Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87657.t1 | XP_003601009.1 | 97.4 | 155 | 4 | 0 | 1 | 155 | 1 | 155 | 1.20E-76 | 295.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87657.t1 | G7J2F5 | 97.4 | 155 | 4 | 0 | 1 | 155 | 1 | 155 | 8.4e-77 | 295.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene87657 | 0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene87657 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene87657 | 0.827531 | 1.49E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene87657 | 0.813477 | 2.51E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene87657 | 0.825066 | 5.74E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene87657 | -0.816836 | 4.50E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene87657 | 0.830491 | 2.85E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene87657 | 0.820545 | 6.48E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene87657 | 0.819692 | 1.02E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene87657 | 0.809258 | 2.07E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene87657 | 0.833469 | 5.24E-56 | -1.69E-46 |
| MS.gene050953 | MS.gene87657 | 0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene051983 | MS.gene87657 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene87657 | 0.875966 | 2.03E-68 | -1.69E-46 |
| MS.gene052309 | MS.gene87657 | -0.830522 | 2.80E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene87657 | -0.818724 | 1.69E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene87657 | 0.802711 | 4.93E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene87657 | 0.83967 | 1.38E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene87657 | 0.807955 | 3.93E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene87657 | 0.812423 | 4.27E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene87657 | 0.822895 | 1.85E-53 | -1.69E-46 |
| MS.gene056087 | MS.gene87657 | 0.830865 | 2.31E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene87657 | 0.801528 | 8.63E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene87657 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene87657 | 0.813403 | 2.61E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene87657 | 0.810721 | 1.00E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene87657 | 0.812844 | 3.46E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene87657 | 0.825444 | 4.67E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene87657 | -0.851714 | 7.41E-61 | -1.69E-46 |
| MS.gene061114 | MS.gene87657 | -0.814773 | 1.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87657.t1 | MTR_3g072010 | 97.419 | 155 | 4 | 0 | 1 | 155 | 1 | 155 | 9.69e-111 | 311 |
| MS.gene87657.t1 | MTR_7g071210 | 62.921 | 89 | 33 | 0 | 66 | 154 | 12 | 100 | 1.23e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87657.t1 | AT5G05360 | 43.976 | 166 | 76 | 4 | 1 | 152 | 1 | 163 | 8.42e-41 | 134 |
| MS.gene87657.t1 | AT5G05360 | 43.137 | 153 | 70 | 4 | 1 | 139 | 1 | 150 | 4.51e-35 | 120 |
| MS.gene87657.t1 | AT2G38450 | 60.494 | 81 | 32 | 0 | 67 | 147 | 55 | 135 | 7.35e-32 | 111 |
| MS.gene87657.t1 | AT2G38450 | 59.184 | 49 | 20 | 0 | 67 | 115 | 55 | 103 | 9.26e-16 | 69.7 |
Find 40 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCGGTCTTGTTGTTTCT+TGG | 0.311175 | 3.1:+58821585 | None:intergenic |
| GATACGGGTTGGGTTTGTTT+TGG | 0.339121 | 3.1:+58821637 | None:intergenic |
| CAAATGTATTGCTCTGGATA+TGG | 0.370151 | 3.1:-58821409 | MS.gene87657:CDS |
| TCCACAGGCTCCACCTTCTT+CGG | 0.388108 | 3.1:+58821541 | None:intergenic |
| CAAGAAGTCGAAATTCAGTT+TGG | 0.410256 | 3.1:-58820127 | MS.gene87657:CDS |
| GTGGTTTCACGATACGCTTA+AGG | 0.417498 | 3.1:-58821473 | MS.gene87657:CDS |
| ACTTGAAAGATCCCCACGTT+TGG | 0.417801 | 3.1:+58821447 | None:intergenic |
| CTGGTTCAATGATACGGGTT+GGG | 0.430102 | 3.1:+58821627 | None:intergenic |
| CTTTCAAGTCAAGTTCTTGT+TGG | 0.438409 | 3.1:-58821433 | MS.gene87657:CDS |
| TGGTTCGTGCAGCGATGAAC+TGG | 0.442996 | 3.1:+58821608 | None:intergenic |
| ACAAGACCGCACTGTTGTTA+AGG | 0.443164 | 3.1:-58821575 | MS.gene87657:CDS |
| AAACTCGAATAGCTCTTTCC+AGG | 0.469121 | 3.1:-58821519 | MS.gene87657:CDS |
| TGATTCGGATTCAAGTGAAA+TGG | 0.478803 | 3.1:-58819986 | MS.gene87657:CDS |
| GTTGGTCAAATGTATTGCTC+TGG | 0.481330 | 3.1:-58821415 | MS.gene87657:CDS |
| AGGTTATAGAGCAAGTGATT+CGG | 0.501656 | 3.1:-58820001 | MS.gene87657:CDS |
| GATGAACTGGTTCAATGATA+CGG | 0.513998 | 3.1:+58821621 | None:intergenic |
| GCGGTCTTGTTGTTTCTTGG+TGG | 0.525060 | 3.1:+58821588 | None:intergenic |
| GGTGGAATCGCCGCCGAAGA+AGG | 0.532810 | 3.1:-58821554 | MS.gene87657:CDS |
| TTCTTGTCGCACAGAGTCAA+AGG | 0.533961 | 3.1:+58821699 | None:intergenic |
| AAACCACCGATGAGTGCAAT+CGG | 0.533991 | 3.1:+58821489 | None:intergenic |
| ATGAACTGGTTCAATGATAC+GGG | 0.546395 | 3.1:+58821622 | None:intergenic |
| CGCTTAAGGAGGCCAAACGT+GGG | 0.554828 | 3.1:-58821459 | MS.gene87657:CDS |
| TGTTTCTAGAAATCCTCAAA+AGG | 0.559783 | 3.1:-58821386 | MS.gene87657:intron |
| ACGCTTAAGGAGGCCAAACG+TGG | 0.562570 | 3.1:-58821460 | MS.gene87657:CDS |
| ACTGGTTCAATGATACGGGT+TGG | 0.564172 | 3.1:+58821626 | None:intergenic |
| TGGTTGCCGATTGCACTCAT+CGG | 0.567470 | 3.1:-58821495 | MS.gene87657:CDS |
| GCCGAAGAAGGTGGAGCCTG+TGG | 0.572829 | 3.1:-58821542 | MS.gene87657:CDS |
| AGAGCTATTCGAGTTTCCAC+AGG | 0.573631 | 3.1:+58821526 | None:intergenic |
| AGTGCAATCGGCAACCACCC+TGG | 0.583008 | 3.1:+58821501 | None:intergenic |
| GGAATCGCCGCCGAAGAAGG+TGG | 0.584881 | 3.1:-58821551 | MS.gene87657:CDS |
| TTGCCGATTGCACTCATCGG+TGG | 0.591814 | 3.1:-58821492 | MS.gene87657:CDS |
| AACTCGAATAGCTCTTTCCA+GGG | 0.616905 | 3.1:-58821518 | MS.gene87657:CDS |
| TTCGGATTCAAGTGAAATGG+AGG | 0.617025 | 3.1:-58819983 | MS.gene87657:CDS |
| TGTGTTTATAGGGACATGCA+TGG | 0.630942 | 3.1:-58820163 | MS.gene87657:intron |
| GTTTCACGATACGCTTAAGG+AGG | 0.639685 | 3.1:-58821470 | MS.gene87657:CDS |
| AGACCGCACTGTTGTTAAGG+TGG | 0.642343 | 3.1:-58821572 | MS.gene87657:CDS |
| ACAGGCTCCACCTTCTTCGG+CGG | 0.656515 | 3.1:+58821544 | None:intergenic |
| GCTTAAGGAGGCCAAACGTG+GGG | 0.679928 | 3.1:-58821458 | MS.gene87657:CDS |
| TCGAATAGCTCTTTCCAGGG+TGG | 0.692357 | 3.1:-58821515 | MS.gene87657:CDS |
| ATTCCACCTTAACAACAGTG+CGG | 0.796242 | 3.1:+58821569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAATAAGAAACAATC+AGG | + | chr3.1:58821648-58821667 | None:intergenic | 20.0% |
| !! | ACTCAACAATTATAACAAAA+AGG | + | chr3.1:58820851-58820870 | None:intergenic | 20.0% |
| !! | ATTATAACAAAAAGGGTTAT+AGG | + | chr3.1:58820843-58820862 | None:intergenic | 20.0% |
| !! | ATTGACGGTAAAATATTATA+CGG | + | chr3.1:58821338-58821357 | None:intergenic | 20.0% |
| !! | CTCAACAATTATAACAAAAA+GGG | + | chr3.1:58820850-58820869 | None:intergenic | 20.0% |
| !! | TCATAATTCATAAGACATTT+GGG | - | chr3.1:58820424-58820443 | MS.gene87657:intron | 20.0% |
| !! | TTGTTATCTACTTTCAAATA+TGG | - | chr3.1:58821256-58821275 | MS.gene87657:intron | 20.0% |
| !!! | TTAGCAACAATTTGATTTTA+TGG | - | chr3.1:58820549-58820568 | MS.gene87657:intron | 20.0% |
| !!! | TTCTTATTTTGTTTACATAC+AGG | - | chr3.1:58821654-58821673 | MS.gene87657:CDS | 20.0% |
| !!! | TTTGTTATAATTGTTGAGTA+TGG | - | chr3.1:58820852-58820871 | MS.gene87657:intron | 20.0% |
| ! | ACAAGGCATATATAATACTA+CGG | + | chr3.1:58821020-58821039 | None:intergenic | 25.0% |
| ! | ACACTAATGTGAAATGATAT+AGG | - | chr3.1:58820367-58820386 | MS.gene87657:intron | 25.0% |
| ! | AGTGAAGAATAACACAATAT+TGG | + | chr3.1:58820752-58820771 | None:intergenic | 25.0% |
| ! | ATTAGTACTTGAGTGAATTA+GGG | + | chr3.1:58821054-58821073 | None:intergenic | 25.0% |
| ! | CACTAATGTGAAATGATATA+GGG | - | chr3.1:58820368-58820387 | MS.gene87657:intron | 25.0% |
| ! | GACTTATTTAAGCTTATCTA+CGG | - | chr3.1:58820401-58820420 | MS.gene87657:intron | 25.0% |
| ! | GTCATAATTCATAAGACATT+TGG | - | chr3.1:58820423-58820442 | MS.gene87657:intron | 25.0% |
| ! | TATTAGTACTTGAGTGAATT+AGG | + | chr3.1:58821055-58821074 | None:intergenic | 25.0% |
| ! | TGTTACAAACTGTGTTTATA+GGG | - | chr3.1:58821502-58821521 | MS.gene87657:CDS | 25.0% |
| ! | TTCACTCAAGTACTAATATA+TGG | - | chr3.1:58821057-58821076 | MS.gene87657:intron | 25.0% |
| !! | AAGAAAAAAAAGACCTTTTG+AGG | + | chr3.1:58820305-58820324 | None:intergenic | 25.0% |
| !!! | TACTTTTGTTATGTCATGTT+TGG | + | chr3.1:58820706-58820725 | None:intergenic | 25.0% |
| !!! | TTTTGTTGTAATCCAAATTC+TGG | - | chr3.1:58821311-58821330 | MS.gene87657:intron | 25.0% |
| ATATTATACGGACCAGAATT+TGG | + | chr3.1:58821326-58821345 | None:intergenic | 30.0% | |
| ATTAGTGTGTGTAAGTGTAA+TGG | + | chr3.1:58820355-58820374 | None:intergenic | 30.0% | |
| GTGTTACAAACTGTGTTTAT+AGG | - | chr3.1:58821501-58821520 | MS.gene87657:CDS | 30.0% | |
| ! | AAGTCTTATCTCACTAAGTT+GGG | + | chr3.1:58820598-58820617 | None:intergenic | 30.0% |
| ! | ATAAGACATTTGGGATTGTT+TGG | - | chr3.1:58820433-58820452 | MS.gene87657:intron | 30.0% |
| ! | TAAGACATTTGGGATTGTTT+GGG | - | chr3.1:58820434-58820453 | MS.gene87657:intron | 30.0% |
| ! | TTTACCGTCAATTGCATTTT+GGG | - | chr3.1:58821346-58821365 | MS.gene87657:intron | 30.0% |
| ! | TTTTACCGTCAATTGCATTT+TGG | - | chr3.1:58821345-58821364 | MS.gene87657:intron | 30.0% |
| !! | TGTTTCTAGAAATCCTCAAA+AGG | - | chr3.1:58820289-58820308 | MS.gene87657:intron | 30.0% |
| AACCAACAAGTTTATGAGCA+GGG | + | chr3.1:58821462-58821481 | None:intergenic | 35.0% | |
| ACACAGTTTGTAACACAGTA+TGG | + | chr3.1:58821497-58821516 | None:intergenic | 35.0% | |
| AGAACCCAAAATGCAATTGA+CGG | + | chr3.1:58821353-58821372 | None:intergenic | 35.0% | |
| AGGTTATAGAGCAAGTGATT+CGG | - | chr3.1:58821674-58821693 | MS.gene87657:CDS | 35.0% | |
| ATAACGCAAATCGCAAACAA+TGG | + | chr3.1:58821156-58821175 | None:intergenic | 35.0% | |
| CAAGAAGTCGAAATTCAGTT+TGG | - | chr3.1:58821548-58821567 | MS.gene87657:CDS | 35.0% | |
| TCATACACAGACACAAAAGA+GGG | - | chr3.1:58820876-58820895 | MS.gene87657:intron | 35.0% | |
| TTAGGGTTTACAGTACTACA+AGG | + | chr3.1:58821037-58821056 | None:intergenic | 35.0% | |
| TTCATACACAGACACAAAAG+AGG | - | chr3.1:58820875-58820894 | MS.gene87657:intron | 35.0% | |
| ! | AAGAAAATTTTCCAACCTCC+CGG | + | chr3.1:58820808-58820827 | None:intergenic | 35.0% |
| ! | ATGAACTGGTTCAATGATAC+GGG | + | chr3.1:58820056-58820075 | None:intergenic | 35.0% |
| ! | CAAATGTATTGCTCTGGATA+TGG | - | chr3.1:58820266-58820285 | MS.gene87657:intron | 35.0% |
| ! | CAAGTCTTATCTCACTAAGT+TGG | + | chr3.1:58820599-58820618 | None:intergenic | 35.0% |
| ! | CGTTTTCAGCTTATTTCAGT+AGG | - | chr3.1:58820497-58820516 | MS.gene87657:intron | 35.0% |
| ! | CTTTCAAGTCAAGTTCTTGT+TGG | - | chr3.1:58820242-58820261 | MS.gene87657:intron | 35.0% |
| ! | GATGAACTGGTTCAATGATA+CGG | + | chr3.1:58820057-58820076 | None:intergenic | 35.0% |
| ! | TGATTCGGATTCAAGTGAAA+TGG | - | chr3.1:58821689-58821708 | MS.gene87657:CDS | 35.0% |
| ! | TGTGTTATTCTTCACTGCTT+TGG | - | chr3.1:58820756-58820775 | MS.gene87657:intron | 35.0% |
| AAACTCGAATAGCTCTTTCC+AGG | - | chr3.1:58820156-58820175 | MS.gene87657:intron | 40.0% | |
| AACTCGAATAGCTCTTTCCA+GGG | - | chr3.1:58820157-58820176 | MS.gene87657:intron | 40.0% | |
| AGGCTCACTAAGATAGCTAA+TGG | - | chr3.1:58820517-58820536 | MS.gene87657:intron | 40.0% | |
| ATTCCACCTTAACAACAGTG+CGG | + | chr3.1:58820109-58820128 | None:intergenic | 40.0% | |
| ATTGTCCGATCTGTGTAACA+AGG | - | chr3.1:58821121-58821140 | MS.gene87657:intron | 40.0% | |
| CATACACAGACACAAAAGAG+GGG | - | chr3.1:58820877-58820896 | MS.gene87657:intron | 40.0% | |
| GAACCAACAAGTTTATGAGC+AGG | + | chr3.1:58821463-58821482 | None:intergenic | 40.0% | |
| GTTGGTCAAATGTATTGCTC+TGG | - | chr3.1:58820260-58820279 | MS.gene87657:intron | 40.0% | |
| TGATCCCTTGTTACACAGAT+CGG | + | chr3.1:58821129-58821148 | None:intergenic | 40.0% | |
| TGTGTTTATAGGGACATGCA+TGG | - | chr3.1:58821512-58821531 | MS.gene87657:CDS | 40.0% | |
| TTCCCTGCTCATAAACTTGT+TGG | - | chr3.1:58821457-58821476 | MS.gene87657:CDS | 40.0% | |
| TTCGGATTCAAGTGAAATGG+AGG | - | chr3.1:58821692-58821711 | MS.gene87657:CDS | 40.0% | |
| TTGTCCGATCTGTGTAACAA+GGG | - | chr3.1:58821122-58821141 | MS.gene87657:intron | 40.0% | |
| ! | CTTATCTCACTAAGTTGGGT+CGG | + | chr3.1:58820594-58820613 | None:intergenic | 40.0% |
| !!! | GTTGGGTTTGTTTTGGTCTA+TGG | + | chr3.1:58820034-58820053 | None:intergenic | 40.0% |
| AAACCACCGATGAGTGCAAT+CGG | + | chr3.1:58820189-58820208 | None:intergenic | 45.0% | |
| ACAAGACCGCACTGTTGTTA+AGG | - | chr3.1:58820100-58820119 | MS.gene87657:intron | 45.0% | |
| ACTTGAAAGATCCCCACGTT+TGG | + | chr3.1:58820231-58820250 | None:intergenic | 45.0% | |
| ATAAGACAGAGCAGCTTACC+TGG | + | chr3.1:58821592-58821611 | None:intergenic | 45.0% | |
| CAACTAAGCGAAAAACCTCC+AGG | - | chr3.1:58821571-58821590 | MS.gene87657:CDS | 45.0% | |
| CAGGACAAGCAAAACCAAAC+TGG | + | chr3.1:58821629-58821648 | None:intergenic | 45.0% | |
| CTGGTTCAATGATACGGGTT+GGG | + | chr3.1:58820051-58820070 | None:intergenic | 45.0% | |
| GGGATTGTTTGGGAGAACTT+AGG | - | chr3.1:58820444-58820463 | MS.gene87657:intron | 45.0% | |
| GTGCAGTTATTGAGCCAGTT+TGG | - | chr3.1:58821612-58821631 | MS.gene87657:CDS | 45.0% | |
| GTGGTTTCACGATACGCTTA+AGG | - | chr3.1:58820202-58820221 | MS.gene87657:intron | 45.0% | |
| GTTTCACGATACGCTTAAGG+AGG | - | chr3.1:58820205-58820224 | MS.gene87657:intron | 45.0% | |
| TTCTTGTCGCACAGAGTCAA+AGG | + | chr3.1:58819979-58819998 | None:intergenic | 45.0% | |
| ! | ACTGGTTCAATGATACGGGT+TGG | + | chr3.1:58820052-58820071 | None:intergenic | 45.0% |
| ! | AGAGCTATTCGAGTTTCCAC+AGG | + | chr3.1:58820152-58820171 | None:intergenic | 45.0% |
| !! | AGTGCGGTCTTGTTGTTTCT+TGG | + | chr3.1:58820093-58820112 | None:intergenic | 45.0% |
| !! | CTGCTTTGGAAATGAAGCTG+AGG | - | chr3.1:58820770-58820789 | MS.gene87657:intron | 45.0% |
| !! | GGTTCTGAATCTCGTTCAGT+TGG | - | chr3.1:58821367-58821386 | MS.gene87657:intron | 45.0% |
| !! | TCAGGGGCATTGTTGTAATC+TGG | - | chr3.1:58820993-58821012 | MS.gene87657:intron | 45.0% |
| !!! | GATACGGGTTGGGTTTGTTT+TGG | + | chr3.1:58820041-58820060 | None:intergenic | 45.0% |
| ACAGACACAAAAGAGGGGCA+AGG | - | chr3.1:58820882-58820901 | MS.gene87657:intron | 50.0% | |
| AGACACAAAAGAGGGGCAAG+GGG | - | chr3.1:58820884-58820903 | MS.gene87657:intron | 50.0% | |
| AGACCGCACTGTTGTTAAGG+TGG | - | chr3.1:58820103-58820122 | MS.gene87657:intron | 50.0% | |
| CAGACACAAAAGAGGGGCAA+GGG | - | chr3.1:58820883-58820902 | MS.gene87657:intron | 50.0% | |
| CTGAGGTTAGATACAGTGCC+GGG | - | chr3.1:58820787-58820806 | MS.gene87657:intron | 50.0% | |
| GCTGAGGTTAGATACAGTGC+CGG | - | chr3.1:58820786-58820805 | MS.gene87657:intron | 50.0% | |
| TCGAATAGCTCTTTCCAGGG+TGG | - | chr3.1:58820160-58820179 | MS.gene87657:intron | 50.0% | |
| ! | TGGTTGCCGATTGCACTCAT+CGG | - | chr3.1:58820180-58820199 | MS.gene87657:intron | 50.0% |
| !! | GCGGTCTTGTTGTTTCTTGG+TGG | + | chr3.1:58820090-58820109 | None:intergenic | 50.0% |
| ACGCTTAAGGAGGCCAAACG+TGG | - | chr3.1:58820215-58820234 | MS.gene87657:intron | 55.0% | |
| AGACAGAGCAGCTTACCTGG+AGG | + | chr3.1:58821589-58821608 | None:intergenic | 55.0% | |
| CGCTTAAGGAGGCCAAACGT+GGG | - | chr3.1:58820216-58820235 | MS.gene87657:intron | 55.0% | |
| CTCCCTCAGCCCTTGCATTT+GGG | - | chr3.1:58820939-58820958 | MS.gene87657:intron | 55.0% | |
| GCTTAAGGAGGCCAAACGTG+GGG | - | chr3.1:58820217-58820236 | MS.gene87657:intron | 55.0% | |
| TCCACAGGCTCCACCTTCTT+CGG | + | chr3.1:58820137-58820156 | None:intergenic | 55.0% | |
| TCCCTCAGCCCTTGCATTTG+GGG | - | chr3.1:58820940-58820959 | MS.gene87657:intron | 55.0% | |
| TGGTTCGTGCAGCGATGAAC+TGG | + | chr3.1:58820070-58820089 | None:intergenic | 55.0% | |
| ! | AGGTTAGATACAGTGCCGGG+AGG | - | chr3.1:58820790-58820809 | MS.gene87657:intron | 55.0% |
| ! | TAGATACAGTGCCGGGAGGT+TGG | - | chr3.1:58820794-58820813 | MS.gene87657:intron | 55.0% |
| ! | TTGCCGATTGCACTCATCGG+TGG | - | chr3.1:58820183-58820202 | MS.gene87657:intron | 55.0% |
| AAAAGAGGGGCAAGGGGCAG+GGG | - | chr3.1:58820890-58820909 | MS.gene87657:intron | 60.0% | |
| ACAAAAGAGGGGCAAGGGGC+AGG | - | chr3.1:58820888-58820907 | MS.gene87657:intron | 60.0% | |
| ACAGGCTCCACCTTCTTCGG+CGG | + | chr3.1:58820134-58820153 | None:intergenic | 60.0% | |
| ACCCCCAAATGCAAGGGCTG+AGG | + | chr3.1:58820945-58820964 | None:intergenic | 60.0% | |
| AGACCCACAGCTGCACTTGC+AGG | - | chr3.1:58821396-58821415 | MS.gene87657:CDS | 60.0% | |
| AGCCCTTGCATTTGGGGGTG+CGG | - | chr3.1:58820946-58820965 | MS.gene87657:intron | 60.0% | |
| AGTGCAATCGGCAACCACCC+TGG | + | chr3.1:58820177-58820196 | None:intergenic | 60.0% | |
| CAAAAGAGGGGCAAGGGGCA+GGG | - | chr3.1:58820889-58820908 | MS.gene87657:intron | 60.0% | |
| CAGCCTGCAAGTGCAGCTGT+GGG | + | chr3.1:58821402-58821421 | None:intergenic | 60.0% | |
| CCCCCAAATGCAAGGGCTGA+GGG | + | chr3.1:58820944-58820963 | None:intergenic | 60.0% | |
| CCCTCAGCCCTTGCATTTGG+GGG | - | chr3.1:58820941-58820960 | MS.gene87657:intron | 60.0% | |
| GCTCCCTCAGCCCTTGCATT+TGG | - | chr3.1:58820938-58820957 | MS.gene87657:intron | 60.0% | |
| AATGCCCCTGACCCGTACCG+TGG | + | chr3.1:58820984-58821003 | None:intergenic | 65.0% | |
| ATGCCCCTGACCCGTACCGT+GGG | + | chr3.1:58820983-58821002 | None:intergenic | 65.0% | |
| CCCCGCACCCCCAAATGCAA+GGG | + | chr3.1:58820951-58820970 | None:intergenic | 65.0% | |
| GCAGCCTGCAAGTGCAGCTG+TGG | + | chr3.1:58821403-58821422 | None:intergenic | 65.0% | |
| GCCGAAGAAGGTGGAGCCTG+TGG | - | chr3.1:58820133-58820152 | MS.gene87657:CDS | 65.0% | |
| GGAATCGCCGCCGAAGAAGG+TGG | - | chr3.1:58820124-58820143 | MS.gene87657:CDS | 65.0% | |
| GGTGGAATCGCCGCCGAAGA+AGG | - | chr3.1:58820121-58820140 | MS.gene87657:CDS | 65.0% | |
| ! | CCCTTGCATTTGGGGGTGCG+GGG | - | chr3.1:58820948-58820967 | MS.gene87657:intron | 65.0% |
| ! | CCTTGCATTTGGGGGTGCGG+GGG | - | chr3.1:58820949-58820968 | MS.gene87657:intron | 65.0% |
| ! | GCCCTTGCATTTGGGGGTGC+GGG | - | chr3.1:58820947-58820966 | MS.gene87657:intron | 65.0% |
| AGCCCCCACGGTACGGGTCA+GGG | - | chr3.1:58820976-58820995 | MS.gene87657:intron | 70.0% | |
| CCCCCGCACCCCCAAATGCA+AGG | + | chr3.1:58820952-58820971 | None:intergenic | 70.0% | |
| GGCGATAGCCCCCACGGTAC+GGG | - | chr3.1:58820970-58820989 | MS.gene87657:intron | 70.0% | |
| GGGCGATAGCCCCCACGGTA+CGG | - | chr3.1:58820969-58820988 | MS.gene87657:intron | 70.0% | |
| TAGCCCCCACGGTACGGGTC+AGG | - | chr3.1:58820975-58820994 | MS.gene87657:intron | 70.0% | |
| TGCCCCTGACCCGTACCGTG+GGG | + | chr3.1:58820982-58821001 | None:intergenic | 70.0% | |
| GCCCCCACGGTACGGGTCAG+GGG | - | chr3.1:58820977-58820996 | MS.gene87657:intron | 75.0% | |
| GCCCCTGACCCGTACCGTGG+GGG | + | chr3.1:58820981-58821000 | None:intergenic | 75.0% | |
| TGCGGGGGCGATAGCCCCCA+CGG | - | chr3.1:58820964-58820983 | MS.gene87657:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 58819966 | 58821731 | 58819966 | ID=MS.gene87657 |
| chr3.1 | mRNA | 58819966 | 58821731 | 58819966 | ID=MS.gene87657.t1;Parent=MS.gene87657 |
| chr3.1 | exon | 58821387 | 58821731 | 58821387 | ID=MS.gene87657.t1.exon1;Parent=MS.gene87657.t1 |
| chr3.1 | CDS | 58821387 | 58821731 | 58821387 | ID=cds.MS.gene87657.t1;Parent=MS.gene87657.t1 |
| chr3.1 | exon | 58820105 | 58820174 | 58820105 | ID=MS.gene87657.t1.exon2;Parent=MS.gene87657.t1 |
| chr3.1 | CDS | 58820105 | 58820174 | 58820105 | ID=cds.MS.gene87657.t1;Parent=MS.gene87657.t1 |
| chr3.1 | exon | 58819966 | 58820021 | 58819966 | ID=MS.gene87657.t1.exon3;Parent=MS.gene87657.t1 |
| chr3.1 | CDS | 58819966 | 58820021 | 58819966 | ID=cds.MS.gene87657.t1;Parent=MS.gene87657.t1 |
| Gene Sequence |
| Protein sequence |
