Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85593.t1 | RHN45016.1 | 92.1 | 305 | 24 | 0 | 346 | 650 | 425 | 729 | 1.50E-170 | 609.8 |
| MS.gene85593.t1 | RHN45016.1 | 89.2 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.60E-07 | 68.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85593.t1 | Q9Y222 | 25.8 | 256 | 173 | 7 | 371 | 621 | 156 | 399 | 3.0e-18 | 95.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85593.t1 | A0A396GV57 | 92.1 | 305 | 24 | 0 | 346 | 650 | 425 | 729 | 1.1e-170 | 609.8 |
| MS.gene85593.t1 | A0A396GV57 | 89.2 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.2e-07 | 68.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85593.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene85593 | 0.816453 | 5.49E-52 | -1.69E-46 |
| MS.gene050317 | MS.gene85593 | 0.822564 | 2.21E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene85593 | 0.833633 | 4.77E-56 | -1.69E-46 |
| MS.gene050737 | MS.gene85593 | 0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene85593 | 0.815754 | 7.86E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene85593 | 0.832436 | 9.47E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene85593 | 0.82227 | 2.59E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene85593 | 0.802202 | 6.27E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene85593 | 0.808935 | 2.42E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene85593 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene85593 | 0.838297 | 3.13E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene85593 | 0.830153 | 3.45E-55 | -1.69E-46 |
| MS.gene053381 | MS.gene85593 | 0.848574 | 5.62E-60 | -1.69E-46 |
| MS.gene054823 | MS.gene85593 | 0.812084 | 5.07E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene85593 | 0.810878 | 9.26E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene85593 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene85593 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene055979 | MS.gene85593 | 0.80333 | 3.67E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene85593 | 0.817379 | 3.40E-52 | -1.69E-46 |
| MS.gene056831 | MS.gene85593 | 0.80704 | 6.14E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene85593 | 0.802743 | 4.85E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene85593 | 0.834428 | 3.01E-56 | -1.69E-46 |
| MS.gene058654 | MS.gene85593 | 0.835227 | 1.90E-56 | -1.69E-46 |
| MS.gene059842 | MS.gene85593 | 0.819048 | 1.43E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene85593 | 0.802633 | 5.12E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene85593 | 0.830209 | 3.34E-55 | -1.69E-46 |
| MS.gene060763 | MS.gene85593 | 0.81787 | 2.64E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85593.t1 | MTR_8g077990 | 77.503 | 729 | 49 | 8 | 1 | 650 | 1 | 693 | 0.0 | 958 |
| MS.gene85593.t1 | MTR_1g076600 | 95.050 | 101 | 5 | 0 | 550 | 650 | 55 | 155 | 1.01e-66 | 216 |
| MS.gene85593.t1 | MTR_7g029435 | 93.478 | 92 | 6 | 0 | 559 | 650 | 1 | 92 | 3.45e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85593.t1 | AT5G41020 | 55.124 | 283 | 126 | 1 | 365 | 647 | 302 | 583 | 6.71e-113 | 351 |
Find 129 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAAATTCCAGCTCTTC+AGG | 0.282279 | 1.3:-55076789 | None:intergenic |
| AACAAATGATCCACCATATT+GGG | 0.286872 | 1.3:+55077273 | MS.gene85593:CDS |
| GAAGATCAAAGCAGCTGTTT+TGG | 0.293853 | 1.3:+55076584 | MS.gene85593:CDS |
| ACATTGCTTTCGGACATATA+TGG | 0.300898 | 1.3:-55075520 | None:intergenic |
| CATTGAGCAGGTGGAAGTTC+TGG | 0.301208 | 1.3:+55077316 | MS.gene85593:CDS |
| GTCACTATACTCCTTAAGTT+TGG | 0.317240 | 1.3:-55076304 | None:intergenic |
| TTGATCTTCTCATCTTCTTC+GGG | 0.322099 | 1.3:-55076570 | None:intergenic |
| TTTGATCTTCTCATCTTCTT+CGG | 0.324153 | 1.3:-55076571 | None:intergenic |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 1.3:+55077272 | MS.gene85593:CDS |
| GATAAACGCTTTATATGCTT+TGG | 0.342448 | 1.3:+55077172 | MS.gene85593:CDS |
| TATATAGATTCTCATGGTTT+GGG | 0.357329 | 1.3:+55076609 | MS.gene85593:CDS |
| GTATATAGATTCTCATGGTT+TGG | 0.365976 | 1.3:+55076608 | MS.gene85593:CDS |
| TTATGTGTGCCTTCTTCACT+TGG | 0.367399 | 1.3:-55076000 | None:intergenic |
| TCATCATCTTCACATTCATT+TGG | 0.373205 | 1.3:-55076234 | None:intergenic |
| GGAGGCAATTGGTCACAAAT+TGG | 0.375244 | 1.3:+55077049 | MS.gene85593:CDS |
| TCTCTATCTTTCAACAGGTT+AGG | 0.380269 | 1.3:-55077353 | None:intergenic |
| ACTCCTAACTCTGCACATAA+TGG | 0.384709 | 1.3:+55076459 | MS.gene85593:CDS |
| GTTCCATTATGTGCAGAGTT+AGG | 0.391649 | 1.3:-55076462 | None:intergenic |
| GAGGGCAGTAGCCGACGCTT+TGG | 0.393084 | 1.3:+55076842 | MS.gene85593:CDS |
| CAGATCAGCTACATTGCTTT+CGG | 0.400572 | 1.3:-55075530 | None:intergenic |
| CTCTATCTTTCAACAGGTTA+GGG | 0.404823 | 1.3:-55077352 | None:intergenic |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.407410 | 1.3:+55077126 | MS.gene85593:CDS |
| GGGAGACGAAGGTCTTGATA+TGG | 0.410993 | 1.3:+55076629 | MS.gene85593:CDS |
| AGGCCTCTCTATCTTTCAAC+AGG | 0.417278 | 1.3:-55077358 | None:intergenic |
| TTCCAACAGCCTCTAACCTC+GGG | 0.421209 | 1.3:-55076672 | None:intergenic |
| GTTTCATTATGTGCACAGTT+AGG | 0.421260 | 1.3:-55076438 | None:intergenic |
| TAGCCCTCTCGAGCAGATCT+AGG | 0.424550 | 1.3:-55076974 | None:intergenic |
| AAAGGGAGGGGAGGTGTAAG+TGG | 0.424706 | 1.3:+55076763 | MS.gene85593:CDS |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 1.3:+55077028 | MS.gene85593:CDS |
| TGGTTGCATGCTCCCCAATA+TGG | 0.435158 | 1.3:-55077286 | None:intergenic |
| AAATTACACCCCGAGGTTAG+AGG | 0.442409 | 1.3:+55076663 | MS.gene85593:CDS |
| AGGGCAGTAGCCGACGCTTT+GGG | 0.446431 | 1.3:+55076843 | MS.gene85593:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 1.3:+55077201 | MS.gene85593:CDS |
| CTAAACGCAAACAAGTAACT+TGG | 0.447239 | 1.3:+55076487 | MS.gene85593:CDS |
| TGCTCATGCTTTGTTAGAAA+GGG | 0.448940 | 1.3:+55076746 | MS.gene85593:CDS |
| GTGCTCATGCTTTGTTAGAA+AGG | 0.460254 | 1.3:+55076745 | MS.gene85593:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 1.3:+55077038 | MS.gene85593:CDS |
| TTTCCAACAGCCTCTAACCT+CGG | 0.465967 | 1.3:-55076673 | None:intergenic |
| ACACTGTAATGAGGCCTCTC+AGG | 0.470045 | 1.3:-55076714 | None:intergenic |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 1.3:+55077187 | MS.gene85593:CDS |
| TAGAAGCAATGGAGGTGAAG+AGG | 0.481860 | 1.3:+55076131 | MS.gene85593:CDS |
| ACGGCTTATTGCGTGGGAAA+AGG | 0.484774 | 1.3:+55076541 | MS.gene85593:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 1.3:+55077027 | MS.gene85593:CDS |
| GTCAGTGAAGTTAATGATCA+AGG | 0.490585 | 1.3:+55076366 | MS.gene85593:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 1.3:+55077193 | MS.gene85593:CDS |
| AAGAAGAAACCAAGTGAAGA+AGG | 0.493411 | 1.3:+55075991 | MS.gene85593:CDS |
| GAGTGAGGAAAGCAAACATA+AGG | 0.496559 | 1.3:+55075816 | MS.gene85593:CDS |
| AAGTGAAGAAAGTAAACATA+AGG | 0.498172 | 1.3:+55076194 | MS.gene85593:CDS |
| TGAAGGTGATAATGTCGAGC+AGG | 0.502667 | 1.3:+55075765 | MS.gene85593:CDS |
| ATAGGTCTGGTGATGTATGC+AGG | 0.510035 | 1.3:+55077240 | MS.gene85593:CDS |
| TGTAATGACTTTAGAAGCAA+TGG | 0.511180 | 1.3:+55076120 | MS.gene85593:CDS |
| AACAACTTTAGAAGCAATGA+AGG | 0.512264 | 1.3:+55075748 | MS.gene85593:CDS |
| TAAGTGGACACCTGAAGAGC+TGG | 0.512398 | 1.3:+55076779 | MS.gene85593:CDS |
| AATTGAGGAAGCCAAACTTA+AGG | 0.514474 | 1.3:+55076293 | MS.gene85593:CDS |
| AGTGACATTATAAGCAATGA+AGG | 0.517478 | 1.3:+55076321 | MS.gene85593:CDS |
| AACCAAGTCATTCATTGAGC+AGG | 0.519612 | 1.3:+55077304 | MS.gene85593:CDS |
| TTTGGGTAAAAGTCGAGATC+AGG | 0.519802 | 1.3:+55076860 | MS.gene85593:CDS |
| GAAGAAGAAGAAACTAATTG+AGG | 0.520193 | 1.3:+55076278 | MS.gene85593:CDS |
| AATCTACTTGAGCATAGGTC+TGG | 0.523977 | 1.3:+55077227 | MS.gene85593:CDS |
| AAGATGGTGAGCGAGAGAAA+AGG | 0.524139 | 1.3:+55075959 | MS.gene85593:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 1.3:+55077202 | MS.gene85593:CDS |
| AAAAGCAATAAAAGTGAAGA+TGG | 0.528970 | 1.3:+55075562 | MS.gene85593:CDS |
| CGAGCAATTAACATCAGCAT+TGG | 0.533412 | 1.3:+55077109 | MS.gene85593:CDS |
| AAGAAGCGGAAGCTAGTTGA+AGG | 0.534153 | 1.3:+55075706 | MS.gene85593:CDS |
| TTGGAGTATATAGATTCTCA+TGG | 0.535104 | 1.3:+55076603 | MS.gene85593:CDS |
| AAGTGAAGAAGGCACACATA+AGG | 0.535379 | 1.3:+55076002 | MS.gene85593:CDS |
| ACCCCGAGGTTAGAGGCTGT+TGG | 0.535419 | 1.3:+55076670 | MS.gene85593:CDS |
| AAAAGTGAAGATGGCGAGCA+AGG | 0.538269 | 1.3:+55075571 | MS.gene85593:CDS |
| CATATATGGATCACCTCCAT+TGG | 0.545409 | 1.3:-55075506 | None:intergenic |
| CATATAAAGCGTTTATCAAG+CGG | 0.546556 | 1.3:-55077166 | None:intergenic |
| ACGAGCAACATGGATCTAGT+TGG | 0.551620 | 1.3:+55076820 | MS.gene85593:CDS |
| AACTTGGGCTGATGAGGTGG+AGG | 0.553676 | 1.3:+55076503 | MS.gene85593:CDS |
| GTTTATCAAGCGGAAGTCAT+CGG | 0.557461 | 1.3:-55077156 | None:intergenic |
| ACAAGTAACTTGGGCTGATG+AGG | 0.559174 | 1.3:+55076497 | MS.gene85593:CDS |
| TGTTGTGACGGCTTATTGCG+TGG | 0.561335 | 1.3:+55076534 | MS.gene85593:CDS |
| CACCTGCTCAATGAATGACT+TGG | 0.570931 | 1.3:-55077306 | None:intergenic |
| CGGTTATACACACTGTAATG+AGG | 0.572231 | 1.3:-55076723 | None:intergenic |
| AGAAGCAATGGAGGTGAAGA+GGG | 0.572295 | 1.3:+55076132 | MS.gene85593:CDS |
| CATGCTTTGTTAGAAAGGGA+GGG | 0.573971 | 1.3:+55076750 | MS.gene85593:CDS |
| AGTAACTTGGGCTGATGAGG+TGG | 0.573985 | 1.3:+55076500 | MS.gene85593:CDS |
| AATCACAGGCTTGTTGTCAA+AGG | 0.576467 | 1.3:-55077378 | None:intergenic |
| TCATGCTTTGTTAGAAAGGG+AGG | 0.576855 | 1.3:+55076749 | MS.gene85593:CDS |
| ATGCTTTGTTAGAAAGGGAG+GGG | 0.581640 | 1.3:+55076751 | MS.gene85593:CDS |
| AACAAGCCTGTGATTTGTTG+AGG | 0.585749 | 1.3:+55077386 | MS.gene85593:CDS |
| CAAGTCATTCATTGAGCAGG+TGG | 0.586078 | 1.3:+55077307 | MS.gene85593:CDS |
| AGCAACATGGATCTAGTTGG+AGG | 0.586815 | 1.3:+55076823 | MS.gene85593:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 1.3:+55077031 | MS.gene85593:CDS |
| GAGGAGAAGTTATGTTGTGA+CGG | 0.589001 | 1.3:+55076522 | MS.gene85593:CDS |
| ACATCAGCATTGGTTGCTAG+TGG | 0.590714 | 1.3:+55077119 | MS.gene85593:CDS |
| AGAAGCAATGATGATGAAGA+TGG | 0.598793 | 1.3:+55075943 | MS.gene85593:CDS |
| GACGACGAGGGTGAAACCAA+TGG | 0.599409 | 1.3:+55075490 | MS.gene85593:CDS |
| TAAACGCAAACAAGTAACTT+GGG | 0.603412 | 1.3:+55076488 | MS.gene85593:CDS |
| TGAAGGAAACACACTTGAGG+AGG | 0.607482 | 1.3:+55075723 | MS.gene85593:CDS |
| AAACCTAGATCTGCTCGAGA+GGG | 0.608007 | 1.3:+55076971 | MS.gene85593:CDS |
| TAAACCTAGATCTGCTCGAG+AGG | 0.609475 | 1.3:+55076970 | MS.gene85593:CDS |
| TTGATCATTAACTTCACTGA+CGG | 0.613157 | 1.3:-55076364 | None:intergenic |
| AATTGAAGGAAGCACACTGA+AGG | 0.616212 | 1.3:+55075906 | MS.gene85593:CDS |
| GGGACAATCTACTTGAGCAT+AGG | 0.618965 | 1.3:+55077222 | MS.gene85593:CDS |
| TAACCTGTTGAAAGATAGAG+AGG | 0.620502 | 1.3:+55077355 | MS.gene85593:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 1.3:+55077274 | MS.gene85593:CDS |
| TCTCATGGTTTGGGAGACGA+AGG | 0.623440 | 1.3:+55076618 | MS.gene85593:CDS |
| TAGAAACCTCAACAAATCAC+AGG | 0.623480 | 1.3:-55077392 | None:intergenic |
| GAAGGTGATAATGTCGAGCA+GGG | 0.626806 | 1.3:+55075766 | MS.gene85593:CDS |
| GAAAAGACCTACGAGCAACA+TGG | 0.630731 | 1.3:+55076810 | MS.gene85593:CDS |
| TTTCTAACAAAGCATGAGCA+CGG | 0.633278 | 1.3:-55076743 | None:intergenic |
| GTGATGTATGCAGGAAACGA+TGG | 0.636494 | 1.3:+55077249 | MS.gene85593:CDS |
| TTGCATGCTCCCCAATATGG+TGG | 0.638549 | 1.3:-55077283 | None:intergenic |
| GTTGTGACGGCTTATTGCGT+GGG | 0.642851 | 1.3:+55076535 | MS.gene85593:CDS |
| GCAACATGGATCTAGTTGGA+GGG | 0.643237 | 1.3:+55076824 | MS.gene85593:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 1.3:+55077190 | MS.gene85593:CDS |
| AATGAATGTGAAGATGATGA+TGG | 0.645642 | 1.3:+55076237 | MS.gene85593:CDS |
| ACTAGATCCATGTTGCTCGT+AGG | 0.645688 | 1.3:-55076817 | None:intergenic |
| TGATGTATGCAGGAAACGAT+GGG | 0.648956 | 1.3:+55077250 | MS.gene85593:CDS |
| GAGATCAGGTAAAAGATGCG+TGG | 0.653330 | 1.3:+55076874 | MS.gene85593:CDS |
| ACTTCACTGACGGAGAAACA+AGG | 0.654623 | 1.3:-55076354 | None:intergenic |
| AAATGTGAAGCTGACGACCA+AGG | 0.655741 | 1.3:+55075862 | MS.gene85593:CDS |
| AATGACTTTAGAAGCAATGG+AGG | 0.658645 | 1.3:+55076123 | MS.gene85593:CDS |
| CTTTGTTAGAAAGGGAGGGG+AGG | 0.659450 | 1.3:+55076754 | MS.gene85593:CDS |
| GAAGGAAACACACTTGAGGA+GGG | 0.660891 | 1.3:+55075724 | MS.gene85593:CDS |
| AAAAGGACATTGGTCCCAAG+AGG | 0.666914 | 1.3:+55076923 | MS.gene85593:CDS |
| AAATGTCAAATTACACCCCG+AGG | 0.668903 | 1.3:+55076656 | MS.gene85593:CDS |
| CAAAAGAACTGAAGACGACG+AGG | 0.676138 | 1.3:+55075477 | MS.gene85593:CDS |
| TGTGAAGATGATGATGGCCA+AGG | 0.683186 | 1.3:+55076243 | MS.gene85593:CDS |
| TCCAACAGCCTCTAACCTCG+GGG | 0.692890 | 1.3:-55076671 | None:intergenic |
| AATGATTGTGAAGATGACCA+AGG | 0.698674 | 1.3:+55076045 | MS.gene85593:CDS |
| AGTTGAAGGAAACACACTTG+AGG | 0.699110 | 1.3:+55075720 | MS.gene85593:CDS |
| AAAAGAACTGAAGACGACGA+GGG | 0.720222 | 1.3:+55075478 | MS.gene85593:CDS |
| GAATGTGAAGATGATGACCA+CGG | 0.736913 | 1.3:+55075670 | MS.gene85593:CDS |
| GACGAGGGTGAAACCAATGG+AGG | 0.742823 | 1.3:+55075493 | MS.gene85593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGCAGAAATTAATTAA+AGG | + | chr1.3:55076081-55076100 | MS.gene85593:CDS | 15.0% |
| !! | AAATATACCAAAACAAAAAA+AGG | + | chr1.3:55076906-55076925 | MS.gene85593:CDS | 15.0% |
| !!! | TTGTTTTGGTATATTTTAAT+CGG | - | chr1.3:55076902-55076921 | None:intergenic | 15.0% |
| ! | AAAAGCAATAAAAGTGAAGA+TGG | + | chr1.3:55075562-55075581 | MS.gene85593:CDS | 25.0% |
| ! | AAGTGAAGAAAGTAAACATA+AGG | + | chr1.3:55076194-55076213 | MS.gene85593:CDS | 25.0% |
| ! | ATGAAAAAGAAGCTAATTGA+AGG | + | chr1.3:55075892-55075911 | MS.gene85593:CDS | 25.0% |
| ! | CCTTATAAAAAATCACAACA+TGG | + | chr1.3:55077002-55077021 | MS.gene85593:CDS | 25.0% |
| ! | TATATAGATTCTCATGGTTT+GGG | + | chr1.3:55076609-55076628 | MS.gene85593:CDS | 25.0% |
| !!! | ATAAATTTTGATACTCCTCT+TGG | - | chr1.3:55076941-55076960 | None:intergenic | 25.0% |
| !!! | ATCTTCACTTTTATTGCTTT+TGG | - | chr1.3:55075563-55075582 | None:intergenic | 25.0% |
| !!! | CCATGTTGTGATTTTTTATA+AGG | - | chr1.3:55077005-55077024 | None:intergenic | 25.0% |
| !!! | TAAATTTTGATACTCCTCTT+GGG | - | chr1.3:55076940-55076959 | None:intergenic | 25.0% |
| !!! | TTTTTTTCGTCTTTTTTCCT+TGG | - | chr1.3:55076065-55076084 | None:intergenic | 25.0% |
| AACAAATGATCCACCATATT+GGG | + | chr1.3:55077273-55077292 | MS.gene85593:CDS | 30.0% | |
| AATGAATGTGAAGATGATGA+TGG | + | chr1.3:55075667-55075686 | MS.gene85593:CDS | 30.0% | |
| AGTGACATTATAAGCAATGA+AGG | + | chr1.3:55076321-55076340 | MS.gene85593:CDS | 30.0% | |
| CCAAAACAAAAAAAGGACAT+TGG | + | chr1.3:55076913-55076932 | MS.gene85593:CDS | 30.0% | |
| GAAAAAGGAAAAATTGAGTG+AGG | + | chr1.3:55075801-55075820 | MS.gene85593:CDS | 30.0% | |
| GAAAGAAGATGAAAAAGAAG+CGG | + | chr1.3:55075692-55075711 | MS.gene85593:CDS | 30.0% | |
| GAAGAAGAAGAAACTAATTG+AGG | + | chr1.3:55076278-55076297 | MS.gene85593:CDS | 30.0% | |
| GATAAACGCTTTATATGCTT+TGG | + | chr1.3:55077172-55077191 | MS.gene85593:CDS | 30.0% | |
| GGGAAAGAAGAAAAAGAAAA+AGG | + | chr1.3:55075786-55075805 | MS.gene85593:CDS | 30.0% | |
| GTATATAGATTCTCATGGTT+TGG | + | chr1.3:55076608-55076627 | MS.gene85593:CDS | 30.0% | |
| GTTGCGAGATAATATTTGTT+GGG | + | chr1.3:55077028-55077047 | MS.gene85593:CDS | 30.0% | |
| TAAACGCAAACAAGTAACTT+GGG | + | chr1.3:55076488-55076507 | MS.gene85593:CDS | 30.0% | |
| TCATCATCTTCACATTCATT+TGG | - | chr1.3:55075667-55075686 | None:intergenic | 30.0% | |
| TGTTGCGAGATAATATTTGT+TGG | + | chr1.3:55077027-55077046 | MS.gene85593:CDS | 30.0% | |
| TTGATCATTAACTTCACTGA+CGG | - | chr1.3:55076367-55076386 | None:intergenic | 30.0% | |
| TTGGAGTATATAGATTCTCA+TGG | + | chr1.3:55076603-55076622 | MS.gene85593:CDS | 30.0% | |
| TTTGATCTTCTCATCTTCTT+CGG | - | chr1.3:55076574-55076593 | None:intergenic | 30.0% | |
| ! | AACAACTTTAGAAGCAATGA+AGG | + | chr1.3:55075748-55075767 | MS.gene85593:CDS | 30.0% |
| ! | CATATAAAGCGTTTATCAAG+CGG | - | chr1.3:55077169-55077188 | None:intergenic | 30.0% |
| ! | TCTTCTTCATTTTCTTTCCT+TGG | - | chr1.3:55076263-55076282 | None:intergenic | 30.0% |
| ! | TGTAATGACTTTAGAAGCAA+TGG | + | chr1.3:55076120-55076139 | MS.gene85593:CDS | 30.0% |
| !! | CTTTTATTGCTTTTGGTCAA+AGG | - | chr1.3:55075556-55075575 | None:intergenic | 30.0% |
| !! | TCTTTTTCATCTTCTTTCCT+TGG | - | chr1.3:55075882-55075901 | None:intergenic | 30.0% |
| !!! | CCAATGTCCTTTTTTTGTTT+TGG | - | chr1.3:55076916-55076935 | None:intergenic | 30.0% |
| !!! | GTTCTTTTGTTTTTCTTGCT+CGG | - | chr1.3:55075466-55075485 | None:intergenic | 30.0% |
| AAGAAGAAACCAAGTGAAGA+AGG | + | chr1.3:55075991-55076010 | MS.gene85593:CDS | 35.0% | |
| AATGATTGTGAAGATGACCA+AGG | + | chr1.3:55076045-55076064 | MS.gene85593:CDS | 35.0% | |
| AATTGAGGAAGCCAAACTTA+AGG | + | chr1.3:55076293-55076312 | MS.gene85593:CDS | 35.0% | |
| ACAAATGATCCACCATATTG+GGG | + | chr1.3:55077274-55077293 | MS.gene85593:CDS | 35.0% | |
| ACATTGCTTTCGGACATATA+TGG | - | chr1.3:55075523-55075542 | None:intergenic | 35.0% | |
| CTAAACGCAAACAAGTAACT+TGG | + | chr1.3:55076487-55076506 | MS.gene85593:CDS | 35.0% | |
| CTCTATCTTTCAACAGGTTA+GGG | - | chr1.3:55077355-55077374 | None:intergenic | 35.0% | |
| GAACAAATGATCCACCATAT+TGG | + | chr1.3:55077272-55077291 | MS.gene85593:CDS | 35.0% | |
| GTCACTATACTCCTTAAGTT+TGG | - | chr1.3:55076307-55076326 | None:intergenic | 35.0% | |
| GTCAGTGAAGTTAATGATCA+AGG | + | chr1.3:55076366-55076385 | MS.gene85593:CDS | 35.0% | |
| GTTTCATTATGTGCACAGTT+AGG | - | chr1.3:55076441-55076460 | None:intergenic | 35.0% | |
| TAACCTGTTGAAAGATAGAG+AGG | + | chr1.3:55077355-55077374 | MS.gene85593:CDS | 35.0% | |
| TCAATAAATTCCAGCTCTTC+AGG | - | chr1.3:55076792-55076811 | None:intergenic | 35.0% | |
| TCTCTATCTTTCAACAGGTT+AGG | - | chr1.3:55077356-55077375 | None:intergenic | 35.0% | |
| TTGATCTTCTCATCTTCTTC+GGG | - | chr1.3:55076573-55076592 | None:intergenic | 35.0% | |
| TTTCTAACAAAGCATGAGCA+CGG | - | chr1.3:55076746-55076765 | None:intergenic | 35.0% | |
| ! | AATATTTGTTGGGAGGCAAT+TGG | + | chr1.3:55077038-55077057 | MS.gene85593:CDS | 35.0% |
| ! | AATGACTTTAGAAGCAATGG+AGG | + | chr1.3:55076123-55076142 | MS.gene85593:CDS | 35.0% |
| ! | AGAAGCAATGATGATGAAGA+TGG | + | chr1.3:55075943-55075962 | MS.gene85593:CDS | 35.0% |
| ! | TGCTCATGCTTTGTTAGAAA+GGG | + | chr1.3:55076746-55076765 | MS.gene85593:CDS | 35.0% |
| !! | TCTTTTTCATCTTCTTTCCG+TGG | - | chr1.3:55075690-55075709 | None:intergenic | 35.0% |
| AAAAGAACTGAAGACGACGA+GGG | + | chr1.3:55075478-55075497 | MS.gene85593:CDS | 40.0% | |
| AAATGTCAAATTACACCCCG+AGG | + | chr1.3:55076656-55076675 | MS.gene85593:CDS | 40.0% | |
| AACCAAGTCATTCATTGAGC+AGG | + | chr1.3:55077304-55077323 | MS.gene85593:CDS | 40.0% | |
| AATCTACTTGAGCATAGGTC+TGG | + | chr1.3:55077227-55077246 | MS.gene85593:CDS | 40.0% | |
| ACTCCTAACTCTGCACATAA+TGG | + | chr1.3:55076459-55076478 | MS.gene85593:CDS | 40.0% | |
| AGTTGAAGGAAACACACTTG+AGG | + | chr1.3:55075720-55075739 | MS.gene85593:CDS | 40.0% | |
| CAGATCAGCTACATTGCTTT+CGG | - | chr1.3:55075533-55075552 | None:intergenic | 40.0% | |
| CATATATGGATCACCTCCAT+TGG | - | chr1.3:55075509-55075528 | None:intergenic | 40.0% | |
| CGAGCAATTAACATCAGCAT+TGG | + | chr1.3:55077109-55077128 | MS.gene85593:CDS | 40.0% | |
| CGGTTATACACACTGTAATG+AGG | - | chr1.3:55076726-55076745 | None:intergenic | 40.0% | |
| GAATGTGAAGATGATGACCA+CGG | + | chr1.3:55075670-55075689 | MS.gene85593:CDS | 40.0% | |
| GAGGAGAAGTTATGTTGTGA+CGG | + | chr1.3:55076522-55076541 | MS.gene85593:CDS | 40.0% | |
| GAGTGAGGAAAGCAAACATA+AGG | + | chr1.3:55075816-55075835 | MS.gene85593:CDS | 40.0% | |
| GTTCCATTATGTGCAGAGTT+AGG | - | chr1.3:55076465-55076484 | None:intergenic | 40.0% | |
| GTTTATCAAGCGGAAGTCAT+CGG | - | chr1.3:55077159-55077178 | None:intergenic | 40.0% | |
| TGATGTATGCAGGAAACGAT+GGG | + | chr1.3:55077250-55077269 | MS.gene85593:CDS | 40.0% | |
| TTATGTGTGCCTTCTTCACT+TGG | - | chr1.3:55076003-55076022 | None:intergenic | 40.0% | |
| TTTGGGTAAAAGTCGAGATC+AGG | + | chr1.3:55076860-55076879 | MS.gene85593:CDS | 40.0% | |
| ! | AAGTGAAGAAGGCACACATA+AGG | + | chr1.3:55076002-55076021 | MS.gene85593:CDS | 40.0% |
| ! | AATTGAAGGAAGCACACTGA+AGG | + | chr1.3:55075906-55075925 | MS.gene85593:CDS | 40.0% |
| ! | ATGCTTTGTTAGAAAGGGAG+GGG | + | chr1.3:55076751-55076770 | MS.gene85593:CDS | 40.0% |
| ! | CATGCTTTGTTAGAAAGGGA+GGG | + | chr1.3:55076750-55076769 | MS.gene85593:CDS | 40.0% |
| ! | GAAGATCAAAGCAGCTGTTT+TGG | + | chr1.3:55076584-55076603 | MS.gene85593:CDS | 40.0% |
| ! | GCGAGATAATATTTGTTGGG+AGG | + | chr1.3:55077031-55077050 | MS.gene85593:CDS | 40.0% |
| ! | GTGCTCATGCTTTGTTAGAA+AGG | + | chr1.3:55076745-55076764 | MS.gene85593:CDS | 40.0% |
| ! | TCATGCTTTGTTAGAAAGGG+AGG | + | chr1.3:55076749-55076768 | MS.gene85593:CDS | 40.0% |
| !! | AATCACAGGCTTGTTGTCAA+AGG | - | chr1.3:55077381-55077400 | None:intergenic | 40.0% |
| AAAAGGACATTGGTCCCAAG+AGG | + | chr1.3:55076923-55076942 | MS.gene85593:CDS | 45.0% | |
| AAAAGTGAAGATGGCGAGCA+AGG | + | chr1.3:55075571-55075590 | MS.gene85593:CDS | 45.0% | |
| AAACCTAGATCTGCTCGAGA+GGG | + | chr1.3:55076971-55076990 | MS.gene85593:CDS | 45.0% | |
| AAATGTGAAGCTGACGACCA+AGG | + | chr1.3:55075862-55075881 | MS.gene85593:CDS | 45.0% | |
| AAATTACACCCCGAGGTTAG+AGG | + | chr1.3:55076663-55076682 | MS.gene85593:CDS | 45.0% | |
| AAGAAGCGGAAGCTAGTTGA+AGG | + | chr1.3:55075706-55075725 | MS.gene85593:CDS | 45.0% | |
| AAGATGGTGAGCGAGAGAAA+AGG | + | chr1.3:55075959-55075978 | MS.gene85593:CDS | 45.0% | |
| ACAAGTAACTTGGGCTGATG+AGG | + | chr1.3:55076497-55076516 | MS.gene85593:CDS | 45.0% | |
| ACGAGCAACATGGATCTAGT+TGG | + | chr1.3:55076820-55076839 | MS.gene85593:CDS | 45.0% | |
| ACTAGATCCATGTTGCTCGT+AGG | - | chr1.3:55076820-55076839 | None:intergenic | 45.0% | |
| ACTTCACTGACGGAGAAACA+AGG | - | chr1.3:55076357-55076376 | None:intergenic | 45.0% | |
| AGAAGCAATGGAGGTGAAGA+GGG | + | chr1.3:55076132-55076151 | MS.gene85593:CDS | 45.0% | |
| AGCAACATGGATCTAGTTGG+AGG | + | chr1.3:55076823-55076842 | MS.gene85593:CDS | 45.0% | |
| AGGCCTCTCTATCTTTCAAC+AGG | - | chr1.3:55077361-55077380 | None:intergenic | 45.0% | |
| CAAAAGAACTGAAGACGACG+AGG | + | chr1.3:55075477-55075496 | MS.gene85593:CDS | 45.0% | |
| CAAGTCATTCATTGAGCAGG+TGG | + | chr1.3:55077307-55077326 | MS.gene85593:CDS | 45.0% | |
| CACCTGCTCAATGAATGACT+TGG | - | chr1.3:55077309-55077328 | None:intergenic | 45.0% | |
| GAAAAGACCTACGAGCAACA+TGG | + | chr1.3:55076810-55076829 | MS.gene85593:CDS | 45.0% | |
| GAAGGAAACACACTTGAGGA+GGG | + | chr1.3:55075724-55075743 | MS.gene85593:CDS | 45.0% | |
| GAGATCAGGTAAAAGATGCG+TGG | + | chr1.3:55076874-55076893 | MS.gene85593:CDS | 45.0% | |
| GCAACATGGATCTAGTTGGA+GGG | + | chr1.3:55076824-55076843 | MS.gene85593:CDS | 45.0% | |
| GGAGGCAATTGGTCACAAAT+TGG | + | chr1.3:55077049-55077068 | MS.gene85593:CDS | 45.0% | |
| GGGACAATCTACTTGAGCAT+AGG | + | chr1.3:55077222-55077241 | MS.gene85593:CDS | 45.0% | |
| GTGATGTATGCAGGAAACGA+TGG | + | chr1.3:55077249-55077268 | MS.gene85593:CDS | 45.0% | |
| TAAACCTAGATCTGCTCGAG+AGG | + | chr1.3:55076970-55076989 | MS.gene85593:CDS | 45.0% | |
| TAGAAGCAATGGAGGTGAAG+AGG | + | chr1.3:55076131-55076150 | MS.gene85593:CDS | 45.0% | |
| TGAAGGAAACACACTTGAGG+AGG | + | chr1.3:55075723-55075742 | MS.gene85593:CDS | 45.0% | |
| TTTCCAACAGCCTCTAACCT+CGG | - | chr1.3:55076676-55076695 | None:intergenic | 45.0% | |
| ! | ATAGGTCTGGTGATGTATGC+AGG | + | chr1.3:55077240-55077259 | MS.gene85593:CDS | 45.0% |
| ! | CATTGGTTGCTAGTGGTGAT+TGG | + | chr1.3:55077126-55077145 | MS.gene85593:CDS | 45.0% |
| ! | GAAGGTGATAATGTCGAGCA+GGG | + | chr1.3:55075766-55075785 | MS.gene85593:CDS | 45.0% |
| ! | GTGCATTTTGCTGCAAGAAG+TGG | + | chr1.3:55077084-55077103 | MS.gene85593:CDS | 45.0% |
| ! | TCGACTTTTACCCAAAGCGT+CGG | - | chr1.3:55076856-55076875 | None:intergenic | 45.0% |
| ! | TCGCAAAAAGCATACCTGAG+AGG | + | chr1.3:55076700-55076719 | MS.gene85593:CDS | 45.0% |
| ! | TGAAGGTGATAATGTCGAGC+AGG | + | chr1.3:55075765-55075784 | MS.gene85593:CDS | 45.0% |
| !! | ACATCAGCATTGGTTGCTAG+TGG | + | chr1.3:55077119-55077138 | MS.gene85593:CDS | 45.0% |
| !! | TGTGAAGATGATGATGGCCA+AGG | + | chr1.3:55076243-55076262 | MS.gene85593:CDS | 45.0% |
| ACACTGTAATGAGGCCTCTC+AGG | - | chr1.3:55076717-55076736 | None:intergenic | 50.0% | |
| ACGGCTTATTGCGTGGGAAA+AGG | + | chr1.3:55076541-55076560 | MS.gene85593:CDS | 50.0% | |
| AGTAACTTGGGCTGATGAGG+TGG | + | chr1.3:55076500-55076519 | MS.gene85593:CDS | 50.0% | |
| CATTGAGCAGGTGGAAGTTC+TGG | + | chr1.3:55077316-55077335 | MS.gene85593:CDS | 50.0% | |
| CTTTGTTAGAAAGGGAGGGG+AGG | + | chr1.3:55076754-55076773 | MS.gene85593:CDS | 50.0% | |
| GGGAGACGAAGGTCTTGATA+TGG | + | chr1.3:55076629-55076648 | MS.gene85593:CDS | 50.0% | |
| GTTGTGACGGCTTATTGCGT+GGG | + | chr1.3:55076535-55076554 | MS.gene85593:CDS | 50.0% | |
| TAAGTGGACACCTGAAGAGC+TGG | + | chr1.3:55076779-55076798 | MS.gene85593:CDS | 50.0% | |
| TGGTTGCATGCTCCCCAATA+TGG | - | chr1.3:55077289-55077308 | None:intergenic | 50.0% | |
| TGTTGTGACGGCTTATTGCG+TGG | + | chr1.3:55076534-55076553 | MS.gene85593:CDS | 50.0% | |
| TTCCAACAGCCTCTAACCTC+GGG | - | chr1.3:55076675-55076694 | None:intergenic | 50.0% | |
| TTGCATGCTCCCCAATATGG+TGG | - | chr1.3:55077286-55077305 | None:intergenic | 50.0% | |
| ! | TCTCATGGTTTGGGAGACGA+AGG | + | chr1.3:55076618-55076637 | MS.gene85593:CDS | 50.0% |
| ! | TGCTTTGGATGCTTGCTGCA+TGG | + | chr1.3:55077187-55077206 | MS.gene85593:CDS | 50.0% |
| ! | TTTGGATGCTTGCTGCATGG+AGG | + | chr1.3:55077190-55077209 | MS.gene85593:CDS | 50.0% |
| AACTTGGGCTGATGAGGTGG+AGG | + | chr1.3:55076503-55076522 | MS.gene85593:CDS | 55.0% | |
| CTGCATGGAGGAGGTAGACT+GGG | + | chr1.3:55077202-55077221 | MS.gene85593:CDS | 55.0% | |
| GACGACGAGGGTGAAACCAA+TGG | + | chr1.3:55075490-55075509 | MS.gene85593:CDS | 55.0% | |
| GACGAGGGTGAAACCAATGG+AGG | + | chr1.3:55075493-55075512 | MS.gene85593:CDS | 55.0% | |
| TAGCCCTCTCGAGCAGATCT+AGG | - | chr1.3:55076977-55076996 | None:intergenic | 55.0% | |
| TCCAACAGCCTCTAACCTCG+GGG | - | chr1.3:55076674-55076693 | None:intergenic | 55.0% | |
| ! | AAAGGGAGGGGAGGTGTAAG+TGG | + | chr1.3:55076763-55076782 | MS.gene85593:CDS | 55.0% |
| ACCCCGAGGTTAGAGGCTGT+TGG | + | chr1.3:55076670-55076689 | MS.gene85593:CDS | 60.0% | |
| AGGGCAGTAGCCGACGCTTT+GGG | + | chr1.3:55076843-55076862 | MS.gene85593:CDS | 60.0% | |
| GCTGCATGGAGGAGGTAGAC+TGG | + | chr1.3:55077201-55077220 | MS.gene85593:CDS | 60.0% | |
| ! | GGATGCTTGCTGCATGGAGG+AGG | + | chr1.3:55077193-55077212 | MS.gene85593:CDS | 60.0% |
| GAGGGCAGTAGCCGACGCTT+TGG | + | chr1.3:55076842-55076861 | MS.gene85593:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 55075454 | 55077406 | 55075454 | ID=MS.gene85593 |
| chr1.3 | mRNA | 55075454 | 55077406 | 55075454 | ID=MS.gene85593.t1;Parent=MS.gene85593 |
| chr1.3 | exon | 55075454 | 55077406 | 55075454 | ID=MS.gene85593.t1.exon1;Parent=MS.gene85593.t1 |
| chr1.3 | CDS | 55075454 | 55077406 | 55075454 | ID=cds.MS.gene85593.t1;Parent=MS.gene85593.t1 |
| Gene Sequence |
| Protein sequence |
