAGGGA+AGG | 0.568840 | 4.2:-67518639 | MS.gene85056:CDS |
| TCTTGATAAGATAGAATTTG+GGG | 0.581506 | 4.2:-67518883 | MS.gene85056:CDS |
| GAAGGTTACAGTTGACGCAA+AGG | 0.581529 | 4.2:-67518206 | MS.gene85056:CDS |
| GCCACTGATGTGAAATATGA+TGG | 0.589781 | 4.2:-67518855 | MS.gene85056:CDS |
| ATGAAGACTACACGGAACCA+TGG | 0.591028 | 4.2:-67519378 | MS.gene85056:CDS |
| CACTGATGATGAAGACTACA+CGG | 0.591091 | 4.2:-67519386 | MS.gene85056:CDS |
| TTGACACAAGGCAGAACAGT+AGG | 0.592164 | 4.2:+67518662 | None:intergenic |
| CGTGTAGTCTTCATCATCAG+TGG | 0.592625 | 4.2:+67519387 | None:intergenic |
| ACCATCATATTTCACATCAG+TGG | 0.608501 | 4.2:+67518854 | None:intergenic |
| TCCAAACAGAACTCCACGAA+AGG | 0.614338 | 4.2:-67521475 | MS.gene85056:intron |
| TCGCTGAGATCATTTGGCAG+CGG | 0.614945 | 4.2:-67519538 | MS.gene85056:CDS |
| TGAAGACTACACGGAACCAT+GGG | 0.628361 | 4.2:-67519377 | MS.gene85056:intron |
| TGATAAGATAGAATTTGGGG+AGG | 0.632493 | 4.2:-67518880 | MS.gene85056:CDS |
| AGCGAAAGTGACGAATCTCT+AGG | 0.647046 | 4.2:+67519556 | None:intergenic |
| CAAGAGCCCAAGTTCTGCTG+CGG | 0.648219 | 4.2:+67518818 | None:intergenic |
| TACCTCGAAAGTATCGGCAA+AGG | 0.649098 | 4.2:-67518606 | MS.gene85056:CDS |
| ACAGGTAATGGTGAAAGCAG+TGG | 0.650338 | 4.2:-67519514 | MS.gene85056:CDS |
| AAAATGCAGGTCTATAAGAG+TGG | 0.654564 | 4.2:-67518536 | MS.gene85056:CDS |
| AACTTGTTGGAGCTTCCGAG+TGG | 0.660506 | 4.2:-67518569 | MS.gene85056:CDS |
| GGTGGAACTTACATCATACA+GGG | 0.675680 | 4.2:+67518487 | None:intergenic |
| AGCTTAAAGAAAATCAACTG+TGG | 0.715988 | 4.2:+67518686 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAGTTTTATTCT+TGG | - | chr4.2:67518795-67518814 | MS.gene85056:intron | 10.0% |
| !!! | TCTATTTTTGAAATAATAAT+CGG | - | chr4.2:67518354-67518373 | MS.gene85056:intron | 10.0% |
| !!! | TTTTTTTATATGGTAAAAAT+TGG | - | chr4.2:67518833-67518852 | MS.gene85056:CDS | 10.0% |
| !! | AAATGAAATCTTTATATCTT+TGG | + | chr4.2:67518902-67518921 | None:intergenic | 15.0% |
| !! | AATTTGACATAAGAAATTTA+TGG | + | chr4.2:67518971-67518990 | None:intergenic | 15.0% |
| !! | CAATATATAGATAAAACAAA+TGG | + | chr4.2:67519622-67519641 | None:intergenic | 15.0% |
| !! | TCAATAATCAAAGTTAAAAA+TGG | + | chr4.2:67521302-67521321 | None:intergenic | 15.0% |
| !! | TTAATAGAAAATGTTATAGT+AGG | - | chr4.2:67519129-67519148 | MS.gene85056:intron | 15.0% |
| !!! | ACATTGTTTTTTTTCAAATT+TGG | - | chr4.2:67518994-67519013 | MS.gene85056:intron | 15.0% |
| !!! | AGATATAAAGATTTCATTTT+TGG | - | chr4.2:67518903-67518922 | MS.gene85056:intron | 15.0% |
| !!! | ATGTACAAATTATTTTATTG+TGG | - | chr4.2:67518713-67518732 | MS.gene85056:intron | 15.0% |
| !!! | TTAATATAATTTGTGTTTCT+TGG | - | chr4.2:67518747-67518766 | MS.gene85056:intron | 15.0% |
| !!! | TTAGGAGAATTTTTTTTATA+TGG | - | chr4.2:67518823-67518842 | MS.gene85056:CDS | 15.0% |
| !!! | TTTGATATATTTTAATAGCT+TGG | + | chr4.2:67519534-67519553 | None:intergenic | 15.0% |
| !! | ATCATATAACTCACTATAAT+AGG | - | chr4.2:67519249-67519268 | MS.gene85056:CDS | 20.0% |
| !! | ATTCTTGATAAGATAGAATT+TGG | - | chr4.2:67520757-67520776 | MS.gene85056:intron | 20.0% |
| !! | ATTTCGATATGATAATACAT+AGG | - | chr4.2:67520904-67520923 | MS.gene85056:intron | 20.0% |
| !! | CTAATGTCTAAATACAAAAA+TGG | + | chr4.2:67519888-67519907 | None:intergenic | 20.0% |
| !! | GCTAACTAAAATTACTTAAA+AGG | + | chr4.2:67519025-67519044 | None:intergenic | 20.0% |
| !! | TACTTCATTCAGTAAATATA+TGG | + | chr4.2:67521188-67521207 | None:intergenic | 20.0% |
| !! | TATAATACTATGATAGCATT+TGG | + | chr4.2:67519506-67519525 | None:intergenic | 20.0% |
| !! | TCAGTAAATATATGGTAAAT+GGG | + | chr4.2:67521180-67521199 | None:intergenic | 20.0% |
| !! | TGGAATATATTAACAAGATA+TGG | + | chr4.2:67519421-67519440 | None:intergenic | 20.0% |
| !! | TTCAGTAAATATATGGTAAA+TGG | + | chr4.2:67521181-67521200 | None:intergenic | 20.0% |
| !! | TTCTTGATAAGATAGAATTT+GGG | - | chr4.2:67520758-67520777 | MS.gene85056:intron | 20.0% |
| !!! | AAAAAAGTTATCCCATATTT+TGG | - | chr4.2:67521268-67521287 | MS.gene85056:intron | 20.0% |
| !!! | AAAATATGGGATAACTTTTT+TGG | + | chr4.2:67521269-67521288 | None:intergenic | 20.0% |
| !!! | AAATATGGGATAACTTTTTT+GGG | + | chr4.2:67521268-67521287 | None:intergenic | 20.0% |
| !!! | AAATCGCAAATACATTTTTA+CGG | + | chr4.2:67519288-67519307 | None:intergenic | 20.0% |
| !!! | AATAATGTTTTGCAAATCTA+AGG | + | chr4.2:67519697-67519716 | None:intergenic | 20.0% |
| !!! | ACAGGTAATTGAAATTTTTA+AGG | - | chr4.2:67518934-67518953 | MS.gene85056:intron | 20.0% |
| !!! | ATGTCTTTTGATATATAAAG+TGG | + | chr4.2:67519735-67519754 | None:intergenic | 20.0% |
| !!! | CAAAACAAATAAAGCTTTTA+AGG | - | chr4.2:67520451-67520470 | MS.gene85056:intron | 20.0% |
| !!! | GAAAAGTGTTGAATAAAAAT+CGG | - | chr4.2:67518639-67518658 | MS.gene85056:CDS | 20.0% |
| !!! | GTTTTATTCTTGGTTAATTT+AGG | - | chr4.2:67518805-67518824 | MS.gene85056:intron | 20.0% |
| !!! | TTATGCGTTGATTTTTAATA+TGG | - | chr4.2:67520729-67520748 | MS.gene85056:intron | 20.0% |
| !!! | TTGTTTTATCTATATATTGC+AGG | - | chr4.2:67519623-67519642 | MS.gene85056:intron | 20.0% |
| !!! | TTTGCTGTTGATTAAATTTT+CGG | + | chr4.2:67519071-67519090 | None:intergenic | 20.0% |
| ! | AAAATGTTATAGTAGGTGTT+TGG | - | chr4.2:67519136-67519155 | MS.gene85056:intron | 25.0% |
| ! | AACCAAATATTATATGGAAC+CGG | + | chr4.2:67520696-67520715 | None:intergenic | 25.0% |
| ! | ATGGTACAATAACCAAAATA+TGG | + | chr4.2:67521283-67521302 | None:intergenic | 25.0% |
| ! | CAGTAAATATATGGTAAATG+GGG | + | chr4.2:67521179-67521198 | None:intergenic | 25.0% |
| ! | GAACTTCTTTGTAAAGAAAA+TGG | + | chr4.2:67519866-67519885 | None:intergenic | 25.0% |
| ! | GAATCACAATTAAACTAACT+TGG | + | chr4.2:67521211-67521230 | None:intergenic | 25.0% |
| ! | TATTTCATAGTTGTGATGTT+GGG | - | chr4.2:67519777-67519796 | MS.gene85056:intron | 25.0% |
| ! | TCTTGATAAGATAGAATTTG+GGG | - | chr4.2:67520759-67520778 | MS.gene85056:intron | 25.0% |
| ! | TGGCAAAACCAAATATTATA+TGG | + | chr4.2:67520702-67520721 | None:intergenic | 25.0% |
| ! | TGGTACAATAACCAAAATAT+GGG | + | chr4.2:67521282-67521301 | None:intergenic | 25.0% |
| ! | TGTCTGATACATTACAAAAA+TGG | + | chr4.2:67519441-67519460 | None:intergenic | 25.0% |
| !! | AATCGCAAATACATTTTTAC+GGG | + | chr4.2:67519287-67519306 | None:intergenic | 25.0% |
| !! | TACATAGGAAATTTTTCTTC+AGG | - | chr4.2:67520919-67520938 | MS.gene85056:intron | 25.0% |
| !! | TGCAAATTTTAAACACCAAA+AGG | + | chr4.2:67520045-67520064 | None:intergenic | 25.0% |
| !! | TTGTAGCTTCTAAAAAATCA+CGG | + | chr4.2:67519379-67519398 | None:intergenic | 25.0% |
| !!! | AGTCAAAATCATTTTGATCT+TGG | - | chr4.2:67519906-67519925 | MS.gene85056:intron | 25.0% |
| !!! | ATTTGTTTTGTTTCTCATAC+AGG | - | chr4.2:67521334-67521353 | MS.gene85056:intron | 25.0% |
| !!! | ATTTTGGTTGTTTGAGATTT+GGG | + | chr4.2:67518307-67518326 | None:intergenic | 25.0% |
| !!! | GTTTCTAACACTTTTTTCTA+GGG | - | chr4.2:67520653-67520672 | MS.gene85056:intron | 25.0% |
| !!! | TCTAAAACACTTTTTCCTTT+TGG | - | chr4.2:67520027-67520046 | MS.gene85056:intron | 25.0% |
| !!! | TGTGTTTTTGACTTACATTT+TGG | + | chr4.2:67518323-67518342 | None:intergenic | 25.0% |
| !!! | TGTTTCTAACACTTTTTTCT+AGG | - | chr4.2:67520652-67520671 | MS.gene85056:intron | 25.0% |
| !!! | TTACATTGTTTTGCAACTTT+AGG | + | chr4.2:67519669-67519688 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTATCAAACC+TGG | + | chr4.2:67520440-67520459 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTACAGTGAAGC+TGG | - | chr4.2:67518404-67518423 | MS.gene85056:intron | 25.0% |
| AAGAAAAACTACAGTGTTGT+TGG | - | chr4.2:67521413-67521432 | MS.gene85056:intron | 30.0% | |
| AGCTTAAAGAAAATCAACTG+TGG | + | chr4.2:67520959-67520978 | None:intergenic | 30.0% | |
| ATACTATGATAGCATTTGGT+AGG | + | chr4.2:67519502-67519521 | None:intergenic | 30.0% | |
| ATCAACAGCAAAAACATGAT+AGG | - | chr4.2:67519079-67519098 | MS.gene85056:intron | 30.0% | |
| ATTTCACTTAATGGTGTGTT+TGG | - | chr4.2:67519310-67519329 | MS.gene85056:intron | 30.0% | |
| CCAAATAGAATAGAGAATGT+CGG | - | chr4.2:67520609-67520628 | MS.gene85056:intron | 30.0% | |
| CTATTTCATAGTTGTGATGT+TGG | - | chr4.2:67519776-67519795 | MS.gene85056:intron | 30.0% | |
| GGAGCAGTCAAATTAAAAAT+AGG | - | chr4.2:67521127-67521146 | MS.gene85056:intron | 30.0% | |
| GGATATATATTAGCAATAGC+CGG | - | chr4.2:67520674-67520693 | MS.gene85056:intron | 30.0% | |
| TAAATATATGGTAAATGGGG+TGG | + | chr4.2:67521176-67521195 | None:intergenic | 30.0% | |
| TACTTCTGTGATAGATGTTA+TGG | - | chr4.2:67520226-67520245 | MS.gene85056:intron | 30.0% | |
| TATCTATATATTGCAGGAGA+GGG | - | chr4.2:67519629-67519648 | MS.gene85056:intron | 30.0% | |
| TTATCTATATATTGCAGGAG+AGG | - | chr4.2:67519628-67519647 | MS.gene85056:intron | 30.0% | |
| TTGCATGAAATTCATCCAAT+AGG | + | chr4.2:67520532-67520551 | None:intergenic | 30.0% | |
| TTTCTCATCAGCAGAAAATT+TGG | + | chr4.2:67520162-67520181 | None:intergenic | 30.0% | |
| ! | AGAAAAACTACAGTGTTGTT+GGG | - | chr4.2:67521414-67521433 | MS.gene85056:intron | 30.0% |
| ! | ATCTTGATCCAGTATAGTTT+TGG | + | chr4.2:67521372-67521391 | None:intergenic | 30.0% |
| ! | GGGAAGGAAAGATAATATTT+TGG | - | chr4.2:67519797-67519816 | MS.gene85056:intron | 30.0% |
| ! | TGAACCTTTGATTTAACTAC+AGG | - | chr4.2:67520352-67520371 | MS.gene85056:intron | 30.0% |
| ! | TTTTCTGCTGATGAGAAATA+TGG | - | chr4.2:67520164-67520183 | MS.gene85056:intron | 30.0% |
| !! | AAATAGTTTGTTACCTTTCG+TGG | + | chr4.2:67518183-67518202 | None:intergenic | 30.0% |
| !! | TCATTTTTGGATTTGTGAAC+AGG | - | chr4.2:67518916-67518935 | MS.gene85056:intron | 30.0% |
| !!! | AAAAGAAAAGCACTTTTCTG+AGG | + | chr4.2:67518226-67518245 | None:intergenic | 30.0% |
| !!! | AACATGATAGGTTTTGAAAG+AGG | - | chr4.2:67519091-67519110 | MS.gene85056:intron | 30.0% |
| !!! | CATTTTGGTTGTTTGAGATT+TGG | + | chr4.2:67518308-67518327 | None:intergenic | 30.0% |
| AAAATGCAGGTCTATAAGAG+TGG | - | chr4.2:67521106-67521125 | MS.gene85056:intron | 35.0% | |
| AACACATTCTTCAACTGCTA+TGG | - | chr4.2:67520190-67520209 | MS.gene85056:intron | 35.0% | |
| AATCAACGCATAACTGTTAG+TGG | + | chr4.2:67520722-67520741 | None:intergenic | 35.0% | |
| ACAGCTCAAGTTTATTCCAA+AGG | - | chr4.2:67518276-67518295 | MS.gene85056:CDS | 35.0% | |
| ACCATCATATTTCACATCAG+TGG | + | chr4.2:67520791-67520810 | None:intergenic | 35.0% | |
| AGATCAATGGCATCAATATC+AGG | + | chr4.2:67521473-67521492 | None:intergenic | 35.0% | |
| AGTAAAGGGAAGGAGAAAAT+TGG | - | chr4.2:67521013-67521032 | MS.gene85056:intron | 35.0% | |
| ATCTCACTACTAACTTTCTC+AGG | - | chr4.2:67519168-67519187 | MS.gene85056:intron | 35.0% | |
| CAAAGGTTCAGATGCTTATA+TGG | + | chr4.2:67520342-67520361 | None:intergenic | 35.0% | |
| CACATAGAATCAAGTAGTCA+TGG | + | chr4.2:67519971-67519990 | None:intergenic | 35.0% | |
| CAGCTCAAGTTTATTCCAAA+GGG | - | chr4.2:67518277-67518296 | MS.gene85056:CDS | 35.0% | |
| CATGACTACTTGATTCTATG+TGG | - | chr4.2:67519969-67519988 | MS.gene85056:intron | 35.0% | |
| CCGACATTCTCTATTCTATT+TGG | + | chr4.2:67520612-67520631 | None:intergenic | 35.0% | |
| GCGATTTCGATTTCACTTAA+TGG | - | chr4.2:67519301-67519320 | MS.gene85056:intron | 35.0% | |
| GGATCCTGTAGTTAAATCAA+AGG | + | chr4.2:67520359-67520378 | None:intergenic | 35.0% | |
| GGTAAAAATTGGATGTGTGT+TGG | - | chr4.2:67518844-67518863 | MS.gene85056:CDS | 35.0% | |
| TCCAATAGGTGATAGTTTGA+CGG | + | chr4.2:67520518-67520537 | None:intergenic | 35.0% | |
| TGATAAGAATTTCTCACCCA+TGG | + | chr4.2:67520284-67520303 | None:intergenic | 35.0% | |
| TGATAAGATAGAATTTGGGG+AGG | - | chr4.2:67520762-67520781 | MS.gene85056:intron | 35.0% | |
| TTCAGCTGCATAATGATAGT+AGG | + | chr4.2:67520884-67520903 | None:intergenic | 35.0% | |
| TTTATCATTGTGACCAGAAC+AGG | + | chr4.2:67519995-67520014 | None:intergenic | 35.0% | |
| ! | AAAAAAGGCGAGTAACTTGT+TGG | - | chr4.2:67521060-67521079 | MS.gene85056:intron | 35.0% |
| ! | AATTGGTACCTCGAAAGTAT+CGG | - | chr4.2:67521030-67521049 | MS.gene85056:intron | 35.0% |
| ! | AGCCGGTTCCATATAATATT+TGG | - | chr4.2:67520691-67520710 | MS.gene85056:intron | 35.0% |
| ! | ATTTTGCCCATATATCCACT+CGG | + | chr4.2:67521091-67521110 | None:intergenic | 35.0% |
| ! | TCCAATGGATTCAAGATCAA+TGG | + | chr4.2:67521486-67521505 | None:intergenic | 35.0% |
| !! | ATTGTTTTGCAACTTTAGGC+TGG | + | chr4.2:67519665-67519684 | None:intergenic | 35.0% |
| AAACCTGGATCTCCAGAATT+GGG | + | chr4.2:67520425-67520444 | None:intergenic | 40.0% | |
| AGTTCGTGTACGTAGCTTAT+TGG | - | chr4.2:67518454-67518473 | MS.gene85056:intron | 40.0% | |
| ATCCTACTACTCTTCCTCTA+AGG | - | chr4.2:67520396-67520415 | MS.gene85056:intron | 40.0% | |
| ATGATAGCATTTGGTAGGAC+AGG | + | chr4.2:67519497-67519516 | None:intergenic | 40.0% | |
| GCCACTGATGTGAAATATGA+TGG | - | chr4.2:67520787-67520806 | MS.gene85056:intron | 40.0% | |
| GCCATTGATCTTGAATCCAT+TGG | - | chr4.2:67521482-67521501 | MS.gene85056:CDS | 40.0% | |
| GGTGGAACTTACATCATACA+GGG | + | chr4.2:67521158-67521177 | None:intergenic | 40.0% | |
| TATATATTGCAGGAGAGGGT+TGG | - | chr4.2:67519633-67519652 | MS.gene85056:intron | 40.0% | |
| TCAAGCCAGTGAACAGTAAA+GGG | - | chr4.2:67520999-67521018 | MS.gene85056:intron | 40.0% | |
| TCACTTTCGCTGAGATCATT+TGG | - | chr4.2:67520098-67520117 | MS.gene85056:intron | 40.0% | |
| TCATAGTTGTGATGTTGGGA+AGG | - | chr4.2:67519781-67519800 | MS.gene85056:intron | 40.0% | |
| TCCAGGTACCAAAACTATAC+TGG | - | chr4.2:67521361-67521380 | MS.gene85056:CDS | 40.0% | |
| TCCGTCAAACTATCACCTAT+TGG | - | chr4.2:67520514-67520533 | MS.gene85056:intron | 40.0% | |
| TGGATATATGGGCAAAATGC+AGG | - | chr4.2:67521093-67521112 | MS.gene85056:intron | 40.0% | |
| TGGATGAGAAAGATGCAGAT+AGG | + | chr4.2:67520322-67520341 | None:intergenic | 40.0% | |
| TGGTGTGTTTGGTTGAATAG+TGG | - | chr4.2:67519321-67519340 | MS.gene85056:intron | 40.0% | |
| TTAATTCCGCAGCAGAACTT+GGG | - | chr4.2:67520818-67520837 | MS.gene85056:intron | 40.0% | |
| TTCCTTAGAGGAAGAGTAGT+AGG | + | chr4.2:67520401-67520420 | None:intergenic | 40.0% | |
| ! | AAACTACAGTGTTGTTGGGA+AGG | - | chr4.2:67521418-67521437 | MS.gene85056:intron | 40.0% |
| ! | CACTGATGATGAAGACTACA+CGG | - | chr4.2:67520256-67520275 | MS.gene85056:intron | 40.0% |
| ! | GGATAGTTTGAGTTTGTGTC+AGG | + | chr4.2:67520380-67520399 | None:intergenic | 40.0% |
| !! | AGTATCGGCAAAGGCAAAAA+AGG | - | chr4.2:67521045-67521064 | MS.gene85056:intron | 40.0% |
| !! | TGAGATTTGGGTTTTCCCTT+TGG | + | chr4.2:67518295-67518314 | None:intergenic | 40.0% |
| !!! | TCCAGTATAGTTTTGGTACC+TGG | + | chr4.2:67521365-67521384 | None:intergenic | 40.0% |
| ACCTTTCGTGGAGTTCTGTT+TGG | + | chr4.2:67518171-67518190 | None:intergenic | 45.0% | |
| AGCGAAAGTGACGAATCTCT+AGG | + | chr4.2:67520089-67520108 | None:intergenic | 45.0% | |
| ATGAAGACTACACGGAACCA+TGG | - | chr4.2:67520264-67520283 | MS.gene85056:intron | 45.0% | |
| ATGGGTCCAACATAAAGTGG+CGG | + | chr4.2:67520558-67520577 | None:intergenic | 45.0% | |
| CAAACCTGGATCTCCAGAAT+TGG | + | chr4.2:67520426-67520445 | None:intergenic | 45.0% | |
| CGTGTAGTCTTCATCATCAG+TGG | + | chr4.2:67520258-67520277 | None:intergenic | 45.0% | |
| CTGAGGAACACGATGAAGAA+GGG | + | chr4.2:67518209-67518228 | None:intergenic | 45.0% | |
| CTTAATTCCGCAGCAGAACT+TGG | - | chr4.2:67520817-67520836 | MS.gene85056:intron | 45.0% | |
| GAAGGTTACAGTTGACGCAA+AGG | - | chr4.2:67521436-67521455 | MS.gene85056:intron | 45.0% | |
| GAGCTTCCGAGTGGATATAT+GGG | - | chr4.2:67521082-67521101 | MS.gene85056:intron | 45.0% | |
| GGAATGGGTCCAACATAAAG+TGG | + | chr4.2:67520561-67520580 | None:intergenic | 45.0% | |
| GGGTGGAACTTACATCATAC+AGG | + | chr4.2:67521159-67521178 | None:intergenic | 45.0% | |
| GTCAAGCCAGTGAACAGTAA+AGG | - | chr4.2:67520998-67521017 | MS.gene85056:intron | 45.0% | |
| TACGAGCTTCGAACTCATTG+TGG | + | chr4.2:67519354-67519373 | None:intergenic | 45.0% | |
| TCCAAACAGAACTCCACGAA+AGG | - | chr4.2:67518167-67518186 | MS.gene85056:CDS | 45.0% | |
| TCCTTCCCTTTACTGTTCAC+TGG | + | chr4.2:67521007-67521026 | None:intergenic | 45.0% | |
| TCTGAGGAACACGATGAAGA+AGG | + | chr4.2:67518210-67518229 | None:intergenic | 45.0% | |
| TGAAGACTACACGGAACCAT+GGG | - | chr4.2:67520265-67520284 | MS.gene85056:intron | 45.0% | |
| TGATTCTATGTGGCCTGTTC+TGG | - | chr4.2:67519979-67519998 | MS.gene85056:intron | 45.0% | |
| TGTTGGACCCATTCCCAAAA+CGG | - | chr4.2:67520566-67520585 | MS.gene85056:intron | 45.0% | |
| TTGACACAAGGCAGAACAGT+AGG | + | chr4.2:67520983-67521002 | None:intergenic | 45.0% | |
| TTTCTCATACAGGTGTCTCC+AGG | - | chr4.2:67521344-67521363 | MS.gene85056:CDS | 45.0% | |
| ! | ACAGGTAATGGTGAAAGCAG+TGG | - | chr4.2:67520128-67520147 | MS.gene85056:intron | 45.0% |
| !! | TACCTCGAAAGTATCGGCAA+AGG | - | chr4.2:67521036-67521055 | MS.gene85056:intron | 45.0% |
| CCAGAATTGGGCTTCCTTAG+AGG | + | chr4.2:67520413-67520432 | None:intergenic | 50.0% | |
| GCCAGTGAACAGTAAAGGGA+AGG | - | chr4.2:67521003-67521022 | MS.gene85056:intron | 50.0% | |
| GGAGCTTCCGAGTGGATATA+TGG | - | chr4.2:67521081-67521100 | MS.gene85056:intron | 50.0% | |
| TCGCTGAGATCATTTGGCAG+CGG | - | chr4.2:67520104-67520123 | MS.gene85056:intron | 50.0% | |
| TGCCTTTGCCGATACTTTCG+AGG | + | chr4.2:67521041-67521060 | None:intergenic | 50.0% | |
| TGGGTCCAACATAAAGTGGC+GGG | + | chr4.2:67520557-67520576 | None:intergenic | 50.0% | |
| ! | AAGCCCAATTCTGGAGATCC+AGG | - | chr4.2:67520419-67520438 | MS.gene85056:intron | 50.0% |
| ! | CAAGTCCCGCCACTTTATGT+TGG | - | chr4.2:67520549-67520568 | MS.gene85056:intron | 50.0% |
| ! | CCTCTAAGGAAGCCCAATTC+TGG | - | chr4.2:67520410-67520429 | MS.gene85056:intron | 50.0% |
| ! | TCGAGTATGTTCCGCCGTTT+TGG | + | chr4.2:67520583-67520602 | None:intergenic | 50.0% |
| !! | AACTTGTTGGAGCTTCCGAG+TGG | - | chr4.2:67521073-67521092 | MS.gene85056:intron | 50.0% |
| !! | CGAGTATGTTCCGCCGTTTT+GGG | + | chr4.2:67520582-67520601 | None:intergenic | 50.0% |
| !! | CTGTTCACTGGCTTGACACA+AGG | + | chr4.2:67520995-67521014 | None:intergenic | 50.0% |
| !!! | ATGTTCCGCCGTTTTGGGAA+TGG | + | chr4.2:67520577-67520596 | None:intergenic | 50.0% |
| !!! | TGTTCCGCCGTTTTGGGAAT+GGG | + | chr4.2:67520576-67520595 | None:intergenic | 50.0% |
| AGATCATTTGGCAGCGGCAC+AGG | - | chr4.2:67520110-67520129 | MS.gene85056:intron | 55.0% | |
| AGGAAATGCATCTCGCGCAC+TGG | + | chr4.2:67520069-67520088 | None:intergenic | 55.0% | |
| CAAGAGCCCAAGTTCTGCTG+CGG | + | chr4.2:67520827-67520846 | None:intergenic | 55.0% | |
| TGGACCCATTCCCAAAACGG+CGG | - | chr4.2:67520569-67520588 | MS.gene85056:intron | 55.0% | |
| TTTGGCAGCGGCACAGGTAA+TGG | - | chr4.2:67520116-67520135 | MS.gene85056:intron | 55.0% | |
| CGCAGCAGAACTTGGGCTCT+TGG | - | chr4.2:67520825-67520844 | MS.gene85056:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 67518153 | 67521511 | 67518153 | ID=MS.gene85056 |
| chr4.2 | mRNA | 67518153 | 67521511 | 67518153 | ID=MS.gene85056.t1;Parent=MS.gene85056 |
| chr4.2 | exon | 67521476 | 67521511 | 67521476 | ID=MS.gene85056.t1.exon1;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67521476 | 67521511 | 67521476 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67521338 | 67521384 | 67521338 | ID=MS.gene85056.t1.exon2;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67521338 | 67521384 | 67521338 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67521189 | 67521246 | 67521189 | ID=MS.gene85056.t1.exon3;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67521189 | 67521246 | 67521189 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67519980 | 67520019 | 67519980 | ID=MS.gene85056.t1.exon4;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67519980 | 67520019 | 67519980 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67519378 | 67519598 | 67519378 | ID=MS.gene85056.t1.exon5;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67519378 | 67519598 | 67519378 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67519224 | 67519290 | 67519224 | ID=MS.gene85056.t1.exon6;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67519224 | 67519290 | 67519224 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67518818 | 67518909 | 67518818 | ID=MS.gene85056.t1.exon7;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67518818 | 67518909 | 67518818 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67518499 | 67518723 | 67518499 | ID=MS.gene85056.t1.exon8;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67518499 | 67518723 | 67518499 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| chr4.2 | exon | 67518153 | 67518308 | 67518153 | ID=MS.gene85056.t1.exon9;Parent=MS.gene85056.t1 |
| chr4.2 | CDS | 67518153 | 67518308 | 67518153 | ID=cds.MS.gene85056.t1;Parent=MS.gene85056.t1 |
| Gene Sequence |
| Protein sequence |
