Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88519.t1 | KEH42831.1 | 98.1 | 312 | 6 | 0 | 1 | 312 | 15 | 326 | 3.60E-170 | 607.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88519.t1 | O82616 | 78.3 | 309 | 67 | 0 | 1 | 309 | 13 | 321 | 1.1e-138 | 494.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88519.t1 | A0A072VMK0 | 98.1 | 312 | 6 | 0 | 1 | 312 | 15 | 326 | 2.6e-170 | 607.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28335 | MS.gene88519 | PPI |
| MS.gene46881 | MS.gene88519 | PPI |
| MS.gene046213 | MS.gene88519 | PPI |
| MS.gene85276 | MS.gene88519 | PPI |
| MS.gene039628 | MS.gene88519 | PPI |
| MS.gene61079 | MS.gene88519 | PPI |
| MS.gene88519 | MS.gene88462 | PPI |
| MS.gene88519 | MS.gene003877 | PPI |
| MS.gene88519 | MS.gene052011 | PPI |
| MS.gene032177 | MS.gene88519 | PPI |
| MS.gene88519 | MS.gene93729 | PPI |
| MS.gene63929 | MS.gene88519 | PPI |
| MS.gene88519 | MS.gene98726 | PPI |
| MS.gene056386 | MS.gene88519 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88519.t1 | MTR_1g076850 | 98.077 | 312 | 6 | 0 | 1 | 312 | 15 | 326 | 0.0 | 629 |
| MS.gene88519.t1 | MTR_2g098950 | 66.667 | 309 | 103 | 0 | 1 | 309 | 21 | 329 | 1.78e-154 | 435 |
| MS.gene88519.t1 | MTR_4g067310 | 66.129 | 310 | 105 | 0 | 1 | 310 | 22 | 331 | 2.42e-151 | 427 |
| MS.gene88519.t1 | MTR_6g089480 | 64.401 | 309 | 108 | 2 | 1 | 307 | 1 | 309 | 2.04e-149 | 422 |
| MS.gene88519.t1 | MTR_1g101950 | 62.987 | 308 | 112 | 2 | 1 | 306 | 30 | 337 | 4.94e-144 | 409 |
| MS.gene88519.t1 | MTR_5g079460 | 66.225 | 302 | 101 | 1 | 1 | 301 | 74 | 375 | 5.95e-140 | 400 |
| MS.gene88519.t1 | MTR_6g089480 | 66.543 | 269 | 88 | 2 | 1 | 267 | 1 | 269 | 2.87e-132 | 377 |
| MS.gene88519.t1 | MTR_6g089480 | 66.543 | 269 | 88 | 2 | 1 | 267 | 1 | 269 | 4.95e-132 | 376 |
| MS.gene88519.t1 | MTR_7g075860 | 58.086 | 303 | 123 | 3 | 1 | 299 | 48 | 350 | 3.61e-124 | 360 |
| MS.gene88519.t1 | MTR_1g057810 | 53.737 | 281 | 127 | 2 | 25 | 303 | 279 | 558 | 4.10e-100 | 305 |
| MS.gene88519.t1 | MTR_1g069490 | 50.163 | 307 | 148 | 4 | 2 | 306 | 95 | 398 | 8.46e-100 | 299 |
| MS.gene88519.t1 | MTR_1g069745 | 50.865 | 289 | 128 | 4 | 20 | 306 | 9 | 285 | 7.72e-99 | 293 |
| MS.gene88519.t1 | MTR_1g105150 | 50.178 | 281 | 123 | 3 | 25 | 303 | 279 | 544 | 1.10e-87 | 273 |
| MS.gene88519.t1 | MTR_1g054730 | 45.055 | 273 | 121 | 2 | 34 | 306 | 144 | 387 | 3.82e-74 | 233 |
| MS.gene88519.t1 | MTR_5g044990 | 33.225 | 307 | 180 | 4 | 20 | 304 | 250 | 553 | 9.41e-53 | 182 |
| MS.gene88519.t1 | MTR_4g019165 | 34.906 | 318 | 174 | 4 | 20 | 304 | 133 | 450 | 7.67e-52 | 177 |
| MS.gene88519.t1 | MTR_0046s0180 | 52.427 | 103 | 49 | 0 | 204 | 306 | 7 | 109 | 1.65e-34 | 122 |
| MS.gene88519.t1 | MTR_1g070375 | 25.166 | 302 | 198 | 7 | 26 | 310 | 121 | 411 | 1.11e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88519.t1 | AT4G10260 | 78.317 | 309 | 67 | 0 | 1 | 309 | 13 | 321 | 0.0 | 508 |
| MS.gene88519.t1 | AT3G59480 | 67.752 | 307 | 99 | 0 | 1 | 307 | 17 | 323 | 9.35e-157 | 441 |
| MS.gene88519.t1 | AT1G06020 | 67.203 | 311 | 102 | 0 | 1 | 311 | 17 | 327 | 5.10e-155 | 437 |
| MS.gene88519.t1 | AT1G06030 | 67.752 | 307 | 99 | 0 | 1 | 307 | 18 | 324 | 7.07e-154 | 434 |
| MS.gene88519.t1 | AT2G31390 | 66.775 | 307 | 102 | 0 | 1 | 307 | 16 | 322 | 1.13e-153 | 433 |
| MS.gene88519.t1 | AT1G66430 | 64.706 | 306 | 107 | 1 | 1 | 305 | 72 | 377 | 1.26e-146 | 417 |
| MS.gene88519.t1 | AT5G51830 | 63.694 | 314 | 112 | 2 | 1 | 312 | 30 | 343 | 1.86e-146 | 416 |
| MS.gene88519.t1 | AT5G51830 | 63.694 | 314 | 112 | 2 | 1 | 312 | 30 | 343 | 1.86e-146 | 416 |
| MS.gene88519.t1 | AT3G54090 | 35.938 | 320 | 171 | 5 | 20 | 306 | 143 | 461 | 1.46e-55 | 187 |
| MS.gene88519.t1 | AT1G50390 | 52.071 | 169 | 52 | 1 | 139 | 307 | 1 | 140 | 1.39e-52 | 170 |
| MS.gene88519.t1 | AT1G69200 | 32.639 | 288 | 172 | 3 | 20 | 286 | 246 | 532 | 3.27e-46 | 165 |
| MS.gene88519.t1 | AT1G06730 | 24.917 | 301 | 205 | 6 | 26 | 313 | 132 | 424 | 3.41e-12 | 67.4 |
| MS.gene88519.t1 | AT1G17160 | 23.973 | 292 | 192 | 7 | 25 | 307 | 105 | 375 | 5.05e-11 | 63.5 |
Find 72 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAAGTCTCTCTCAATTT+TGG | 0.146753 | 1.2:+63636626 | None:intergenic |
| GCAAGAGACCCTTCTATATT+TGG | 0.155547 | 1.2:-63636789 | MS.gene88519:CDS |
| ACCTTCTCTAGCAGCTTTCA+TGG | 0.275867 | 1.2:+63637739 | None:intergenic |
| CAAGAGACCCTTCTATATTT+GGG | 0.290405 | 1.2:-63636788 | MS.gene88519:CDS |
| GGCAGCATTGCCACCAAGTT+TGG | 0.291331 | 1.2:+63638675 | None:intergenic |
| AAGCATACCCCAAATATAGA+AGG | 0.366100 | 1.2:+63636780 | None:intergenic |
| AATACAAAGATATTCCATTA+TGG | 0.367235 | 1.2:-63637809 | MS.gene88519:CDS |
| ACAGCACAAGCCACATTGGC+AGG | 0.372362 | 1.2:+63638700 | None:intergenic |
| TCTGCTGAGGCTGCTAGGTC+TGG | 0.380493 | 1.2:-63637668 | MS.gene88519:CDS |
| AAGAAGCTGTTATGTCTCTA+TGG | 0.387207 | 1.2:-63637418 | MS.gene88519:CDS |
| ACATTGGCAGGGGCACCGCC+AGG | 0.390542 | 1.2:+63638712 | None:intergenic |
| CAAATGTCAGGCTTCCTTTG+TGG | 0.390789 | 1.2:-63637694 | MS.gene88519:CDS |
| TAAGACTAATGGATCCATAA+TGG | 0.395043 | 1.2:+63637795 | None:intergenic |
| CAGGTAGGGGATGATGAGTT+TGG | 0.399164 | 1.2:-63638022 | MS.gene88519:CDS |
| TGGTTCTGAAATAAGACTAA+TGG | 0.406052 | 1.2:+63637784 | None:intergenic |
| GGTCTGGAATCAAAAGCATT+TGG | 0.412730 | 1.2:-63637652 | MS.gene88519:CDS |
| ACCATGTAGATCTGCTCATA+TGG | 0.422423 | 1.2:-63637765 | MS.gene88519:CDS |
| AAGCCTGACATTTGGATCAT+AGG | 0.423973 | 1.2:+63637703 | None:intergenic |
| TTTGTGACATTGAGGAAAGA+TGG | 0.427613 | 1.2:-63637914 | MS.gene88519:CDS |
| GCTTGTGCTGTGTCCAAACT+TGG | 0.436119 | 1.2:-63638688 | MS.gene88519:CDS |
| ATAACAGCTTCTTCATTCTC+AGG | 0.444898 | 1.2:+63637428 | None:intergenic |
| CACAAAGGAAGCCTGACATT+TGG | 0.445582 | 1.2:+63637695 | None:intergenic |
| AGTTTAGTTGGCTTTAGAGC+TGG | 0.453062 | 1.2:+63636514 | None:intergenic |
| GTGAAGGCAATTGACACAAC+TGG | 0.456721 | 1.2:-63636852 | MS.gene88519:CDS |
| AGACACATCTGGTGTATCCT+TGG | 0.457720 | 1.2:-63638761 | MS.gene88519:CDS |
| TTCTGAGCCTCTTCAGCAGT+TGG | 0.458744 | 1.2:+63636545 | None:intergenic |
| TCCTTTGTGGCCTTCTGCTG+AGG | 0.474259 | 1.2:-63637681 | MS.gene88519:CDS |
| TTAACATTTGCAAATGCTTG+TGG | 0.485254 | 1.2:-63636608 | MS.gene88519:CDS |
| ATTGAGGAAAGATGGAGAGA+GGG | 0.488808 | 1.2:-63637906 | MS.gene88519:CDS |
| ATTGGCAGGGGCACCGCCAG+GGG | 0.492610 | 1.2:+63638714 | None:intergenic |
| GGCCTTCTGCTGAGGCTGCT+AGG | 0.493211 | 1.2:-63637673 | MS.gene88519:CDS |
| TGCACTTCCAACTGCTGAAG+AGG | 0.495831 | 1.2:-63636552 | MS.gene88519:CDS |
| CATTGGCAGGGGCACCGCCA+GGG | 0.499364 | 1.2:+63638713 | None:intergenic |
| TCTTCAGCAGTTGGAAGTGC+AGG | 0.503583 | 1.2:+63636554 | None:intergenic |
| ATTAAGAACCTTGCCGATGA+AGG | 0.504091 | 1.2:+63638654 | None:intergenic |
| GACCTAGCAGCCTCAGCAGA+AGG | 0.506010 | 1.2:+63637671 | None:intergenic |
| AAGGATACACCAGATGTGTC+TGG | 0.508328 | 1.2:+63638763 | None:intergenic |
| AAGCTGCTTATTATCACTGA+TGG | 0.515902 | 1.2:-63637383 | MS.gene88519:CDS |
| TGTGCTGTGTCCAAACTTGG+TGG | 0.518945 | 1.2:-63638685 | MS.gene88519:CDS |
| CACAGAGGCAAGAACTGCAT+TGG | 0.524471 | 1.2:-63637939 | MS.gene88519:CDS |
| AGCAGTTGGAAGTGCAGGAA+TGG | 0.528605 | 1.2:+63636559 | None:intergenic |
| TGTCCTATGATCCAAATGTC+AGG | 0.532074 | 1.2:-63637706 | MS.gene88519:CDS |
| AATCAAAAGCATTTGGAATG+AGG | 0.534914 | 1.2:-63637645 | MS.gene88519:CDS |
| CATTGAGGAAAGATGGAGAG+AGG | 0.536347 | 1.2:-63637907 | MS.gene88519:CDS |
| TATTATCACTGATGGAGAGA+AGG | 0.541140 | 1.2:-63637375 | MS.gene88519:CDS |
| GGTGGCAATGCTGCCTTCAT+CGG | 0.543040 | 1.2:-63638667 | MS.gene88519:CDS |
| TTCAGTAACATATCAGCACT+AGG | 0.548072 | 1.2:+63637863 | None:intergenic |
| GCAATTGACACAACTGGTGC+TGG | 0.548770 | 1.2:-63636846 | MS.gene88519:CDS |
| TATGCTTTCATCAAAGCCCC+TGG | 0.549304 | 1.2:-63638730 | MS.gene88519:CDS |
| ATTATCACTGATGGAGAGAA+GGG | 0.554637 | 1.2:-63637374 | MS.gene88519:CDS |
| GAATGAGGCTGATTTCATCA+AGG | 0.558047 | 1.2:-63637630 | MS.gene88519:intron |
| TAGGGGATGATGAGTTTGGA+AGG | 0.562525 | 1.2:-63638018 | MS.gene88519:CDS |
| CAGCACAAGCCACATTGGCA+GGG | 0.565146 | 1.2:+63638701 | None:intergenic |
| AGCACAAGCCACATTGGCAG+GGG | 0.566309 | 1.2:+63638702 | None:intergenic |
| GCCTCAGCAGAAGGCCACAA+AGG | 0.575264 | 1.2:+63637680 | None:intergenic |
| GCCATATGAGCAGATCTACA+TGG | 0.575838 | 1.2:+63637764 | None:intergenic |
| TCAGTAACATATCAGCACTA+GGG | 0.589086 | 1.2:+63637864 | None:intergenic |
| AGCATACCCCAAATATAGAA+GGG | 0.593760 | 1.2:+63636781 | None:intergenic |
| GGACACAGCACAAGCCACAT+TGG | 0.596726 | 1.2:+63638696 | None:intergenic |
| GCCATGAAAGCTGCTAGAGA+AGG | 0.601701 | 1.2:-63637740 | MS.gene88519:CDS |
| CAATGCTGCCTTCATCGGCA+AGG | 0.604108 | 1.2:-63638662 | MS.gene88519:intron |
| TGGCGGTGCCCCTGCCAATG+TGG | 0.604697 | 1.2:-63638710 | MS.gene88519:CDS |
| AGCAATGTGTACAACACAGA+AGG | 0.614417 | 1.2:-63636585 | MS.gene88519:CDS |
| GGGTTGTAGATATGTCACTA+AGG | 0.615724 | 1.2:-63637354 | MS.gene88519:intron |
| AAGAGACCCTTCTATATTTG+GGG | 0.620591 | 1.2:-63636787 | MS.gene88519:intron |
| GGTAAGTGGGTTCTCAGTGA+AGG | 0.620599 | 1.2:-63636868 | MS.gene88519:CDS |
| GAAAGAATCTGAATTGAACA+TGG | 0.634038 | 1.2:-63637843 | MS.gene88519:CDS |
| GCAATGTGTACAACACAGAA+GGG | 0.647308 | 1.2:-63636584 | MS.gene88519:CDS |
| TGGTGCACTTCTCAGAGATG+TGG | 0.663280 | 1.2:-63636811 | MS.gene88519:CDS |
| ATGAAAGCTGCTAGAGAAGG+TGG | 0.665141 | 1.2:-63637737 | MS.gene88519:CDS |
| GAAAGCATAAGATTCAGCCA+AGG | 0.678603 | 1.2:+63638744 | None:intergenic |
| GCTTTCATCAAAGCCCCTGG+CGG | 0.681461 | 1.2:-63638727 | MS.gene88519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAATCTTCTTGAA+TGG | + | chr1.2:63638103-63638122 | None:intergenic | 15.0% |
| !! | ATATATACTTAAAATGAATG+CGG | - | chr1.2:63636717-63636736 | MS.gene88519:intron | 15.0% |
| !! | TAAAAATAATCTTCTTGAAT+GGG | + | chr1.2:63638102-63638121 | None:intergenic | 15.0% |
| !! | TTTGTAAAAATAATTCTCAT+TGG | - | chr1.2:63638605-63638624 | MS.gene88519:intron | 15.0% |
| !!! | AATGAGAATTATTTTTACAA+AGG | + | chr1.2:63638606-63638625 | None:intergenic | 15.0% |
| !!! | ATAGAATATTGATAATATGA+GGG | - | chr1.2:63637175-63637194 | MS.gene88519:intron | 15.0% |
| !!! | ATTTTTATCTATTCACAAAT+AGG | - | chr1.2:63638115-63638134 | MS.gene88519:intron | 15.0% |
| !!! | TATAGAATATTGATAATATG+AGG | - | chr1.2:63637174-63637193 | MS.gene88519:intron | 15.0% |
| !!! | TTGAATTTGAAATTTCTTTA+TGG | - | chr1.2:63637703-63637722 | MS.gene88519:CDS | 15.0% |
| !!! | TTTTTATCTATTCACAAATA+GGG | - | chr1.2:63638116-63638135 | MS.gene88519:intron | 15.0% |
| !! | AATACAAAGATATTCCATTA+TGG | - | chr1.2:63637489-63637508 | MS.gene88519:intron | 20.0% |
| !! | ATAAATTTCAATGACCATAT+TGG | + | chr1.2:63636915-63636934 | None:intergenic | 20.0% |
| !! | ATATGGTCATTGAAATTTAT+AGG | - | chr1.2:63636915-63636934 | MS.gene88519:intron | 20.0% |
| !! | GATAAACATGATAGTAAAAT+GGG | + | chr1.2:63636681-63636700 | None:intergenic | 20.0% |
| !! | TTTAAAAGAATCTGTAAAAG+TGG | - | chr1.2:63637776-63637795 | MS.gene88519:CDS | 20.0% |
| !!! | GCATTCATTTTAAGTATATA+TGG | + | chr1.2:63636718-63636737 | None:intergenic | 20.0% |
| !!! | TGAAATTTTTGTTTGCTTTA+TGG | - | chr1.2:63638629-63638648 | MS.gene88519:intron | 20.0% |
| ! | AAACTTACCATTCTCTATAT+AGG | - | chr1.2:63637809-63637828 | MS.gene88519:CDS | 25.0% |
| ! | AAGATAAAATTAAGTCAAGC+TGG | + | chr1.2:63638294-63638313 | None:intergenic | 25.0% |
| ! | AGATAAAATTAAGTCAAGCT+GGG | + | chr1.2:63638293-63638312 | None:intergenic | 25.0% |
| ! | CGATAAACATGATAGTAAAA+TGG | + | chr1.2:63636682-63636701 | None:intergenic | 25.0% |
| ! | TATGGAAGTCTATTAAATGA+TGG | - | chr1.2:63637721-63637740 | MS.gene88519:CDS | 25.0% |
| ! | TCAAACAATATTTCCAAAGA+TGG | + | chr1.2:63638390-63638409 | None:intergenic | 25.0% |
| ! | TTCTGAGTAAATATCCAATA+TGG | - | chr1.2:63636898-63636917 | MS.gene88519:intron | 25.0% |
| !! | AAAGAGCTCTTTTCAAAATA+TGG | + | chr1.2:63637985-63638004 | None:intergenic | 25.0% |
| !! | GTTTGAATGCAGAATTTTAA+AGG | - | chr1.2:63638404-63638423 | MS.gene88519:intron | 25.0% |
| !! | TTTTGTTAACTGATCATTAG+TGG | - | chr1.2:63638036-63638055 | MS.gene88519:intron | 25.0% |
| !!! | AATGCAGAATTTTAAAGGAA+GGG | - | chr1.2:63638409-63638428 | MS.gene88519:intron | 25.0% |
| !!! | CGTATGTCATTTTTTTTGTT+AGG | + | chr1.2:63637255-63637274 | None:intergenic | 25.0% |
| !!! | TTTTCAAAATATGGATTGGA+TGG | + | chr1.2:63637976-63637995 | None:intergenic | 25.0% |
| AAAAATGGAGTGAATACAGA+TGG | - | chr1.2:63637324-63637343 | MS.gene88519:intron | 30.0% | |
| ATACTTAAAATGAATGCGGA+TGG | - | chr1.2:63636721-63636740 | MS.gene88519:intron | 30.0% | |
| ATTTACGTATAGTCTACCAA+CGG | + | chr1.2:63636815-63636834 | None:intergenic | 30.0% | |
| CAAAAAAAATGACATACGAC+AGG | - | chr1.2:63637257-63637276 | MS.gene88519:intron | 30.0% | |
| CTAAACTATTCATCCATCTT+TGG | - | chr1.2:63638374-63638393 | MS.gene88519:intron | 30.0% | |
| CTTTATGGAATTCAACATGA+AGG | - | chr1.2:63638644-63638663 | MS.gene88519:intron | 30.0% | |
| GAAAATAGGATAGCAACTTA+TGG | + | chr1.2:63638233-63638252 | None:intergenic | 30.0% | |
| GAAAGAATCTGAATTGAACA+TGG | - | chr1.2:63637455-63637474 | MS.gene88519:CDS | 30.0% | |
| GAGGATATAACAGAAAACTA+GGG | - | chr1.2:63637743-63637762 | MS.gene88519:CDS | 30.0% | |
| GAGTAGATATCCTGTTTAAT+CGG | + | chr1.2:63637224-63637243 | None:intergenic | 30.0% | |
| GTTTGATGTGGTATTATATG+AGG | - | chr1.2:63636851-63636870 | MS.gene88519:CDS | 30.0% | |
| TACTTAAAATGAATGCGGAT+GGG | - | chr1.2:63636722-63636741 | MS.gene88519:intron | 30.0% | |
| TATGGAGAGCTTATGAAAAT+AGG | + | chr1.2:63638247-63638266 | None:intergenic | 30.0% | |
| TCACTTACCTATATAGAGAA+TGG | + | chr1.2:63637819-63637838 | None:intergenic | 30.0% | |
| TTAACATTTGCAAATGCTTG+TGG | - | chr1.2:63638690-63638709 | MS.gene88519:CDS | 30.0% | |
| TTATCTTAGCAAATGCATCT+CGG | - | chr1.2:63637058-63637077 | MS.gene88519:intron | 30.0% | |
| ! | ACTGTTTTCATAAGCTACTA+TGG | + | chr1.2:63638265-63638284 | None:intergenic | 30.0% |
| ! | GCTCTTTTCAAAATATGGAT+TGG | + | chr1.2:63637980-63637999 | None:intergenic | 30.0% |
| ! | GTTAAAGTCTCTCTCAATTT+TGG | + | chr1.2:63638675-63638694 | None:intergenic | 30.0% |
| ! | TAAGACTAATGGATCCATAA+TGG | + | chr1.2:63637506-63637525 | None:intergenic | 30.0% |
| !! | AATCAAAAGCATTTGGAATG+AGG | - | chr1.2:63637653-63637672 | MS.gene88519:CDS | 30.0% |
| !! | AATTTTAAAGGAAGGGTAAG+TGG | - | chr1.2:63638416-63638435 | MS.gene88519:intron | 30.0% |
| !! | ATTTTAAAGGAAGGGTAAGT+GGG | - | chr1.2:63638417-63638436 | MS.gene88519:intron | 30.0% |
| !! | GAATGCAGAATTTTAAAGGA+AGG | - | chr1.2:63638408-63638427 | MS.gene88519:intron | 30.0% |
| !! | TGGTTCTGAAATAAGACTAA+TGG | + | chr1.2:63637517-63637536 | None:intergenic | 30.0% |
| AAAAATGACATACGACAGGT+AGG | - | chr1.2:63637261-63637280 | MS.gene88519:intron | 35.0% | |
| AAAATGACATACGACAGGTA+GGG | - | chr1.2:63637262-63637281 | MS.gene88519:intron | 35.0% | |
| AAGAAGCTGTTATGTCTCTA+TGG | - | chr1.2:63637880-63637899 | MS.gene88519:CDS | 35.0% | |
| AAGAGACCCTTCTATATTTG+GGG | - | chr1.2:63638511-63638530 | MS.gene88519:intron | 35.0% | |
| AAGCATACCCCAAATATAGA+AGG | + | chr1.2:63638521-63638540 | None:intergenic | 35.0% | |
| AAGCTGCTTATTATCACTGA+TGG | - | chr1.2:63637915-63637934 | MS.gene88519:CDS | 35.0% | |
| AGCATACCCCAAATATAGAA+GGG | + | chr1.2:63638520-63638539 | None:intergenic | 35.0% | |
| ATAACAGCTTCTTCATTCTC+AGG | + | chr1.2:63637873-63637892 | None:intergenic | 35.0% | |
| ATAGCCTCCGTAAATATGAA+TGG | - | chr1.2:63637110-63637129 | MS.gene88519:intron | 35.0% | |
| ATTATCACTGATGGAGAGAA+GGG | - | chr1.2:63637924-63637943 | MS.gene88519:CDS | 35.0% | |
| CAAGAGACCCTTCTATATTT+GGG | - | chr1.2:63638510-63638529 | MS.gene88519:intron | 35.0% | |
| CGGAGGCTATTAAATTGAAA+TGG | + | chr1.2:63637100-63637119 | None:intergenic | 35.0% | |
| CGTCCTTCCATTCATATTTA+CGG | + | chr1.2:63637120-63637139 | None:intergenic | 35.0% | |
| CTATACGTAAATATTCACCG+AGG | - | chr1.2:63636823-63636842 | MS.gene88519:CDS | 35.0% | |
| GACTAGATTGATATGGTCAA+GGG | - | chr1.2:63637197-63637216 | MS.gene88519:intron | 35.0% | |
| GCAGACATCTTGAAGAAAAA+TGG | - | chr1.2:63637309-63637328 | MS.gene88519:intron | 35.0% | |
| GGAAGTCTATTAAATGATGG+AGG | - | chr1.2:63637724-63637743 | MS.gene88519:CDS | 35.0% | |
| GGAGGATATAACAGAAAACT+AGG | - | chr1.2:63637742-63637761 | MS.gene88519:CDS | 35.0% | |
| GTAAATATTCACCGAGGTTA+TGG | - | chr1.2:63636829-63636848 | MS.gene88519:CDS | 35.0% | |
| TATGAGGGACTAGATTGATA+TGG | - | chr1.2:63637190-63637209 | MS.gene88519:intron | 35.0% | |
| TATTATCACTGATGGAGAGA+AGG | - | chr1.2:63637923-63637942 | MS.gene88519:CDS | 35.0% | |
| TCAGTAACATATCAGCACTA+GGG | + | chr1.2:63637437-63637456 | None:intergenic | 35.0% | |
| TGTTCGAAACAGTCTTACAA+GGG | + | chr1.2:63638184-63638203 | None:intergenic | 35.0% | |
| TTCAGTAACATATCAGCACT+AGG | + | chr1.2:63637438-63637457 | None:intergenic | 35.0% | |
| TTGCTAAGATAACACAACTG+AGG | + | chr1.2:63637050-63637069 | None:intergenic | 35.0% | |
| TTGTTCGAAACAGTCTTACA+AGG | + | chr1.2:63638185-63638204 | None:intergenic | 35.0% | |
| TTTACGTATAGTCTACCAAC+GGG | + | chr1.2:63636814-63636833 | None:intergenic | 35.0% | |
| TTTGTGACATTGAGGAAAGA+TGG | - | chr1.2:63637384-63637403 | MS.gene88519:CDS | 35.0% | |
| ! | GTATTTTTCTGTCACTAGAG+TGG | + | chr1.2:63638568-63638587 | None:intergenic | 35.0% |
| AAATGACATACGACAGGTAG+GGG | - | chr1.2:63637263-63637282 | MS.gene88519:intron | 40.0% | |
| AAGCCTGACATTTGGATCAT+AGG | + | chr1.2:63637598-63637617 | None:intergenic | 40.0% | |
| ACCACATCAAACCATAACCT+CGG | + | chr1.2:63636843-63636862 | None:intergenic | 40.0% | |
| ACCATGTAGATCTGCTCATA+TGG | - | chr1.2:63637533-63637552 | MS.gene88519:intron | 40.0% | |
| AGCAATGTGTACAACACAGA+AGG | - | chr1.2:63638713-63638732 | MS.gene88519:CDS | 40.0% | |
| AGTCTTACAAGGGCTTATGT+CGG | + | chr1.2:63638174-63638193 | None:intergenic | 40.0% | |
| ATTAAGAACCTTGCCGATGA+AGG | + | chr1.2:63636647-63636666 | None:intergenic | 40.0% | |
| ATTGAGGAAAGATGGAGAGA+GGG | - | chr1.2:63637392-63637411 | MS.gene88519:CDS | 40.0% | |
| CCTCCGTAAATATGAATGGA+AGG | - | chr1.2:63637114-63637133 | MS.gene88519:intron | 40.0% | |
| CCTTCCATTCATATTTACGG+AGG | + | chr1.2:63637117-63637136 | None:intergenic | 40.0% | |
| GCAAGAGACCCTTCTATATT+TGG | - | chr1.2:63638509-63638528 | MS.gene88519:intron | 40.0% | |
| GCAATGTGTACAACACAGAA+GGG | - | chr1.2:63638714-63638733 | MS.gene88519:CDS | 40.0% | |
| GGACTAGATTGATATGGTCA+AGG | - | chr1.2:63637196-63637215 | MS.gene88519:intron | 40.0% | |
| GGGTTGTAGATATGTCACTA+AGG | - | chr1.2:63637944-63637963 | MS.gene88519:CDS | 40.0% | |
| TAAATCGCAGCTAATGCAAG+CGG | + | chr1.2:63636772-63636791 | None:intergenic | 40.0% | |
| TGTCCTATGATCCAAATGTC+AGG | - | chr1.2:63637592-63637611 | MS.gene88519:intron | 40.0% | |
| TTACGTATAGTCTACCAACG+GGG | + | chr1.2:63636813-63636832 | None:intergenic | 40.0% | |
| ! | GAAAGCATAAGATTCAGCCA+AGG | + | chr1.2:63636557-63636576 | None:intergenic | 40.0% |
| ! | GAATGAGGCTGATTTCATCA+AGG | - | chr1.2:63637668-63637687 | MS.gene88519:CDS | 40.0% |
| ! | GATTTTGTTCCAGACACATC+TGG | - | chr1.2:63636526-63636545 | MS.gene88519:CDS | 40.0% |
| ! | TGGTGTTCTTTTTGACACAG+AGG | - | chr1.2:63637344-63637363 | MS.gene88519:intron | 40.0% |
| !! | GGTCTGGAATCAAAAGCATT+TGG | - | chr1.2:63637646-63637665 | MS.gene88519:CDS | 40.0% |
| !!! | CATTGGCTTTTGTGACATTG+AGG | - | chr1.2:63637376-63637395 | MS.gene88519:CDS | 40.0% |
| AAGGATACACCAGATGTGTC+TGG | + | chr1.2:63636538-63636557 | None:intergenic | 45.0% | |
| ACCGAGGTTATGGTTTGATG+TGG | - | chr1.2:63636839-63636858 | MS.gene88519:CDS | 45.0% | |
| ACCTTCTCTAGCAGCTTTCA+TGG | + | chr1.2:63637562-63637581 | None:intergenic | 45.0% | |
| AGACACATCTGGTGTATCCT+TGG | - | chr1.2:63636537-63636556 | MS.gene88519:CDS | 45.0% | |
| ATGAAAGCTGCTAGAGAAGG+TGG | - | chr1.2:63637561-63637580 | MS.gene88519:intron | 45.0% | |
| CAAATGTCAGGCTTCCTTTG+TGG | - | chr1.2:63637604-63637623 | MS.gene88519:intron | 45.0% | |
| CACAAAGGAAGCCTGACATT+TGG | + | chr1.2:63637606-63637625 | None:intergenic | 45.0% | |
| CATTGAGGAAAGATGGAGAG+AGG | - | chr1.2:63637391-63637410 | MS.gene88519:CDS | 45.0% | |
| GCCATATGAGCAGATCTACA+TGG | + | chr1.2:63637537-63637556 | None:intergenic | 45.0% | |
| GCTTGCATTAGCTGCGATTT+AGG | - | chr1.2:63636771-63636790 | MS.gene88519:intron | 45.0% | |
| GTGAAGGCAATTGACACAAC+TGG | - | chr1.2:63638446-63638465 | MS.gene88519:intron | 45.0% | |
| TAGGGGATGATGAGTTTGGA+AGG | - | chr1.2:63637280-63637299 | MS.gene88519:intron | 45.0% | |
| TATGCTTTCATCAAAGCCCC+TGG | - | chr1.2:63636568-63636587 | MS.gene88519:CDS | 45.0% | |
| !!! | GGTGCTGGTGATTCTTTTGT+TGG | - | chr1.2:63638467-63638486 | MS.gene88519:intron | 45.0% |
| CACAGAGGCAAGAACTGCAT+TGG | - | chr1.2:63637359-63637378 | MS.gene88519:CDS | 50.0% | |
| CAGGTAGGGGATGATGAGTT+TGG | - | chr1.2:63637276-63637295 | MS.gene88519:intron | 50.0% | |
| CTAATCGAGAGTTTCCCCGT+TGG | - | chr1.2:63636796-63636815 | MS.gene88519:CDS | 50.0% | |
| GCAATTGACACAACTGGTGC+TGG | - | chr1.2:63638452-63638471 | MS.gene88519:intron | 50.0% | |
| GCCATGAAAGCTGCTAGAGA+AGG | - | chr1.2:63637558-63637577 | MS.gene88519:intron | 50.0% | |
| GCTTGTGCTGTGTCCAAACT+TGG | - | chr1.2:63636610-63636629 | MS.gene88519:CDS | 50.0% | |
| GGTCAAGGGACCGATTAAAC+AGG | - | chr1.2:63637211-63637230 | MS.gene88519:intron | 50.0% | |
| TGCACTTCCAACTGCTGAAG+AGG | - | chr1.2:63638746-63638765 | MS.gene88519:CDS | 50.0% | |
| TGGTGCACTTCTCAGAGATG+TGG | - | chr1.2:63638487-63638506 | MS.gene88519:intron | 50.0% | |
| TGTGCTGTGTCCAAACTTGG+TGG | - | chr1.2:63636613-63636632 | MS.gene88519:CDS | 50.0% | |
| TTCTGAGCCTCTTCAGCAGT+TGG | + | chr1.2:63638756-63638775 | None:intergenic | 50.0% | |
| ! | AGCAGTTGGAAGTGCAGGAA+TGG | + | chr1.2:63638742-63638761 | None:intergenic | 50.0% |
| ! | GGTAAGTGGGTTCTCAGTGA+AGG | - | chr1.2:63638430-63638449 | MS.gene88519:intron | 50.0% |
| ! | TCTTCAGCAGTTGGAAGTGC+AGG | + | chr1.2:63638747-63638766 | None:intergenic | 50.0% |
| ACAGCACAAGCCACATTGGC+AGG | + | chr1.2:63636601-63636620 | None:intergenic | 55.0% | |
| AGCACAAGCCACATTGGCAG+GGG | + | chr1.2:63636599-63636618 | None:intergenic | 55.0% | |
| CAATGCTGCCTTCATCGGCA+AGG | - | chr1.2:63636636-63636655 | MS.gene88519:intron | 55.0% | |
| CAGCACAAGCCACATTGGCA+GGG | + | chr1.2:63636600-63636619 | None:intergenic | 55.0% | |
| GCTTTCATCAAAGCCCCTGG+CGG | - | chr1.2:63636571-63636590 | MS.gene88519:CDS | 55.0% | |
| GGACACAGCACAAGCCACAT+TGG | + | chr1.2:63636605-63636624 | None:intergenic | 55.0% | |
| GGCAGCATTGCCACCAAGTT+TGG | + | chr1.2:63636626-63636645 | None:intergenic | 55.0% | |
| GGTGGCAATGCTGCCTTCAT+CGG | - | chr1.2:63636631-63636650 | MS.gene88519:CDS | 55.0% | |
| TCCTTTGTGGCCTTCTGCTG+AGG | - | chr1.2:63637617-63637636 | MS.gene88519:intron | 55.0% | |
| TCGCAGCTAATGCAAGCGGA+AGG | + | chr1.2:63636768-63636787 | None:intergenic | 55.0% | |
| GACCTAGCAGCCTCAGCAGA+AGG | + | chr1.2:63637630-63637649 | None:intergenic | 60.0% | |
| GCCTCAGCAGAAGGCCACAA+AGG | + | chr1.2:63637621-63637640 | None:intergenic | 60.0% | |
| TCTGCTGAGGCTGCTAGGTC+TGG | - | chr1.2:63637630-63637649 | MS.gene88519:intron | 60.0% | |
| GGCCTTCTGCTGAGGCTGCT+AGG | - | chr1.2:63637625-63637644 | MS.gene88519:intron | 65.0% | |
| TGGCGGTGCCCCTGCCAATG+TGG | - | chr1.2:63636588-63636607 | MS.gene88519:CDS | 70.0% | |
| !! | ACATTGGCAGGGGCACCGCC+AGG | + | chr1.2:63636589-63636608 | None:intergenic | 70.0% |
| !! | ATTGGCAGGGGCACCGCCAG+GGG | + | chr1.2:63636587-63636606 | None:intergenic | 70.0% |
| !! | CATTGGCAGGGGCACCGCCA+GGG | + | chr1.2:63636588-63636607 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63636517 | 63638803 | 63636517 | ID=MS.gene88519 |
| chr1.2 | mRNA | 63636517 | 63638803 | 63636517 | ID=MS.gene88519.t1;Parent=MS.gene88519 |
| chr1.2 | exon | 63638663 | 63638803 | 63638663 | ID=MS.gene88519.t1.exon1;Parent=MS.gene88519.t1 |
| chr1.2 | CDS | 63638663 | 63638803 | 63638663 | ID=cds.MS.gene88519.t1;Parent=MS.gene88519.t1 |
| chr1.2 | exon | 63637631 | 63638041 | 63637631 | ID=MS.gene88519.t1.exon2;Parent=MS.gene88519.t1 |
| chr1.2 | CDS | 63637631 | 63638041 | 63637631 | ID=cds.MS.gene88519.t1;Parent=MS.gene88519.t1 |
| chr1.2 | exon | 63637355 | 63637489 | 63637355 | ID=MS.gene88519.t1.exon3;Parent=MS.gene88519.t1 |
| chr1.2 | CDS | 63637355 | 63637489 | 63637355 | ID=cds.MS.gene88519.t1;Parent=MS.gene88519.t1 |
| chr1.2 | exon | 63636788 | 63636904 | 63636788 | ID=MS.gene88519.t1.exon4;Parent=MS.gene88519.t1 |
| chr1.2 | CDS | 63636788 | 63636904 | 63636788 | ID=cds.MS.gene88519.t1;Parent=MS.gene88519.t1 |
| chr1.2 | exon | 63636517 | 63636654 | 63636517 | ID=MS.gene88519.t1.exon5;Parent=MS.gene88519.t1 |
| chr1.2 | CDS | 63636517 | 63636654 | 63636517 | ID=cds.MS.gene88519.t1;Parent=MS.gene88519.t1 |
| Gene Sequence |
| Protein sequence |
