AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88365

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88365.t1 MTR_2g080230 95.308 341 16 0 1 341 1 341 0.0 680
MS.gene88365.t1 MTR_2g080260 95.894 341 14 0 1 341 1 341 0.0 668
MS.gene88365.t1 MTR_8g464300 69.069 333 102 1 10 341 9 341 9.66e-174 486
MS.gene88365.t1 MTR_4g059670 47.917 288 143 4 38 322 112 395 1.07e-93 285
MS.gene88365.t1 MTR_4g059630 46.667 285 146 4 41 322 105 386 1.28e-91 279
MS.gene88365.t1 MTR_2g021580 41.509 318 153 8 33 341 38 331 6.18e-80 247
MS.gene88365.t1 MTR_2g030835 41.509 318 153 8 33 341 37 330 1.19e-78 244
MS.gene88365.t1 MTR_2g030825 40.938 320 156 8 31 341 300 595 2.21e-76 246
MS.gene88365.t1 MTR_2g030845 40.952 315 163 7 31 341 301 596 1.70e-75 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88365.t1 AT5G54370 60.355 338 127 3 7 341 4 337 5.64e-156 441
MS.gene88365.t1 AT1G54890 58.806 335 129 4 16 341 13 347 7.11e-149 423
MS.gene88365.t1 AT4G27400 54.762 336 143 3 13 341 8 341 1.18e-137 394
MS.gene88365.t1 AT5G60530 49.474 285 138 4 34 314 153 435 3.24e-98 298
MS.gene88365.t1 AT5G60520 51.264 277 130 4 34 307 53 327 6.98e-97 291
MS.gene88365.t1 AT3G19430 40.064 312 166 6 34 341 288 582 2.35e-77 248
MS.gene88365.t1 AT3G19430 40.064 312 166 6 34 341 265 559 2.44e-77 247

Find 86 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCACACCATCATCAATT+TGG 0.212135 2.3:+17450482 MS.gene88365:CDS
AGATAGCAAACTTTGTCTTT+TGG 0.252280 2.3:-17449936 None:intergenic
ACAGATATTTCAGCAACTTC+TGG 0.256973 2.3:-17450649 None:intergenic
CATCAGGAATCTGATAATTA+TGG 0.264771 2.3:-17450708 None:intergenic
ATTGCCACGCCTGGCTTTGC+CGG 0.284921 2.3:-17450832 None:intergenic
GATCCGCGACCATTACAATT+TGG 0.285841 2.3:-17450253 None:intergenic
TCCAAGAACTCCTTCAACTT+TGG 0.319801 2.3:-17450782 None:intergenic
GATGTGCAGTTCAAATTCTA+TGG 0.321248 2.3:+17450751 MS.gene88365:CDS
CACGTAGAGAGGTGACCTTC+AGG 0.324319 2.3:-17450559 None:intergenic
TCCAAAGTTGAAGGAGTTCT+TGG 0.337116 2.3:+17450781 MS.gene88365:CDS
TAAAACGAGCATTGATTTGA+AGG 0.368629 2.3:-17450372 None:intergenic
GGGTTAGCTGGTGATCTTGA+AGG 0.383234 2.3:-17449915 None:intergenic
CAGATATTTCAGCAACTTCT+GGG 0.400574 2.3:-17450648 None:intergenic
AGCCACACCATCATCAATTT+GGG 0.401698 2.3:+17450483 MS.gene88365:CDS
GAAGGCTTGGAGATTGAATA+TGG 0.405534 2.3:+17450952 MS.gene88365:CDS
GATCTGCATGCTTGGACCCT+CGG 0.418311 2.3:+17450272 MS.gene88365:CDS
GGCGTGGCAATGCCGGTCAT+TGG 0.420807 2.3:+17450844 MS.gene88365:CDS
TATACTTGGATTCAAGCATT+GGG 0.425530 2.3:+17450427 MS.gene88365:CDS
TGAGAAAACAACGGCTCTTA+CGG 0.441610 2.3:-17449866 None:intergenic
AACTATACCATTACCACTGC+TGG 0.442336 2.3:-17450998 None:intergenic
CCTCGGTTCGTTGGTGCGGA+TGG 0.452228 2.3:+17450289 MS.gene88365:CDS
AGATTCAGTGCAGGAAGGCT+TGG 0.454274 2.3:+17450939 MS.gene88365:CDS
AAAGCCAGGCGTGGCAATGC+CGG 0.457703 2.3:+17450837 MS.gene88365:CDS
TTGGTCTCCCTTGCGGCCTA+AGG 0.460474 2.3:-17450399 None:intergenic
GGAGACCAAGGGATTATACT+TGG 0.461637 2.3:+17450413 MS.gene88365:CDS
ATGACCGGCATTGCCACGCC+TGG 0.467891 2.3:-17450841 None:intergenic
ATGGATTCTACTGTCCTCCT+TGG 0.475359 2.3:-17450689 None:intergenic
ATCTTGAAGGGCACTGAGTA+GGG 0.476219 2.3:-17449902 None:intergenic
GTGGCAATGCCGGTCATTGG+AGG 0.478744 2.3:+17450847 MS.gene88365:CDS
TTATACTTGGATTCAAGCAT+TGG 0.481860 2.3:+17450426 MS.gene88365:CDS
TGAGCAAAACAATCATCATC+AGG 0.483129 2.3:-17450724 None:intergenic
TTTCAAAATCCGGCAAAGCC+AGG 0.488564 2.3:+17450823 MS.gene88365:CDS
GGTTAGCTGGTGATCTTGAA+GGG 0.489453 2.3:-17449914 None:intergenic
TGGTCGCGGATCTGCATGCT+TGG 0.491252 2.3:+17450264 MS.gene88365:CDS
CTACTGTCCTCCTTGGTGAC+AGG 0.494181 2.3:-17450682 None:intergenic
GGTGGTGCCAGCAGTGGTAA+TGG 0.506919 2.3:+17450991 MS.gene88365:CDS
GGAGATTGAATATGGTATGA+TGG 0.508182 2.3:+17450960 MS.gene88365:CDS
TGCTTGGACCCTCGGTTCGT+TGG 0.509275 2.3:+17450280 MS.gene88365:CDS
TGGCAATGCCGGTCATTGGA+GGG 0.520893 2.3:+17450848 MS.gene88365:CDS
GATCTTGAAGGGCACTGAGT+AGG 0.531784 2.3:-17449903 None:intergenic
GGACCCTCGGTTCGTTGGTG+CGG 0.532291 2.3:+17450285 MS.gene88365:CDS
TTGTCTTCCCCTCCAATGAC+CGG 0.533192 2.3:-17450856 None:intergenic
CCTCGGATTGCCACGTAGAG+AGG 0.534905 2.3:-17450570 None:intergenic
CAAGACAATCTGAAGAAACA+AGG 0.537212 2.3:-17450894 None:intergenic
ACGTAGAGAGGTGACCTTCA+GGG 0.537243 2.3:-17450558 None:intergenic
TTTATCGGCCTTAGGCCGCA+AGG 0.538998 2.3:+17450391 MS.gene88365:CDS
GGTTTATCGTCCAAAGTTGA+AGG 0.540641 2.3:+17450772 MS.gene88365:CDS
TGAATCCAAGTATAATCCCT+TGG 0.542313 2.3:-17450418 None:intergenic
CGTCATAAGAGAGCTTCAAA+TGG 0.545184 2.3:-17450519 None:intergenic
AGTGCTCATTCCTCCTTCCA+TGG 0.545876 2.3:-17450327 None:intergenic
ATCTGAAGAAACAAGGGATG+TGG 0.547311 2.3:-17450887 None:intergenic
TGCACGGGTGGTGCCAGCAG+TGG 0.547740 2.3:+17450985 MS.gene88365:CDS
TTCTGCTAAAGATTCAGTGC+AGG 0.549391 2.3:+17450930 MS.gene88365:CDS
GGCAATGCCGGTCATTGGAG+GGG 0.549475 2.3:+17450849 MS.gene88365:CDS
GGTCGTAAACCAAATTGTAA+TGG 0.554034 2.3:+17450244 MS.gene88365:intron
TCGTCATCCCAAATTGATGA+TGG 0.560527 2.3:-17450490 None:intergenic
AAAAGTTGTGTGAATCAAAG+AGG 0.574407 2.3:-17450453 None:intergenic
CATTTGAAGCTCTCTTATGA+CGG 0.574479 2.3:+17450520 MS.gene88365:CDS
TTAGGCCGCAAGGGAGACCA+AGG 0.575605 2.3:+17450401 MS.gene88365:CDS
GAAGCTCTCTTATGACGGAA+AGG 0.577165 2.3:+17450525 MS.gene88365:CDS
ATCGAATGAGAACGGTGTCA+TGG 0.591031 2.3:+17450618 MS.gene88365:CDS
AAACCAAATTGTAATGGTCG+CGG 0.592477 2.3:+17450250 MS.gene88365:CDS
GAGGAATGAGCACTTCAGCT+TGG 0.594491 2.3:+17450336 MS.gene88365:CDS
TAATCCCTTGGTCTCCCTTG+CGG 0.596610 2.3:-17450406 None:intergenic
AAAACAACGGCTCTTACGGT+TGG 0.597533 2.3:-17449862 None:intergenic
TTATCGGCCTTAGGCCGCAA+GGG 0.605783 2.3:+17450392 MS.gene88365:CDS
GCTAAAGATTCAGTGCAGGA+AGG 0.607245 2.3:+17450934 MS.gene88365:CDS
CCTCTCTACGTGGCAATCCG+AGG 0.608838 2.3:+17450570 MS.gene88365:CDS
CAATGTGGTGCCTGTCACCA+AGG 0.622527 2.3:+17450672 MS.gene88365:CDS
GGTATGATGGATTGCACGGG+TGG 0.622663 2.3:+17450973 MS.gene88365:CDS
ATACTTGGATTCAAGCATTG+GGG 0.623520 2.3:+17450428 MS.gene88365:CDS
CATCCGCACCAACGAACCGA+GGG 0.629982 2.3:-17450288 None:intergenic
AAGGATCTCGTAATCCCTGA+AGG 0.634498 2.3:+17450544 MS.gene88365:CDS
CCATCCGCACCAACGAACCG+AGG 0.635702 2.3:-17450289 None:intergenic
ATCCCAAATTGATGATGGTG+TGG 0.638854 2.3:-17450485 None:intergenic
AAGACAATCTGAAGAAACAA+GGG 0.640149 2.3:-17450893 None:intergenic
AAATCCGGCAAAGCCAGGCG+TGG 0.649193 2.3:+17450828 MS.gene88365:CDS
GAGAGAACATCGAATGAGAA+CGG 0.650582 2.3:+17450610 MS.gene88365:CDS
TACTTGGATTCAAGCATTGG+GGG 0.654990 2.3:+17450429 MS.gene88365:CDS
ATATGGTATGATGGATTGCA+CGG 0.657387 2.3:+17450969 MS.gene88365:CDS
CTGAAGGTCACCTCTCTACG+TGG 0.671125 2.3:+17450560 MS.gene88365:CDS
TCAGTTTCTTGAGAAAACAA+CGG 0.681172 2.3:-17449875 None:intergenic
TATGGTATGATGGATTGCAC+GGG 0.687913 2.3:+17450970 MS.gene88365:CDS
TAGGCCGCAAGGGAGACCAA+GGG 0.706685 2.3:+17450402 MS.gene88365:CDS
TGCTGAAATATCTGTCAATG+TGG 0.712131 2.3:+17450657 MS.gene88365:CDS
TGTGGTGCCTGTCACCAAGG+AGG 0.732407 2.3:+17450675 MS.gene88365:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCGTATTTTATGATAA+TGG + chr2.3:17450051-17450070 MS.gene88365:intron 15.0%
!! AACAAGTGTTAATTATATAG+TGG + chr2.3:17450210-17450229 MS.gene88365:intron 20.0%
!! GATTATTTATGTTCAATACT+TGG + chr2.3:17450001-17450020 MS.gene88365:intron 20.0%
AAAAGTTGTGTGAATCAAAG+AGG - chr2.3:17450456-17450475 None:intergenic 30.0%
AAGACAATCTGAAGAAACAA+GGG - chr2.3:17450896-17450915 None:intergenic 30.0%
CATCAGGAATCTGATAATTA+TGG - chr2.3:17450711-17450730 None:intergenic 30.0%
TATACTTGGATTCAAGCATT+GGG + chr2.3:17450427-17450446 MS.gene88365:CDS 30.0%
TCAGTTTCTTGAGAAAACAA+CGG - chr2.3:17449878-17449897 None:intergenic 30.0%
TTATACTTGGATTCAAGCAT+TGG + chr2.3:17450426-17450445 MS.gene88365:CDS 30.0%
! AGATAGCAAACTTTGTCTTT+TGG - chr2.3:17449939-17449958 None:intergenic 30.0%
! CAAATCAATGCTCGTTTTAT+CGG + chr2.3:17450376-17450395 MS.gene88365:CDS 30.0%
! GATAGCAAACTTTGTCTTTT+GGG - chr2.3:17449938-17449957 None:intergenic 30.0%
!! TAAAACGAGCATTGATTTGA+AGG - chr2.3:17450375-17450394 None:intergenic 30.0%
!! TGATGATTGTTTTGCTCATT+TGG + chr2.3:17450729-17450748 MS.gene88365:CDS 30.0%
AAAACAATGTGATCGCAATC+GGG - chr2.3:17450151-17450170 None:intergenic 35.0%
AAACCAAATTGTAATGGTCG+CGG + chr2.3:17450250-17450269 MS.gene88365:CDS 35.0%
ACAGATATTTCAGCAACTTC+TGG - chr2.3:17450652-17450671 None:intergenic 35.0%
CAAAACAATGTGATCGCAAT+CGG - chr2.3:17450152-17450171 None:intergenic 35.0%
CAAGACAATCTGAAGAAACA+AGG - chr2.3:17450897-17450916 None:intergenic 35.0%
CAGATATTTCAGCAACTTCT+GGG - chr2.3:17450651-17450670 None:intergenic 35.0%
CTTTGTGATCCTTGATATTG+CGG + chr2.3:17450095-17450114 MS.gene88365:intron 35.0%
GATGTGCAGTTCAAATTCTA+TGG + chr2.3:17450751-17450770 MS.gene88365:CDS 35.0%
GGAGATTGAATATGGTATGA+TGG + chr2.3:17450960-17450979 MS.gene88365:CDS 35.0%
GGTCGTAAACCAAATTGTAA+TGG + chr2.3:17450244-17450263 MS.gene88365:intron 35.0%
TGAATCCAAGTATAATCCCT+TGG - chr2.3:17450421-17450440 None:intergenic 35.0%
TGAGCAAAACAATCATCATC+AGG - chr2.3:17450727-17450746 None:intergenic 35.0%
TGCTGAAATATCTGTCAATG+TGG + chr2.3:17450657-17450676 MS.gene88365:CDS 35.0%
! ATACTTGGATTCAAGCATTG+GGG + chr2.3:17450428-17450447 MS.gene88365:CDS 35.0%
! CATTTGAAGCTCTCTTATGA+CGG + chr2.3:17450520-17450539 MS.gene88365:CDS 35.0%
! TCAGCCAGATTTTCAAAATC+CGG + chr2.3:17450813-17450832 MS.gene88365:CDS 35.0%
! TTGTTTTCTACTTCCATGGA+AGG + chr2.3:17450314-17450333 MS.gene88365:CDS 35.0%
!! ATATGGTATGATGGATTGCA+CGG + chr2.3:17450969-17450988 MS.gene88365:CDS 35.0%
!! TATATAGTGGATATGAGAGC+AGG + chr2.3:17450223-17450242 MS.gene88365:intron 35.0%
!! TATGATAATGGTCGCAGTAA+GGG + chr2.3:17450063-17450082 MS.gene88365:intron 35.0%
!! TTATGATAATGGTCGCAGTA+AGG + chr2.3:17450062-17450081 MS.gene88365:intron 35.0%
!! TTTGCCGGATTTTGAAAATC+TGG - chr2.3:17450820-17450839 None:intergenic 35.0%
!!! GACTCTAAGTTGATTTTCCT+CGG - chr2.3:17450590-17450609 None:intergenic 35.0%
AAACAATGTGATCGCAATCG+GGG - chr2.3:17450150-17450169 None:intergenic 40.0%
AACTATACCATTACCACTGC+TGG - chr2.3:17451001-17451020 None:intergenic 40.0%
AAGCCACACCATCATCAATT+TGG + chr2.3:17450482-17450501 MS.gene88365:CDS 40.0%
AGCCACACCATCATCAATTT+GGG + chr2.3:17450483-17450502 MS.gene88365:CDS 40.0%
ATCTGAAGAAACAAGGGATG+TGG - chr2.3:17450890-17450909 None:intergenic 40.0%
CGTCATAAGAGAGCTTCAAA+TGG - chr2.3:17450522-17450541 None:intergenic 40.0%
GAAGGCTTGGAGATTGAATA+TGG + chr2.3:17450952-17450971 MS.gene88365:CDS 40.0%
GAGAGAACATCGAATGAGAA+CGG + chr2.3:17450610-17450629 MS.gene88365:CDS 40.0%
GGTTTATCGTCCAAAGTTGA+AGG + chr2.3:17450772-17450791 MS.gene88365:CDS 40.0%
TCATGGTCAAATGTGACTGA+TGG + chr2.3:17450122-17450141 MS.gene88365:intron 40.0%
TCCAAAGTTGAAGGAGTTCT+TGG + chr2.3:17450781-17450800 MS.gene88365:CDS 40.0%
TCCAAGAACTCCTTCAACTT+TGG - chr2.3:17450785-17450804 None:intergenic 40.0%
TCGTCATCCCAAATTGATGA+TGG - chr2.3:17450493-17450512 None:intergenic 40.0%
TGAGAAAACAACGGCTCTTA+CGG - chr2.3:17449869-17449888 None:intergenic 40.0%
TTCTGCTAAAGATTCAGTGC+AGG + chr2.3:17450930-17450949 MS.gene88365:CDS 40.0%
! GGCATTGTTTTCTACTTCCA+TGG + chr2.3:17450310-17450329 MS.gene88365:CDS 40.0%
! TTTTCTACTTCCATGGAAGG+AGG + chr2.3:17450317-17450336 MS.gene88365:CDS 40.0%
!! ATCCCAAATTGATGATGGTG+TGG - chr2.3:17450488-17450507 None:intergenic 40.0%
!! TACTTGGATTCAAGCATTGG+GGG + chr2.3:17450429-17450448 MS.gene88365:CDS 40.0%
!! TATGGTATGATGGATTGCAC+GGG + chr2.3:17450970-17450989 MS.gene88365:CDS 40.0%
!!! ACTTTGTCTTTTGGGTTAGC+TGG - chr2.3:17449930-17449949 None:intergenic 40.0%
AAAACAACGGCTCTTACGGT+TGG - chr2.3:17449865-17449884 None:intergenic 45.0%
AAGGATCTCGTAATCCCTGA+AGG + chr2.3:17450544-17450563 MS.gene88365:CDS 45.0%
ATGGATTCTACTGTCCTCCT+TGG - chr2.3:17450692-17450711 None:intergenic 45.0%
CATGACTCTCCGCAATATCA+AGG - chr2.3:17450107-17450126 None:intergenic 45.0%
CTTGATATTGCGGAGAGTCA+TGG + chr2.3:17450105-17450124 MS.gene88365:intron 45.0%
GATCCGCGACCATTACAATT+TGG - chr2.3:17450256-17450275 None:intergenic 45.0%
GCTAAAGATTCAGTGCAGGA+AGG + chr2.3:17450934-17450953 MS.gene88365:CDS 45.0%
GGAGACCAAGGGATTATACT+TGG + chr2.3:17450413-17450432 MS.gene88365:CDS 45.0%
TTTCAAAATCCGGCAAAGCC+AGG + chr2.3:17450823-17450842 MS.gene88365:CDS 45.0%
! ATCGAATGAGAACGGTGTCA+TGG + chr2.3:17450618-17450637 MS.gene88365:CDS 45.0%
! ATGCTCGTTTTATCGGCCTT+AGG + chr2.3:17450383-17450402 MS.gene88365:CDS 45.0%
! GAAGCTCTCTTATGACGGAA+AGG + chr2.3:17450525-17450544 MS.gene88365:CDS 45.0%
! GGTTAGCTGGTGATCTTGAA+GGG - chr2.3:17449917-17449936 None:intergenic 45.0%
! TTGCACTGAGTTTTGCACAC+AGG - chr2.3:17449975-17449994 None:intergenic 45.0%
!! ATCTTGAAGGGCACTGAGTA+GGG - chr2.3:17449905-17449924 None:intergenic 45.0%
ACGTAGAGAGGTGACCTTCA+GGG - chr2.3:17450561-17450580 None:intergenic 50.0%
AGATTCAGTGCAGGAAGGCT+TGG + chr2.3:17450939-17450958 MS.gene88365:CDS 50.0%
AGTGCTCATTCCTCCTTCCA+TGG - chr2.3:17450330-17450349 None:intergenic 50.0%
GAGGAATGAGCACTTCAGCT+TGG + chr2.3:17450336-17450355 MS.gene88365:CDS 50.0%
TAATCCCTTGGTCTCCCTTG+CGG - chr2.3:17450409-17450428 None:intergenic 50.0%
TTGTCTTCCCCTCCAATGAC+CGG - chr2.3:17450859-17450878 None:intergenic 50.0%
!! GATCTTGAAGGGCACTGAGT+AGG - chr2.3:17449906-17449925 None:intergenic 50.0%
!! GGGTTAGCTGGTGATCTTGA+AGG - chr2.3:17449918-17449937 None:intergenic 50.0%
CAATGTGGTGCCTGTCACCA+AGG + chr2.3:17450672-17450691 MS.gene88365:CDS 55.0%
CACGTAGAGAGGTGACCTTC+AGG - chr2.3:17450562-17450581 None:intergenic 55.0%
CTGAAGGTCACCTCTCTACG+TGG + chr2.3:17450560-17450579 MS.gene88365:CDS 55.0%
GATCTGCATGCTTGGACCCT+CGG + chr2.3:17450272-17450291 MS.gene88365:CDS 55.0%
TGGCAATGCCGGTCATTGGA+GGG + chr2.3:17450848-17450867 MS.gene88365:CDS 55.0%
TTATCGGCCTTAGGCCGCAA+GGG + chr2.3:17450392-17450411 MS.gene88365:CDS 55.0%
TTTATCGGCCTTAGGCCGCA+AGG + chr2.3:17450391-17450410 MS.gene88365:CDS 55.0%
! CTACTGTCCTCCTTGGTGAC+AGG - chr2.3:17450685-17450704 None:intergenic 55.0%
!! GGTATGATGGATTGCACGGG+TGG + chr2.3:17450973-17450992 MS.gene88365:CDS 55.0%
AAAGCCAGGCGTGGCAATGC+CGG + chr2.3:17450837-17450856 MS.gene88365:CDS 60.0%
AAATCCGGCAAAGCCAGGCG+TGG + chr2.3:17450828-17450847 MS.gene88365:CDS 60.0%
CATCCGCACCAACGAACCGA+GGG - chr2.3:17450291-17450310 None:intergenic 60.0%
CCTCGGATTGCCACGTAGAG+AGG - chr2.3:17450573-17450592 None:intergenic 60.0%
CCTCTCTACGTGGCAATCCG+AGG + chr2.3:17450570-17450589 MS.gene88365:CDS 60.0%
GGCAATGCCGGTCATTGGAG+GGG + chr2.3:17450849-17450868 MS.gene88365:CDS 60.0%
GTGGCAATGCCGGTCATTGG+AGG + chr2.3:17450847-17450866 MS.gene88365:CDS 60.0%
TAGGCCGCAAGGGAGACCAA+GGG + chr2.3:17450402-17450421 MS.gene88365:CDS 60.0%
TGGTCGCGGATCTGCATGCT+TGG + chr2.3:17450264-17450283 MS.gene88365:CDS 60.0%
TGTGGTGCCTGTCACCAAGG+AGG + chr2.3:17450675-17450694 MS.gene88365:CDS 60.0%
TTAGGCCGCAAGGGAGACCA+AGG + chr2.3:17450401-17450420 MS.gene88365:CDS 60.0%
TTGGTCTCCCTTGCGGCCTA+AGG - chr2.3:17450402-17450421 None:intergenic 60.0%
! GGTGGTGCCAGCAGTGGTAA+TGG + chr2.3:17450991-17451010 MS.gene88365:CDS 60.0%
! TGCTTGGACCCTCGGTTCGT+TGG + chr2.3:17450280-17450299 MS.gene88365:CDS 60.0%
!! ATTGCCACGCCTGGCTTTGC+CGG - chr2.3:17450835-17450854 None:intergenic 60.0%
ATGACCGGCATTGCCACGCC+TGG - chr2.3:17450844-17450863 None:intergenic 65.0%
CCATCCGCACCAACGAACCG+AGG - chr2.3:17450292-17450311 None:intergenic 65.0%
GGCGTGGCAATGCCGGTCAT+TGG + chr2.3:17450844-17450863 MS.gene88365:CDS 65.0%
! CCTCGGTTCGTTGGTGCGGA+TGG + chr2.3:17450289-17450308 MS.gene88365:CDS 65.0%
! GGACCCTCGGTTCGTTGGTG+CGG + chr2.3:17450285-17450304 MS.gene88365:CDS 65.0%
! TGCACGGGTGGTGCCAGCAG+TGG + chr2.3:17450985-17451004 MS.gene88365:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 17449759 17451032 17449759 ID=MS.gene88365
chr2.3 mRNA 17449759 17451032 17449759 ID=MS.gene88365.t1;Parent=MS.gene88365
chr2.3 exon 17449759 17449996 17449759 ID=MS.gene88365.t1.exon1;Parent=MS.gene88365.t1
chr2.3 CDS 17449759 17449996 17449759 ID=cds.MS.gene88365.t1;Parent=MS.gene88365.t1
chr2.3 exon 17450245 17451032 17450245 ID=MS.gene88365.t1.exon2;Parent=MS.gene88365.t1
chr2.3 CDS 17450245 17451032 17450245 ID=cds.MS.gene88365.t1;Parent=MS.gene88365.t1
Gene Sequence

>MS.gene88365

ATGGATTTCTCAAGCAACAACAAATGCTTAATGTTTGTTCTGTGTTTATTTGTTTTTGTATCTTCATGTGTGATGTGTATTAATGTTGATACTCAAACATGTACCAACCGTAAGAGCCGTTGTTTTCTCAAGAAACTGAGTTGCCCTACTCAGTGCCCTTCAAGATCACCAGCTAACCCAAAAGACAAAGTTTGCTATCTTGATTGTGATTCTCCTGTGTGCAAAACTCAGTGCAAAAGTAAGATTATTTATGTTCAATACTTGGCACATTTGCATATAAATTAGTTGTTTATTTTTCGTATTTTATGATAATGGTCGCAGTAAGGGTTGCAGTCGCTTTGTGATCCTTGATATTGCGGAGAGTCATGGTCAAATGTGACTGATGGAACCCCGATTGCGATCACATTGTTTTGAGATTCTATTTTTCTTTTGTTTATTTATAATGCAATAGAACAAGTGTTAATTATATAGTGGATATGAGAGCAGGTCGTAAACCAAATTGTAATGGTCGCGGATCTGCATGCTTGGACCCTCGGTTCGTTGGTGCGGATGGCATTGTTTTCTACTTCCATGGAAGGAGGAATGAGCACTTCAGCTTGGTATCTGACGTGAACCTTCAAATCAATGCTCGTTTTATCGGCCTTAGGCCGCAAGGGAGACCAAGGGATTATACTTGGATTCAAGCATTGGGGGTCCTCTTTGATTCACACAACTTTTCTATTGAAGCCACACCATCATCAATTTGGGATGACGAAGTTGACCATTTGAAGCTCTCTTATGACGGAAAGGATCTCGTAATCCCTGAAGGTCACCTCTCTACGTGGCAATCCGAGGAAAATCAACTTAGAGTCGAGAGAACATCGAATGAGAACGGTGTCATGGTTACAATCCCAGAAGTTGCTGAAATATCTGTCAATGTGGTGCCTGTCACCAAGGAGGACAGTAGAATCCATAATTATCAGATTCCTGATGATGATTGTTTTGCTCATTTGGATGTGCAGTTCAAATTCTATGGTTTATCGTCCAAAGTTGAAGGAGTTCTTGGAAGAACTTATCAGCCAGATTTTCAAAATCCGGCAAAGCCAGGCGTGGCAATGCCGGTCATTGGAGGGGAAGACAAGTATAGAACCACATCCCTTGTTTCTTCAGATTGTCTTGCTTGTATATTCTCTTCTGCTAAAGATTCAGTGCAGGAAGGCTTGGAGATTGAATATGGTATGATGGATTGCACGGGTGGTGCCAGCAGTGGTAATGGTATAGTTTGCAGAAGATAA
Protein sequence

>MS.gene88365.t1

MDFSSNNKCLMFVLCLFVFVSSCVMCINVDTQTCTNRKSRCFLKKLSCPTQCPSRSPANPKDKVCYLDCDSPVCKTQCKSRKPNCNGRGSACLDPRFVGADGIVFYFHGRRNEHFSLVSDVNLQINARFIGLRPQGRPRDYTWIQALGVLFDSHNFSIEATPSSIWDDEVDHLKLSYDGKDLVIPEGHLSTWQSEENQLRVERTSNENGVMVTIPEVAEISVNVVPVTKEDSRIHNYQIPDDDCFAHLDVQFKFYGLSSKVEGVLGRTYQPDFQNPAKPGVAMPVIGGEDKYRTTSLVSSDCLACIFSSAKDSVQEGLEIEYGMMDCTGGASSGNGIVCRR