Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91871.t1 | XP_013443065.1 | 99.2 | 368 | 2 | 1 | 1 | 368 | 1 | 367 | 5.50E-210 | 740 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91871.t1 | A0A072TU53 | 99.2 | 368 | 2 | 1 | 1 | 368 | 1 | 367 | 4.0e-210 | 740.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene91871 | 0.807328 | 5.33E-50 | -1.69E-46 |
| MS.gene050667 | MS.gene91871 | 0.80963 | 1.72E-50 | -1.69E-46 |
| MS.gene052169 | MS.gene91871 | 0.833872 | 4.16E-56 | -1.69E-46 |
| MS.gene052209 | MS.gene91871 | 0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene91871 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene053173 | MS.gene91871 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene91871 | 0.804538 | 2.06E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene91871 | 0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene054941 | MS.gene91871 | 0.827046 | 1.94E-54 | -1.69E-46 |
| MS.gene05652 | MS.gene91871 | 0.864172 | 1.47E-64 | -1.69E-46 |
| MS.gene057367 | MS.gene91871 | 0.850474 | 1.66E-60 | -1.69E-46 |
| MS.gene057669 | MS.gene91871 | 0.833166 | 6.23E-56 | -1.69E-46 |
| MS.gene057990 | MS.gene91871 | 0.81753 | 3.14E-52 | -1.69E-46 |
| MS.gene058382 | MS.gene91871 | 0.802156 | 6.41E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene91871 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene91871 | 0.805438 | 1.33E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene91871 | 0.815281 | 1.00E-51 | -1.69E-46 |
| MS.gene060985 | MS.gene91871 | 0.827883 | 1.22E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51556 | MS.gene91871 | PPI |
| MS.gene015971 | MS.gene91871 | PPI |
| MS.gene60267 | MS.gene91871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91871.t1 | MTR_0045s0110 | 99.185 | 368 | 2 | 1 | 1 | 368 | 1 | 367 | 0.0 | 744 |
| MS.gene91871.t1 | MTR_4g039720 | 78.804 | 368 | 78 | 0 | 1 | 368 | 4 | 371 | 0.0 | 627 |
| MS.gene91871.t1 | MTR_4g039680 | 80.707 | 368 | 70 | 1 | 1 | 368 | 1 | 367 | 0.0 | 622 |
| MS.gene91871.t1 | MTR_4g039740 | 78.533 | 368 | 78 | 1 | 1 | 368 | 1 | 367 | 0.0 | 617 |
| MS.gene91871.t1 | MTR_1g011800 | 56.024 | 332 | 144 | 2 | 33 | 362 | 37 | 368 | 6.70e-133 | 385 |
| MS.gene91871.t1 | MTR_2g103170 | 50.298 | 336 | 161 | 2 | 33 | 362 | 26 | 361 | 6.19e-119 | 349 |
| MS.gene91871.t1 | MTR_2g019600 | 43.243 | 333 | 188 | 1 | 33 | 364 | 33 | 365 | 1.45e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91871.t1 | AT3G08030 | 68.103 | 348 | 110 | 1 | 22 | 368 | 18 | 365 | 3.86e-177 | 496 |
| MS.gene91871.t1 | AT3G08030 | 69.350 | 323 | 98 | 1 | 47 | 368 | 1 | 323 | 2.43e-168 | 473 |
| MS.gene91871.t1 | AT2G41800 | 61.671 | 347 | 129 | 3 | 23 | 365 | 21 | 367 | 1.18e-154 | 440 |
| MS.gene91871.t1 | AT2G41810 | 58.743 | 366 | 147 | 3 | 3 | 364 | 1 | 366 | 4.06e-152 | 433 |
| MS.gene91871.t1 | AT5G25460 | 54.213 | 356 | 160 | 2 | 8 | 362 | 8 | 361 | 1.08e-140 | 404 |
| MS.gene91871.t1 | AT5G11420 | 55.891 | 331 | 145 | 1 | 33 | 362 | 28 | 358 | 4.44e-139 | 400 |
| MS.gene91871.t1 | AT4G32460 | 52.676 | 355 | 160 | 2 | 9 | 362 | 10 | 357 | 2.11e-134 | 388 |
| MS.gene91871.t1 | AT4G32460 | 52.676 | 355 | 160 | 2 | 9 | 362 | 10 | 357 | 2.11e-134 | 388 |
| MS.gene91871.t1 | AT4G32460 | 55.521 | 317 | 140 | 1 | 47 | 362 | 1 | 317 | 2.24e-130 | 376 |
| MS.gene91871.t1 | AT4G32460 | 55.521 | 317 | 140 | 1 | 47 | 362 | 1 | 317 | 2.24e-130 | 376 |
| MS.gene91871.t1 | AT1G80240 | 52.266 | 331 | 157 | 1 | 33 | 362 | 30 | 360 | 2.37e-121 | 355 |
| MS.gene91871.t1 | AT1G29980 | 41.547 | 349 | 194 | 2 | 26 | 364 | 34 | 382 | 1.07e-93 | 286 |
| MS.gene91871.t1 | AT1G29980 | 42.353 | 340 | 186 | 2 | 35 | 364 | 7 | 346 | 1.32e-93 | 285 |
| MS.gene91871.t1 | AT2G34510 | 42.857 | 336 | 186 | 2 | 35 | 364 | 43 | 378 | 1.97e-93 | 285 |
| MS.gene91871.t1 | AT2G34510 | 44.863 | 292 | 155 | 2 | 79 | 364 | 1 | 292 | 2.25e-85 | 261 |
| MS.gene91871.t1 | AT5G14150 | 28.451 | 355 | 221 | 11 | 32 | 368 | 22 | 361 | 8.94e-31 | 120 |
| MS.gene91871.t1 | AT5G14150 | 28.451 | 355 | 221 | 11 | 32 | 368 | 22 | 361 | 8.94e-31 | 120 |
Find 83 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTGGTTGAGTTGAAAAT+TGG | 0.165055 | 3.2:+21752574 | None:intergenic |
| TTGGTATTCTTTAGGTCTTT+AGG | 0.165937 | 3.2:+21754078 | None:intergenic |
| CCCTTCCCTTCGGATTTAAA+TGG | 0.190979 | 3.2:+21752268 | None:intergenic |
| CAACTCTATGCTTTAATTCT+TGG | 0.196335 | 3.2:-21753886 | MS.gene91871:CDS |
| TGGTATTCTTTAGGTCTTTA+GGG | 0.221241 | 3.2:+21754079 | None:intergenic |
| AAACCATTGATTTCCCATTT+TGG | 0.221713 | 3.2:+21754033 | None:intergenic |
| TTTGCAGTTTATCTTCAAAA+TGG | 0.237288 | 3.2:-21754123 | MS.gene91871:intron |
| TTCAATTTCTCAAACAATTA+AGG | 0.237533 | 3.2:-21753920 | MS.gene91871:CDS |
| GTGTTACCTTCTGGTATTCT+AGG | 0.242497 | 3.2:+21755204 | None:intergenic |
| CAATGAGCTTGGTATTCTTT+AGG | 0.255171 | 3.2:+21754070 | None:intergenic |
| ATGGTCTATTGCAGTTAATT+TGG | 0.269737 | 3.2:-21752629 | MS.gene91871:intron |
| TTCTTTAGGTCTTTAGGGTT+TGG | 0.285094 | 3.2:+21754084 | None:intergenic |
| CATACAAGAATCGATGATTA+TGG | 0.329909 | 3.2:-21752169 | MS.gene91871:CDS |
| CTGTGGTCCTGTTCTTGATC+AGG | 0.368709 | 3.2:-21752140 | MS.gene91871:CDS |
| CGTTGGTTGAGTTGAAAATT+GGG | 0.369942 | 3.2:+21752575 | None:intergenic |
| GGAGCAGTCGAGCTTGTTGC+CGG | 0.370727 | 3.2:-21752433 | MS.gene91871:CDS |
| TATGTTTCATTACCTCTTGT+AGG | 0.391188 | 3.2:+21753631 | None:intergenic |
| TGCAATGGCGCTTTCTCTGC+CGG | 0.406086 | 3.2:+21752414 | None:intergenic |
| TTCAATGTCCCATTCGGACT+TGG | 0.408118 | 3.2:-21752454 | MS.gene91871:CDS |
| TCATTACCTCTTGTAGGCAT+TGG | 0.412756 | 3.2:+21753637 | None:intergenic |
| CTAAAGAATACCAAGCTCAT+TGG | 0.415170 | 3.2:-21754069 | MS.gene91871:CDS |
| TCTTCAAAATGGAAACTTTG+AGG | 0.422549 | 3.2:-21754112 | MS.gene91871:CDS |
| ATCTCTGTGCCACCACAAAC+TGG | 0.431643 | 3.2:-21753826 | MS.gene91871:CDS |
| CAAACATTGTATAGTCTCAA+TGG | 0.435698 | 3.2:-21753790 | MS.gene91871:CDS |
| AAAATGGGAAATCAATGGTT+TGG | 0.448163 | 3.2:-21754031 | MS.gene91871:CDS |
| CTTTAATTCTTGGTGCATCA+AGG | 0.450617 | 3.2:-21753876 | MS.gene91871:CDS |
| TTACCTCTTGTAGGCATTGG+AGG | 0.453519 | 3.2:+21753640 | None:intergenic |
| CAAATTCATATTTAAGCCAC+AGG | 0.459329 | 3.2:+21752106 | None:intergenic |
| TATGAATTTACCCTTCCCTT+CGG | 0.469027 | 3.2:+21752258 | None:intergenic |
| CTACCAAAATGGGAAATCAA+TGG | 0.469575 | 3.2:-21754036 | MS.gene91871:CDS |
| AAGCATTTCAATGTCCCATT+CGG | 0.485220 | 3.2:-21752460 | MS.gene91871:CDS |
| AAAGTTCCATTTAAATCCGA+AGG | 0.489665 | 3.2:-21752274 | MS.gene91871:CDS |
| ACTATAACCTGATCAAGAAC+AGG | 0.503775 | 3.2:+21752133 | None:intergenic |
| TCCATTTAAATCCGAAGGGA+AGG | 0.505472 | 3.2:-21752269 | MS.gene91871:CDS |
| AGAGATCTTCTTGTTGTGGT+GGG | 0.513960 | 3.2:+21752542 | None:intergenic |
| TCTACTCACCACTCCCTGGT+TGG | 0.515615 | 3.2:-21752522 | MS.gene91871:CDS |
| CGACTGCTCCAAGTCCGAAT+GGG | 0.519844 | 3.2:+21752446 | None:intergenic |
| GTTGAGTTGAAAATTGGGAA+TGG | 0.524305 | 3.2:+21752580 | None:intergenic |
| AATGGACCCTCTTCAAAGCT+AGG | 0.531679 | 3.2:+21752598 | None:intergenic |
| ATTAAAGCATAGAGTTGACC+AGG | 0.539744 | 3.2:+21753892 | None:intergenic |
| GTGACTGGTGGTCCTCAACC+AGG | 0.542126 | 3.2:-21754000 | MS.gene91871:CDS |
| TAGAGATCTTCTTGTTGTGG+TGG | 0.543583 | 3.2:+21752541 | None:intergenic |
| TCGACTGCTCCAAGTCCGAA+TGG | 0.550994 | 3.2:+21752445 | None:intergenic |
| CAATGGTGATGTTATTGCAT+GGG | 0.551959 | 3.2:-21753773 | MS.gene91871:CDS |
| CAAACAATTAAGGTCAAACC+TGG | 0.553729 | 3.2:-21753910 | MS.gene91871:CDS |
| TACAAGATCACATTCTCAGT+TGG | 0.553917 | 3.2:-21752361 | MS.gene91871:CDS |
| GAAAAGAGAGACACCGCCAT+TGG | 0.555042 | 3.2:+21755282 | None:intergenic |
| AAAGGAACATCACCAGTTTG+TGG | 0.558532 | 3.2:+21753814 | None:intergenic |
| GAGTAGAGATCTTCTTGTTG+TGG | 0.568431 | 3.2:+21752538 | None:intergenic |
| TAGAATGTGAGTCTAGTCCT+TGG | 0.569730 | 3.2:+21752205 | None:intergenic |
| CCATTTAAATCCGAAGGGAA+GGG | 0.572389 | 3.2:-21752268 | MS.gene91871:CDS |
| TGTTCTGAGAATTTGTGCAA+TGG | 0.574231 | 3.2:+21752399 | None:intergenic |
| TACCCTCCAATGCCTACAAG+AGG | 0.574344 | 3.2:-21753643 | MS.gene91871:intron |
| GTAGGATCTTCTTGAACACC+AGG | 0.574842 | 3.2:+21753706 | None:intergenic |
| AGCTTTAAACTTGAAACTCA+CGG | 0.576730 | 3.2:+21752234 | None:intergenic |
| AGACTATACAATGTTTGCAA+AGG | 0.576811 | 3.2:+21753796 | None:intergenic |
| GGAACACATGCTGTGAGGCT+AGG | 0.578100 | 3.2:-21753952 | MS.gene91871:CDS |
| GCATGTGTTCCATGAGTCAC+CGG | 0.580993 | 3.2:+21753964 | None:intergenic |
| GATCTCTACTCACCACTCCC+TGG | 0.582407 | 3.2:-21752526 | MS.gene91871:CDS |
| TCGATGATCCAACCAGGGAG+TGG | 0.586201 | 3.2:+21752514 | None:intergenic |
| TACCTCTTGTAGGCATTGGA+GGG | 0.588583 | 3.2:+21753641 | None:intergenic |
| ATAGCAATTGCATCAAGAAG+TGG | 0.589206 | 3.2:+21753676 | None:intergenic |
| TCAAGAAGTGGACCACAAGT+AGG | 0.610501 | 3.2:+21753688 | None:intergenic |
| AAGTTCCATTTAAATCCGAA+GGG | 0.616315 | 3.2:-21752273 | MS.gene91871:CDS |
| AGAGACTCGATGATCCAACC+AGG | 0.627050 | 3.2:+21752508 | None:intergenic |
| GATGATTATGGCTCTCTCTG+TGG | 0.637773 | 3.2:-21752157 | MS.gene91871:CDS |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 3.2:-21752326 | MS.gene91871:CDS |
| GTTCAAGAAGATCCTACTTG+TGG | 0.647438 | 3.2:-21753700 | MS.gene91871:CDS |
| AATGGTGATGTTATTGCATG+GGG | 0.650399 | 3.2:-21753772 | MS.gene91871:CDS |
| AGTTTAAAGCTATCGCACCA+AGG | 0.662461 | 3.2:-21752222 | MS.gene91871:CDS |
| GGTTTGGTAGAGTATGTGAC+TGG | 0.663787 | 3.2:-21754015 | MS.gene91871:CDS |
| TTGGTAGAGTATGTGACTGG+TGG | 0.665537 | 3.2:-21754012 | MS.gene91871:CDS |
| CTTCAGCCTAGAATACCAGA+AGG | 0.676116 | 3.2:-21755210 | MS.gene91871:intron |
| AAATTCATATTTAAGCCACA+GGG | 0.678492 | 3.2:+21752107 | None:intergenic |
| TCAATGGTGATGTTATTGCA+TGG | 0.678740 | 3.2:-21753774 | MS.gene91871:CDS |
| GGAACATCACCAGTTTGTGG+TGG | 0.691615 | 3.2:+21753817 | None:intergenic |
| TCAGGTTATAGTGTCCCCTG+TGG | 0.698590 | 3.2:-21752122 | MS.gene91871:CDS |
| TAGGATCTTCTTGAACACCA+GGG | 0.704341 | 3.2:+21753707 | None:intergenic |
| TGGTGGGAGTAAAACACCGT+TGG | 0.711037 | 3.2:+21752558 | None:intergenic |
| CTCATGGAACACATGCTGTG+AGG | 0.712106 | 3.2:-21753957 | MS.gene91871:CDS |
| AATTCATATTTAAGCCACAG+GGG | 0.736491 | 3.2:+21752108 | None:intergenic |
| ACTGGTGGTCCTCAACCAGG+AGG | 0.747255 | 3.2:-21753997 | MS.gene91871:CDS |
| GAGACTCGATGATCCAACCA+GGG | 0.750509 | 3.2:+21752509 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATACCAAAATGAAA+GGG | + | chr3.2:21752230-21752249 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATACTTTGATG+TGG | - | chr3.2:21752609-21752628 | MS.gene91871:CDS | 15.0% |
| !! | AAAAATCTTATACTAACTGA+TGG | - | chr3.2:21754180-21754199 | MS.gene91871:intron | 20.0% |
| !! | ACCAAAAAAATGAATTGAAA+AGG | - | chr3.2:21754371-21754390 | MS.gene91871:intron | 20.0% |
| !! | CAAAAAAATGAATTGAAAAG+GGG | - | chr3.2:21754373-21754392 | MS.gene91871:intron | 20.0% |
| !! | CCAAAAAAATGAATTGAAAA+GGG | - | chr3.2:21754372-21754391 | MS.gene91871:intron | 20.0% |
| !! | GTTATATATACCAAAATGAA+AGG | + | chr3.2:21752231-21752250 | None:intergenic | 20.0% |
| !! | TCATTTCTTGTAAAAAATTG+TGG | - | chr3.2:21752654-21752673 | MS.gene91871:intron | 20.0% |
| !! | TTATTCTCTCAAATTACTAT+CGG | + | chr3.2:21753017-21753036 | None:intergenic | 20.0% |
| !! | TTCAATTTCTCAAACAATTA+AGG | - | chr3.2:21753476-21753495 | MS.gene91871:intron | 20.0% |
| !!! | ACTTGATAAGAACTTTTTTT+TGG | - | chr3.2:21754127-21754146 | MS.gene91871:intron | 20.0% |
| !!! | ATAATCATTAATGGCTTTAT+CGG | + | chr3.2:21754749-21754768 | None:intergenic | 20.0% |
| !!! | ATCGACTTCAAATATTTATT+TGG | - | chr3.2:21754416-21754435 | MS.gene91871:intron | 20.0% |
| !!! | ATTAATGAATTTTCAGATGA+AGG | - | chr3.2:21754251-21754270 | MS.gene91871:intron | 20.0% |
| !!! | ATTTGTTAGTACTTTTTATG+AGG | - | chr3.2:21752783-21752802 | MS.gene91871:intron | 20.0% |
| ! | AAAACAACTCATCTAAATGA+AGG | + | chr3.2:21752545-21752564 | None:intergenic | 25.0% |
| ! | AAAAGTTAGCTCAAAAGATA+AGG | + | chr3.2:21752387-21752406 | None:intergenic | 25.0% |
| ! | AGTATTTAACAAAACTGATG+TGG | + | chr3.2:21753792-21753811 | None:intergenic | 25.0% |
| ! | ATCTATGTAATCATATGTGT+CGG | - | chr3.2:21753039-21753058 | MS.gene91871:intron | 25.0% |
| ! | ATGGTTACATTCAATCATTT+CGG | + | chr3.2:21754618-21754637 | None:intergenic | 25.0% |
| ! | ATGTCAAATAGTAACTATAG+TGG | - | chr3.2:21754004-21754023 | MS.gene91871:CDS | 25.0% |
| ! | CAATAGACCATAATCATTAA+TGG | + | chr3.2:21754758-21754777 | None:intergenic | 25.0% |
| ! | GATAAAGCCATTAATGATTA+TGG | - | chr3.2:21754748-21754767 | MS.gene91871:intron | 25.0% |
| ! | GCAAAAAAACATACATTTGA+GGG | + | chr3.2:21754443-21754462 | None:intergenic | 25.0% |
| ! | TCTACATAATTGAACTTAAC+AGG | - | chr3.2:21754103-21754122 | MS.gene91871:CDS | 25.0% |
| ! | TGAACAAAGTTTCAATTTCT+TGG | - | chr3.2:21752844-21752863 | MS.gene91871:intron | 25.0% |
| ! | TGCAAAAAAACATACATTTG+AGG | + | chr3.2:21754444-21754463 | None:intergenic | 25.0% |
| ! | TTATTTGTTTCACATTGTTC+AGG | - | chr3.2:21752323-21752342 | MS.gene91871:CDS | 25.0% |
| ! | TTTGCAGTTTATCTTCAAAA+TGG | - | chr3.2:21753273-21753292 | MS.gene91871:intron | 25.0% |
| !! | AAAATTTTCCCTACCAAAAT+GGG | - | chr3.2:21753350-21753369 | MS.gene91871:intron | 25.0% |
| !! | TATGATCTTAGCATTTCTTT+TGG | - | chr3.2:21754695-21754714 | MS.gene91871:intron | 25.0% |
| !!! | CCCTTTTCAATTCATTTTTT+TGG | + | chr3.2:21754375-21754394 | None:intergenic | 25.0% |
| AAAATGGGAAATCAATGGTT+TGG | - | chr3.2:21753365-21753384 | MS.gene91871:intron | 30.0% | |
| AAAGTTCCATTTAAATCCGA+AGG | - | chr3.2:21755122-21755141 | MS.gene91871:intron | 30.0% | |
| AACAGACAATACTTCAACAA+AGG | + | chr3.2:21752947-21752966 | None:intergenic | 30.0% | |
| AAGTTCCATTTAAATCCGAA+GGG | - | chr3.2:21755123-21755142 | MS.gene91871:intron | 30.0% | |
| ACAAGCACTAAATAGCATAT+TGG | + | chr3.2:21753856-21753875 | None:intergenic | 30.0% | |
| ACAGACAATACTTCAACAAA+GGG | + | chr3.2:21752946-21752965 | None:intergenic | 30.0% | |
| AGACTATACAATGTTTGCAA+AGG | + | chr3.2:21753603-21753622 | None:intergenic | 30.0% | |
| ATATGATAGACCAAAGAACA+TGG | + | chr3.2:21754283-21754302 | None:intergenic | 30.0% | |
| ATGGTCTATTGCAGTTAATT+TGG | - | chr3.2:21754767-21754786 | MS.gene91871:intron | 30.0% | |
| ATTTATGGTGAAGTTTGAGT+GGG | - | chr3.2:21752695-21752714 | MS.gene91871:intron | 30.0% | |
| CAAACATTGTATAGTCTCAA+TGG | - | chr3.2:21753606-21753625 | MS.gene91871:intron | 30.0% | |
| CAACTCTATGCTTTAATTCT+TGG | - | chr3.2:21753510-21753529 | MS.gene91871:intron | 30.0% | |
| CATACAAGAATCGATGATTA+TGG | - | chr3.2:21755227-21755246 | MS.gene91871:CDS | 30.0% | |
| CTATTTAGTAATTCCCTTGA+AGG | - | chr3.2:21754533-21754552 | MS.gene91871:intron | 30.0% | |
| GATAAACTGCAAAGATAAGA+AGG | + | chr3.2:21753266-21753285 | None:intergenic | 30.0% | |
| TATGTTTCATTACCTCTTGT+AGG | + | chr3.2:21753768-21753787 | None:intergenic | 30.0% | |
| TCTTCAAAATGGAAACTTTG+AGG | - | chr3.2:21753284-21753303 | MS.gene91871:intron | 30.0% | |
| TGGTATTCTTTAGGTCTTTA+GGG | + | chr3.2:21753320-21753339 | None:intergenic | 30.0% | |
| TTAGTGCTTGTTTGATATCA+TGG | - | chr3.2:21753865-21753884 | MS.gene91871:CDS | 30.0% | |
| TTATACTTTGATGTGGTTGT+TGG | - | chr3.2:21752616-21752635 | MS.gene91871:CDS | 30.0% | |
| TTGGTATTCTTTAGGTCTTT+AGG | + | chr3.2:21753321-21753340 | None:intergenic | 30.0% | |
| ! | ACAAATTTAGGGTCTCAAAT+AGG | + | chr3.2:21752918-21752937 | None:intergenic | 30.0% |
| ! | ATCCATTGTTCGATACATTT+TGG | - | chr3.2:21752465-21752484 | MS.gene91871:CDS | 30.0% |
| ! | GAAAATTTTCCCTACCAAAA+TGG | - | chr3.2:21753349-21753368 | MS.gene91871:intron | 30.0% |
| ! | TATATGTGCTTTGTAGGTTT+TGG | - | chr3.2:21753122-21753141 | MS.gene91871:intron | 30.0% |
| ! | TCTAAATGAAGGTACATGAA+AGG | + | chr3.2:21752534-21752553 | None:intergenic | 30.0% |
| !! | AAAAATCCTAGCTTTGAAGA+GGG | - | chr3.2:21754792-21754811 | MS.gene91871:intron | 30.0% |
| !! | AAAAGAGTTGCGCTTTTTAA+TGG | - | chr3.2:21754484-21754503 | MS.gene91871:intron | 30.0% |
| !! | AGCTTTAAACTTGAAACTCA+CGG | + | chr3.2:21755165-21755184 | None:intergenic | 30.0% |
| !! | ATTGATTTCCCATTTTGGTA+GGG | + | chr3.2:21753361-21753380 | None:intergenic | 30.0% |
| !! | CATCTAAAACCCTTTCATTT+TGG | - | chr3.2:21752218-21752237 | MS.gene91871:CDS | 30.0% |
| !! | GCTTTAAGATCTGTCATTTA+TGG | - | chr3.2:21752680-21752699 | MS.gene91871:intron | 30.0% |
| !! | TGCTTTTTAACCAAGGAAAA+AGG | + | chr3.2:21753166-21753185 | None:intergenic | 30.0% |
| !! | TTGCTAACGTTTCTTTTTCA+TGG | - | chr3.2:21754347-21754366 | MS.gene91871:intron | 30.0% |
| !!! | AAACCATTGATTTCCCATTT+TGG | + | chr3.2:21753366-21753385 | None:intergenic | 30.0% |
| AAGCATTTCAATGTCCCATT+CGG | - | chr3.2:21754936-21754955 | MS.gene91871:intron | 35.0% | |
| AAGGATCCAATATCCTTCAA+GGG | + | chr3.2:21754549-21754568 | None:intergenic | 35.0% | |
| ACTATAACCTGATCAAGAAC+AGG | + | chr3.2:21755266-21755285 | None:intergenic | 35.0% | |
| ATAGCAATTGCATCAAGAAG+TGG | + | chr3.2:21753723-21753742 | None:intergenic | 35.0% | |
| ATGTAGAATCCTAGAAGTGA+AGG | + | chr3.2:21754090-21754109 | None:intergenic | 35.0% | |
| ATTAAAGCATAGAGTTGACC+AGG | + | chr3.2:21753507-21753526 | None:intergenic | 35.0% | |
| CAAACAATTAAGGTCAAACC+TGG | - | chr3.2:21753486-21753505 | MS.gene91871:intron | 35.0% | |
| CAATGAGCTTGGTATTCTTT+AGG | + | chr3.2:21753329-21753348 | None:intergenic | 35.0% | |
| CAGACAATACTTCAACAAAG+GGG | + | chr3.2:21752945-21752964 | None:intergenic | 35.0% | |
| CATTTATGGTGAAGTTTGAG+TGG | - | chr3.2:21752694-21752713 | MS.gene91871:intron | 35.0% | |
| CTAAAGAATACCAAGCTCAT+TGG | - | chr3.2:21753327-21753346 | MS.gene91871:intron | 35.0% | |
| CTACCAAAATGGGAAATCAA+TGG | - | chr3.2:21753360-21753379 | MS.gene91871:intron | 35.0% | |
| GACCAAAATGTATCGAACAA+TGG | + | chr3.2:21752470-21752489 | None:intergenic | 35.0% | |
| GATTGAATGTAACCATGTGT+TGG | - | chr3.2:21754622-21754641 | MS.gene91871:intron | 35.0% | |
| GTAATTCCCTTGAAGGATAT+TGG | - | chr3.2:21754540-21754559 | MS.gene91871:intron | 35.0% | |
| TAAGGATCCAATATCCTTCA+AGG | + | chr3.2:21754550-21754569 | None:intergenic | 35.0% | |
| TACAAAGCACATATACTCAG+CGG | + | chr3.2:21753117-21753136 | None:intergenic | 35.0% | |
| TACAAGATCACATTCTCAGT+TGG | - | chr3.2:21755035-21755054 | MS.gene91871:intron | 35.0% | |
| TATGAATTTACCCTTCCCTT+CGG | + | chr3.2:21755141-21755160 | None:intergenic | 35.0% | |
| TGTAGAATCCTAGAAGTGAA+GGG | + | chr3.2:21754089-21754108 | None:intergenic | 35.0% | |
| TTGTAGCTTCGACAAAATCA+TGG | - | chr3.2:21753923-21753942 | MS.gene91871:CDS | 35.0% | |
| ! | AAAGGGGTGCAACAAATTTA+GGG | + | chr3.2:21752929-21752948 | None:intergenic | 35.0% |
| ! | AAAGTGACTTTTCATAACCC+TGG | - | chr3.2:21753672-21753691 | MS.gene91871:CDS | 35.0% |
| ! | AAGGTTGTTTCCATGTTCTT+TGG | - | chr3.2:21754270-21754289 | MS.gene91871:intron | 35.0% |
| ! | AATGGTGATGTTATTGCATG+GGG | - | chr3.2:21753624-21753643 | MS.gene91871:intron | 35.0% |
| ! | CAATGGTGATGTTATTGCAT+GGG | - | chr3.2:21753623-21753642 | MS.gene91871:intron | 35.0% |
| ! | CCAATTTTCAACTCAACCAA+CGG | - | chr3.2:21754822-21754841 | MS.gene91871:intron | 35.0% |
| ! | CTTTAATTCTTGGTGCATCA+AGG | - | chr3.2:21753520-21753539 | MS.gene91871:intron | 35.0% |
| ! | GAACAAGATCTGAAGTTGTT+TGG | - | chr3.2:21753225-21753244 | MS.gene91871:intron | 35.0% |
| ! | GGAAAATTTTCCAATGAGCT+TGG | + | chr3.2:21753340-21753359 | None:intergenic | 35.0% |
| ! | TCAATGGTGATGTTATTGCA+TGG | - | chr3.2:21753622-21753641 | MS.gene91871:intron | 35.0% |
| ! | TGAAAAGGGGAGTATGTATT+TGG | - | chr3.2:21754386-21754405 | MS.gene91871:intron | 35.0% |
| ! | TTTTGTAGCACTAACACTTC+AGG | + | chr3.2:21754675-21754694 | None:intergenic | 35.0% |
| !! | CGTTGGTTGAGTTGAAAATT+GGG | + | chr3.2:21754824-21754843 | None:intergenic | 35.0% |
| !! | GAAAAATCCTAGCTTTGAAG+AGG | - | chr3.2:21754791-21754810 | MS.gene91871:intron | 35.0% |
| !! | GCAACTCTTTTAAGTGTGTT+TGG | + | chr3.2:21754475-21754494 | None:intergenic | 35.0% |
| !! | GTTGAGTTGAAAATTGGGAA+TGG | + | chr3.2:21754819-21754838 | None:intergenic | 35.0% |
| !! | TGTTCTGAGAATTTGTGCAA+TGG | + | chr3.2:21755000-21755019 | None:intergenic | 35.0% |
| !! | TTCTTTAGGTCTTTAGGGTT+TGG | + | chr3.2:21753315-21753334 | None:intergenic | 35.0% |
| !!! | CATTGATTTCCCATTTTGGT+AGG | + | chr3.2:21753362-21753381 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGTTTG+TGG | + | chr3.2:21753585-21753604 | None:intergenic | 40.0% | |
| CAACCTTGGTTGAAGAGAAT+GGG | - | chr3.2:21753184-21753203 | MS.gene91871:intron | 40.0% | |
| CACATAACACACCTAAGTAG+TGG | + | chr3.2:21754219-21754238 | None:intergenic | 40.0% | |
| CACTACTTAGGTGTGTTATG+TGG | - | chr3.2:21754217-21754236 | MS.gene91871:intron | 40.0% | |
| CCATTTAAATCCGAAGGGAA+GGG | - | chr3.2:21755128-21755147 | MS.gene91871:intron | 40.0% | |
| CCTTGGTTAAAAAGCAACCT+TGG | - | chr3.2:21753170-21753189 | MS.gene91871:intron | 40.0% | |
| CTATCAGTTCTCCACTACTT+AGG | - | chr3.2:21754205-21754224 | MS.gene91871:intron | 40.0% | |
| GAGTAGAGATCTTCTTGTTG+TGG | + | chr3.2:21754861-21754880 | None:intergenic | 40.0% | |
| GATCCTTACCTATGAAGCAT+AGG | - | chr3.2:21754562-21754581 | MS.gene91871:intron | 40.0% | |
| GCTGAGTATATGTGCTTTGT+AGG | - | chr3.2:21753116-21753135 | MS.gene91871:intron | 40.0% | |
| GTGTTACCTTCTGGTATTCT+AGG | + | chr3.2:21752195-21752214 | None:intergenic | 40.0% | |
| GTTCAAGAAGATCCTACTTG+TGG | - | chr3.2:21753696-21753715 | MS.gene91871:CDS | 40.0% | |
| GTTTCACATTGTTCAGGTGT+CGG | - | chr3.2:21752329-21752348 | MS.gene91871:CDS | 40.0% | |
| TAGAATGTGAGTCTAGTCCT+TGG | + | chr3.2:21755194-21755213 | None:intergenic | 40.0% | |
| TAGATGTGTGTGTTACCTTC+TGG | + | chr3.2:21752204-21752223 | None:intergenic | 40.0% | |
| TAGCTTCGACAAAATCATGG+TGG | - | chr3.2:21753926-21753945 | MS.gene91871:CDS | 40.0% | |
| TAGGATCTTCTTGAACACCA+GGG | + | chr3.2:21753692-21753711 | None:intergenic | 40.0% | |
| TCATTACCTCTTGTAGGCAT+TGG | + | chr3.2:21753762-21753781 | None:intergenic | 40.0% | |
| TCCATTTAAATCCGAAGGGA+AGG | - | chr3.2:21755127-21755146 | MS.gene91871:intron | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | - | chr3.2:21755070-21755089 | MS.gene91871:intron | 40.0% | |
| TGTATGTGCCTATGCTTCAT+AGG | + | chr3.2:21754573-21754592 | None:intergenic | 40.0% | |
| ! | AAGGGGAGTATGTATTTGGT+TGG | - | chr3.2:21754390-21754409 | MS.gene91871:intron | 40.0% |
| ! | AGAGATCTTCTTGTTGTGGT+GGG | + | chr3.2:21754857-21754876 | None:intergenic | 40.0% |
| ! | AGTCTTTACGCCTTTTTCCT+TGG | - | chr3.2:21753153-21753172 | MS.gene91871:intron | 40.0% |
| ! | AGTTTAAAGCTATCGCACCA+AGG | - | chr3.2:21755174-21755193 | MS.gene91871:intron | 40.0% |
| ! | CAAAGGGGTGCAACAAATTT+AGG | + | chr3.2:21752930-21752949 | None:intergenic | 40.0% |
| ! | GGTTGTTGGAGTCACTTTAT+GGG | - | chr3.2:21752630-21752649 | MS.gene91871:intron | 40.0% |
| ! | TAGAGATCTTCTTGTTGTGG+TGG | + | chr3.2:21754858-21754877 | None:intergenic | 40.0% |
| ! | TGGTTGTTGGAGTCACTTTA+TGG | - | chr3.2:21752629-21752648 | MS.gene91871:intron | 40.0% |
| !! | CACATATACTCAGCGGATTA+GGG | + | chr3.2:21753110-21753129 | None:intergenic | 40.0% |
| !! | CCGTTGGTTGAGTTGAAAAT+TGG | + | chr3.2:21754825-21754844 | None:intergenic | 40.0% |
| !!! | ATGTTTTTTCCGGTGACTCA+TGG | - | chr3.2:21753423-21753442 | MS.gene91871:intron | 40.0% |
| !!! | CCAAGGTTGCTTTTTAACCA+AGG | + | chr3.2:21753173-21753192 | None:intergenic | 40.0% |
| AAAAACATGCCTCCTGGTTG+AGG | + | chr3.2:21753411-21753430 | None:intergenic | 45.0% | |
| AATGGACCCTCTTCAAAGCT+AGG | + | chr3.2:21754801-21754820 | None:intergenic | 45.0% | |
| ATAGGCATGGTATGTGCATC+AGG | + | chr3.2:21754065-21754084 | None:intergenic | 45.0% | |
| CAAGTGTGTGTCCTGTATCA+CGG | + | chr3.2:21753974-21753993 | None:intergenic | 45.0% | |
| CATGATATCTATCCGACACC+AGG | - | chr3.2:21753081-21753100 | MS.gene91871:intron | 45.0% | |
| CCCTTCCCTTCGGATTTAAA+TGG | + | chr3.2:21755131-21755150 | None:intergenic | 45.0% | |
| CTTCAGCCTAGAATACCAGA+AGG | - | chr3.2:21752186-21752205 | MS.gene91871:CDS | 45.0% | |
| GAAGAGAATGGGAGACTTTC+TGG | - | chr3.2:21753195-21753214 | MS.gene91871:intron | 45.0% | |
| GACGCGAAAAATGGTTGTCA+TGG | - | chr3.2:21755059-21755078 | MS.gene91871:intron | 45.0% | |
| GATGATTATGGCTCTCTCTG+TGG | - | chr3.2:21755239-21755258 | MS.gene91871:CDS | 45.0% | |
| GATGGAGTAGATACTGTGCT+TGG | - | chr3.2:21752725-21752744 | MS.gene91871:intron | 45.0% | |
| GCAACCTTGGTTGAAGAGAA+TGG | - | chr3.2:21753183-21753202 | MS.gene91871:intron | 45.0% | |
| GTAGGATCTTCTTGAACACC+AGG | + | chr3.2:21753693-21753712 | None:intergenic | 45.0% | |
| GTGCCTATGCTTCATAGGTA+AGG | + | chr3.2:21754568-21754587 | None:intergenic | 45.0% | |
| GTTTGAGTGGGTAAGCAAGA+TGG | - | chr3.2:21752707-21752726 | MS.gene91871:intron | 45.0% | |
| TAGGCATGGTATGTGCATCA+GGG | + | chr3.2:21754064-21754083 | None:intergenic | 45.0% | |
| TCAAGAAGTGGACCACAAGT+AGG | + | chr3.2:21753711-21753730 | None:intergenic | 45.0% | |
| TCAGTTGGAGACGCGAAAAA+TGG | - | chr3.2:21755050-21755069 | MS.gene91871:intron | 45.0% | |
| TCATGGTGAGTTTGACACTG+TGG | - | chr3.2:21753882-21753901 | MS.gene91871:CDS | 45.0% | |
| TCTCCCATTCTCTTCAACCA+AGG | + | chr3.2:21753190-21753209 | None:intergenic | 45.0% | |
| TTCAATGTCCCATTCGGACT+TGG | - | chr3.2:21754942-21754961 | MS.gene91871:intron | 45.0% | |
| TTGGTAGAGTATGTGACTGG+TGG | - | chr3.2:21753384-21753403 | MS.gene91871:intron | 45.0% | |
| ! | ATCCTAGAAGTGAAGGGCAT+AGG | + | chr3.2:21754083-21754102 | None:intergenic | 45.0% |
| ! | GCACATATACTCAGCGGATT+AGG | + | chr3.2:21753111-21753130 | None:intergenic | 45.0% |
| ! | GGTTTGGTAGAGTATGTGAC+TGG | - | chr3.2:21753381-21753400 | MS.gene91871:intron | 45.0% |
| !! | TACCTCTTGTAGGCATTGGA+GGG | + | chr3.2:21753758-21753777 | None:intergenic | 45.0% |
| !! | TTACCTCTTGTAGGCATTGG+AGG | + | chr3.2:21753759-21753778 | None:intergenic | 45.0% |
| !!! | ACCAGGAGGCATGTTTTTTC+CGG | - | chr3.2:21753413-21753432 | MS.gene91871:intron | 45.0% |
| ACCGGAAAAAACATGCCTCC+TGG | + | chr3.2:21753417-21753436 | None:intergenic | 50.0% | |
| AGAGACTCGATGATCCAACC+AGG | + | chr3.2:21754891-21754910 | None:intergenic | 50.0% | |
| ATCTCTGTGCCACCACAAAC+TGG | - | chr3.2:21753570-21753589 | MS.gene91871:intron | 50.0% | |
| CGACATGTCTGTATCGTGTC+TGG | + | chr3.2:21752991-21753010 | None:intergenic | 50.0% | |
| CGTGATACAGGACACACACT+TGG | - | chr3.2:21753972-21753991 | MS.gene91871:CDS | 50.0% | |
| CTCATGGAACACATGCTGTG+AGG | - | chr3.2:21753439-21753458 | MS.gene91871:intron | 50.0% | |
| CTGTGGTCCTGTTCTTGATC+AGG | - | chr3.2:21755256-21755275 | MS.gene91871:CDS | 50.0% | |
| GAGACTCGATGATCCAACCA+GGG | + | chr3.2:21754890-21754909 | None:intergenic | 50.0% | |
| GCATGTGTTCCATGAGTCAC+CGG | + | chr3.2:21753435-21753454 | None:intergenic | 50.0% | |
| GGAACATCACCAGTTTGTGG+TGG | + | chr3.2:21753582-21753601 | None:intergenic | 50.0% | |
| TACCCTCCAATGCCTACAAG+AGG | - | chr3.2:21753753-21753772 | MS.gene91871:CDS | 50.0% | |
| TCAGGTTATAGTGTCCCCTG+TGG | - | chr3.2:21755274-21755293 | MS.gene91871:CDS | 50.0% | |
| TGCCTATGCCCTTCACTTCT+AGG | - | chr3.2:21754078-21754097 | MS.gene91871:CDS | 50.0% | |
| TGGTGGGAGTAAAACACCGT+TGG | + | chr3.2:21754841-21754860 | None:intergenic | 50.0% | |
| TGTGTGTCCTGTATCACGGT+GGG | + | chr3.2:21753970-21753989 | None:intergenic | 50.0% | |
| ! | AGAAGTGAAGGGCATAGGCA+TGG | + | chr3.2:21754078-21754097 | None:intergenic | 50.0% |
| ! | TGGGAGACTTTCTGGTGTAC+TGG | - | chr3.2:21753203-21753222 | MS.gene91871:intron | 50.0% |
| !! | ACCATGTGTTGGTGTCGTGT+CGG | - | chr3.2:21754633-21754652 | MS.gene91871:intron | 50.0% |
| !! | GTCGGTGTTGTGTCATGTGT+CGG | - | chr3.2:21753057-21753076 | MS.gene91871:intron | 50.0% |
| CGACTGCTCCAAGTCCGAAT+GGG | + | chr3.2:21754953-21754972 | None:intergenic | 55.0% | |
| GATCTCTACTCACCACTCCC+TGG | - | chr3.2:21754870-21754889 | MS.gene91871:intron | 55.0% | |
| GGAACACATGCTGTGAGGCT+AGG | - | chr3.2:21753444-21753463 | MS.gene91871:intron | 55.0% | |
| GTGTGTGTCCTGTATCACGG+TGG | + | chr3.2:21753971-21753990 | None:intergenic | 55.0% | |
| TCCGACACGACACCAACACA+TGG | + | chr3.2:21754637-21754656 | None:intergenic | 55.0% | |
| TCGACTGCTCCAAGTCCGAA+TGG | + | chr3.2:21754954-21754973 | None:intergenic | 55.0% | |
| TCGATGATCCAACCAGGGAG+TGG | + | chr3.2:21754885-21754904 | None:intergenic | 55.0% | |
| TCTACTCACCACTCCCTGGT+TGG | - | chr3.2:21754874-21754893 | MS.gene91871:intron | 55.0% | |
| TGCAATGGCGCTTTCTCTGC+CGG | + | chr3.2:21754985-21755004 | None:intergenic | 55.0% | |
| TGTCCAACCCACCGTGATAC+AGG | - | chr3.2:21753960-21753979 | MS.gene91871:CDS | 55.0% | |
| TGTCCTGTATCACGGTGGGT+TGG | + | chr3.2:21753966-21753985 | None:intergenic | 55.0% | |
| ! | GGATTAGGGTGTCCTGGTGT+CGG | + | chr3.2:21753096-21753115 | None:intergenic | 55.0% |
| !! | TGTGTTGGTGTCGTGTCGGA+TGG | - | chr3.2:21754637-21754656 | MS.gene91871:intron | 55.0% |
| ACTGGTGGTCCTCAACCAGG+AGG | - | chr3.2:21753399-21753418 | MS.gene91871:intron | 60.0% | |
| GTGACTGGTGGTCCTCAACC+AGG | - | chr3.2:21753396-21753415 | MS.gene91871:intron | 60.0% | |
| !! | CTCAGCGGATTAGGGTGTCC+TGG | + | chr3.2:21753102-21753121 | None:intergenic | 60.0% |
| !! | GGAGCAGTCGAGCTTGTTGC+CGG | - | chr3.2:21754963-21754982 | MS.gene91871:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 21752117 | 21755301 | 21752117 | ID=MS.gene91871 |
| chr3.2 | mRNA | 21752117 | 21755301 | 21752117 | ID=MS.gene91871.t1;Parent=MS.gene91871 |
| chr3.2 | exon | 21755211 | 21755301 | 21755211 | ID=MS.gene91871.t1.exon1;Parent=MS.gene91871.t1 |
| chr3.2 | CDS | 21755211 | 21755301 | 21755211 | ID=cds.MS.gene91871.t1;Parent=MS.gene91871.t1 |
| chr3.2 | exon | 21753644 | 21754138 | 21753644 | ID=MS.gene91871.t1.exon2;Parent=MS.gene91871.t1 |
| chr3.2 | CDS | 21753644 | 21754138 | 21753644 | ID=cds.MS.gene91871.t1;Parent=MS.gene91871.t1 |
| chr3.2 | exon | 21752117 | 21752637 | 21752117 | ID=MS.gene91871.t1.exon3;Parent=MS.gene91871.t1 |
| chr3.2 | CDS | 21752117 | 21752637 | 21752117 | ID=cds.MS.gene91871.t1;Parent=MS.gene91871.t1 |
| Gene Sequence |
| Protein sequence |
