Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89438.t1 | XP_024635454.1 | 96.6 | 293 | 10 | 0 | 1 | 293 | 1 | 293 | 1.70E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89438.t1 | P46519 | 30.7 | 137 | 95 | 0 | 41 | 177 | 14 | 150 | 2.1e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89438.t1 | A0A072V5S0 | 96.6 | 293 | 10 | 0 | 1 | 293 | 1 | 293 | 1.2e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene89438 | 0.801954 | 7.06E-49 | -1.69E-46 |
| MS.gene049150 | MS.gene89438 | 0.827595 | 1.43E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene89438 | 0.81098 | 8.80E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene89438 | 0.832788 | 7.74E-56 | -1.69E-46 |
| MS.gene050750 | MS.gene89438 | 0.813366 | 2.65E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene89438 | 0.819434 | 1.16E-52 | -1.69E-46 |
| MS.gene051926 | MS.gene89438 | -0.801355 | 9.36E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene89438 | 0.826167 | 3.15E-54 | -1.69E-46 |
| MS.gene053494 | MS.gene89438 | 0.849834 | 2.51E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene89438 | 0.813887 | 2.04E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene89438 | 0.817338 | 3.47E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene89438 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene89438 | 0.808546 | 2.94E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene89438 | 0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene89438 | 0.824268 | 8.85E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene89438 | 0.829752 | 4.32E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene89438 | 0.847646 | 1.01E-59 | -1.69E-46 |
| MS.gene056723 | MS.gene89438 | 0.818555 | 1.84E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene89438 | -0.833699 | 4.59E-56 | -1.69E-46 |
| MS.gene057194 | MS.gene89438 | 0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene057639 | MS.gene89438 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene89438 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene89438 | 0.816215 | 6.20E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene89438 | 0.828987 | 6.62E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene89438 | 0.811521 | 6.71E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene89438 | 0.809455 | 1.88E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene89438 | -0.840994 | 6.22E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89438.t1 | MTR_3g045190 | 96.129 | 310 | 12 | 0 | 1 | 310 | 1 | 310 | 0.0 | 590 |
| MS.gene89438.t1 | MTR_5g088850 | 78.914 | 313 | 55 | 3 | 1 | 302 | 1 | 313 | 1.58e-170 | 478 |
| MS.gene89438.t1 | MTR_5g088850 | 78.846 | 312 | 55 | 3 | 1 | 301 | 1 | 312 | 1.20e-169 | 473 |
| MS.gene89438.t1 | MTR_5g088850 | 78.846 | 312 | 55 | 3 | 1 | 301 | 1 | 312 | 1.28e-169 | 474 |
| MS.gene89438.t1 | MTR_8g028480 | 31.081 | 148 | 96 | 2 | 25 | 172 | 4 | 145 | 9.40e-21 | 87.4 |
| MS.gene89438.t1 | MTR_7g079180 | 27.027 | 148 | 102 | 1 | 25 | 172 | 3 | 144 | 5.17e-15 | 71.6 |
| MS.gene89438.t1 | MTR_7g079180 | 27.027 | 148 | 102 | 1 | 25 | 172 | 4 | 145 | 5.24e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89438.t1 | AT2G44060 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 3.25e-159 | 447 |
| MS.gene89438.t1 | AT2G44060 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 3.25e-159 | 447 |
| MS.gene89438.t1 | AT2G46140 | 29.878 | 164 | 105 | 2 | 13 | 172 | 3 | 160 | 4.79e-17 | 77.8 |
| MS.gene89438.t1 | AT1G01470 | 28.667 | 150 | 101 | 1 | 23 | 172 | 2 | 145 | 7.48e-17 | 76.6 |
Find 89 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATTGATATTAACTATT+TGG | 0.135397 | 3.3:+31787654 | MS.gene89438:CDS |
| ACCTTCAGGCCGAAGGATTT+TGG | 0.160524 | 3.3:+31788147 | MS.gene89438:CDS |
| CCAAATAGTTAATATCAATT+AGG | 0.192476 | 3.3:-31787654 | None:intergenic |
| CAAATAGTTAATATCAATTA+GGG | 0.255310 | 3.3:-31787653 | None:intergenic |
| GTACCGCCTTCTTTGCTAAT+AGG | 0.281765 | 3.3:-31788264 | None:intergenic |
| AGATCAACCTTCACCTTATA+AGG | 0.293664 | 3.3:-31787829 | None:intergenic |
| GGGAAGTATCATTCCTTATA+AGG | 0.326085 | 3.3:+31787816 | MS.gene89438:CDS |
| AGGGGAATCGGTACCGGATT+CGG | 0.326651 | 3.3:-31787634 | None:intergenic |
| TTGAGGAAACAGTTGGGTTT+GGG | 0.329702 | 3.3:+31787524 | MS.gene89438:CDS |
| CGATGGGAGGAAGCTAGTTT+CGG | 0.342864 | 3.3:+31787684 | MS.gene89438:CDS |
| TCGGGTTTGATACCGGATTC+TGG | 0.343130 | 3.3:+31787703 | MS.gene89438:CDS |
| ATTGAGGAAACAGTTGGGTT+TGG | 0.356214 | 3.3:+31787523 | MS.gene89438:CDS |
| GATGGGAGGAAGCTAGTTTC+GGG | 0.364581 | 3.3:+31787685 | MS.gene89438:CDS |
| AGGGTTTCATTCAAGACATT+GGG | 0.374827 | 3.3:+31787494 | MS.gene89438:CDS |
| TACATATGCTGATATTCAAC+CGG | 0.384028 | 3.3:+31787795 | MS.gene89438:CDS |
| TCATCATAAATCAAAGTAAC+AGG | 0.388586 | 3.3:-31787763 | None:intergenic |
| GAAACCAACTGCAGATGTTT+CGG | 0.390895 | 3.3:+31787546 | MS.gene89438:CDS |
| ATAGTTGATGTTCCTGTGAT+TGG | 0.392201 | 3.3:+31787853 | MS.gene89438:CDS |
| ATTGATGTTGACACACCCTT+TGG | 0.403399 | 3.3:+31788228 | MS.gene89438:CDS |
| TTGATCTTCCAATCACCTTC+AGG | 0.405514 | 3.3:+31788133 | MS.gene89438:CDS |
| ATATCAGGCTTGTATGGAAT+CGG | 0.407998 | 3.3:-31787913 | None:intergenic |
| TAAACCAGAAATAGTGAAAA+GGG | 0.409076 | 3.3:+31787420 | MS.gene89438:CDS |
| TTATAAGGAATGATACTTCC+CGG | 0.412721 | 3.3:-31787814 | None:intergenic |
| ACAAAAGGAAGGTGAGGAAA+AGG | 0.421788 | 3.3:+31787450 | MS.gene89438:CDS |
| AGATCAATATCAGGCTTGTA+TGG | 0.422032 | 3.3:-31787919 | None:intergenic |
| TGCTATTCTTCATTTGAAGT+TGG | 0.426339 | 3.3:+31787984 | MS.gene89438:CDS |
| ACTCAATGCCCTTGATTATG+AGG | 0.431327 | 3.3:+31788032 | MS.gene89438:CDS |
| TCCTTCGGCCTGAAGGTGAT+TGG | 0.431595 | 3.3:-31788141 | None:intergenic |
| CCCAAAATCCTTCGGCCTGA+AGG | 0.452825 | 3.3:-31788148 | None:intergenic |
| TTAATATCAATTAGGGGAAT+CGG | 0.452858 | 3.3:-31787646 | None:intergenic |
| ATAAACCAGAAATAGTGAAA+AGG | 0.464547 | 3.3:+31787419 | MS.gene89438:CDS |
| GAAAAGGGGTGAAGAACAAA+AGG | 0.467028 | 3.3:+31787435 | MS.gene89438:CDS |
| GCTAGTTTCGGGTTTGATAC+CGG | 0.478481 | 3.3:+31787696 | MS.gene89438:CDS |
| AACTATTTGGTTGAGAGCGA+TGG | 0.481277 | 3.3:+31787667 | MS.gene89438:CDS |
| CAAAAGGAAGGTGAGGAAAA+GGG | 0.483494 | 3.3:+31787451 | MS.gene89438:CDS |
| TCATGCACATGGCGAGGAAA+CGG | 0.487418 | 3.3:+31787732 | MS.gene89438:CDS |
| AAGGGTTTCATTCAAGACAT+TGG | 0.489962 | 3.3:+31787493 | MS.gene89438:CDS |
| AGACATTGGGGAGAAGATTG+AGG | 0.492962 | 3.3:+31787507 | MS.gene89438:CDS |
| TGGAAGGATCACTATACCTA+TGG | 0.493367 | 3.3:+31787873 | MS.gene89438:CDS |
| GAGAAGATTGAGGAAACAGT+TGG | 0.495120 | 3.3:+31787517 | MS.gene89438:CDS |
| CTCCTTACTCTTCTTGAGAC+GGG | 0.498996 | 3.3:-31788289 | None:intergenic |
| TATCAGGCTTGTATGGAATC+GGG | 0.508761 | 3.3:-31787912 | None:intergenic |
| TGGCTTGGTGATGATAGGAT+TGG | 0.510174 | 3.3:+31788057 | MS.gene89438:CDS |
| TCTCATAAAGAATCCGAATC+CGG | 0.510443 | 3.3:+31787621 | MS.gene89438:CDS |
| GCATGAATTGTACCAGAATC+CGG | 0.513122 | 3.3:-31787715 | None:intergenic |
| TGGGACATGATGAGAGGAAA+AGG | 0.514116 | 3.3:+31788180 | MS.gene89438:CDS |
| TCCAATCACCTTCAGGCCGA+AGG | 0.514304 | 3.3:+31788140 | MS.gene89438:CDS |
| GGCAATTTCATCGCTCCAAA+GGG | 0.514585 | 3.3:-31788243 | None:intergenic |
| AGAAGATTGAGGAAACAGTT+GGG | 0.514812 | 3.3:+31787518 | MS.gene89438:CDS |
| ATGCCCTTGATTATGAGGTA+TGG | 0.514840 | 3.3:+31788037 | MS.gene89438:CDS |
| GAAGGTGATTGGAAGATCAA+TGG | 0.521850 | 3.3:-31788130 | None:intergenic |
| ACTATTTGGTTGAGAGCGAT+GGG | 0.525582 | 3.3:+31787668 | MS.gene89438:CDS |
| CCTCCTTACTCTTCTTGAGA+CGG | 0.529375 | 3.3:-31788290 | None:intergenic |
| TCAATTAGGGGAATCGGTAC+CGG | 0.529894 | 3.3:-31787640 | None:intergenic |
| AGGTATGGCTTGGTGATGAT+AGG | 0.530326 | 3.3:+31788052 | MS.gene89438:CDS |
| GGATTTCTCAATACAGTGAA+GGG | 0.538251 | 3.3:+31787475 | MS.gene89438:CDS |
| AAATTGCCTATTAGCAAAGA+AGG | 0.540155 | 3.3:+31788258 | MS.gene89438:CDS |
| CTTGATTATGAGGTATGGCT+TGG | 0.543545 | 3.3:+31788042 | MS.gene89438:CDS |
| ATGATGAGAGGAAAAGGTAC+AGG | 0.545961 | 3.3:+31788186 | MS.gene89438:CDS |
| TATCATTCCTTATAAGGTGA+AGG | 0.548759 | 3.3:+31787822 | MS.gene89438:CDS |
| CAAGCCATACCTCATAATCA+AGG | 0.553144 | 3.3:-31788041 | None:intergenic |
| AGTGCTGACCCAAAATCCTT+CGG | 0.556973 | 3.3:-31788156 | None:intergenic |
| TACCCGTCTCAAGAAGAGTA+AGG | 0.565557 | 3.3:+31788287 | MS.gene89438:CDS |
| GGTACAGGATACACTATGAA+AGG | 0.566561 | 3.3:+31788201 | MS.gene89438:CDS |
| AGGCAATTTCATCGCTCCAA+AGG | 0.571299 | 3.3:-31788244 | None:intergenic |
| TGGATTTCTCAATACAGTGA+AGG | 0.575361 | 3.3:+31787474 | MS.gene89438:CDS |
| ATAGTGATCCTTCCAATCAC+AGG | 0.589173 | 3.3:-31787865 | None:intergenic |
| CTTGGTGATGATAGGATTGG+AGG | 0.590333 | 3.3:+31788060 | MS.gene89438:CDS |
| ATCTCCGAAACATCTGCAGT+TGG | 0.593488 | 3.3:-31787550 | None:intergenic |
| AGGGGTGAAGAACAAAAGGA+AGG | 0.598618 | 3.3:+31787439 | MS.gene89438:CDS |
| TACAATTCATGCACATGGCG+AGG | 0.611195 | 3.3:+31787726 | MS.gene89438:CDS |
| ACATATGCTGATATTCAACC+GGG | 0.617088 | 3.3:+31787796 | MS.gene89438:CDS |
| GGGTTTCATTCAAGACATTG+GGG | 0.618306 | 3.3:+31787495 | MS.gene89438:CDS |
| TTGATGTTCCTGTGATTGGA+AGG | 0.620198 | 3.3:+31787857 | MS.gene89438:CDS |
| AAGGAAGGTGAGGAAAAGGG+TGG | 0.625777 | 3.3:+31787454 | MS.gene89438:CDS |
| AAGAAGAGTAAGGAGGATGG+TGG | 0.626714 | 3.3:+31788297 | MS.gene89438:CDS |
| AAGCCATACCTCATAATCAA+GGG | 0.628460 | 3.3:-31788040 | None:intergenic |
| TGAAGAACAAAAGGAAGGTG+AGG | 0.629320 | 3.3:+31787444 | MS.gene89438:CDS |
| CTCAAGAAGAGTAAGGAGGA+TGG | 0.634584 | 3.3:+31788294 | MS.gene89438:CDS |
| TGGTGGAGATGATGATGATG+AGG | 0.644185 | 3.3:+31788314 | MS.gene89438:CDS |
| CTTCAAATGAAGAATAGCAA+CGG | 0.645167 | 3.3:-31787980 | None:intergenic |
| GCACTTTGGGACATGATGAG+AGG | 0.649658 | 3.3:+31788174 | MS.gene89438:CDS |
| CTATGTAGAGATGTCGACAT+CGG | 0.653141 | 3.3:+31787396 | None:intergenic |
| AAACCAGAAATAGTGAAAAG+GGG | 0.654731 | 3.3:+31787421 | MS.gene89438:CDS |
| TCTGGTACAATTCATGCACA+TGG | 0.656784 | 3.3:+31787721 | MS.gene89438:CDS |
| CCGTCTCAAGAAGAGTAAGG+AGG | 0.673482 | 3.3:+31788290 | MS.gene89438:CDS |
| ATTTGGTTGAGAGCGATGGG+AGG | 0.702091 | 3.3:+31787671 | MS.gene89438:CDS |
| AAATAGTTAATATCAATTAG+GGG | 0.704056 | 3.3:-31787652 | None:intergenic |
| TTGCCTATTAGCAAAGAAGG+CGG | 0.725605 | 3.3:+31788261 | MS.gene89438:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTTAATATCAATTAG+GGG | - | chr3.3:31787655-31787674 | None:intergenic | 15.0% |
| !! | CAAATAGTTAATATCAATTA+GGG | - | chr3.3:31787656-31787675 | None:intergenic | 15.0% |
| !! | AAATTTATTACTATCATGCT+TGG | - | chr3.3:31788464-31788483 | None:intergenic | 20.0% |
| !! | AATCAAATTTCTACAAGTTA+GGG | - | chr3.3:31788765-31788784 | None:intergenic | 20.0% |
| !! | AATTATGCATACACAAAAAA+GGG | - | chr3.3:31788383-31788402 | None:intergenic | 20.0% |
| !! | ACAAAAGGAAAAATAGTTAA+TGG | - | chr3.3:31789302-31789321 | None:intergenic | 20.0% |
| !! | CCAAATAGTTAATATCAATT+AGG | - | chr3.3:31787657-31787676 | None:intergenic | 20.0% |
| !! | CCTAATTGATATTAACTATT+TGG | + | chr3.3:31787654-31787673 | MS.gene89438:CDS | 20.0% |
| !! | TATTATTCAGCATTGTTAAA+TGG | + | chr3.3:31788575-31788594 | MS.gene89438:intron | 20.0% |
| !! | TTAAATACACTATAGATACA+AGG | - | chr3.3:31789251-31789270 | None:intergenic | 20.0% |
| !!! | GTTTGAAGTATTTCTTTTAA+TGG | + | chr3.3:31789213-31789232 | MS.gene89438:intron | 20.0% |
| !!! | TTAACTATTTTTCCTTTTGT+AGG | + | chr3.3:31789302-31789321 | MS.gene89438:intron | 20.0% |
| !!! | TTACTATATTTGTTACTTCA+GGG | + | chr3.3:31788786-31788805 | MS.gene89438:intron | 20.0% |
| ! | ATAAACCAGAAATAGTGAAA+AGG | + | chr3.3:31787419-31787438 | MS.gene89438:CDS | 25.0% |
| ! | ATCAAATTTCTACAAGTTAG+GGG | - | chr3.3:31788764-31788783 | None:intergenic | 25.0% |
| ! | ATTGAATAATCTGTACTATG+AGG | + | chr3.3:31788940-31788959 | MS.gene89438:intron | 25.0% |
| ! | ATTTGAAAAACAACATTCTG+AGG | - | chr3.3:31788516-31788535 | None:intergenic | 25.0% |
| ! | CAATCAAATTTCTACAAGTT+AGG | - | chr3.3:31788766-31788785 | None:intergenic | 25.0% |
| ! | CAATTATGCATACACAAAAA+AGG | - | chr3.3:31788384-31788403 | None:intergenic | 25.0% |
| ! | CTGCAAAAATTGAAAAATGT+GGG | + | chr3.3:31788100-31788119 | MS.gene89438:CDS | 25.0% |
| ! | CTTCACAGATATTAAATAGA+CGG | - | chr3.3:31789125-31789144 | None:intergenic | 25.0% |
| ! | TAAACCAGAAATAGTGAAAA+GGG | + | chr3.3:31787420-31787439 | MS.gene89438:CDS | 25.0% |
| ! | TCATCATAAATCAAAGTAAC+AGG | - | chr3.3:31787766-31787785 | None:intergenic | 25.0% |
| ! | TCTGCAAAAATTGAAAAATG+TGG | + | chr3.3:31788099-31788118 | MS.gene89438:CDS | 25.0% |
| ! | TGGACAATTTAGTTATGTTA+AGG | + | chr3.3:31788859-31788878 | MS.gene89438:intron | 25.0% |
| ! | TTAATATCAATTAGGGGAAT+CGG | - | chr3.3:31787649-31787668 | None:intergenic | 25.0% |
| ! | TTCACAGATATTAAATAGAC+GGG | - | chr3.3:31789124-31789143 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGATCAATATC+AGG | - | chr3.3:31787931-31787950 | None:intergenic | 25.0% |
| !! | GCTTTGTCAAGATTAATTTT+AGG | - | chr3.3:31787583-31787602 | None:intergenic | 25.0% |
| !! | GTTACTATATTTGTTACTTC+AGG | + | chr3.3:31788785-31788804 | MS.gene89438:intron | 25.0% |
| !! | TACTATATTTGTTACTTCAG+GGG | + | chr3.3:31788787-31788806 | MS.gene89438:intron | 25.0% |
| !!! | AACAAGAATGATTTTGACTT+AGG | + | chr3.3:31788009-31788028 | MS.gene89438:CDS | 25.0% |
| !!! | TGTTGTTTTTCAAATTCTGA+TGG | + | chr3.3:31788521-31788540 | MS.gene89438:intron | 25.0% |
| !!! | TTTATGTTTCAAGTTGAGAT+GGG | - | chr3.3:31788912-31788931 | None:intergenic | 25.0% |
| !!! | TTTTATGTTTCAAGTTGAGA+TGG | - | chr3.3:31788913-31788932 | None:intergenic | 25.0% |
| AAAAGCAAAAACCGAAATTC+AGG | + | chr3.3:31788993-31789012 | MS.gene89438:intron | 30.0% | |
| AAACCAGAAATAGTGAAAAG+GGG | + | chr3.3:31787421-31787440 | MS.gene89438:CDS | 30.0% | |
| AAATTGCCTATTAGCAAAGA+AGG | + | chr3.3:31788258-31788277 | MS.gene89438:CDS | 30.0% | |
| ACTATACCTATGGAAAAAAC+TGG | + | chr3.3:31787883-31787902 | MS.gene89438:CDS | 30.0% | |
| CTTCAAATGAAGAATAGCAA+CGG | - | chr3.3:31787983-31788002 | None:intergenic | 30.0% | |
| GTTGAAACTGAAATTTGTCT+AGG | + | chr3.3:31788427-31788446 | MS.gene89438:intron | 30.0% | |
| TACATATGCTGATATTCAAC+CGG | + | chr3.3:31787795-31787814 | MS.gene89438:CDS | 30.0% | |
| TATCATTCCTTATAAGGTGA+AGG | + | chr3.3:31787822-31787841 | MS.gene89438:CDS | 30.0% | |
| TGTCTATCAGAGTTTCAATA+TGG | + | chr3.3:31788839-31788858 | MS.gene89438:intron | 30.0% | |
| TTATAAGGAATGATACTTCC+CGG | - | chr3.3:31787817-31787836 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTCATTTGAAGT+TGG | + | chr3.3:31787984-31788003 | MS.gene89438:CDS | 30.0% |
| !!! | ATTTCTCCAGTTTTTTCCAT+AGG | - | chr3.3:31787892-31787911 | None:intergenic | 30.0% |
| !!! | GTGTTTATATGGTGGATTTT+TGG | + | chr3.3:31788694-31788713 | MS.gene89438:intron | 30.0% |
| AAATTTCTACAAGTTAGGGG+TGG | - | chr3.3:31788761-31788780 | None:intergenic | 35.0% | |
| AAGCCATACCTCATAATCAA+GGG | - | chr3.3:31788043-31788062 | None:intergenic | 35.0% | |
| AAGGGTTTCATTCAAGACAT+TGG | + | chr3.3:31787493-31787512 | MS.gene89438:CDS | 35.0% | |
| ACATATGCTGATATTCAACC+GGG | + | chr3.3:31787796-31787815 | MS.gene89438:CDS | 35.0% | |
| ACCATATAAACACACCATTG+CGG | - | chr3.3:31788687-31788706 | None:intergenic | 35.0% | |
| AGAAGATTGAGGAAACAGTT+GGG | + | chr3.3:31787518-31787537 | MS.gene89438:CDS | 35.0% | |
| AGATCAACCTTCACCTTATA+AGG | - | chr3.3:31787832-31787851 | None:intergenic | 35.0% | |
| AGATCAATATCAGGCTTGTA+TGG | - | chr3.3:31787922-31787941 | None:intergenic | 35.0% | |
| AGGGTTTCATTCAAGACATT+GGG | + | chr3.3:31787494-31787513 | MS.gene89438:CDS | 35.0% | |
| ATATCAGGCTTGTATGGAAT+CGG | - | chr3.3:31787916-31787935 | None:intergenic | 35.0% | |
| CTATAGATACAAGGAACAGT+TGG | - | chr3.3:31789242-31789261 | None:intergenic | 35.0% | |
| GGATTTCTCAATACAGTGAA+GGG | + | chr3.3:31787475-31787494 | MS.gene89438:CDS | 35.0% | |
| TCTCATAAAGAATCCGAATC+CGG | + | chr3.3:31787621-31787640 | MS.gene89438:CDS | 35.0% | |
| TGGATTTCTCAATACAGTGA+AGG | + | chr3.3:31787474-31787493 | MS.gene89438:CDS | 35.0% | |
| TGTGTCAACATCCTGAATTT+CGG | - | chr3.3:31789007-31789026 | None:intergenic | 35.0% | |
| TTGTCATAGCCAATTTGTGA+AGG | + | chr3.3:31788637-31788656 | MS.gene89438:intron | 35.0% | |
| ! | ATAGTTGATGTTCCTGTGAT+TGG | + | chr3.3:31787853-31787872 | MS.gene89438:CDS | 35.0% |
| !! | GGGAAGTATCATTCCTTATA+AGG | + | chr3.3:31787816-31787835 | MS.gene89438:CDS | 35.0% |
| AACTATTTGGTTGAGAGCGA+TGG | + | chr3.3:31787667-31787686 | MS.gene89438:CDS | 40.0% | |
| ACAAAAGGAAGGTGAGGAAA+AGG | + | chr3.3:31787450-31787469 | MS.gene89438:CDS | 40.0% | |
| ACTATTTGGTTGAGAGCGAT+GGG | + | chr3.3:31787668-31787687 | MS.gene89438:CDS | 40.0% | |
| ACTCAATGCCCTTGATTATG+AGG | + | chr3.3:31788032-31788051 | MS.gene89438:CDS | 40.0% | |
| ATAGTGATCCTTCCAATCAC+AGG | - | chr3.3:31787868-31787887 | None:intergenic | 40.0% | |
| ATGCCCTTGATTATGAGGTA+TGG | + | chr3.3:31788037-31788056 | MS.gene89438:CDS | 40.0% | |
| ATTGAGGAAACAGTTGGGTT+TGG | + | chr3.3:31787523-31787542 | MS.gene89438:CDS | 40.0% | |
| ATTGATGTTGACACACCCTT+TGG | + | chr3.3:31788228-31788247 | MS.gene89438:CDS | 40.0% | |
| CAAAAGGAAGGTGAGGAAAA+GGG | + | chr3.3:31787451-31787470 | MS.gene89438:CDS | 40.0% | |
| CAAGCCATACCTCATAATCA+AGG | - | chr3.3:31788044-31788063 | None:intergenic | 40.0% | |
| CACAAGTCACAAGTTTCAGT+AGG | + | chr3.3:31789096-31789115 | MS.gene89438:intron | 40.0% | |
| CTTGATTATGAGGTATGGCT+TGG | + | chr3.3:31788042-31788061 | MS.gene89438:CDS | 40.0% | |
| GAAAAGGGGTGAAGAACAAA+AGG | + | chr3.3:31787435-31787454 | MS.gene89438:CDS | 40.0% | |
| GAAACCAACTGCAGATGTTT+CGG | + | chr3.3:31787546-31787565 | MS.gene89438:CDS | 40.0% | |
| GAAGGTGATTGGAAGATCAA+TGG | - | chr3.3:31788133-31788152 | None:intergenic | 40.0% | |
| GAGAAGATTGAGGAAACAGT+TGG | + | chr3.3:31787517-31787536 | MS.gene89438:CDS | 40.0% | |
| GCAATGGTGTGTTTATATGG+TGG | + | chr3.3:31788686-31788705 | MS.gene89438:intron | 40.0% | |
| GCATGAATTGTACCAGAATC+CGG | - | chr3.3:31787718-31787737 | None:intergenic | 40.0% | |
| GCATTGTTAAATGGTCGCTA+TGG | + | chr3.3:31788584-31788603 | MS.gene89438:intron | 40.0% | |
| GGGTTTCATTCAAGACATTG+GGG | + | chr3.3:31787495-31787514 | MS.gene89438:CDS | 40.0% | |
| GGTACAGGATACACTATGAA+AGG | + | chr3.3:31788201-31788220 | MS.gene89438:CDS | 40.0% | |
| TATCAGGCTTGTATGGAATC+GGG | - | chr3.3:31787915-31787934 | None:intergenic | 40.0% | |
| TCTGGTACAATTCATGCACA+TGG | + | chr3.3:31787721-31787740 | MS.gene89438:CDS | 40.0% | |
| TGAAGAACAAAAGGAAGGTG+AGG | + | chr3.3:31787444-31787463 | MS.gene89438:CDS | 40.0% | |
| TGGAAGGATCACTATACCTA+TGG | + | chr3.3:31787873-31787892 | MS.gene89438:CDS | 40.0% | |
| TTGAGGAAACAGTTGGGTTT+GGG | + | chr3.3:31787524-31787543 | MS.gene89438:CDS | 40.0% | |
| TTGATCTTCCAATCACCTTC+AGG | + | chr3.3:31788133-31788152 | MS.gene89438:CDS | 40.0% | |
| TTGATGTTCCTGTGATTGGA+AGG | + | chr3.3:31787857-31787876 | MS.gene89438:CDS | 40.0% | |
| TTGCCTATTAGCAAAGAAGG+CGG | + | chr3.3:31788261-31788280 | MS.gene89438:CDS | 40.0% | |
| TTGTTAAATGGTCGCTATGG+CGG | + | chr3.3:31788587-31788606 | MS.gene89438:intron | 40.0% | |
| ! | ATGATGAGAGGAAAAGGTAC+AGG | + | chr3.3:31788186-31788205 | MS.gene89438:CDS | 40.0% |
| ! | TCACCCCTTTTCACTATTTC+TGG | - | chr3.3:31787427-31787446 | None:intergenic | 40.0% |
| !! | GAAGGCATTCCTTCACAAAT+TGG | - | chr3.3:31788649-31788668 | None:intergenic | 40.0% |
| AAGAAGAGTAAGGAGGATGG+TGG | + | chr3.3:31788297-31788316 | MS.gene89438:CDS | 45.0% | |
| AGACATTGGGGAGAAGATTG+AGG | + | chr3.3:31787507-31787526 | MS.gene89438:CDS | 45.0% | |
| AGGCAATTTCATCGCTCCAA+AGG | - | chr3.3:31788247-31788266 | None:intergenic | 45.0% | |
| AGGGGTGAAGAACAAAAGGA+AGG | + | chr3.3:31787439-31787458 | MS.gene89438:CDS | 45.0% | |
| AGGGGTGGCATTAGTTATAC+CGG | - | chr3.3:31788746-31788765 | None:intergenic | 45.0% | |
| ATCTCCGAAACATCTGCAGT+TGG | - | chr3.3:31787553-31787572 | None:intergenic | 45.0% | |
| CCTCCTTACTCTTCTTGAGA+CGG | - | chr3.3:31788293-31788312 | None:intergenic | 45.0% | |
| CTCAAGAAGAGTAAGGAGGA+TGG | + | chr3.3:31788294-31788313 | MS.gene89438:CDS | 45.0% | |
| CTCCTTACTCTTCTTGAGAC+GGG | - | chr3.3:31788292-31788311 | None:intergenic | 45.0% | |
| GCCGCAATGGTGTGTTTATA+TGG | + | chr3.3:31788683-31788702 | MS.gene89438:intron | 45.0% | |
| GGCAATTTCATCGCTCCAAA+GGG | - | chr3.3:31788246-31788265 | None:intergenic | 45.0% | |
| GTACCGCCTTCTTTGCTAAT+AGG | - | chr3.3:31788267-31788286 | None:intergenic | 45.0% | |
| TACAATTCATGCACATGGCG+AGG | + | chr3.3:31787726-31787745 | MS.gene89438:CDS | 45.0% | |
| TACCCGTCTCAAGAAGAGTA+AGG | + | chr3.3:31788287-31788306 | MS.gene89438:CDS | 45.0% | |
| TCAATTAGGGGAATCGGTAC+CGG | - | chr3.3:31787643-31787662 | None:intergenic | 45.0% | |
| TGGGACATGATGAGAGGAAA+AGG | + | chr3.3:31788180-31788199 | MS.gene89438:CDS | 45.0% | |
| TTGTGAAGGAATGCCTTCCA+TGG | + | chr3.3:31788651-31788670 | MS.gene89438:intron | 45.0% | |
| ! | TGGTGGAGATGATGATGATG+AGG | + | chr3.3:31788314-31788333 | MS.gene89438:CDS | 45.0% |
| !! | AGGATTTTGGGTCAGCACTT+TGG | + | chr3.3:31788160-31788179 | MS.gene89438:CDS | 45.0% |
| !! | AGGTATGGCTTGGTGATGAT+AGG | + | chr3.3:31788052-31788071 | MS.gene89438:CDS | 45.0% |
| !! | AGTGCTGACCCAAAATCCTT+CGG | - | chr3.3:31788159-31788178 | None:intergenic | 45.0% |
| !! | AGTTATACCGGTGTTGTCCA+TGG | - | chr3.3:31788734-31788753 | None:intergenic | 45.0% |
| !! | CTTGGTGATGATAGGATTGG+AGG | + | chr3.3:31788060-31788079 | MS.gene89438:CDS | 45.0% |
| !! | GCTAGTTTCGGGTTTGATAC+CGG | + | chr3.3:31787696-31787715 | MS.gene89438:CDS | 45.0% |
| !! | GGATTTTGGGTCAGCACTTT+GGG | + | chr3.3:31788161-31788180 | MS.gene89438:CDS | 45.0% |
| !! | TGGCTTGGTGATGATAGGAT+TGG | + | chr3.3:31788057-31788076 | MS.gene89438:CDS | 45.0% |
| AAACACACCATTGCGGCCTA+CGG | - | chr3.3:31788680-31788699 | None:intergenic | 50.0% | |
| AAGGAAGGTGAGGAAAAGGG+TGG | + | chr3.3:31787454-31787473 | MS.gene89438:CDS | 50.0% | |
| ATTTGGTTGAGAGCGATGGG+AGG | + | chr3.3:31787671-31787690 | MS.gene89438:CDS | 50.0% | |
| CCGTCTCAAGAAGAGTAAGG+AGG | + | chr3.3:31788290-31788309 | MS.gene89438:CDS | 50.0% | |
| TCATGCACATGGCGAGGAAA+CGG | + | chr3.3:31787732-31787751 | MS.gene89438:CDS | 50.0% | |
| TCGGGTTTGATACCGGATTC+TGG | + | chr3.3:31787703-31787722 | MS.gene89438:CDS | 50.0% | |
| TGAAGGAATGCCTTCCATGG+CGG | + | chr3.3:31788654-31788673 | MS.gene89438:intron | 50.0% | |
| ! | ACCTTCAGGCCGAAGGATTT+TGG | + | chr3.3:31788147-31788166 | MS.gene89438:CDS | 50.0% |
| ! | CCTTCAGGCCGAAGGATTTT+GGG | + | chr3.3:31788148-31788167 | MS.gene89438:CDS | 50.0% |
| ! | CGATGGGAGGAAGCTAGTTT+CGG | + | chr3.3:31787684-31787703 | MS.gene89438:CDS | 50.0% |
| ! | GATGGGAGGAAGCTAGTTTC+GGG | + | chr3.3:31787685-31787704 | MS.gene89438:CDS | 50.0% |
| !! | GCACTTTGGGACATGATGAG+AGG | + | chr3.3:31788174-31788193 | MS.gene89438:CDS | 50.0% |
| !! | TATACCGGTGTTGTCCATGG+TGG | - | chr3.3:31788731-31788750 | None:intergenic | 50.0% |
| !! | TGTTGTCCATGGTGGATGGA+GGG | - | chr3.3:31788723-31788742 | None:intergenic | 50.0% |
| CCATCCACCATGGACAACAC+CGG | + | chr3.3:31788724-31788743 | MS.gene89438:intron | 55.0% | |
| CCCAAAATCCTTCGGCCTGA+AGG | - | chr3.3:31788151-31788170 | None:intergenic | 55.0% | |
| TCCAATCACCTTCAGGCCGA+AGG | + | chr3.3:31788140-31788159 | MS.gene89438:CDS | 55.0% | |
| TCCTTCGGCCTGAAGGTGAT+TGG | - | chr3.3:31788144-31788163 | None:intergenic | 55.0% | |
| ! | AGGGGAATCGGTACCGGATT+CGG | - | chr3.3:31787637-31787656 | None:intergenic | 55.0% |
| ! | GTCGCTATGGCGGAATAACG+TGG | + | chr3.3:31788597-31788616 | MS.gene89438:intron | 55.0% |
| !! | GTGTTGTCCATGGTGGATGG+AGG | - | chr3.3:31788724-31788743 | None:intergenic | 55.0% |
| !! | CCGGTGTTGTCCATGGTGGA+TGG | - | chr3.3:31788727-31788746 | None:intergenic | 60.0% |
| !! | TGTCCATGGTGGATGGAGGG+AGG | - | chr3.3:31788720-31788739 | None:intergenic | 60.0% |
| ATGCCTTCCATGGCGGCCGT+AGG | + | chr3.3:31788661-31788680 | MS.gene89438:intron | 65.0% | |
| TGGCCTCCCTCCATCCACCA+TGG | + | chr3.3:31788714-31788733 | MS.gene89438:intron | 65.0% | |
| ATGGCGGCCGTAGGCCGCAA+TGG | + | chr3.3:31788670-31788689 | MS.gene89438:intron | 70.0% | |
| ATTGCGGCCTACGGCCGCCA+TGG | - | chr3.3:31788671-31788690 | None:intergenic | 70.0% | |
| CGGCCTACGGCCGCCATGGA+AGG | - | chr3.3:31788667-31788686 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 31787406 | 31789329 | 31787406 | ID=MS.gene89438 |
| chr3.3 | mRNA | 31787406 | 31789329 | 31787406 | ID=MS.gene89438.t1;Parent=MS.gene89438 |
| chr3.3 | exon | 31787406 | 31788335 | 31787406 | ID=MS.gene89438.t1.exon1;Parent=MS.gene89438.t1 |
| chr3.3 | CDS | 31787406 | 31788335 | 31787406 | ID=cds.MS.gene89438.t1;Parent=MS.gene89438.t1 |
| chr3.3 | exon | 31789324 | 31789329 | 31789324 | ID=MS.gene89438.t1.exon2;Parent=MS.gene89438.t1 |
| chr3.3 | CDS | 31789324 | 31789329 | 31789324 | ID=cds.MS.gene89438.t1;Parent=MS.gene89438.t1 |
| Gene Sequence |
| Protein sequence |
