Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90917.t1 | RHN80124.1 | 94.4 | 54 | 3 | 0 | 4 | 57 | 132 | 185 | 1.50E-19 | 106.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90917.t1 | Q0J2B5 | 48.3 | 60 | 31 | 0 | 57 | 116 | 646 | 705 | 9.9e-09 | 61.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90917.t1 | G7ICN5 | 94.4 | 54 | 3 | 0 | 4 | 57 | 304 | 357 | 1.1e-19 | 106.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050156 | MS.gene90917 | 0.805308 | 1.42E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene90917 | 0.806398 | 8.39E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene90917 | -0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene90917 | 0.834292 | 3.26E-56 | -1.69E-46 |
| MS.gene052896 | MS.gene90917 | 0.814292 | 1.66E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene90917 | 0.808597 | 2.86E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene90917 | 0.802415 | 5.67E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene90917 | 0.808041 | 3.76E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene90917 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene90917 | 0.81178 | 5.90E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene90917 | 0.808689 | 2.74E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene90917 | 0.823475 | 1.36E-53 | -1.69E-46 |
| MS.gene058792 | MS.gene90917 | 0.808033 | 3.78E-50 | -1.69E-46 |
| MS.gene059789 | MS.gene90917 | 0.806122 | 9.59E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene90917 | 0.832648 | 8.38E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90917.t1 | MTR_8g018790 | 89.831 | 59 | 6 | 0 | 58 | 116 | 657 | 715 | 2.04e-27 | 107 |
| MS.gene90917.t1 | MTR_8g018790 | 89.831 | 59 | 6 | 0 | 58 | 116 | 524 | 582 | 2.31e-27 | 107 |
| MS.gene90917.t1 | MTR_1g070940 | 94.444 | 54 | 3 | 0 | 4 | 57 | 304 | 357 | 4.67e-27 | 106 |
| MS.gene90917.t1 | MTR_7g096020 | 66.154 | 65 | 21 | 1 | 4 | 68 | 357 | 420 | 2.05e-20 | 87.8 |
| MS.gene90917.t1 | MTR_1g102450 | 86.842 | 38 | 5 | 0 | 129 | 166 | 80 | 117 | 7.71e-16 | 71.6 |
| MS.gene90917.t1 | MTR_2g069920 | 65.306 | 49 | 17 | 0 | 108 | 156 | 37 | 85 | 1.43e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90917.t1 | AT2G38840 | 69.231 | 52 | 16 | 0 | 4 | 55 | 151 | 202 | 3.17e-17 | 78.6 |
| MS.gene90917.t1 | AT2G38840 | 69.231 | 52 | 16 | 0 | 4 | 55 | 309 | 360 | 5.03e-17 | 78.2 |
Find 39 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTTGCATATTACCTTTC+TGG | 0.158504 | 8.3:-34539145 | None:intergenic |
| CTTCATTTCTAGACCTATTA+TGG | 0.179473 | 8.3:-34538282 | None:intergenic |
| TTAGGTTGGGATTCTATATC+TGG | 0.327816 | 8.3:+34538979 | MS.gene90917:CDS |
| ATCTACAAGGGGTCCATAAT+AGG | 0.352676 | 8.3:+34538269 | MS.gene90917:CDS |
| GCATATTACCTTTCTGGTGT+TGG | 0.358586 | 8.3:-34539139 | None:intergenic |
| GAGAGATGTCTCAAGTTATA+TGG | 0.376690 | 8.3:+34538205 | MS.gene90917:CDS |
| TACTGTTTGTGCAGACAGTT+AGG | 0.405625 | 8.3:+34538961 | MS.gene90917:intron |
| TGGAATTTCTCCTTTGTTCA+AGG | 0.406443 | 8.3:-34538140 | None:intergenic |
| ACCCCTTGTAGATATTCCTT+TGG | 0.430691 | 8.3:-34538259 | None:intergenic |
| AAAGGAGAAATTCCATCATC+AGG | 0.444665 | 8.3:+34538148 | MS.gene90917:CDS |
| GGGGAAAGTTATTGAGGCAT+TGG | 0.470490 | 8.3:+34539029 | MS.gene90917:CDS |
| CTATTCTAAATCACTATTGA+GGG | 0.474048 | 8.3:+34539008 | MS.gene90917:CDS |
| ATACTTGATGCCTTGAACAA+AGG | 0.485240 | 8.3:+34538130 | MS.gene90917:CDS |
| GTTTGTGCAGACAGTTAGGT+TGG | 0.504344 | 8.3:+34538965 | MS.gene90917:intron |
| CAAGTTATATGGTGAAAAGA+AGG | 0.504883 | 8.3:+34538216 | MS.gene90917:CDS |
| CTTCCAAAGGAATATCTACA+AGG | 0.504927 | 8.3:+34538256 | MS.gene90917:CDS |
| ATCATCAGGCTCTCTTGTGG+AGG | 0.507934 | 8.3:+34538162 | MS.gene90917:CDS |
| TCCACAAGAGAGCCTGATGA+TGG | 0.512715 | 8.3:-34538160 | None:intergenic |
| TATGAAAGGATAAAAGATGC+TGG | 0.518130 | 8.3:+34540251 | MS.gene90917:CDS |
| GAGATGAAAGTGCAATATGA+TGG | 0.521070 | 8.3:+34540179 | MS.gene90917:CDS |
| ACACAGTCAAATTATGAAGA+TGG | 0.521206 | 8.3:-34540287 | None:intergenic |
| ACTATTCTAAATCACTATTG+AGG | 0.522038 | 8.3:+34539007 | MS.gene90917:CDS |
| TTTGTGCAGACAGTTAGGTT+GGG | 0.530515 | 8.3:+34538966 | MS.gene90917:intron |
| TTCAATTTGAGCTTTATGAA+AGG | 0.531671 | 8.3:+34540237 | MS.gene90917:CDS |
| TGTAGATATTCCTTTGGAAG+AGG | 0.534463 | 8.3:-34538253 | None:intergenic |
| TCCATCATCAGGCTCTCTTG+TGG | 0.554158 | 8.3:+34538159 | MS.gene90917:CDS |
| CGTTCAACAAAATCTGAAAA+CGG | 0.561122 | 8.3:-34539092 | None:intergenic |
| TGGTGAAAAGAAGGCAACAT+TGG | 0.564071 | 8.3:+34538225 | MS.gene90917:CDS |
| AAGTGCAATATGATGGGATG+TGG | 0.571713 | 8.3:+34540186 | MS.gene90917:CDS |
| GCTTTCAGCCAACACCAGAA+AGG | 0.579849 | 8.3:+34539131 | MS.gene90917:CDS |
| ATTGGATCTACCTCTTCCAA+AGG | 0.598780 | 8.3:+34538243 | MS.gene90917:CDS |
| TTGGGATTCTATATCTGGCG+TGG | 0.600901 | 8.3:+34538984 | MS.gene90917:CDS |
| AGTGCAATATGATGGGATGT+GGG | 0.603416 | 8.3:+34540187 | MS.gene90917:CDS |
| TTCCAAAGGAATATCTACAA+GGG | 0.605993 | 8.3:+34538257 | MS.gene90917:CDS |
| AGATGAAAGTGCAATATGAT+GGG | 0.614959 | 8.3:+34540180 | MS.gene90917:CDS |
| TATTCTAAATCACTATTGAG+GGG | 0.621536 | 8.3:+34539009 | MS.gene90917:CDS |
| TCCAAAGGAATATCTACAAG+GGG | 0.627260 | 8.3:+34538258 | MS.gene90917:CDS |
| ATTCTAAATCACTATTGAGG+GGG | 0.647193 | 8.3:+34539010 | MS.gene90917:CDS |
| CAGTCAAATTATGAAGATGG+CGG | 0.688989 | 8.3:-34540284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAAAAAGATGAA+AGG | - | chr8.3:34539408-34539427 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAAAAGATGAAA+GGG | - | chr8.3:34539407-34539426 | None:intergenic | 15.0% |
| !! | ACTTATATTGAATTATATGA+AGG | + | chr8.3:34538627-34538646 | MS.gene90917:intron | 15.0% |
| !! | TATATGAAGGAAAAAAAAAA+GGG | + | chr8.3:34538640-34538659 | MS.gene90917:intron | 15.0% |
| !! | TTATATGAAGGAAAAAAAAA+AGG | + | chr8.3:34538639-34538658 | MS.gene90917:intron | 15.0% |
| !! | GGAATGAAGAAATAAAAAAA+AGG | + | chr8.3:34538313-34538332 | MS.gene90917:intron | 20.0% |
| !! | TGTATAAGGAGAAATAATTA+AGG | - | chr8.3:34539549-34539568 | None:intergenic | 20.0% |
| !! | TTACCAAAAATTTCTCAATT+AGG | - | chr8.3:34539289-34539308 | None:intergenic | 20.0% |
| !! | TTCCTCAAATATATTCTTAA+GGG | + | chr8.3:34538421-34538440 | MS.gene90917:intron | 20.0% |
| !! | TTTCCTCAAATATATTCTTA+AGG | + | chr8.3:34538420-34538439 | MS.gene90917:intron | 20.0% |
| !!! | AACAATGATTTTTATTCTTG+AGG | - | chr8.3:34539179-34539198 | None:intergenic | 20.0% |
| !!! | ACAATGATTTTTATTCTTGA+GGG | - | chr8.3:34539178-34539197 | None:intergenic | 20.0% |
| !!! | TTTTTTGCAAACATTATTTG+AGG | + | chr8.3:34538573-34538592 | MS.gene90917:intron | 20.0% |
| ! | AAGACATATACAAACAGAAA+CGG | - | chr8.3:34538495-34538514 | None:intergenic | 25.0% |
| ! | ACTATTCTAAATCACTATTG+AGG | + | chr8.3:34539007-34539026 | MS.gene90917:CDS | 25.0% |
| ! | AGTTCATATATTTGCTTACT+AGG | + | chr8.3:34539937-34539956 | MS.gene90917:intron | 25.0% |
| ! | ATATAGTCTGTTATCTAATG+TGG | + | chr8.3:34538793-34538812 | MS.gene90917:intron | 25.0% |
| ! | ATATATGAACTAAATGAGTC+TGG | - | chr8.3:34539928-34539947 | None:intergenic | 25.0% |
| ! | ATATATTTGCTTACTAGGTT+CGG | + | chr8.3:34539942-34539961 | MS.gene90917:intron | 25.0% |
| ! | ATCATTGCTCAAATTCAATT+TGG | + | chr8.3:34539322-34539341 | MS.gene90917:intron | 25.0% |
| ! | ATGTGACAAAAACATAAAGA+CGG | + | chr8.3:34539260-34539279 | MS.gene90917:intron | 25.0% |
| ! | ATTGAATTTGAGCAATGATA+TGG | - | chr8.3:34539321-34539340 | None:intergenic | 25.0% |
| ! | ATTGTCATGATATATGATCA+TGG | - | chr8.3:34538732-34538751 | None:intergenic | 25.0% |
| ! | CTATTCTAAATCACTATTGA+GGG | + | chr8.3:34539008-34539027 | MS.gene90917:CDS | 25.0% |
| ! | TATTCTAAATCACTATTGAG+GGG | + | chr8.3:34539009-34539028 | MS.gene90917:CDS | 25.0% |
| ! | TCTAGAAATGAAGTATATCA+GGG | + | chr8.3:34538292-34538311 | MS.gene90917:intron | 25.0% |
| ! | TGATATATGATCATGGTATT+CGG | - | chr8.3:34538725-34538744 | None:intergenic | 25.0% |
| ! | TTACAATCCATTTCTGTTAA+TGG | + | chr8.3:34538900-34538919 | MS.gene90917:intron | 25.0% |
| ! | TTCCCTTAAGAATATATTTG+AGG | - | chr8.3:34538426-34538445 | None:intergenic | 25.0% |
| ! | TTGTCAAAAGTTTCTCAATT+TGG | + | chr8.3:34539228-34539247 | MS.gene90917:intron | 25.0% |
| !! | AAAAAAGGGATTATGTTTTG+AGG | + | chr8.3:34538654-34538673 | MS.gene90917:intron | 25.0% |
| !! | AATGATTTTTATTCTTGAGG+GGG | - | chr8.3:34539176-34539195 | None:intergenic | 25.0% |
| !! | CAATGATTTTTATTCTTGAG+GGG | - | chr8.3:34539177-34539196 | None:intergenic | 25.0% |
| !! | CTTTTGTCTCAATAAGATTT+TGG | - | chr8.3:34539653-34539672 | None:intergenic | 25.0% |
| !! | TGAAAGCTGAAAAGTATAAT+TGG | + | chr8.3:34538360-34538379 | MS.gene90917:intron | 25.0% |
| !! | TGACCTAATTGAGAAATTTT+TGG | + | chr8.3:34539283-34539302 | MS.gene90917:intron | 25.0% |
| !! | TTCAATTTGAGCTTTATGAA+AGG | + | chr8.3:34540237-34540256 | MS.gene90917:CDS | 25.0% |
| !! | TTGTTTCAAAGTCTGATTTT+TGG | + | chr8.3:34538524-34538543 | MS.gene90917:intron | 25.0% |
| !!! | AAAAAGGGATTATGTTTTGA+GGG | + | chr8.3:34538655-34538674 | MS.gene90917:intron | 25.0% |
| !!! | TCTGATATGTTATTTCGTTT+GGG | + | chr8.3:34539434-34539453 | MS.gene90917:intron | 25.0% |
| !!! | TTCTGATATGTTATTTCGTT+TGG | + | chr8.3:34539433-34539452 | MS.gene90917:intron | 25.0% |
| !!! | TTGAGTTTTATCATGATCAA+GGG | - | chr8.3:34539058-34539077 | None:intergenic | 25.0% |
| AAAATGGAAATACATTCCCT+AGG | + | chr8.3:34539873-34539892 | MS.gene90917:intron | 30.0% | |
| AATTAAGAGAGAGTAATCTG+TGG | + | chr8.3:34539463-34539482 | MS.gene90917:intron | 30.0% | |
| ACAACTTCTCAAATCTTTAC+AGG | - | chr8.3:34540022-34540041 | None:intergenic | 30.0% | |
| ACGTTGACGATAAGAAAAAT+TGG | + | chr8.3:34539624-34539643 | MS.gene90917:intron | 30.0% | |
| ACTTACATGTATCAACAACT+TGG | - | chr8.3:34539384-34539403 | None:intergenic | 30.0% | |
| ATGTTGAAGATAAGTAAAGC+TGG | + | chr8.3:34539773-34539792 | MS.gene90917:intron | 30.0% | |
| ATTCTAAATCACTATTGAGG+GGG | + | chr8.3:34539010-34539029 | MS.gene90917:CDS | 30.0% | |
| CAAGTTATATGGTGAAAAGA+AGG | + | chr8.3:34538216-34538235 | MS.gene90917:CDS | 30.0% | |
| CGTTCAACAAAATCTGAAAA+CGG | - | chr8.3:34539095-34539114 | None:intergenic | 30.0% | |
| GTCTAGAAATGAAGTATATC+AGG | + | chr8.3:34538291-34538310 | MS.gene90917:intron | 30.0% | |
| GTGGAACAAATATCTCAAAT+TGG | + | chr8.3:34538812-34538831 | MS.gene90917:intron | 30.0% | |
| TATGAAAGGATAAAAGATGC+TGG | + | chr8.3:34540251-34540270 | MS.gene90917:CDS | 30.0% | |
| TATGTTAGGAATGACATAGA+TGG | + | chr8.3:34539742-34539761 | MS.gene90917:intron | 30.0% | |
| TTCCAAAGGAATATCTACAA+GGG | + | chr8.3:34538257-34538276 | MS.gene90917:CDS | 30.0% | |
| ! | AAATTCAATTTGGAACTTGC+AGG | + | chr8.3:34539332-34539351 | MS.gene90917:intron | 30.0% |
| ! | AATTGTGTGCTTTTGTTAAG+TGG | + | chr8.3:34540102-34540121 | MS.gene90917:intron | 30.0% |
| ! | AGATGAAAGTGCAATATGAT+GGG | + | chr8.3:34540180-34540199 | MS.gene90917:CDS | 30.0% |
| ! | CGTTTTCAGATTTTGTTGAA+CGG | + | chr8.3:34539093-34539112 | MS.gene90917:CDS | 30.0% |
| ! | CTTAACAAAAGCACACAATT+AGG | - | chr8.3:34540102-34540121 | None:intergenic | 30.0% |
| ! | CTTCATTTCTAGACCTATTA+TGG | - | chr8.3:34538285-34538304 | None:intergenic | 30.0% |
| ! | TTTGCTGGTTGTATTGAATA+TGG | + | chr8.3:34539571-34539590 | MS.gene90917:intron | 30.0% |
| !! | AAAAGGGATTATGTTTTGAG+GGG | + | chr8.3:34538656-34538675 | MS.gene90917:intron | 30.0% |
| !! | CTACATTGATTTGATTGTGT+AGG | + | chr8.3:34539674-34539693 | MS.gene90917:intron | 30.0% |
| !! | GTTGAGTTTTATCATGATCA+AGG | - | chr8.3:34539059-34539078 | None:intergenic | 30.0% |
| !! | TATGTTTTTGTCACATGATG+AGG | - | chr8.3:34539256-34539275 | None:intergenic | 30.0% |
| !!! | GAAATTTTTGGTAAAGACAG+AGG | + | chr8.3:34539295-34539314 | MS.gene90917:intron | 30.0% |
| AAAGGAGAAATTCCATCATC+AGG | + | chr8.3:34538148-34538167 | MS.gene90917:CDS | 35.0% | |
| ACAACCAGCAAACATGTATA+AGG | - | chr8.3:34539563-34539582 | None:intergenic | 35.0% | |
| AGAACAACTTTGAACACCAA+AGG | - | chr8.3:34538057-34538076 | None:intergenic | 35.0% | |
| ATACTTGATGCCTTGAACAA+AGG | + | chr8.3:34538130-34538149 | MS.gene90917:CDS | 35.0% | |
| CATAAGCCTTTGTGTATGTT+AGG | + | chr8.3:34539728-34539747 | MS.gene90917:intron | 35.0% | |
| CTTCCAAAGGAATATCTACA+AGG | + | chr8.3:34538256-34538275 | MS.gene90917:CDS | 35.0% | |
| GACTCATGTAGCTTGAAAAA+TGG | + | chr8.3:34539857-34539876 | MS.gene90917:intron | 35.0% | |
| GAGAGATGTCTCAAGTTATA+TGG | + | chr8.3:34538205-34538224 | MS.gene90917:CDS | 35.0% | |
| GTCATTCCTAACATACACAA+AGG | - | chr8.3:34539737-34539756 | None:intergenic | 35.0% | |
| GTGGTTGAATTTCTCAATGA+GGG | + | chr8.3:34539482-34539501 | MS.gene90917:intron | 35.0% | |
| TATATGATCATGGTATTCGG+TGG | - | chr8.3:34538722-34538741 | None:intergenic | 35.0% | |
| TCAACAACTTGGAAAACTGT+CGG | - | chr8.3:34539373-34539392 | None:intergenic | 35.0% | |
| TCCAAAGGAATATCTACAAG+GGG | + | chr8.3:34538258-34538277 | MS.gene90917:CDS | 35.0% | |
| TGGAATTTCTCCTTTGTTCA+AGG | - | chr8.3:34538143-34538162 | None:intergenic | 35.0% | |
| TGTGGTTGAATTTCTCAATG+AGG | + | chr8.3:34539481-34539500 | MS.gene90917:intron | 35.0% | |
| TTATTCTTGAGGGGGAAAAA+AGG | - | chr8.3:34539168-34539187 | None:intergenic | 35.0% | |
| TTCTCCTTATACATGTTTGC+TGG | + | chr8.3:34539556-34539575 | MS.gene90917:intron | 35.0% | |
| TTTCAAGCTACATGAGTCTA+GGG | - | chr8.3:34539855-34539874 | None:intergenic | 35.0% | |
| ! | GAGATGAAAGTGCAATATGA+TGG | + | chr8.3:34540179-34540198 | MS.gene90917:CDS | 35.0% |
| ! | TGTAGATATTCCTTTGGAAG+AGG | - | chr8.3:34538256-34538275 | None:intergenic | 35.0% |
| !! | ATGTTATTTCGTTTGGGTCA+AGG | + | chr8.3:34539440-34539459 | MS.gene90917:intron | 35.0% |
| !! | ATTGTGTAGGCTATTTCTGT+AGG | + | chr8.3:34539687-34539706 | MS.gene90917:intron | 35.0% |
| !! | GTCTGATTTTTGGATAACAG+TGG | + | chr8.3:34538534-34538553 | MS.gene90917:intron | 35.0% |
| !! | TTAGGTTGGGATTCTATATC+TGG | + | chr8.3:34538979-34538998 | MS.gene90917:CDS | 35.0% |
| !! | TTTTCAAGCTACATGAGTCT+AGG | - | chr8.3:34539856-34539875 | None:intergenic | 35.0% |
| !!! | ATTATGTTTTGAGGGGATGA+AGG | + | chr8.3:34538663-34538682 | MS.gene90917:intron | 35.0% |
| !!! | CAGATGGTTGTTTATTTTGC+AGG | + | chr8.3:34538923-34538942 | MS.gene90917:intron | 35.0% |
| ACCCCTTGTAGATATTCCTT+TGG | - | chr8.3:34538262-34538281 | None:intergenic | 40.0% | |
| AGGCTTGCATATTACCTTTC+TGG | - | chr8.3:34539148-34539167 | None:intergenic | 40.0% | |
| ATCTACAAGGGGTCCATAAT+AGG | + | chr8.3:34538269-34538288 | MS.gene90917:CDS | 40.0% | |
| ATTGAGGGGGAAAGTTATTG+AGG | + | chr8.3:34539023-34539042 | MS.gene90917:CDS | 40.0% | |
| ATTGGATCTACCTCTTCCAA+AGG | + | chr8.3:34538243-34538262 | MS.gene90917:CDS | 40.0% | |
| CCATCTGCCATTAACAGAAA+TGG | - | chr8.3:34538910-34538929 | None:intergenic | 40.0% | |
| CCATTTCTGTTAATGGCAGA+TGG | + | chr8.3:34538907-34538926 | MS.gene90917:intron | 40.0% | |
| GGAATGACATAGATGGTGTT+CGG | + | chr8.3:34539749-34539768 | MS.gene90917:intron | 40.0% | |
| TACTGTTTGTGCAGACAGTT+AGG | + | chr8.3:34538961-34538980 | MS.gene90917:intron | 40.0% | |
| TGAAGATAAGTAAAGCTGGC+TGG | + | chr8.3:34539777-34539796 | MS.gene90917:intron | 40.0% | |
| TGGTGAAAAGAAGGCAACAT+TGG | + | chr8.3:34538225-34538244 | MS.gene90917:CDS | 40.0% | |
| TTCAAGCTACATGAGTCTAG+GGG | - | chr8.3:34539854-34539873 | None:intergenic | 40.0% | |
| TTTGTGCAGACAGTTAGGTT+GGG | + | chr8.3:34538966-34538985 | MS.gene90917:intron | 40.0% | |
| ! | AAGTGCAATATGATGGGATG+TGG | + | chr8.3:34540186-34540205 | MS.gene90917:CDS | 40.0% |
| ! | AGTGCAATATGATGGGATGT+GGG | + | chr8.3:34540187-34540206 | MS.gene90917:CDS | 40.0% |
| ! | CTTGTGGAGGTTTTCAACAA+AGG | + | chr8.3:34538175-34538194 | MS.gene90917:CDS | 40.0% |
| ! | GCATATTACCTTTCTGGTGT+TGG | - | chr8.3:34539142-34539161 | None:intergenic | 40.0% |
| ! | GTGCTTTTGTTAAGTGGACA+AGG | + | chr8.3:34540108-34540127 | MS.gene90917:intron | 40.0% |
| ! | TATTTCTGTAGGATGGGGAA+TGG | + | chr8.3:34539698-34539717 | MS.gene90917:intron | 40.0% |
| !! | CGCTCAACTGGTTGATTTTA+AGG | + | chr8.3:34539988-34540007 | MS.gene90917:intron | 40.0% |
| !! | GTAGGCTATTTCTGTAGGAT+GGG | + | chr8.3:34539692-34539711 | MS.gene90917:intron | 40.0% |
| !! | TAGGCTATTTCTGTAGGATG+GGG | + | chr8.3:34539693-34539712 | MS.gene90917:intron | 40.0% |
| !! | TGTAGGCTATTTCTGTAGGA+TGG | + | chr8.3:34539691-34539710 | MS.gene90917:intron | 40.0% |
| ACAACTTGGAAAACTGTCGG+TGG | - | chr8.3:34539370-34539389 | None:intergenic | 45.0% | |
| CCCTAGGACTTATCACGATA+GGG | + | chr8.3:34539889-34539908 | MS.gene90917:intron | 45.0% | |
| CCCTATCGTGATAAGTCCTA+GGG | - | chr8.3:34539892-34539911 | None:intergenic | 45.0% | |
| GAAAACTGTCGGTGGAATCA+TGG | - | chr8.3:34539362-34539381 | None:intergenic | 45.0% | |
| GGATGAAGGTTCGTCAGTTT+CGG | + | chr8.3:34538677-34538696 | MS.gene90917:intron | 45.0% | |
| GGGGAAAGTTATTGAGGCAT+TGG | + | chr8.3:34539029-34539048 | MS.gene90917:CDS | 45.0% | |
| GTTTGTGCAGACAGTTAGGT+TGG | + | chr8.3:34538965-34538984 | MS.gene90917:intron | 45.0% | |
| TCAAGCTACATGAGTCTAGG+GGG | - | chr8.3:34539853-34539872 | None:intergenic | 45.0% | |
| TCCCTAGGACTTATCACGAT+AGG | + | chr8.3:34539888-34539907 | MS.gene90917:intron | 45.0% | |
| TCCCTATCGTGATAAGTCCT+AGG | - | chr8.3:34539893-34539912 | None:intergenic | 45.0% | |
| TTGGGATTCTATATCTGGCG+TGG | + | chr8.3:34538984-34539003 | MS.gene90917:CDS | 45.0% | |
| AACTGTCGGTGGAATCATGG+AGG | - | chr8.3:34539359-34539378 | None:intergenic | 50.0% | |
| ACATCGTGCATTCGCTCAAC+TGG | + | chr8.3:34539976-34539995 | MS.gene90917:intron | 50.0% | |
| ATCATCAGGCTCTCTTGTGG+AGG | + | chr8.3:34538162-34538181 | MS.gene90917:CDS | 50.0% | |
| GCTTTCAGCCAACACCAGAA+AGG | + | chr8.3:34539131-34539150 | MS.gene90917:CDS | 50.0% | |
| TCCACAAGAGAGCCTGATGA+TGG | - | chr8.3:34538163-34538182 | None:intergenic | 50.0% | |
| TCCATCATCAGGCTCTCTTG+TGG | + | chr8.3:34538159-34538178 | MS.gene90917:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 34538051 | 34540298 | 34538051 | ID=MS.gene90917 |
| chr8.3 | mRNA | 34538051 | 34540298 | 34538051 | ID=MS.gene90917.t1;Parent=MS.gene90917 |
| chr8.3 | exon | 34538051 | 34538059 | 34538051 | ID=MS.gene90917.t1.exon1;Parent=MS.gene90917.t1 |
| chr8.3 | CDS | 34538051 | 34538059 | 34538051 | ID=cds.MS.gene90917.t1;Parent=MS.gene90917.t1 |
| chr8.3 | exon | 34538130 | 34538290 | 34538130 | ID=MS.gene90917.t1.exon2;Parent=MS.gene90917.t1 |
| chr8.3 | CDS | 34538130 | 34538290 | 34538130 | ID=cds.MS.gene90917.t1;Parent=MS.gene90917.t1 |
| chr8.3 | exon | 34538975 | 34539152 | 34538975 | ID=MS.gene90917.t1.exon3;Parent=MS.gene90917.t1 |
| chr8.3 | CDS | 34538975 | 34539152 | 34538975 | ID=cds.MS.gene90917.t1;Parent=MS.gene90917.t1 |
| chr8.3 | exon | 34540122 | 34540298 | 34540122 | ID=MS.gene90917.t1.exon4;Parent=MS.gene90917.t1 |
| chr8.3 | CDS | 34540122 | 34540298 | 34540122 | ID=cds.MS.gene90917.t1;Parent=MS.gene90917.t1 |
| Gene Sequence |
| Protein sequence |
