Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85225.t1 | XP_003597581.1 | 92.6 | 229 | 17 | 0 | 1 | 229 | 1 | 229 | 5.90E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85225.t1 | G7IS52 | 92.6 | 229 | 17 | 0 | 1 | 229 | 1 | 229 | 4.3e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene85225 | 0.816143 | 6.44E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene85225 | 0.812475 | 4.16E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene85225 | 0.805671 | 1.19E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene85225 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene85225 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene85225 | 0.822378 | 2.45E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene85225 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene85225 | 0.816324 | 5.86E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene85225 | 0.805013 | 1.64E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene85225 | 0.811427 | 7.04E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene85225 | 0.806208 | 9.20E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene85225 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene85225 | 0.810127 | 1.34E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene85225 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene053597 | MS.gene85225 | 0.800925 | 1.15E-48 | -1.69E-46 |
| MS.gene053599 | MS.gene85225 | 0.815296 | 9.94E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene85225 | 0.841438 | 4.75E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene85225 | 0.834066 | 3.72E-56 | -1.69E-46 |
| MS.gene057008 | MS.gene85225 | 0.843471 | 1.37E-58 | -1.69E-46 |
| MS.gene057057 | MS.gene85225 | 0.808216 | 3.45E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene85225 | 0.827415 | 1.58E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene85225 | 0.813365 | 2.66E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene85225 | 0.816711 | 4.80E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene85225 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene85225 | 0.828171 | 1.04E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene85225 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene85225 | 0.82728 | 1.71E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85225.t1 | MTR_2g099820 | 85.283 | 265 | 27 | 1 | 1 | 253 | 1 | 265 | 1.18e-151 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85225.t1 | AT3G13780 | 40.602 | 266 | 145 | 5 | 1 | 253 | 14 | 279 | 7.20e-54 | 177 |
Find 63 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAATTGATCCTGTTAA+AGG | 0.155025 | 2.4:+4500764 | MS.gene85225:CDS |
| TCAAAGTTATTACCTTTAAC+AGG | 0.314979 | 2.4:-4500776 | None:intergenic |
| AAGGTTTCATTTCAAGTCAT+TGG | 0.319227 | 2.4:+4500560 | MS.gene85225:CDS |
| TCATTGGAAGAAACCCTATC+TGG | 0.338307 | 2.4:+4500576 | MS.gene85225:CDS |
| TGATCCGGAATGTGGAGAAT+TGG | 0.345241 | 2.4:+4502217 | MS.gene85225:CDS |
| TCATCCTCACTTTCTTTGCT+AGG | 0.386031 | 2.4:-4502258 | None:intergenic |
| TTGTTCTTCAAAACCCAGAT+AGG | 0.388052 | 2.4:-4500590 | None:intergenic |
| GGATCATGCCCTTTGGATAC+TGG | 0.392754 | 2.4:-4502200 | None:intergenic |
| GTATCTTTGATATCTCTCTT+AGG | 0.392852 | 2.4:-4502447 | None:intergenic |
| TGTCTGCGAAAACACCCTTT+TGG | 0.394919 | 2.4:+4500681 | MS.gene85225:CDS |
| AAGGAACTTGTTGCTAAGGT+TGG | 0.407977 | 2.4:+4502375 | MS.gene85225:CDS |
| CTTCTTCAAATTGAACCAAA+AGG | 0.419549 | 2.4:-4500696 | None:intergenic |
| GATCCGGAATGTGGAGAATT+GGG | 0.436535 | 2.4:+4502218 | MS.gene85225:CDS |
| TGAGGATGAGGAAGAGGAGG+AGG | 0.440983 | 2.4:+4502581 | MS.gene85225:CDS |
| AGGAACTTGTTGCTAAGGTT+GGG | 0.441377 | 2.4:+4502376 | MS.gene85225:CDS |
| ACATTCCGGATCATGCCCTT+TGG | 0.441791 | 2.4:-4502207 | None:intergenic |
| GAAATGGGTCATTTGAAACT+TGG | 0.450375 | 2.4:+4500644 | MS.gene85225:CDS |
| TGAGGATAAAAGGAAAATGA+AGG | 0.453909 | 2.4:+4502290 | MS.gene85225:CDS |
| ATGACTTGAAATGAAACCTT+AGG | 0.465906 | 2.4:-4500557 | None:intergenic |
| TTCTTCAAATTGAACCAAAA+GGG | 0.471521 | 2.4:-4500695 | None:intergenic |
| TGGTGATAGTGAAGATGATA+AGG | 0.481772 | 2.4:+4502356 | MS.gene85225:CDS |
| AATCAGACTCGTTGTTGAGT+TGG | 0.499196 | 2.4:-4500526 | None:intergenic |
| TGATAAGGAACTTGTTGCTA+AGG | 0.499728 | 2.4:+4502371 | MS.gene85225:CDS |
| TAGCAAAGAAAGTGAGGATG+AGG | 0.513147 | 2.4:+4502260 | MS.gene85225:CDS |
| AACAGCGACAAAACACTGTT+CGG | 0.516498 | 2.4:+4500446 | MS.gene85225:CDS |
| TGACAATGAGGATGAGGAAG+AGG | 0.516829 | 2.4:+4502575 | MS.gene85225:CDS |
| TGTTCTTCAAAACCCAGATA+GGG | 0.524313 | 2.4:-4500589 | None:intergenic |
| ACTCCCAATTCTCCACATTC+CGG | 0.528495 | 2.4:-4502221 | None:intergenic |
| CAATGAGGATGAGGAAGAGG+AGG | 0.529872 | 2.4:+4502578 | MS.gene85225:CDS |
| GCAAGGTCTAAAGACAATAG+AGG | 0.531239 | 2.4:+4502423 | MS.gene85225:CDS |
| AGTATCCAAAGGGCATGATC+CGG | 0.532093 | 2.4:+4502202 | MS.gene85225:CDS |
| ATGGAGTTCGAAGGCGAAGA+TGG | 0.533843 | 2.4:+4500404 | MS.gene85225:CDS |
| GTCTGATTCAGAGCCTCCTA+AGG | 0.535965 | 2.4:+4500541 | MS.gene85225:CDS |
| TGATGAAGAAGATGAGGATG+AGG | 0.536649 | 2.4:+4502542 | MS.gene85225:CDS |
| TTAGACCTTGCGGAGTACCT+AGG | 0.545892 | 2.4:-4502411 | None:intergenic |
| CATTGGAAGAAACCCTATCT+GGG | 0.552765 | 2.4:+4500577 | MS.gene85225:CDS |
| ACACTGTTCGGACGAGATTG+CGG | 0.559337 | 2.4:+4500458 | MS.gene85225:CDS |
| AAACAATGACAATGAGGATG+AGG | 0.562409 | 2.4:+4502569 | MS.gene85225:CDS |
| GAGGATAAAAGGAAAATGAA+GGG | 0.567105 | 2.4:+4502291 | MS.gene85225:CDS |
| GATGTCGATGATGCTGTGGC+GGG | 0.568109 | 2.4:+4502618 | MS.gene85225:CDS |
| TCTATTGTCTTTAGACCTTG+CGG | 0.572441 | 2.4:-4502421 | None:intergenic |
| TTGGGAAAGGTAAGAAACCT+AGG | 0.574841 | 2.4:+4502394 | MS.gene85225:CDS |
| AACAAAGATGACGAGTGGAC+TGG | 0.577011 | 2.4:+4502336 | MS.gene85225:CDS |
| CTTGTTGCTAAGGTTGGGAA+AGG | 0.577595 | 2.4:+4502381 | MS.gene85225:CDS |
| GAGTTTGACCAGTATCCAAA+GGG | 0.590357 | 2.4:+4502192 | MS.gene85225:CDS |
| ACTTGAAATGAAACCTTAGG+AGG | 0.593531 | 2.4:-4500554 | None:intergenic |
| AAAGGGCATGATCCGGAATG+TGG | 0.603271 | 2.4:+4502209 | MS.gene85225:CDS |
| GACGATGATGAGACGCTAGG+AGG | 0.603685 | 2.4:+4502507 | MS.gene85225:CDS |
| TGAGTTTGACCAGTATCCAA+AGG | 0.622122 | 2.4:+4502191 | MS.gene85225:CDS |
| GGAGCCTAGCAAAGAAAGTG+AGG | 0.635527 | 2.4:+4502254 | MS.gene85225:CDS |
| AGATGTCGATGATGCTGTGG+CGG | 0.638524 | 2.4:+4502617 | MS.gene85225:CDS |
| GAGACAACAAAGATGACGAG+TGG | 0.639451 | 2.4:+4502331 | MS.gene85225:CDS |
| GAATTGGGAGTGGTTTCTCG+AGG | 0.640949 | 2.4:+4502233 | MS.gene85225:CDS |
| TAATTCTGAATGGAGTTCGA+AGG | 0.641013 | 2.4:+4500395 | None:intergenic |
| GGAATGTGGAGAATTGGGAG+TGG | 0.641413 | 2.4:+4502223 | MS.gene85225:CDS |
| GGAACAAAACAATGACAATG+AGG | 0.654439 | 2.4:+4502563 | MS.gene85225:CDS |
| TGTTACTGATGAAGAAGATG+AGG | 0.658205 | 2.4:+4502536 | MS.gene85225:CDS |
| GATGACGATGATGAGACGCT+AGG | 0.662670 | 2.4:+4502504 | MS.gene85225:CDS |
| AGATATCAAAGATACTAGTG+TGG | 0.683203 | 2.4:+4502455 | MS.gene85225:CDS |
| AGAAACCTAGGTACTCCGCA+AGG | 0.683889 | 2.4:+4502406 | MS.gene85225:CDS |
| AGAAGATGTCGATGATGCTG+TGG | 0.693338 | 2.4:+4502614 | MS.gene85225:CDS |
| ATGTCGATGATGCTGTGGCG+GGG | 0.727263 | 2.4:+4502619 | MS.gene85225:CDS |
| CGTGATGACGAGAAACAGTG+TGG | 0.730657 | 2.4:-4500496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTCATTTTCAATATA+AGG | + | chr2.4:4501507-4501526 | MS.gene85225:intron | 10.0% |
| !! | TAATTTATTTAAGTATATCC+AGG | + | chr2.4:4501118-4501137 | MS.gene85225:intron | 15.0% |
| !! | TACAAATTCCAATATTATTT+AGG | + | chr2.4:4501584-4501603 | MS.gene85225:intron | 15.0% |
| !!! | AGTTTATTTTTGTGTTAATT+TGG | + | chr2.4:4501446-4501465 | MS.gene85225:intron | 15.0% |
| !!! | TTTTAACAAAATCGATAATT+TGG | + | chr2.4:4500875-4500894 | MS.gene85225:intron | 15.0% |
| !! | AAAAATAGTTTCCATCAAAA+GGG | - | chr2.4:4500803-4500822 | None:intergenic | 20.0% |
| !! | AACTTGATCCTAAATAATAT+TGG | - | chr2.4:4501595-4501614 | None:intergenic | 20.0% |
| !! | AATAAGTTAAAAACAACTCA+TGG | - | chr2.4:4501220-4501239 | None:intergenic | 20.0% |
| !! | CTTATATATAAGCACTTATA+TGG | + | chr2.4:4501331-4501350 | MS.gene85225:intron | 20.0% |
| !! | TAGAATTATACTATCCTTAA+AGG | - | chr2.4:4501082-4501101 | None:intergenic | 20.0% |
| !! | TTAAGGATAGTATAATTCTA+AGG | + | chr2.4:4501082-4501101 | MS.gene85225:intron | 20.0% |
| !!! | ATTTTCAAGAAATTCGAAAT+GGG | + | chr2.4:4500629-4500648 | MS.gene85225:CDS | 20.0% |
| !!! | TCATTTTCAATATAAGGTAT+GGG | + | chr2.4:4501513-4501532 | MS.gene85225:intron | 20.0% |
| !!! | TTCATTTTCAATATAAGGTA+TGG | + | chr2.4:4501512-4501531 | MS.gene85225:intron | 20.0% |
| ! | AAAACAAATTCATGCGTAAA+TGG | - | chr2.4:4502085-4502104 | None:intergenic | 25.0% |
| ! | AAAATAGTTTCCATCAAAAG+GGG | - | chr2.4:4500802-4500821 | None:intergenic | 25.0% |
| ! | AAAGTATACATGTCCTTAAA+AGG | - | chr2.4:4501489-4501508 | None:intergenic | 25.0% |
| ! | ATCATAAACTATAGTACTCA+TGG | - | chr2.4:4501422-4501441 | None:intergenic | 25.0% |
| ! | CAAAAATAGTTTCCATCAAA+AGG | - | chr2.4:4500804-4500823 | None:intergenic | 25.0% |
| ! | CAGAATAATCCCATATTTAT+AGG | - | chr2.4:4501715-4501734 | None:intergenic | 25.0% |
| ! | CGAATACTACCTATAAATAT+GGG | + | chr2.4:4501703-4501722 | MS.gene85225:intron | 25.0% |
| ! | GATGCTAATATTATAGAAGA+AGG | - | chr2.4:4501543-4501562 | None:intergenic | 25.0% |
| ! | TCAAAGTTATTACCTTTAAC+AGG | - | chr2.4:4500779-4500798 | None:intergenic | 25.0% |
| ! | TCGAATACTACCTATAAATA+TGG | + | chr2.4:4501702-4501721 | MS.gene85225:intron | 25.0% |
| ! | TTCTTCAAATTGAACCAAAA+GGG | - | chr2.4:4500698-4500717 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCTAAC+AGG | + | chr2.4:4501379-4501398 | MS.gene85225:intron | 25.0% |
| !! | CATTTTCAATATAAGGTATG+GGG | + | chr2.4:4501514-4501533 | MS.gene85225:intron | 25.0% |
| !! | CTTCATTCCTTTTGTAAATT+TGG | + | chr2.4:4501648-4501667 | MS.gene85225:intron | 25.0% |
| !! | TTAAGTTGTTTATCCTAACA+GGG | + | chr2.4:4501380-4501399 | MS.gene85225:intron | 25.0% |
| !! | TTTGAGAGTTTCTTTTGTAT+TGG | + | chr2.4:4501022-4501041 | MS.gene85225:intron | 25.0% |
| !!! | AAAAAGTGTTGAACTTTTCT+GGG | + | chr2.4:4501774-4501793 | MS.gene85225:intron | 25.0% |
| !!! | AATTTTGAAAATGCAGAGTT+TGG | + | chr2.4:4502150-4502169 | MS.gene85225:intron | 25.0% |
| !!! | CTTTCATTTTTGTTGTTTCT+CGG | + | chr2.4:4501623-4501642 | MS.gene85225:intron | 25.0% |
| !!! | GAAAAGTAAGTTTTTTTAGC+TGG | + | chr2.4:4500897-4500916 | MS.gene85225:intron | 25.0% |
| !!! | GATTTTCAAGAAATTCGAAA+TGG | + | chr2.4:4500628-4500647 | MS.gene85225:CDS | 25.0% |
| !!! | TAAAAAGTGTTGAACTTTTC+TGG | + | chr2.4:4501773-4501792 | MS.gene85225:intron | 25.0% |
| !!! | TTTTAGTTTGACTGATTCTT+AGG | + | chr2.4:4501159-4501178 | MS.gene85225:intron | 25.0% |
| AATGGAAATGAAATGGTTAC+TGG | + | chr2.4:4501803-4501822 | MS.gene85225:intron | 30.0% | |
| ACTTGAAAATCTCTTTCTCA+AGG | - | chr2.4:4501841-4501860 | None:intergenic | 30.0% | |
| AGATATCAAAGATACTAGTG+TGG | + | chr2.4:4502455-4502474 | MS.gene85225:CDS | 30.0% | |
| ATGACTTGAAATGAAACCTT+AGG | - | chr2.4:4500560-4500579 | None:intergenic | 30.0% | |
| CAAGCAACCAAATTTACAAA+AGG | - | chr2.4:4501658-4501677 | None:intergenic | 30.0% | |
| CTTCTTCAAATTGAACCAAA+AGG | - | chr2.4:4500699-4500718 | None:intergenic | 30.0% | |
| GAATTTGTAACCAACTAAAG+AGG | - | chr2.4:4501573-4501592 | None:intergenic | 30.0% | |
| GAGGATAAAAGGAAAATGAA+GGG | + | chr2.4:4502291-4502310 | MS.gene85225:CDS | 30.0% | |
| GGTTAGAAATGGAAATGAAA+TGG | + | chr2.4:4501796-4501815 | MS.gene85225:intron | 30.0% | |
| GTATATTTGTGTAGCCTTTA+AGG | + | chr2.4:4501065-4501084 | MS.gene85225:intron | 30.0% | |
| GTATCTTTGATATCTCTCTT+AGG | - | chr2.4:4502450-4502469 | None:intergenic | 30.0% | |
| TCACAAATTGATCCTGTTAA+AGG | + | chr2.4:4500764-4500783 | MS.gene85225:CDS | 30.0% | |
| TGAATTATACTACCCTTAGA+AGG | - | chr2.4:4502012-4502031 | None:intergenic | 30.0% | |
| TGAGGATAAAAGGAAAATGA+AGG | + | chr2.4:4502290-4502309 | MS.gene85225:CDS | 30.0% | |
| ! | AAGGTTTCATTTCAAGTCAT+TGG | + | chr2.4:4500560-4500579 | MS.gene85225:CDS | 30.0% |
| ! | AATTCACAGTGATAGCTTTT+AGG | + | chr2.4:4502108-4502127 | MS.gene85225:intron | 30.0% |
| ! | CTTTTGTAAATTTGGTTGCT+TGG | + | chr2.4:4501656-4501675 | MS.gene85225:intron | 30.0% |
| !! | AGGATGATTTTGAGGATAAA+AGG | + | chr2.4:4502280-4502299 | MS.gene85225:CDS | 30.0% |
| !! | ATAATTCTAAGGCTCTTGTT+TGG | + | chr2.4:4501093-4501112 | MS.gene85225:intron | 30.0% |
| !! | GCTGTTTTGTAAAGAGAATT+TGG | - | chr2.4:4500432-4500451 | None:intergenic | 30.0% |
| !! | GTTAGCTTAATAGCCTTTTA+AGG | + | chr2.4:4501473-4501492 | MS.gene85225:intron | 30.0% |
| !!! | AAAAGTGTTGAACTTTTCTG+GGG | + | chr2.4:4501775-4501794 | MS.gene85225:intron | 30.0% |
| !!! | AGTTTGGTTTTCTTGTTATG+AGG | + | chr2.4:4502166-4502185 | MS.gene85225:CDS | 30.0% |
| !!! | TGTCTTTTGAAATTGAGTGT+GGG | + | chr2.4:4501750-4501769 | MS.gene85225:intron | 30.0% |
| !!! | TTGTCTTTTGAAATTGAGTG+TGG | + | chr2.4:4501749-4501768 | MS.gene85225:intron | 30.0% |
| AAACAATGACAATGAGGATG+AGG | + | chr2.4:4502569-4502588 | MS.gene85225:CDS | 35.0% | |
| AACCAACTAAAGAGGAAAGT+AGG | - | chr2.4:4501565-4501584 | None:intergenic | 35.0% | |
| AATCTCTTTCTCAAGGAATG+TGG | - | chr2.4:4501834-4501853 | None:intergenic | 35.0% | |
| ACTTGAAATGAAACCTTAGG+AGG | - | chr2.4:4500557-4500576 | None:intergenic | 35.0% | |
| ATCCTACTTTCCTCTTTAGT+TGG | + | chr2.4:4501560-4501579 | MS.gene85225:intron | 35.0% | |
| GGAACAAAACAATGACAATG+AGG | + | chr2.4:4502563-4502582 | MS.gene85225:CDS | 35.0% | |
| GTTTAGCATTGTTCACTTGA+TGG | + | chr2.4:4502037-4502056 | MS.gene85225:intron | 35.0% | |
| TCCTGCTAAGAAAATGTCAT+TGG | - | chr2.4:4500963-4500982 | None:intergenic | 35.0% | |
| TCTATTGTCTTTAGACCTTG+CGG | - | chr2.4:4502424-4502443 | None:intergenic | 35.0% | |
| TGCTGAATTCATGTCAACAA+TGG | + | chr2.4:4501878-4501897 | MS.gene85225:intron | 35.0% | |
| TGTTACTGATGAAGAAGATG+AGG | + | chr2.4:4502536-4502555 | MS.gene85225:CDS | 35.0% | |
| TGTTCTTCAAAACCCAGATA+GGG | - | chr2.4:4500592-4500611 | None:intergenic | 35.0% | |
| TTATATCTTGCAAGTGTCTG+TGG | + | chr2.4:4501978-4501997 | MS.gene85225:intron | 35.0% | |
| TTGTTCTTCAAAACCCAGAT+AGG | - | chr2.4:4500593-4500612 | None:intergenic | 35.0% | |
| ! | ATAACTTTGACCCCTTTTGA+TGG | + | chr2.4:4500789-4500808 | MS.gene85225:intron | 35.0% |
| ! | CTCATGGTTGACTTAGATTT+AGG | - | chr2.4:4501406-4501425 | None:intergenic | 35.0% |
| ! | GAAATGGGTCATTTGAAACT+TGG | + | chr2.4:4500644-4500663 | MS.gene85225:CDS | 35.0% |
| ! | GGATATGAGTTGCAAGTTTT+AGG | + | chr2.4:4501043-4501062 | MS.gene85225:intron | 35.0% |
| ! | TGGTGATAGTGAAGATGATA+AGG | + | chr2.4:4502356-4502375 | MS.gene85225:CDS | 35.0% |
| ! | TTTTCGCAGACAAGCAAAAT+CGG | - | chr2.4:4500673-4500692 | None:intergenic | 35.0% |
| !! | TGATAAGGAACTTGTTGCTA+AGG | + | chr2.4:4502371-4502390 | MS.gene85225:CDS | 35.0% |
| !!! | AACTTTTCTGGGGTTAGAAA+TGG | + | chr2.4:4501785-4501804 | MS.gene85225:intron | 35.0% |
| AACAGCGACAAAACACTGTT+CGG | + | chr2.4:4500446-4500465 | MS.gene85225:CDS | 40.0% | |
| AATCAGACTCGTTGTTGAGT+TGG | - | chr2.4:4500529-4500548 | None:intergenic | 40.0% | |
| ACTTAGATTTAGGCCCTGTT+AGG | - | chr2.4:4501396-4501415 | None:intergenic | 40.0% | |
| CATTGGAAGAAACCCTATCT+GGG | + | chr2.4:4500577-4500596 | MS.gene85225:CDS | 40.0% | |
| GAGTTTGACCAGTATCCAAA+GGG | + | chr2.4:4502192-4502211 | MS.gene85225:CDS | 40.0% | |
| GCAAGGTCTAAAGACAATAG+AGG | + | chr2.4:4502423-4502442 | MS.gene85225:CDS | 40.0% | |
| TAGCAAAGAAAGTGAGGATG+AGG | + | chr2.4:4502260-4502279 | MS.gene85225:CDS | 40.0% | |
| TCATCCTCACTTTCTTTGCT+AGG | - | chr2.4:4502261-4502280 | None:intergenic | 40.0% | |
| TCATTGGAAGAAACCCTATC+TGG | + | chr2.4:4500576-4500595 | MS.gene85225:CDS | 40.0% | |
| TGAGTTTGACCAGTATCCAA+AGG | + | chr2.4:4502191-4502210 | MS.gene85225:CDS | 40.0% | |
| TGATGAAGAAGATGAGGATG+AGG | + | chr2.4:4502542-4502561 | MS.gene85225:CDS | 40.0% | |
| TTGGGAAAGGTAAGAAACCT+AGG | + | chr2.4:4502394-4502413 | MS.gene85225:CDS | 40.0% | |
| ! | GCCAATGACATTTTCTTAGC+AGG | + | chr2.4:4500959-4500978 | MS.gene85225:intron | 40.0% |
| ! | TGAGGATGAGGATGATTTTG+AGG | + | chr2.4:4502272-4502291 | MS.gene85225:CDS | 40.0% |
| !! | AAGGAACTTGTTGCTAAGGT+TGG | + | chr2.4:4502375-4502394 | MS.gene85225:CDS | 40.0% |
| !! | AGGAACTTGTTGCTAAGGTT+GGG | + | chr2.4:4502376-4502395 | MS.gene85225:CDS | 40.0% |
| !! | GCTATTTTCACAAGCTAGCA+TGG | - | chr2.4:4501255-4501274 | None:intergenic | 40.0% |
| !! | GCTATTTTCACAAGCTATCC+TGG | - | chr2.4:4501139-4501158 | None:intergenic | 40.0% |
| AACAAAGATGACGAGTGGAC+TGG | + | chr2.4:4502336-4502355 | MS.gene85225:CDS | 45.0% | |
| ACTCCCAATTCTCCACATTC+CGG | - | chr2.4:4502224-4502243 | None:intergenic | 45.0% | |
| AGAAGATGTCGATGATGCTG+TGG | + | chr2.4:4502614-4502633 | MS.gene85225:CDS | 45.0% | |
| CTTGTTGCTAAGGTTGGGAA+AGG | + | chr2.4:4502381-4502400 | MS.gene85225:CDS | 45.0% | |
| GAGACAACAAAGATGACGAG+TGG | + | chr2.4:4502331-4502350 | MS.gene85225:CDS | 45.0% | |
| GATCCGGAATGTGGAGAATT+GGG | + | chr2.4:4502218-4502237 | MS.gene85225:CDS | 45.0% | |
| GTGGCTGTGTAACCTTCTAA+GGG | + | chr2.4:4501997-4502016 | MS.gene85225:intron | 45.0% | |
| TGACAATGAGGATGAGGAAG+AGG | + | chr2.4:4502575-4502594 | MS.gene85225:CDS | 45.0% | |
| TGATCCGGAATGTGGAGAAT+TGG | + | chr2.4:4502217-4502236 | MS.gene85225:CDS | 45.0% | |
| TGTGGCTGTGTAACCTTCTA+AGG | + | chr2.4:4501996-4502015 | MS.gene85225:intron | 45.0% | |
| ! | AGTATCCAAAGGGCATGATC+CGG | + | chr2.4:4502202-4502221 | MS.gene85225:CDS | 45.0% |
| ! | TGTCTGCGAAAACACCCTTT+TGG | + | chr2.4:4500681-4500700 | MS.gene85225:CDS | 45.0% |
| ACACTGTTCGGACGAGATTG+CGG | + | chr2.4:4500458-4500477 | MS.gene85225:CDS | 50.0% | |
| ACATTCCGGATCATGCCCTT+TGG | - | chr2.4:4502210-4502229 | None:intergenic | 50.0% | |
| AGAAACCTAGGTACTCCGCA+AGG | + | chr2.4:4502406-4502425 | MS.gene85225:CDS | 50.0% | |
| AGATGTCGATGATGCTGTGG+CGG | + | chr2.4:4502617-4502636 | MS.gene85225:CDS | 50.0% | |
| ATGGAGTTCGAAGGCGAAGA+TGG | + | chr2.4:4500404-4500423 | MS.gene85225:CDS | 50.0% | |
| CAATGAGGATGAGGAAGAGG+AGG | + | chr2.4:4502578-4502597 | MS.gene85225:CDS | 50.0% | |
| GAATTGGGAGTGGTTTCTCG+AGG | + | chr2.4:4502233-4502252 | MS.gene85225:CDS | 50.0% | |
| GATGACGATGATGAGACGCT+AGG | + | chr2.4:4502504-4502523 | MS.gene85225:CDS | 50.0% | |
| GGAATGTGGAGAATTGGGAG+TGG | + | chr2.4:4502223-4502242 | MS.gene85225:CDS | 50.0% | |
| GGAGCCTAGCAAAGAAAGTG+AGG | + | chr2.4:4502254-4502273 | MS.gene85225:CDS | 50.0% | |
| GGATCATGCCCTTTGGATAC+TGG | - | chr2.4:4502203-4502222 | None:intergenic | 50.0% | |
| GTCTGATTCAGAGCCTCCTA+AGG | + | chr2.4:4500541-4500560 | MS.gene85225:CDS | 50.0% | |
| ! | AAAGGGCATGATCCGGAATG+TGG | + | chr2.4:4502209-4502228 | MS.gene85225:CDS | 50.0% |
| ! | CGTGATGACGAGAAACAGTG+TGG | - | chr2.4:4500499-4500518 | None:intergenic | 50.0% |
| ! | TTAGACCTTGCGGAGTACCT+AGG | - | chr2.4:4502414-4502433 | None:intergenic | 50.0% |
| ATGTCGATGATGCTGTGGCG+GGG | + | chr2.4:4502619-4502638 | MS.gene85225:CDS | 55.0% | |
| GACGATGATGAGACGCTAGG+AGG | + | chr2.4:4502507-4502526 | MS.gene85225:CDS | 55.0% | |
| GATGTCGATGATGCTGTGGC+GGG | + | chr2.4:4502618-4502637 | MS.gene85225:CDS | 55.0% | |
| TGAGGATGAGGAAGAGGAGG+AGG | + | chr2.4:4502581-4502600 | MS.gene85225:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 4500404 | 4502644 | 4500404 | ID=MS.gene85225 |
| chr2.4 | mRNA | 4500404 | 4502644 | 4500404 | ID=MS.gene85225.t1;Parent=MS.gene85225 |
| chr2.4 | exon | 4500404 | 4500785 | 4500404 | ID=MS.gene85225.t1.exon1;Parent=MS.gene85225.t1 |
| chr2.4 | CDS | 4500404 | 4500785 | 4500404 | ID=cds.MS.gene85225.t1;Parent=MS.gene85225.t1 |
| chr2.4 | exon | 4502166 | 4502644 | 4502166 | ID=MS.gene85225.t1.exon2;Parent=MS.gene85225.t1 |
| chr2.4 | CDS | 4502166 | 4502644 | 4502166 | ID=cds.MS.gene85225.t1;Parent=MS.gene85225.t1 |
| Gene Sequence |
| Protein sequence |
