Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88594.t1 | XP_003589752.1 | 97.2 | 609 | 16 | 1 | 1 | 609 | 1 | 608 | 0.00E+00 | 1085.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88594.t1 | Q9SIS3 | 67.4 | 617 | 182 | 7 | 1 | 608 | 1 | 607 | 9.9e-205 | 714.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88594.t1 | G7IBG9 | 97.2 | 609 | 16 | 1 | 1 | 609 | 1 | 608 | 0.0e+00 | 1085.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene88594 | 0.80667 | 7.35E-50 | -1.69E-46 |
| MS.gene04915 | MS.gene88594 | 0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene88594 | 0.813212 | 2.87E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene88594 | 0.831873 | 1.30E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene88594 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene050439 | MS.gene88594 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene88594 | 0.800949 | 1.13E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene88594 | 0.805429 | 1.34E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene88594 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene88594 | 0.818236 | 2.18E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene88594 | 0.814795 | 1.28E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene88594 | 0.80767 | 4.51E-50 | -1.69E-46 |
| MS.gene056752 | MS.gene88594 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene057360 | MS.gene88594 | 0.806536 | 7.84E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene88594 | 0.812167 | 4.86E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene88594 | 0.812966 | 3.25E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene88594 | 0.835516 | 1.60E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene88594 | 0.83573 | 1.42E-56 | -1.69E-46 |
| MS.gene059713 | MS.gene88594 | 0.833579 | 4.92E-56 | -1.69E-46 |
| MS.gene059719 | MS.gene88594 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene88594 | 0.826535 | 2.57E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene88594 | 0.812322 | 4.49E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91116 | MS.gene88594 | PPI |
| MS.gene88594 | MS.gene29233 | PPI |
| MS.gene88594 | MS.gene026183 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88594.t1 | MTR_1g038840 | 97.209 | 609 | 16 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1217 |
| MS.gene88594.t1 | MTR_1g038840 | 97.012 | 569 | 16 | 1 | 41 | 609 | 1 | 568 | 0.0 | 1135 |
| MS.gene88594.t1 | MTR_5g093860 | 48.217 | 589 | 278 | 6 | 16 | 603 | 15 | 577 | 0.0 | 525 |
| MS.gene88594.t1 | MTR_6g061690 | 51.252 | 519 | 236 | 7 | 15 | 530 | 15 | 519 | 4.19e-165 | 488 |
| MS.gene88594.t1 | MTR_1g076700 | 46.140 | 544 | 267 | 6 | 15 | 551 | 14 | 538 | 5.27e-150 | 450 |
| MS.gene88594.t1 | MTR_8g041400 | 41.468 | 586 | 306 | 8 | 15 | 596 | 13 | 565 | 1.28e-147 | 438 |
| MS.gene88594.t1 | MTR_3g085440 | 40.754 | 557 | 305 | 10 | 1 | 552 | 1 | 537 | 2.99e-134 | 405 |
| MS.gene88594.t1 | MTR_7g075220 | 42.801 | 507 | 276 | 3 | 12 | 518 | 321 | 813 | 1.75e-119 | 378 |
| MS.gene88594.t1 | MTR_3g085440 | 41.364 | 440 | 247 | 5 | 1 | 437 | 1 | 432 | 3.70e-108 | 332 |
| MS.gene88594.t1 | MTR_8g023220 | 35.795 | 528 | 293 | 9 | 2 | 516 | 1 | 495 | 3.26e-96 | 304 |
| MS.gene88594.t1 | MTR_8g032090 | 36.842 | 95 | 56 | 1 | 254 | 348 | 202 | 292 | 1.30e-11 | 66.2 |
| MS.gene88594.t1 | MTR_4g077600 | 53.846 | 52 | 24 | 0 | 27 | 78 | 187 | 238 | 7.27e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88594.t1 | AT2G01910 | 67.099 | 617 | 184 | 8 | 1 | 608 | 1 | 607 | 0.0 | 796 |
| MS.gene88594.t1 | AT1G14690 | 65.309 | 614 | 191 | 9 | 1 | 606 | 1 | 600 | 0.0 | 794 |
| MS.gene88594.t1 | AT1G14690 | 65.309 | 614 | 191 | 9 | 1 | 606 | 1 | 600 | 0.0 | 794 |
| MS.gene88594.t1 | AT2G01910 | 68.056 | 576 | 166 | 7 | 41 | 608 | 1 | 566 | 0.0 | 755 |
| MS.gene88594.t1 | AT5G55230 | 46.064 | 597 | 292 | 7 | 16 | 606 | 15 | 587 | 1.19e-171 | 501 |
| MS.gene88594.t1 | AT5G55230 | 46.064 | 597 | 292 | 7 | 16 | 606 | 15 | 587 | 1.19e-171 | 501 |
| MS.gene88594.t1 | AT4G26760 | 45.608 | 592 | 285 | 8 | 16 | 603 | 15 | 573 | 1.97e-169 | 494 |
| MS.gene88594.t1 | AT5G55230 | 44.089 | 626 | 291 | 8 | 16 | 606 | 15 | 616 | 7.85e-166 | 487 |
| MS.gene88594.t1 | AT2G38720 | 43.031 | 574 | 292 | 6 | 20 | 593 | 12 | 550 | 2.06e-141 | 422 |
| MS.gene88594.t1 | AT5G51600 | 44.567 | 543 | 286 | 5 | 11 | 550 | 10 | 540 | 2.09e-136 | 414 |
| MS.gene88594.t1 | AT3G60840 | 41.897 | 506 | 280 | 4 | 13 | 517 | 12 | 504 | 2.38e-131 | 400 |
| MS.gene88594.t1 | AT1G27920 | 38.571 | 560 | 311 | 8 | 1 | 534 | 1 | 553 | 4.08e-128 | 388 |
| MS.gene88594.t1 | AT5G62250 | 40.070 | 569 | 304 | 8 | 12 | 567 | 5 | 549 | 1.98e-111 | 345 |
| MS.gene88594.t1 | AT5G62250 | 40.070 | 569 | 304 | 8 | 12 | 567 | 5 | 549 | 1.98e-111 | 345 |
| MS.gene88594.t1 | AT1G27920 | 39.036 | 415 | 243 | 5 | 1 | 412 | 1 | 408 | 3.38e-94 | 296 |
Find 115 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGCAATACCTGGAATTT+TGG | 0.152671 | 1.4:+23443045 | None:intergenic |
| CATTCTCTCTGTGGTGTTCT+TGG | 0.163659 | 1.4:-23444121 | MS.gene88594:CDS |
| TAAGAAGAGGTTGGAGTTAG+AGG | 0.227815 | 1.4:-23443552 | MS.gene88594:CDS |
| GTAGATCTTGCATCTTCTTT+TGG | 0.235244 | 1.4:+23442303 | None:intergenic |
| AATCAAAAGGAAGCCATATA+TGG | 0.244001 | 1.4:-23442275 | MS.gene88594:CDS |
| GGGAATGCTTAGATGTTTAT+AGG | 0.276626 | 1.4:-23444921 | MS.gene88594:CDS |
| GGTACGTTTGGTGGAATTAT+TGG | 0.281304 | 1.4:-23442785 | MS.gene88594:CDS |
| CTCTTCTTCTCTCTGTTGTC+TGG | 0.295010 | 1.4:+23442747 | None:intergenic |
| AAGTGCAAGTAGTGCTTATA+TGG | 0.309402 | 1.4:+23445890 | None:intergenic |
| TCAGGGGCAGTACTTGTATC+AGG | 0.319336 | 1.4:+23443503 | None:intergenic |
| TTGCTTGTGAAGAGGAAAAT+TGG | 0.319572 | 1.4:-23443247 | MS.gene88594:CDS |
| ATTCGAACTTTGGAATTTGA+TGG | 0.329583 | 1.4:-23443826 | MS.gene88594:CDS |
| ACTAGGTTTAGACCCATATA+TGG | 0.358084 | 1.4:+23442262 | None:intergenic |
| CAGCAAATATGGAACGATAT+TGG | 0.368433 | 1.4:-23444988 | MS.gene88594:CDS |
| TCTCTGTGGTGTTCTTGGAT+TGG | 0.377879 | 1.4:-23444116 | MS.gene88594:CDS |
| TCACATCATCATTGACAGTA+TGG | 0.380804 | 1.4:+23444402 | None:intergenic |
| TCGCTAACCTATTCGAACTT+TGG | 0.382162 | 1.4:-23443836 | MS.gene88594:CDS |
| ATTAATGCACTAGCTTTCTC+AGG | 0.388767 | 1.4:+23443485 | None:intergenic |
| TCAAATTCCAAAGTTCGAAT+AGG | 0.392179 | 1.4:+23443829 | None:intergenic |
| TGTTGCAATCTCAGCTTCCT+TGG | 0.397291 | 1.4:+23444843 | None:intergenic |
| ACCTGAGTCCCATGCAAACT+TGG | 0.397911 | 1.4:+23444064 | None:intergenic |
| TGTTGAAAGAGCGCCTCTTT+CGG | 0.406114 | 1.4:+23443731 | None:intergenic |
| TATGACATTGTATCTTCCTT+AGG | 0.409479 | 1.4:+23442011 | None:intergenic |
| TTAAACTTGGGGAGGGGACT+CGG | 0.411081 | 1.4:+23441971 | None:intergenic |
| CTTAGATGTTTATAGGAGAA+AGG | 0.411141 | 1.4:-23444914 | MS.gene88594:CDS |
| GATGTACATCATCTACTGTT+TGG | 0.412398 | 1.4:+23444086 | None:intergenic |
| TACTGCACCTCTCAACTTTG+TGG | 0.419511 | 1.4:-23442039 | MS.gene88594:CDS |
| TTGGGGAGGGGACTCGGGTT+CGG | 0.422995 | 1.4:+23441977 | None:intergenic |
| GGTGTTCTTGGATTGGATTT+CGG | 0.424164 | 1.4:-23444109 | MS.gene88594:CDS |
| CTCAGCTTCCTTGGCTGCAA+GGG | 0.426652 | 1.4:+23444852 | None:intergenic |
| TTCTTCAATTCTTCGACCAA+TGG | 0.430753 | 1.4:+23444503 | None:intergenic |
| GTAACTATAACCAAAATTCC+AGG | 0.440102 | 1.4:-23443055 | MS.gene88594:intron |
| CACACACCGCGCTCCTACTC+TGG | 0.450439 | 1.4:-23442101 | MS.gene88594:CDS |
| TAAACTTGGGGAGGGGACTC+GGG | 0.452043 | 1.4:+23441972 | None:intergenic |
| GATAACACTCGGTACAGTGC+TGG | 0.455300 | 1.4:-23443121 | MS.gene88594:CDS |
| CTTATATGGATACTAGTGAT+AGG | 0.457710 | 1.4:+23445904 | None:intergenic |
| GGACAAAGACCGTATGTTGA+TGG | 0.458837 | 1.4:-23444953 | MS.gene88594:CDS |
| AACAACGGTTATTGTGCAAA+TGG | 0.460331 | 1.4:-23442209 | MS.gene88594:CDS |
| GGAATTTATATAGATTAAGA+TGG | 0.464460 | 1.4:-23444570 | MS.gene88594:intron |
| GCTAGTGCATTAATAGATTC+CGG | 0.471570 | 1.4:-23443476 | MS.gene88594:intron |
| TCGTGGTCTTCAAAAGGAAA+AGG | 0.471921 | 1.4:-23444306 | MS.gene88594:intron |
| ATCAAAAGGAAGCCATATAT+GGG | 0.473492 | 1.4:-23442274 | MS.gene88594:CDS |
| ATGTCATATGTAGGTACGTT+TGG | 0.473501 | 1.4:-23442797 | MS.gene88594:intron |
| GTAGAAGAGAAGTAACAGAT+AGG | 0.475843 | 1.4:-23443286 | MS.gene88594:CDS |
| TCCTACTCTGGTCGTCATAA+CGG | 0.476718 | 1.4:-23442089 | MS.gene88594:CDS |
| TTCTTTGCTCAAAGAACTTG+AGG | 0.479736 | 1.4:-23445869 | MS.gene88594:intron |
| AAGATAAGCGGTGAGATTTG+TGG | 0.481668 | 1.4:-23444428 | MS.gene88594:CDS |
| AGATCTACTCCTAAATCAAA+AGG | 0.486123 | 1.4:-23442288 | MS.gene88594:CDS |
| TCATCAATCCCTTGCAGCCA+AGG | 0.486920 | 1.4:-23444860 | MS.gene88594:CDS |
| GAATCAGAAATCACCGAAAG+AGG | 0.488175 | 1.4:-23443744 | MS.gene88594:CDS |
| AGACCGTATGTTGATGGAGC+TGG | 0.494507 | 1.4:-23444947 | MS.gene88594:CDS |
| AATGGCAACAGCGTCGGCTA+TGG | 0.499985 | 1.4:-23442191 | MS.gene88594:CDS |
| TCCAAGTTTGCATGGGACTC+AGG | 0.500735 | 1.4:-23444065 | MS.gene88594:CDS |
| GCATCTTCGTGGTCTTCAAA+AGG | 0.503443 | 1.4:-23444312 | MS.gene88594:CDS |
| CAACTTTGTGGCTATACCTA+AGG | 0.504876 | 1.4:-23442027 | MS.gene88594:CDS |
| GAATATCAAACGCATCTTCG+TGG | 0.509015 | 1.4:-23444323 | MS.gene88594:CDS |
| CTGTGAATAATGTTGGCCAT+TGG | 0.523179 | 1.4:-23445931 | None:intergenic |
| AACAGCGTCGGCTATGGCAA+TGG | 0.523571 | 1.4:-23442185 | MS.gene88594:CDS |
| ATTGAGTTCCGTCGAGGTGT+AGG | 0.524668 | 1.4:+23442146 | None:intergenic |
| TTTGCAGGCTTCGGCAGAAG+TGG | 0.524852 | 1.4:-23443621 | MS.gene88594:intron |
| TCTCAGCTTCCTTGGCTGCA+AGG | 0.526154 | 1.4:+23444851 | None:intergenic |
| ACTCGTATTTAAGAAGAGGT+TGG | 0.527106 | 1.4:-23443561 | MS.gene88594:CDS |
| TTCAACAGAGATAATAGAGA+AGG | 0.529481 | 1.4:-23443715 | MS.gene88594:intron |
| GTATGTTGATGGAGCTGGAA+AGG | 0.530574 | 1.4:-23444942 | MS.gene88594:CDS |
| AAGAACTCGTATTTAAGAAG+AGG | 0.530652 | 1.4:-23443565 | MS.gene88594:CDS |
| AAGGAAATCTAGAGTACAGA+AGG | 0.531486 | 1.4:-23443969 | MS.gene88594:intron |
| GATGTACATCCAAGTTTGCA+TGG | 0.533457 | 1.4:-23444073 | MS.gene88594:CDS |
| AAGAAGAGAAGAGACGACAG+AGG | 0.537947 | 1.4:-23442732 | MS.gene88594:CDS |
| GCTTGCATCTGTCACACCAT+TGG | 0.541601 | 1.4:-23444519 | MS.gene88594:CDS |
| TATGTTGATGGAGCTGGAAA+GGG | 0.541861 | 1.4:-23444941 | MS.gene88594:CDS |
| GATGTGAGTGTCAGCAGCAC+AGG | 0.543972 | 1.4:-23444386 | MS.gene88594:CDS |
| CATTGAAGCACAAATAGTAA+AGG | 0.552349 | 1.4:-23443327 | MS.gene88594:CDS |
| TCATATGTAGGTACGTTTGG+TGG | 0.552696 | 1.4:-23442794 | MS.gene88594:intron |
| TATAAGCAAAACACTAGCAT+GGG | 0.553893 | 1.4:-23442941 | MS.gene88594:CDS |
| CAACACTAATAGCTGCACTC+GGG | 0.560451 | 1.4:-23444825 | MS.gene88594:CDS |
| ATAACACTCGGTACAGTGCT+GGG | 0.566360 | 1.4:-23443120 | MS.gene88594:CDS |
| TTAATGCACTAGCTTTCTCA+GGG | 0.568025 | 1.4:+23443486 | None:intergenic |
| TTATAAGCAAAACACTAGCA+TGG | 0.571122 | 1.4:-23442942 | MS.gene88594:CDS |
| TTCTCAAGTTAAAAGCAGAA+AGG | 0.571810 | 1.4:-23443988 | MS.gene88594:CDS |
| GTCGGCTATGGCAATGGCAA+TGG | 0.575373 | 1.4:-23442179 | MS.gene88594:CDS |
| TTTGAACTTAAACTTGGGGA+GGG | 0.579865 | 1.4:+23441964 | None:intergenic |
| GGAACATGATATGAGCTCTC+CGG | 0.585065 | 1.4:-23444803 | MS.gene88594:intron |
| GAGTTCCGTCGAGGTGTAGG+AGG | 0.590544 | 1.4:+23442149 | None:intergenic |
| TGTGCAAATGGCAACAGCGT+CGG | 0.597951 | 1.4:-23442197 | MS.gene88594:CDS |
| GCAACACTAATAGCTGCACT+CGG | 0.600020 | 1.4:-23444826 | MS.gene88594:CDS |
| ATGAAAGCGTGCTTTGATGT+TGG | 0.600513 | 1.4:+23444879 | None:intergenic |
| TTTCCAGCTCCATCAACATA+CGG | 0.601579 | 1.4:+23444944 | None:intergenic |
| ATTAGCAATAGCACATTGGA+AGG | 0.604701 | 1.4:-23444025 | MS.gene88594:CDS |
| AATGAGGTGCATTCTCTCTG+TGG | 0.607233 | 1.4:-23444130 | MS.gene88594:CDS |
| TTGAACTTAAACTTGGGGAG+GGG | 0.607474 | 1.4:+23441965 | None:intergenic |
| ACTCGGTACAGTGCTGGGCG+AGG | 0.608408 | 1.4:-23443115 | MS.gene88594:CDS |
| TAACAGATAGGATTGATAAG+TGG | 0.615452 | 1.4:-23443274 | MS.gene88594:CDS |
| ATGTACATCCAAGTTTGCAT+GGG | 0.615491 | 1.4:-23444072 | MS.gene88594:CDS |
| ATTGCAAGACTTTCTGAAGT+CGG | 0.617924 | 1.4:+23444158 | None:intergenic |
| ATGTTAGCTAATAGTTCACA+AGG | 0.618604 | 1.4:+23443347 | None:intergenic |
| CGATATTGGAGAGAGCGAGA+AGG | 0.619852 | 1.4:-23444974 | MS.gene88594:CDS |
| GTGAGTGTCAGCAGCACAGG+TGG | 0.627088 | 1.4:-23444383 | MS.gene88594:CDS |
| TAATATTAGCAATAGCACAT+TGG | 0.628365 | 1.4:-23444029 | MS.gene88594:CDS |
| CTATGCCTCCTACACCTCGA+CGG | 0.629673 | 1.4:-23442154 | MS.gene88594:CDS |
| AGCTTTAGAAAGACAAACAA+CGG | 0.630355 | 1.4:-23442224 | MS.gene88594:CDS |
| AGAAGAGAAGAGACGACAGA+GGG | 0.631005 | 1.4:-23442731 | MS.gene88594:intron |
| AGTCTTGCAATGTGTGAATG+AGG | 0.639710 | 1.4:-23444146 | MS.gene88594:CDS |
| AACACTAATAGCTGCACTCG+GGG | 0.641813 | 1.4:-23444824 | MS.gene88594:CDS |
| AAGTTTGCATGGGACTCAGG+TGG | 0.643834 | 1.4:-23444062 | MS.gene88594:CDS |
| GTGGCTGTTTGCTTGTGAAG+AGG | 0.648627 | 1.4:-23443255 | MS.gene88594:CDS |
| ACTAGTGATAGGACTTCCAA+TGG | 0.653569 | 1.4:+23445915 | None:intergenic |
| TCCGTTATGACGACCAGAGT+AGG | 0.653657 | 1.4:+23442088 | None:intergenic |
| GGGAATTTCAGGATAACACT+CGG | 0.667546 | 1.4:-23443132 | MS.gene88594:intron |
| GGTATAGCCACAAAGTTGAG+AGG | 0.671097 | 1.4:+23442032 | None:intergenic |
| ACTCAGATAGAAAAGATAAG+CGG | 0.674236 | 1.4:-23444440 | MS.gene88594:CDS |
| CCGCTCATTGAGTTCCGTCG+AGG | 0.692714 | 1.4:+23442140 | None:intergenic |
| TTATAGGAGAAAGGTTGACG+AGG | 0.725409 | 1.4:-23444905 | MS.gene88594:CDS |
| TGACGACCAGAGTAGGAGCG+CGG | 0.732672 | 1.4:+23442095 | None:intergenic |
| CCTCGACGGAACTCAATGAG+CGG | 0.735513 | 1.4:-23442140 | MS.gene88594:CDS |
| TAATGCACTAGCTTTCTCAG+GGG | 0.766836 | 1.4:+23443487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTACAATTAAAATATT+AGG | + | chr1.4:23444013-23444032 | None:intergenic | 10.0% |
| !! | AATTGAAAATTTCACTATAT+TGG | - | chr1.4:23442508-23442527 | MS.gene88594:intron | 15.0% |
| !! | ATTAACAATAGTAATTAAGT+TGG | + | chr1.4:23445535-23445554 | None:intergenic | 15.0% |
| !! | ATTATAACAAATAATAAGAC+TGG | + | chr1.4:23443976-23443995 | None:intergenic | 15.0% |
| !!! | TAAAAAATCAATTTTATGCA+TGG | - | chr1.4:23443146-23443165 | MS.gene88594:intron | 15.0% |
| !!! | TTTTATTGTAAATTTTCATG+TGG | - | chr1.4:23442457-23442476 | MS.gene88594:intron | 15.0% |
| !! | AAAAAAGCGAATCAATAATA+TGG | + | chr1.4:23442730-23442749 | None:intergenic | 20.0% |
| !! | AAACATGGAAAATATATGAA+AGG | + | chr1.4:23444239-23444258 | None:intergenic | 20.0% |
| !! | AAATGCTTATAGGAAAATAT+GGG | + | chr1.4:23445204-23445223 | None:intergenic | 20.0% |
| !! | AATTTATTTCCTGTGTAAAT+TGG | - | chr1.4:23445421-23445440 | MS.gene88594:intron | 20.0% |
| !! | ATATAGAAGTAATTATGCAT+TGG | - | chr1.4:23445508-23445527 | MS.gene88594:intron | 20.0% |
| !! | GAAAATTCATGATAAAATGA+TGG | - | chr1.4:23442764-23442783 | MS.gene88594:CDS | 20.0% |
| !! | GAAGTAACAAATAAAGAAAA+AGG | + | chr1.4:23442846-23442865 | None:intergenic | 20.0% |
| !! | GGAATTTATATAGATTAAGA+TGG | - | chr1.4:23443323-23443342 | MS.gene88594:CDS | 20.0% |
| !! | GTAATAAAATATACATAAGC+AGG | + | chr1.4:23445297-23445316 | None:intergenic | 20.0% |
| !! | TTACACAGGAAATAAATTAA+GGG | + | chr1.4:23445419-23445438 | None:intergenic | 20.0% |
| !! | TTGATGTATTAATATACTTG+AGG | - | chr1.4:23443279-23443298 | MS.gene88594:CDS | 20.0% |
| !! | TTTACACAGGAAATAAATTA+AGG | + | chr1.4:23445420-23445439 | None:intergenic | 20.0% |
| !!! | AAATAAATTAAGGGTACAAA+AGG | + | chr1.4:23445410-23445429 | None:intergenic | 20.0% |
| !!! | TACTTCAATTTTTTTACCTT+TGG | - | chr1.4:23442860-23442879 | MS.gene88594:intron | 20.0% |
| !!! | TGTAGGTTATTTTATTGTAA+GGG | - | chr1.4:23442340-23442359 | MS.gene88594:intron | 20.0% |
| !!! | TTGGTTTTGTTAACAAATTT+TGG | - | chr1.4:23442527-23442546 | MS.gene88594:intron | 20.0% |
| ! | AAAGAACAAAGATCAATTTG+AGG | + | chr1.4:23445236-23445255 | None:intergenic | 25.0% |
| ! | AAATCCCATATTAACTGAAT+TGG | + | chr1.4:23442559-23442578 | None:intergenic | 25.0% |
| ! | AATACATCAAAAAGCTTACA+TGG | + | chr1.4:23443269-23443288 | None:intergenic | 25.0% |
| ! | AGTTACCAATTCAGTTAATA+TGG | - | chr1.4:23442551-23442570 | MS.gene88594:intron | 25.0% |
| ! | ATGAAAGGAAAAAATGATGA+TGG | + | chr1.4:23444224-23444243 | None:intergenic | 25.0% |
| ! | CAAATGCTTATAGGAAAATA+TGG | + | chr1.4:23445205-23445224 | None:intergenic | 25.0% |
| ! | CAAGTCATTTATGTATTTAC+CGG | + | chr1.4:23443112-23443131 | None:intergenic | 25.0% |
| ! | GAGATAATTACAAACTTACT+TGG | + | chr1.4:23444686-23444705 | None:intergenic | 25.0% |
| ! | GTTACCAATTCAGTTAATAT+GGG | - | chr1.4:23442552-23442571 | MS.gene88594:intron | 25.0% |
| ! | TAAAATATTAGGCTAAAGAG+AGG | + | chr1.4:23444002-23444021 | None:intergenic | 25.0% |
| ! | TAATATTAGCAATAGCACAT+TGG | - | chr1.4:23443864-23443883 | MS.gene88594:intron | 25.0% |
| ! | TATTGTTAATAATCCACTTC+TGG | - | chr1.4:23445545-23445564 | MS.gene88594:intron | 25.0% |
| ! | TGAAGAAGAAAAAAGAAGAA+AGG | - | chr1.4:23443406-23443425 | MS.gene88594:intron | 25.0% |
| ! | TGTTATAAACTACACTTACT+AGG | + | chr1.4:23445269-23445288 | None:intergenic | 25.0% |
| !! | AAAATCAATTTTATGCATGG+TGG | - | chr1.4:23443149-23443168 | MS.gene88594:intron | 25.0% |
| !! | ATTTTATTGTAAGGGAGAAA+GGG | - | chr1.4:23442348-23442367 | MS.gene88594:intron | 25.0% |
| !! | TATTTTATTGTAAGGGAGAA+AGG | - | chr1.4:23442347-23442366 | MS.gene88594:intron | 25.0% |
| !!! | AAAAATGACTTTTTCAACTC+AGG | + | chr1.4:23442402-23442421 | None:intergenic | 25.0% |
| !!! | AAGACTTGTTTTCTATATGA+TGG | - | chr1.4:23444986-23445005 | MS.gene88594:CDS | 25.0% |
| !!! | AGACTTGTTTTCTATATGAT+GGG | - | chr1.4:23444987-23445006 | MS.gene88594:CDS | 25.0% |
| !!! | CTAAAGCTGTTAGTTTTTTT+TGG | + | chr1.4:23445657-23445676 | None:intergenic | 25.0% |
| !!! | CTGTAGGTTATTTTATTGTA+AGG | - | chr1.4:23442339-23442358 | MS.gene88594:intron | 25.0% |
| !!! | CTTTTTAAAAATGCAGTTGA+AGG | - | chr1.4:23444028-23444047 | MS.gene88594:CDS | 25.0% |
| !!! | GTGTAGAACATTTAATTTGA+TGG | - | chr1.4:23445443-23445462 | MS.gene88594:intron | 25.0% |
| !!! | TGTGACTTTTTCTTACAAAT+AGG | + | chr1.4:23445353-23445372 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTCAGAATGATG+AGG | - | chr1.4:23442095-23442114 | MS.gene88594:CDS | 25.0% |
| !!! | TTTAAAAGAGAAAGCACTTA+TGG | - | chr1.4:23442305-23442324 | MS.gene88594:CDS | 25.0% |
| AAAAATTTCTGTCAGACCAA+AGG | + | chr1.4:23445324-23445343 | None:intergenic | 30.0% | |
| AAAATTTCTGTCAGACCAAA+GGG | + | chr1.4:23445323-23445342 | None:intergenic | 30.0% | |
| AAATGAGATTTGTCAACCAA+AGG | + | chr1.4:23442879-23442898 | None:intergenic | 30.0% | |
| AAATTCACGTTAATGCAACA+GGG | + | chr1.4:23444449-23444468 | None:intergenic | 30.0% | |
| AAGAACTCGTATTTAAGAAG+AGG | - | chr1.4:23444328-23444347 | MS.gene88594:CDS | 30.0% | |
| AATAATAAGACTGGAGCTTA+AGG | + | chr1.4:23443967-23443986 | None:intergenic | 30.0% | |
| AATCAAAAGGAAGCCATATA+TGG | - | chr1.4:23445618-23445637 | MS.gene88594:intron | 30.0% | |
| ACTCAGATAGAAAAGATAAG+CGG | - | chr1.4:23443453-23443472 | MS.gene88594:intron | 30.0% | |
| AGATCTACTCCTAAATCAAA+AGG | - | chr1.4:23445605-23445624 | MS.gene88594:intron | 30.0% | |
| ATAATAAGACTGGAGCTTAA+GGG | + | chr1.4:23443966-23443985 | None:intergenic | 30.0% | |
| ATCAAAAGGAAGCCATATAT+GGG | - | chr1.4:23445619-23445638 | MS.gene88594:intron | 30.0% | |
| ATGTTAGCTAATAGTTCACA+AGG | + | chr1.4:23444549-23444568 | None:intergenic | 30.0% | |
| CATTGAAGCACAAATAGTAA+AGG | - | chr1.4:23444566-23444585 | MS.gene88594:intron | 30.0% | |
| CTTAGATGTTTATAGGAGAA+AGG | - | chr1.4:23442979-23442998 | MS.gene88594:intron | 30.0% | |
| CTTATATGGATACTAGTGAT+AGG | + | chr1.4:23441992-23442011 | None:intergenic | 30.0% | |
| GACAAACAACAAATGCTTAT+AGG | + | chr1.4:23445214-23445233 | None:intergenic | 30.0% | |
| GAGAAGAAACAAAACATCAT+TGG | + | chr1.4:23442259-23442278 | None:intergenic | 30.0% | |
| GTAACTATAACCAAAATTCC+AGG | - | chr1.4:23444838-23444857 | MS.gene88594:CDS | 30.0% | |
| GTGAAAACCAGAAATAATCA+TGG | + | chr1.4:23445030-23445049 | None:intergenic | 30.0% | |
| TAACAGATAGGATTGATAAG+TGG | - | chr1.4:23444619-23444638 | MS.gene88594:intron | 30.0% | |
| TATAAGCAAAACACTAGCAT+GGG | - | chr1.4:23444952-23444971 | MS.gene88594:CDS | 30.0% | |
| TATAGAATGAGTCTCTTGAT+TGG | - | chr1.4:23442670-23442689 | MS.gene88594:intron | 30.0% | |
| TATGACATTGTATCTTCCTT+AGG | + | chr1.4:23445885-23445904 | None:intergenic | 30.0% | |
| TATGCAAAGTCTATCCTATT+TGG | + | chr1.4:23442652-23442671 | None:intergenic | 30.0% | |
| TCAAATTCCAAAGTTCGAAT+AGG | + | chr1.4:23444067-23444086 | None:intergenic | 30.0% | |
| TGATTGTCAATGTCATATGT+AGG | - | chr1.4:23445087-23445106 | MS.gene88594:intron | 30.0% | |
| TGGAACTTTCAACAACAAAT+AGG | + | chr1.4:23444881-23444900 | None:intergenic | 30.0% | |
| TTATAAGCAAAACACTAGCA+TGG | - | chr1.4:23444951-23444970 | MS.gene88594:CDS | 30.0% | |
| TTCAACAGAGATAATAGAGA+AGG | - | chr1.4:23444178-23444197 | MS.gene88594:intron | 30.0% | |
| TTCTCAAGTTAAAAGCAGAA+AGG | - | chr1.4:23443905-23443924 | MS.gene88594:intron | 30.0% | |
| ! | ATATTTTATTACTCCCCCTT+TGG | - | chr1.4:23445305-23445324 | MS.gene88594:intron | 30.0% |
| ! | TTTTATTGTAAGGGAGAAAG+GGG | - | chr1.4:23442349-23442368 | MS.gene88594:intron | 30.0% |
| ! | TTTTCAGAATGATGAGGTTT+TGG | - | chr1.4:23442101-23442120 | MS.gene88594:CDS | 30.0% |
| !! | AGAAAGCACTTATGGTTATA+GGG | - | chr1.4:23442313-23442332 | MS.gene88594:intron | 30.0% |
| !! | AGCTTTAGAAAGACAAACAA+CGG | - | chr1.4:23445669-23445688 | MS.gene88594:intron | 30.0% |
| !! | ATTCGAACTTTGGAATTTGA+TGG | - | chr1.4:23444067-23444086 | MS.gene88594:CDS | 30.0% |
| !! | CAATCTACCTATTTTGAGAA+GGG | - | chr1.4:23443239-23443258 | MS.gene88594:CDS | 30.0% |
| !! | GACTTGTTTTCTATATGATG+GGG | - | chr1.4:23444988-23445007 | MS.gene88594:CDS | 30.0% |
| !! | TCAATCTACCTATTTTGAGA+AGG | - | chr1.4:23443238-23443257 | MS.gene88594:CDS | 30.0% |
| !!! | ATATGGCTTCCTTTTGATTT+AGG | + | chr1.4:23445617-23445636 | None:intergenic | 30.0% |
| !!! | ATGATGTTTTGTTTCTTCTC+AGG | - | chr1.4:23442259-23442278 | MS.gene88594:CDS | 30.0% |
| !!! | CTGTTAGTTTTTTTTGGACT+AGG | + | chr1.4:23445651-23445670 | None:intergenic | 30.0% |
| !!! | GGTCTGACAGAAATTTTTTT+TGG | - | chr1.4:23445326-23445345 | MS.gene88594:intron | 30.0% |
| !!! | TATGGGATTTTAGTTTGACT+TGG | - | chr1.4:23442569-23442588 | MS.gene88594:intron | 30.0% |
| !!! | TTCTGCTTTTAACTTGAGAA+TGG | + | chr1.4:23443905-23443924 | None:intergenic | 30.0% |
| AAAGCACATTTCAGCAAACA+TGG | + | chr1.4:23444254-23444273 | None:intergenic | 35.0% | |
| AAATTTCTGTCAGACCAAAG+GGG | + | chr1.4:23445322-23445341 | None:intergenic | 35.0% | |
| AACAACGGTTATTGTGCAAA+TGG | - | chr1.4:23445684-23445703 | MS.gene88594:intron | 35.0% | |
| AAGTGCAAGTAGTGCTTATA+TGG | + | chr1.4:23442006-23442025 | None:intergenic | 35.0% | |
| AAGTGGTCCATGATTATTTC+TGG | - | chr1.4:23445020-23445039 | MS.gene88594:intron | 35.0% | |
| AATAAATGAACGCTCTTCGA+TGG | - | chr1.4:23443627-23443646 | MS.gene88594:intron | 35.0% | |
| ACTAGGTTTAGACCCATATA+TGG | + | chr1.4:23445634-23445653 | None:intergenic | 35.0% | |
| ACTCGTATTTAAGAAGAGGT+TGG | - | chr1.4:23444332-23444351 | MS.gene88594:CDS | 35.0% | |
| AGAGAACACACTGTCATTAT+AGG | + | chr1.4:23444910-23444929 | None:intergenic | 35.0% | |
| ATAAGATTGTCAACCATTGC+TGG | + | chr1.4:23444935-23444954 | None:intergenic | 35.0% | |
| ATAGGAAAATATGGGCAAAG+AGG | + | chr1.4:23445196-23445215 | None:intergenic | 35.0% | |
| ATGTACATCCAAGTTTGCAT+GGG | - | chr1.4:23443821-23443840 | MS.gene88594:CDS | 35.0% | |
| ATGTCATATGTAGGTACGTT+TGG | - | chr1.4:23445096-23445115 | MS.gene88594:intron | 35.0% | |
| ATTAGCAATAGCACATTGGA+AGG | - | chr1.4:23443868-23443887 | MS.gene88594:intron | 35.0% | |
| CAAAAACAGAAAACCAGAAG+TGG | + | chr1.4:23445561-23445580 | None:intergenic | 35.0% | |
| CAAAACGCGCAAAATTATAG+AGG | + | chr1.4:23443192-23443211 | None:intergenic | 35.0% | |
| CAAATTCACGTTAATGCAAC+AGG | + | chr1.4:23444450-23444469 | None:intergenic | 35.0% | |
| CAGCAAATATGGAACGATAT+TGG | - | chr1.4:23442905-23442924 | MS.gene88594:intron | 35.0% | |
| CATAGTGCACGTCAATTATT+TGG | - | chr1.4:23444717-23444736 | MS.gene88594:intron | 35.0% | |
| GATGTACATCATCTACTGTT+TGG | + | chr1.4:23443810-23443829 | None:intergenic | 35.0% | |
| GCTAGTGCATTAATAGATTC+CGG | - | chr1.4:23444417-23444436 | MS.gene88594:CDS | 35.0% | |
| GGGAATGCTTAGATGTTTAT+AGG | - | chr1.4:23442972-23442991 | MS.gene88594:intron | 35.0% | |
| GTAGAAGAGAAGTAACAGAT+AGG | - | chr1.4:23444607-23444626 | MS.gene88594:intron | 35.0% | |
| TCACATCATCATTGACAGTA+TGG | + | chr1.4:23443494-23443513 | None:intergenic | 35.0% | |
| TCCTATTTGGCAAAAACAAC+AGG | + | chr1.4:23442639-23442658 | None:intergenic | 35.0% | |
| TGTTCTACACCAATTTACAC+AGG | + | chr1.4:23445433-23445452 | None:intergenic | 35.0% | |
| TTCTTCAATTCTTCGACCAA+TGG | + | chr1.4:23443393-23443412 | None:intergenic | 35.0% | |
| TTCTTTGCTCAAAGAACTTG+AGG | - | chr1.4:23442024-23442043 | MS.gene88594:CDS | 35.0% | |
| TTGCTTGTGAAGAGGAAAAT+TGG | - | chr1.4:23444646-23444665 | MS.gene88594:intron | 35.0% | |
| ! | AAGAGAGAAACTCTTTTCTG+AGG | - | chr1.4:23444102-23444121 | MS.gene88594:CDS | 35.0% |
| ! | AAGGAAATCTAGAGTACAGA+AGG | - | chr1.4:23443924-23443943 | MS.gene88594:intron | 35.0% |
| ! | CATTTTGTGTGCAGCAAATA+TGG | - | chr1.4:23442894-23442913 | MS.gene88594:intron | 35.0% |
| ! | GTAGATCTTGCATCTTCTTT+TGG | + | chr1.4:23445593-23445612 | None:intergenic | 35.0% |
| ! | TGGTTTTCCCTTCTCAAAAT+AGG | + | chr1.4:23443249-23443268 | None:intergenic | 35.0% |
| ! | TTTGTGCATTTTTCTGTGCT+TGG | - | chr1.4:23443694-23443713 | MS.gene88594:intron | 35.0% |
| !! | ATTAATGCACTAGCTTTCTC+AGG | + | chr1.4:23444411-23444430 | None:intergenic | 35.0% |
| !! | ATTGCAAGACTTTCTGAAGT+CGG | + | chr1.4:23443738-23443757 | None:intergenic | 35.0% |
| !! | CTTTCTGATCGATTTGTATG+TGG | - | chr1.4:23443302-23443321 | MS.gene88594:CDS | 35.0% |
| !! | GAGAAAGCACTTATGGTTAT+AGG | - | chr1.4:23442312-23442331 | MS.gene88594:intron | 35.0% |
| !! | GTTGATGATGATGAATAGTG+TGG | - | chr1.4:23442169-23442188 | MS.gene88594:CDS | 35.0% |
| !! | TTAATGCACTAGCTTTCTCA+GGG | + | chr1.4:23444410-23444429 | None:intergenic | 35.0% |
| !!! | CTTCGCAGAGTTATTTTTAG+CGG | - | chr1.4:23445053-23445072 | MS.gene88594:intron | 35.0% |
| !!! | GAATCCTCTGTTTTTGATAC+AGG | - | chr1.4:23444513-23444532 | MS.gene88594:CDS | 35.0% |
| !!! | GGTTTTCTGTTTTTGATCTC+AGG | - | chr1.4:23445566-23445585 | MS.gene88594:intron | 35.0% |
| !!! | TCCTGTTGTTTTTGCCAAAT+AGG | - | chr1.4:23442635-23442654 | MS.gene88594:intron | 35.0% |
| AAGATAAGCGGTGAGATTTG+TGG | - | chr1.4:23443465-23443484 | MS.gene88594:intron | 40.0% | |
| AATTTCTGTCAGACCAAAGG+GGG | + | chr1.4:23445321-23445340 | None:intergenic | 40.0% | |
| ACAGAGGATTCGATAGTATC+AGG | + | chr1.4:23444504-23444523 | None:intergenic | 40.0% | |
| ACCCTACTAGAGGTAGTAAA+AGG | - | chr1.4:23445474-23445493 | MS.gene88594:intron | 40.0% | |
| ACTAGTGATAGGACTTCCAA+TGG | + | chr1.4:23441981-23442000 | None:intergenic | 40.0% | |
| AGTCTTGCAATGTGTGAATG+AGG | - | chr1.4:23443747-23443766 | MS.gene88594:CDS | 40.0% | |
| ATCCTGAAATTCCCCATATC+AGG | + | chr1.4:23444755-23444774 | None:intergenic | 40.0% | |
| CAACTTTGTGGCTATACCTA+AGG | - | chr1.4:23445866-23445885 | MS.gene88594:intron | 40.0% | |
| CAAGCCTGTATCAAAAACAG+AGG | + | chr1.4:23444520-23444539 | None:intergenic | 40.0% | |
| CCCTACTAGAGGTAGTAAAA+GGG | - | chr1.4:23445475-23445494 | MS.gene88594:intron | 40.0% | |
| CGCTAAAAATAACTCTGCGA+AGG | + | chr1.4:23445055-23445074 | None:intergenic | 40.0% | |
| CTTGTTCTCTGACCTGATAT+GGG | - | chr1.4:23444740-23444759 | MS.gene88594:intron | 40.0% | |
| GAATATCAAACGCATCTTCG+TGG | - | chr1.4:23443570-23443589 | MS.gene88594:CDS | 40.0% | |
| GAATCAGAAATCACCGAAAG+AGG | - | chr1.4:23444149-23444168 | MS.gene88594:CDS | 40.0% | |
| GATGTACATCCAAGTTTGCA+TGG | - | chr1.4:23443820-23443839 | MS.gene88594:CDS | 40.0% | |
| GCATTTATGACAGCAATACC+TGG | + | chr1.4:23444859-23444878 | None:intergenic | 40.0% | |
| GGGAATTTCAGGATAACACT+CGG | - | chr1.4:23444761-23444780 | MS.gene88594:intron | 40.0% | |
| TAAGAAGAGGTTGGAGTTAG+AGG | - | chr1.4:23444341-23444360 | MS.gene88594:CDS | 40.0% | |
| TAATGCAACAGGGAACATAC+CGG | + | chr1.4:23444439-23444458 | None:intergenic | 40.0% | |
| TATGGTTATAGGGTCTCTGT+AGG | - | chr1.4:23442323-23442342 | MS.gene88594:intron | 40.0% | |
| TCATATGTAGGTACGTTTGG+TGG | - | chr1.4:23445099-23445118 | MS.gene88594:intron | 40.0% | |
| TCGCTAACCTATTCGAACTT+TGG | - | chr1.4:23444057-23444076 | MS.gene88594:CDS | 40.0% | |
| TCGTGGTCTTCAAAAGGAAA+AGG | - | chr1.4:23443587-23443606 | MS.gene88594:CDS | 40.0% | |
| TTATAGGAGAAAGGTTGACG+AGG | - | chr1.4:23442988-23443007 | MS.gene88594:intron | 40.0% | |
| TTGTTCTCTGACCTGATATG+GGG | - | chr1.4:23444741-23444760 | MS.gene88594:intron | 40.0% | |
| TTTCCAGCTCCATCAACATA+CGG | + | chr1.4:23442952-23442971 | None:intergenic | 40.0% | |
| ! | AAATGTGCTTTTGCAGGCTT+CGG | - | chr1.4:23444263-23444282 | MS.gene88594:intron | 40.0% |
| ! | ATGAAAGCGTGCTTTGATGT+TGG | + | chr1.4:23443017-23443036 | None:intergenic | 40.0% |
| ! | CCCTTTTACTACCTCTAGTA+GGG | + | chr1.4:23445478-23445497 | None:intergenic | 40.0% |
| ! | GACAGCAATACCTGGAATTT+TGG | + | chr1.4:23444851-23444870 | None:intergenic | 40.0% |
| ! | GGTACGTTTGGTGGAATTAT+TGG | - | chr1.4:23445108-23445127 | MS.gene88594:intron | 40.0% |
| ! | GGTGTTCTTGGATTGGATTT+CGG | - | chr1.4:23443784-23443803 | MS.gene88594:CDS | 40.0% |
| ! | TATGTTGATGGAGCTGGAAA+GGG | - | chr1.4:23442952-23442971 | MS.gene88594:CDS | 40.0% |
| ! | TCCCTTTTACTACCTCTAGT+AGG | + | chr1.4:23445479-23445498 | None:intergenic | 40.0% |
| ! | TTGCTGAAATGTGCTTTTGC+AGG | - | chr1.4:23444257-23444276 | MS.gene88594:intron | 40.0% |
| ! | TTGTTGTTGAAAGTTCCACG+CGG | - | chr1.4:23444883-23444902 | MS.gene88594:CDS | 40.0% |
| !! | TAATGCACTAGCTTTCTCAG+GGG | + | chr1.4:23444409-23444428 | None:intergenic | 40.0% |
| !!! | CTCTGTTTTTGATACAGGCT+TGG | - | chr1.4:23444518-23444537 | MS.gene88594:CDS | 40.0% |
| !!! | GCTTGGTTTTTTCTTCCAGT+CGG | - | chr1.4:23443711-23443730 | MS.gene88594:intron | 40.0% |
| AACACTAATAGCTGCACTCG+GGG | - | chr1.4:23443069-23443088 | MS.gene88594:CDS | 45.0% | |
| AAGAAGAGAAGAGACGACAG+AGG | - | chr1.4:23445161-23445180 | MS.gene88594:intron | 45.0% | |
| AATGAGGTGCATTCTCTCTG+TGG | - | chr1.4:23443763-23443782 | MS.gene88594:CDS | 45.0% | |
| AGAAGAGAAGAGACGACAGA+GGG | - | chr1.4:23445162-23445181 | MS.gene88594:intron | 45.0% | |
| ATAACACTCGGTACAGTGCT+GGG | - | chr1.4:23444773-23444792 | MS.gene88594:intron | 45.0% | |
| CAACACTAATAGCTGCACTC+GGG | - | chr1.4:23443068-23443087 | MS.gene88594:CDS | 45.0% | |
| CATTCTCTCTGTGGTGTTCT+TGG | - | chr1.4:23443772-23443791 | MS.gene88594:CDS | 45.0% | |
| CTCTTCTTCTCTCTGTTGTC+TGG | + | chr1.4:23445149-23445168 | None:intergenic | 45.0% | |
| GACCTGATATGGGGAATTTC+AGG | - | chr1.4:23444750-23444769 | MS.gene88594:intron | 45.0% | |
| GCAACACTAATAGCTGCACT+CGG | - | chr1.4:23443067-23443086 | MS.gene88594:CDS | 45.0% | |
| GCATCTTCGTGGTCTTCAAA+AGG | - | chr1.4:23443581-23443600 | MS.gene88594:CDS | 45.0% | |
| GCTTGTTCTCTGACCTGATA+TGG | - | chr1.4:23444739-23444758 | MS.gene88594:intron | 45.0% | |
| GGAACATGATATGAGCTCTC+CGG | - | chr1.4:23443090-23443109 | MS.gene88594:CDS | 45.0% | |
| GGACAAAGACCGTATGTTGA+TGG | - | chr1.4:23442940-23442959 | MS.gene88594:CDS | 45.0% | |
| GGTATAGCCACAAAGTTGAG+AGG | + | chr1.4:23445864-23445883 | None:intergenic | 45.0% | |
| GTGTGTTCTCTTTCCAGCAA+TGG | - | chr1.4:23444919-23444938 | MS.gene88594:CDS | 45.0% | |
| TACTGCACCTCTCAACTTTG+TGG | - | chr1.4:23445854-23445873 | MS.gene88594:intron | 45.0% | |
| TCCTACTCTGGTCGTCATAA+CGG | - | chr1.4:23445804-23445823 | MS.gene88594:intron | 45.0% | |
| TCTCTGTGGTGTTCTTGGAT+TGG | - | chr1.4:23443777-23443796 | MS.gene88594:CDS | 45.0% | |
| TGATGGGGTAAGCTTCAAAG+TGG | - | chr1.4:23445003-23445022 | MS.gene88594:intron | 45.0% | |
| TGTTGCAATCTCAGCTTCCT+TGG | + | chr1.4:23443053-23443072 | None:intergenic | 45.0% | |
| ! | GTATGTTGATGGAGCTGGAA+AGG | - | chr1.4:23442951-23442970 | MS.gene88594:CDS | 45.0% |
| !! | TGTTGAAAGAGCGCCTCTTT+CGG | + | chr1.4:23444165-23444184 | None:intergenic | 45.0% |
| AAGTTTGCATGGGACTCAGG+TGG | - | chr1.4:23443831-23443850 | MS.gene88594:CDS | 50.0% | |
| ACCTGAGTCCCATGCAAACT+TGG | + | chr1.4:23443832-23443851 | None:intergenic | 50.0% | |
| ACTGTCATTATAGGTCCGCG+TGG | + | chr1.4:23444901-23444920 | None:intergenic | 50.0% | |
| ATTGAGTTCCGTCGAGGTGT+AGG | + | chr1.4:23445750-23445769 | None:intergenic | 50.0% | |
| CGATATTGGAGAGAGCGAGA+AGG | - | chr1.4:23442919-23442938 | MS.gene88594:CDS | 50.0% | |
| GATAACACTCGGTACAGTGC+TGG | - | chr1.4:23444772-23444791 | MS.gene88594:intron | 50.0% | |
| GCTTGCATCTGTCACACCAT+TGG | - | chr1.4:23443374-23443393 | MS.gene88594:intron | 50.0% | |
| GGCTGTCTTAACCCTACTAG+AGG | - | chr1.4:23445464-23445483 | MS.gene88594:intron | 50.0% | |
| GTGGCTGTTTGCTTGTGAAG+AGG | - | chr1.4:23444638-23444657 | MS.gene88594:intron | 50.0% | |
| TCAGGGGCAGTACTTGTATC+AGG | + | chr1.4:23444393-23444412 | None:intergenic | 50.0% | |
| TCATCAATCCCTTGCAGCCA+AGG | - | chr1.4:23443033-23443052 | MS.gene88594:intron | 50.0% | |
| TCCAAGTTTGCATGGGACTC+AGG | - | chr1.4:23443828-23443847 | MS.gene88594:CDS | 50.0% | |
| TCCGTTATGACGACCAGAGT+AGG | + | chr1.4:23445808-23445827 | None:intergenic | 50.0% | |
| TGTGCAAATGGCAACAGCGT+CGG | - | chr1.4:23445696-23445715 | MS.gene88594:intron | 50.0% | |
| TTAAACTTGGGGAGGGGACT+CGG | + | chr1.4:23445925-23445944 | None:intergenic | 50.0% | |
| ! | AGACCGTATGTTGATGGAGC+TGG | - | chr1.4:23442946-23442965 | MS.gene88594:CDS | 50.0% |
| CCTCGACGGAACTCAATGAG+CGG | - | chr1.4:23445753-23445772 | MS.gene88594:intron | 55.0% | |
| CTATGCCTCCTACACCTCGA+CGG | - | chr1.4:23445739-23445758 | MS.gene88594:intron | 55.0% | |
| CTCAGCTTCCTTGGCTGCAA+GGG | + | chr1.4:23443044-23443063 | None:intergenic | 55.0% | |
| GATGTGAGTGTCAGCAGCAC+AGG | - | chr1.4:23443507-23443526 | MS.gene88594:CDS | 55.0% | |
| GTCGGCTATGGCAATGGCAA+TGG | - | chr1.4:23445714-23445733 | MS.gene88594:intron | 55.0% | |
| TAAACTTGGGGAGGGGACTC+GGG | + | chr1.4:23445924-23445943 | None:intergenic | 55.0% | |
| TCTCAGCTTCCTTGGCTGCA+AGG | + | chr1.4:23443045-23443064 | None:intergenic | 55.0% | |
| TTTGCAGGCTTCGGCAGAAG+TGG | - | chr1.4:23444272-23444291 | MS.gene88594:intron | 55.0% | |
| !! | AACAGCGTCGGCTATGGCAA+TGG | - | chr1.4:23445708-23445727 | MS.gene88594:intron | 55.0% |
| !! | AATGGCAACAGCGTCGGCTA+TGG | - | chr1.4:23445702-23445721 | MS.gene88594:intron | 55.0% |
| !! | CTTTCTGAAGTCGGTCCGAC+TGG | + | chr1.4:23443729-23443748 | None:intergenic | 55.0% |
| CCGCTCATTGAGTTCCGTCG+AGG | + | chr1.4:23445756-23445775 | None:intergenic | 60.0% | |
| GAGTTCCGTCGAGGTGTAGG+AGG | + | chr1.4:23445747-23445766 | None:intergenic | 60.0% | |
| GTGAGTGTCAGCAGCACAGG+TGG | - | chr1.4:23443510-23443529 | MS.gene88594:CDS | 60.0% | |
| TGACGACCAGAGTAGGAGCG+CGG | + | chr1.4:23445801-23445820 | None:intergenic | 60.0% | |
| CACACACCGCGCTCCTACTC+TGG | - | chr1.4:23445792-23445811 | MS.gene88594:intron | 65.0% | |
| TTGGGGAGGGGACTCGGGTT+CGG | + | chr1.4:23445919-23445938 | None:intergenic | 65.0% | |
| ! | ACTCGGTACAGTGCTGGGCG+AGG | - | chr1.4:23444778-23444797 | MS.gene88594:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 23441971 | 23445944 | 23441971 | ID=MS.gene88594 |
| chr1.4 | mRNA | 23441971 | 23445944 | 23441971 | ID=MS.gene88594.t1;Parent=MS.gene88594 |
| chr1.4 | exon | 23445870 | 23445944 | 23445870 | ID=MS.gene88594.t1.exon1;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23445870 | 23445944 | 23445870 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23444804 | 23445007 | 23444804 | ID=MS.gene88594.t1.exon2;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23444804 | 23445007 | 23444804 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23444307 | 23444579 | 23444307 | ID=MS.gene88594.t1.exon3;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23444307 | 23444579 | 23444307 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23443970 | 23444185 | 23443970 | ID=MS.gene88594.t1.exon4;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23443970 | 23444185 | 23443970 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23443716 | 23443871 | 23443716 | ID=MS.gene88594.t1.exon5;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23443716 | 23443871 | 23443716 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23443477 | 23443636 | 23443477 | ID=MS.gene88594.t1.exon6;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23443477 | 23443636 | 23443477 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23443229 | 23443380 | 23443229 | ID=MS.gene88594.t1.exon7;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23443229 | 23443380 | 23443229 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23443056 | 23443143 | 23443056 | ID=MS.gene88594.t1.exon8;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23443056 | 23443143 | 23443056 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23442906 | 23442979 | 23442906 | ID=MS.gene88594.t1.exon9;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23442906 | 23442979 | 23442906 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23442732 | 23442806 | 23442732 | ID=MS.gene88594.t1.exon10;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23442732 | 23442806 | 23442732 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| chr1.4 | exon | 23441971 | 23442327 | 23441971 | ID=MS.gene88594.t1.exon11;Parent=MS.gene88594.t1 |
| chr1.4 | CDS | 23441971 | 23442327 | 23441971 | ID=cds.MS.gene88594.t1;Parent=MS.gene88594.t1 |
| Gene Sequence |
| Protein sequence |
