AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93628

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93628.t1 MTR_6g065270 83.383 337 52 1 12 344 6 342 0.0 600
MS.gene93628.t1 MTR_6g065340 86.628 344 30 1 1 344 8 335 0.0 597
MS.gene93628.t1 MTR_6g065370 79.351 339 70 0 6 344 2 340 0.0 577
MS.gene93628.t1 MTR_6g065400 79.056 339 71 0 6 344 2 340 0.0 575
MS.gene93628.t1 MTR_6g065120 77.419 341 76 1 5 344 2 342 0.0 563
MS.gene93628.t1 MTR_6g065110 68.182 330 105 0 9 338 6 335 3.46e-178 497
MS.gene93628.t1 MTR_6g065430 58.912 331 127 2 11 339 6 329 1.30e-141 404
MS.gene93628.t1 MTR_1g082210 36.963 349 210 4 1 343 1 345 2.15e-77 241
MS.gene93628.t1 MTR_1g089310 37.101 345 206 4 1 338 1 341 1.23e-76 239
MS.gene93628.t1 MTR_1g089310 37.101 345 206 4 1 338 17 357 2.17e-76 239
MS.gene93628.t1 MTR_7g093950 36.782 348 209 5 1 338 1 347 4.22e-76 238
MS.gene93628.t1 MTR_6g464280 35.484 310 185 7 36 338 24 325 9.34e-53 177
MS.gene93628.t1 MTR_8g035540 33.121 314 189 6 35 337 13 316 2.23e-46 160
MS.gene93628.t1 MTR_8g035520 32.153 339 200 9 15 340 6 327 5.06e-46 159
MS.gene93628.t1 MTR_6g464510 33.119 311 191 7 35 338 27 327 6.01e-46 159
MS.gene93628.t1 MTR_4g050140 32.632 285 174 4 64 339 42 317 3.88e-45 157
MS.gene93628.t1 MTR_7g406880 32.013 303 179 8 59 339 54 351 7.12e-45 157
MS.gene93628.t1 MTR_0007s0520 38.140 215 118 4 52 260 39 244 9.64e-43 151
MS.gene93628.t1 MTR_6g464320 34.351 262 161 5 51 305 37 294 3.74e-42 149
MS.gene93628.t1 MTR_8g035500 32.268 313 189 9 36 337 17 317 5.10e-42 149
MS.gene93628.t1 MTR_1g102160 35.918 245 138 5 35 272 23 255 7.51e-42 149
MS.gene93628.t1 MTR_7g107040 31.741 293 179 5 59 341 39 320 1.09e-41 148
MS.gene93628.t1 MTR_1g102170 37.129 202 112 4 63 260 69 259 4.77e-41 147
MS.gene93628.t1 MTR_1g111280 32.226 301 175 9 52 337 52 338 1.77e-40 145
MS.gene93628.t1 MTR_1g012430 31.290 310 193 8 35 339 15 309 2.70e-40 144
MS.gene93628.t1 MTR_3g012440 30.744 309 200 3 45 339 34 342 9.07e-39 140
MS.gene93628.t1 MTR_6g464120 36.493 211 124 4 53 260 43 246 2.31e-37 140
MS.gene93628.t1 MTR_4g086540 30.820 305 177 8 42 341 33 308 3.12e-37 136
MS.gene93628.t1 MTR_4g086510 31.525 295 182 7 53 338 35 318 2.12e-36 134
MS.gene93628.t1 MTR_3g101420 30.000 300 180 7 53 339 34 316 9.92e-35 129
MS.gene93628.t1 MTR_4g086480 30.952 294 180 7 53 337 39 318 1.16e-34 129
MS.gene93628.t1 MTR_7g056207 31.000 300 186 7 53 343 67 354 3.48e-34 129
MS.gene93628.t1 MTR_4g086470 30.405 296 183 7 53 339 38 319 1.66e-29 115
MS.gene93628.t1 MTR_1g105020 28.041 296 185 8 57 337 40 322 6.17e-29 114
MS.gene93628.t1 MTR_6g022710 29.091 275 149 5 95 328 156 425 3.88e-28 114
MS.gene93628.t1 MTR_5g005850 27.273 319 199 9 36 337 26 328 1.01e-25 105
MS.gene93628.t1 MTR_3g450680 27.241 290 185 7 57 332 48 325 2.34e-25 104
MS.gene93628.t1 MTR_8g040860 26.333 300 191 8 50 332 36 322 1.13e-23 100
MS.gene93628.t1 MTR_6g065470 34.503 171 80 3 11 163 6 162 1.20e-22 93.2
MS.gene93628.t1 MTR_5g005900 26.190 294 192 7 61 339 45 328 1.41e-22 97.1
MS.gene93628.t1 MTR_7g051020 30.363 303 183 8 52 339 38 327 3.39e-22 95.9
MS.gene93628.t1 MTR_5g005920 25.076 331 217 11 26 339 16 332 3.52e-22 95.9
MS.gene93628.t1 MTR_1g104930 29.655 290 178 7 63 339 48 324 1.14e-19 88.6
MS.gene93628.t1 MTR_1g104933 29.310 290 175 8 63 339 46 318 4.38e-17 81.3
MS.gene93628.t1 MTR_6g065480 53.448 58 26 1 237 294 1 57 9.17e-15 68.6
MS.gene93628.t1 MTR_0007s0480 30.337 178 105 7 175 339 1 172 1.38e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93628.t1 AT5G23530 53.779 344 141 4 4 343 3 332 9.74e-137 392
MS.gene93628.t1 AT5G27320 37.609 343 206 3 1 338 1 340 1.08e-80 249
MS.gene93628.t1 AT3G05120 35.072 345 214 3 1 338 1 342 9.33e-73 229
MS.gene93628.t1 AT3G63010 35.277 343 212 3 8 344 10 348 3.75e-72 228
MS.gene93628.t1 AT5G62180 33.546 313 193 9 36 340 21 326 3.28e-49 168
MS.gene93628.t1 AT5G06570 36.552 290 162 6 64 341 50 329 3.98e-46 160
MS.gene93628.t1 AT5G06570 36.552 290 162 6 64 341 50 329 3.98e-46 160
MS.gene93628.t1 AT5G06570 36.552 290 162 6 64 341 65 344 5.36e-46 160
MS.gene93628.t1 AT5G06570 36.552 290 162 6 64 341 65 344 5.36e-46 160
MS.gene93628.t1 AT2G45600 31.633 294 175 7 63 343 39 319 4.07e-44 154
MS.gene93628.t1 AT5G16080 32.143 280 166 6 52 320 54 320 1.14e-43 154
MS.gene93628.t1 AT1G68620 31.707 287 175 7 60 338 57 330 1.11e-42 151
MS.gene93628.t1 AT1G47480 30.000 330 207 8 17 342 5 314 1.80e-42 150
MS.gene93628.t1 AT2G45610 31.210 314 194 8 36 338 22 324 1.90e-39 142
MS.gene93628.t1 AT3G48700 29.605 304 185 8 53 337 32 325 1.12e-33 127
MS.gene93628.t1 AT1G19190 29.430 316 193 10 36 339 18 315 2.64e-33 125
MS.gene93628.t1 AT2G03550 30.537 298 179 8 53 339 32 312 1.26e-31 121
MS.gene93628.t1 AT5G14310 30.325 277 146 6 96 328 148 421 2.76e-28 114
MS.gene93628.t1 AT3G27320 26.611 357 182 7 51 328 48 403 2.97e-28 114
MS.gene93628.t1 AT3G48690 29.658 263 164 5 53 304 32 284 9.12e-28 111
MS.gene93628.t1 AT3G27320 29.592 294 157 7 76 328 151 435 4.43e-27 111
MS.gene93628.t1 AT1G49640 33.333 192 119 4 41 231 23 206 4.80e-26 106
MS.gene93628.t1 AT1G49660 28.571 252 164 5 57 301 36 278 9.26e-25 102
MS.gene93628.t1 AT1G49650 29.412 255 163 6 57 304 92 336 2.45e-22 97.1

Find 102 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACCCCGAAAATAATATT+TGG 0.224192 6.2:+70562029 MS.gene93628:CDS
AGACAGTGCCGGTGCAAATT+TGG 0.273184 6.2:+70562372 MS.gene93628:CDS
GACGGGAAGGGAGGTTGTTT+TGG 0.283048 6.2:-70562107 None:intergenic
ATATTTGGATGAGAATAAAA+TGG 0.290955 6.2:+70562306 MS.gene93628:CDS
CACGGGGCTTCCAAGGAATA+AGG 0.291743 6.2:-70561862 None:intergenic
GGGGTTAATGGTAACCTCTT+TGG 0.307272 6.2:-70562014 None:intergenic
TGGCACATCACCTTGCAGTT+AGG 0.348786 6.2:+70562392 MS.gene93628:CDS
CAACAACAGCGGAGATTTGC+TGG 0.356181 6.2:-70562210 None:intergenic
GGTTTGATCCTTTAAATGAT+TGG 0.359729 6.2:+70562674 MS.gene93628:CDS
CTTCCAAGGAATAAGGGGTT+TGG 0.365944 6.2:-70561855 None:intergenic
GGCAAAAGAGGTATTATGAT+TGG 0.376841 6.2:+70562695 MS.gene93628:CDS
TGAGTAGATTCAGGCAAATC+AGG 0.377775 6.2:-70562787 None:intergenic
GGCACATCACCTTGCAGTTA+GGG 0.384459 6.2:+70562393 MS.gene93628:CDS
ACCCGATAATCCGGATTTCC+TGG 0.387273 6.2:-70562432 None:intergenic
TTCCAAGGAATAAGGGGTTT+GGG 0.393433 6.2:-70561854 None:intergenic
CCGTTAACGGGAGTGGCATT+AGG 0.400101 6.2:-70561983 None:intergenic
TCGATACCAACCCGATAATC+CGG 0.408280 6.2:-70562441 None:intergenic
GCCGAATGCGGAGGATTTGT+CGG 0.409294 6.2:+70562615 MS.gene93628:CDS
CTCCAGGAAATCCGGATTAT+CGG 0.413050 6.2:+70562430 MS.gene93628:CDS
AACCCAAACCCCTTATTCCT+TGG 0.419489 6.2:+70561852 MS.gene93628:CDS
ACGGGGCTTCCAAGGAATAA+GGG 0.420476 6.2:-70561861 None:intergenic
GTGTCAAAATGTTTCATTGC+TGG 0.422545 6.2:+70562349 MS.gene93628:CDS
TTTGGTGGAAACGCCGTTAA+CGG 0.426673 6.2:-70561996 None:intergenic
CCTAATGCCACTCCCGTTAA+CGG 0.433533 6.2:+70561983 MS.gene93628:CDS
CCGAATGCGGAGGATTTGTC+GGG 0.438724 6.2:+70562616 MS.gene93628:CDS
TTGGTGGAAACGCCGTTAAC+GGG 0.439184 6.2:-70561995 None:intergenic
CTCTTTACACCCTCTGTTGG+CGG 0.440539 6.2:+70562058 MS.gene93628:CDS
CCCGACAAATCCTCCGCATT+CGG 0.445071 6.2:-70562616 None:intergenic
TCCAGGAAATCCGGATTATC+GGG 0.446897 6.2:+70562431 MS.gene93628:CDS
CGCCGTTGGTGTCGATGGTA+AGG 0.455201 6.2:+70562521 MS.gene93628:CDS
TGGCATTAGGTGAGGATTTG+CGG 0.456562 6.2:-70561970 None:intergenic
CTTTAAATGATTGGCAAAAG+AGG 0.459493 6.2:+70562683 MS.gene93628:CDS
AAGCAGCGCTCCAGGAAATC+CGG 0.461952 6.2:+70562422 MS.gene93628:CDS
AATAATCAATCATTTAGAAC+AGG 0.469700 6.2:-70562848 None:intergenic
GAGGCGGAGATTAAACTTGA+TGG 0.470210 6.2:+70562496 MS.gene93628:CDS
ATAATCAATTGAGTAGATTC+AGG 0.472084 6.2:-70562796 None:intergenic
GGTTTGTAAAGCAGCGCTCC+AGG 0.475550 6.2:+70562414 MS.gene93628:CDS
GAGGGATCGAACCGGGATCA+TGG 0.487598 6.2:+70562574 MS.gene93628:CDS
TTTACCGGAGGGATCGAACC+GGG 0.500601 6.2:+70562567 MS.gene93628:CDS
TATGATTGGTTGAAGAAATG+TGG 0.503360 6.2:+70562709 MS.gene93628:CDS
ATGGTAGCACGGGGCTTCCA+AGG 0.504515 6.2:-70561869 None:intergenic
CGTCTCTTTACACCCTCTGT+TGG 0.511038 6.2:+70562055 MS.gene93628:CDS
GGAAACGCCGTTAACGGGAG+TGG 0.513035 6.2:-70561990 None:intergenic
AGATTTGCTGGCAGAGTCTA+CGG 0.515690 6.2:-70562198 None:intergenic
GTTAATGGTAACCTCTTTGG+TGG 0.519242 6.2:-70562011 None:intergenic
CGATGGTAAGGACGGATTGG+TGG 0.521258 6.2:+70562533 MS.gene93628:CDS
TGCGACGGATAGCGATGCTC+TGG 0.525484 6.2:-70562256 None:intergenic
TGGTAAGGACGGATTGGTGG+TGG 0.530541 6.2:+70562536 MS.gene93628:CDS
GGCGGAGAAGTCCTCGGAGA+TGG 0.534581 6.2:+70562076 MS.gene93628:CDS
AAGAAGTGAAATGGTAGCAC+GGG 0.536287 6.2:-70561879 None:intergenic
GAAGAAAATGACGACGGGAA+GGG 0.539782 6.2:-70562119 None:intergenic
TGGATCGCCGTTGGTGTCGA+TGG 0.540273 6.2:+70562516 MS.gene93628:CDS
GGAAGAAAATGACGACGGGA+AGG 0.541051 6.2:-70562120 None:intergenic
CATTAACAGCACCATGATCC+CGG 0.544471 6.2:-70562585 None:intergenic
AAGGACGGATTGGTGGTGGA+AGG 0.550023 6.2:+70562540 MS.gene93628:CDS
ATGATTGGTTGAAGAAATGT+GGG 0.557528 6.2:+70562710 MS.gene93628:CDS
AAAAGCATCATAGTAGATTG+AGG 0.560272 6.2:-70562173 None:intergenic
TGATCCCGGTTCGATCCCTC+CGG 0.563601 6.2:-70562571 None:intergenic
TGGTGGGGAGGAACGGACTG+AGG 0.564345 6.2:+70562477 MS.gene93628:CDS
TTCATTGCTGGAGACAGTGC+CGG 0.566877 6.2:+70562361 MS.gene93628:CDS
TCTGTTGGCGGAGAAGTCCT+CGG 0.567760 6.2:+70562070 MS.gene93628:CDS
CGGGGCTTCCAAGGAATAAG+GGG 0.568897 6.2:-70561860 None:intergenic
TGTAAGCGGGCCGAATGCGG+AGG 0.569404 6.2:+70562606 MS.gene93628:CDS
TGTCGATGGTAAGGACGGAT+TGG 0.572977 6.2:+70562530 MS.gene93628:CDS
TAAACTTGATGGATCGCCGT+TGG 0.573185 6.2:+70562507 MS.gene93628:CDS
GGAAATCCGGATTATCGGGT+TGG 0.574144 6.2:+70562435 MS.gene93628:CDS
ATGGTGCTGTTAATGTAAGC+GGG 0.580275 6.2:+70562593 MS.gene93628:CDS
GGAGAAGTCCTCGGAGATGG+TGG 0.581309 6.2:+70562079 MS.gene93628:CDS
AGGACTTCTCCGCCAACAGA+GGG 0.584418 6.2:-70562067 None:intergenic
TAACGGCGTTTCCACCAAAG+AGG 0.584715 6.2:+70562000 MS.gene93628:CDS
TGGGGAGGAACGGACTGAGG+CGG 0.585654 6.2:+70562480 MS.gene93628:CDS
TCAATTGATTATGCAAGTCA+AGG 0.586254 6.2:+70562807 MS.gene93628:CDS
GCATCATAGTAGATTGAGGA+GGG 0.595871 6.2:-70562169 None:intergenic
CCGTGGAAGAAAATGACGAC+GGG 0.598794 6.2:-70562124 None:intergenic
AACGGGAGTGGCATTAGGTG+AGG 0.601408 6.2:-70561978 None:intergenic
CATGGTGCTGTTAATGTAAG+CGG 0.604475 6.2:+70562592 MS.gene93628:CDS
AGCGATGCTCTGGTGTGAGG+CGG 0.610734 6.2:-70562246 None:intergenic
GTGATGTGCCAAATTTGCAC+CGG 0.614788 6.2:-70562380 None:intergenic
GAGGACTTCTCCGCCAACAG+AGG 0.617426 6.2:-70562068 None:intergenic
CAACAGAGGGTGTAAAGAGA+CGG 0.619635 6.2:-70562054 None:intergenic
GAAAATGACGACGGGAAGGG+AGG 0.620487 6.2:-70562116 None:intergenic
GTCCTTACCATCGACACCAA+CGG 0.621799 6.2:-70562523 None:intergenic
GATAGCGATGCTCTGGTGTG+AGG 0.626155 6.2:-70562249 None:intergenic
GATGCTTGTTGTCGCTCTAA+CGG 0.626967 6.2:+70561914 MS.gene93628:CDS
GTTGGTGTCGATGGTAAGGA+CGG 0.629245 6.2:+70562525 MS.gene93628:CDS
TCTCCGTCGTCGTATTGCGA+CGG 0.629386 6.2:-70562271 None:intergenic
AAAGAAGTGAAATGGTAGCA+CGG 0.629575 6.2:-70561880 None:intergenic
GTTGATTGAATATCCAAACA+TGG 0.630966 6.2:+70562744 MS.gene93628:CDS
CTTTACAAACCCTAACTGCA+AGG 0.644163 6.2:-70562402 None:intergenic
TAATGTAAGCGGGCCGAATG+CGG 0.645773 6.2:+70562603 MS.gene93628:CDS
GCAATACGACGACGGAGAGG+CGG 0.653238 6.2:+70562276 MS.gene93628:CDS
TGGTTGCACCACCATCTCCG+AGG 0.670541 6.2:-70562087 None:intergenic
GTTAGAGCGACAACAAGCAT+CGG 0.673582 6.2:-70561912 None:intergenic
CATCATAGTAGATTGAGGAG+GGG 0.673790 6.2:-70562168 None:intergenic
GTCGCAATACGACGACGGAG+AGG 0.678768 6.2:+70562273 MS.gene93628:CDS
AGCATCATAGTAGATTGAGG+AGG 0.682743 6.2:-70562170 None:intergenic
ACCGTGGAAGAAAATGACGA+CGG 0.693683 6.2:-70562125 None:intergenic
TGAAGAAGTTAAAGAGACGA+CGG 0.697225 6.2:-70561946 None:intergenic
TATCCGTCGCAATACGACGA+CGG 0.702682 6.2:+70562268 MS.gene93628:CDS
GATAGTTGAAGCCACCACCG+TGG 0.715381 6.2:-70562141 None:intergenic
AGAAGTGAAATGGTAGCACG+GGG 0.734749 6.2:-70561878 None:intergenic
GTTGACAGAGACAACAACAG+CGG 0.758726 6.2:-70562221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTGGATGAGAATAAAA+TGG + chr6.2:70562306-70562325 MS.gene93628:CDS 20.0%
!! TAAAAATGAAAGAAGTGAAA+TGG - chr6.2:70561891-70561910 None:intergenic 20.0%
! ATAATCAATTGAGTAGATTC+AGG - chr6.2:70562799-70562818 None:intergenic 25.0%
! TTAACCCCGAAAATAATATT+TGG + chr6.2:70562029-70562048 MS.gene93628:CDS 25.0%
!! ACGGAACCAAATATTATTTT+CGG - chr6.2:70562038-70562057 None:intergenic 25.0%
!!! AATATTATTTTCGGGGTTAA+TGG - chr6.2:70562029-70562048 None:intergenic 25.0%
!!! TGAGAATAAAATGGTTTTAC+CGG + chr6.2:70562315-70562334 MS.gene93628:CDS 25.0%
CCAATAAAAACAAGCGTATT+CGG - chr6.2:70562652-70562671 None:intergenic 30.0%
CTTTAAATGATTGGCAAAAG+AGG + chr6.2:70562683-70562702 MS.gene93628:CDS 30.0%
GGTTTGATCCTTTAAATGAT+TGG + chr6.2:70562674-70562693 MS.gene93628:CDS 30.0%
GTTGATTGAATATCCAAACA+TGG + chr6.2:70562744-70562763 MS.gene93628:CDS 30.0%
TCAATTGATTATGCAAGTCA+AGG + chr6.2:70562807-70562826 MS.gene93628:CDS 30.0%
! ATGATTGGTTGAAGAAATGT+GGG + chr6.2:70562710-70562729 MS.gene93628:CDS 30.0%
! CGGAACCAAATATTATTTTC+GGG - chr6.2:70562037-70562056 None:intergenic 30.0%
! CTCTTTTGCCAATCATTTAA+AGG - chr6.2:70562685-70562704 None:intergenic 30.0%
! GGAACCAAATATTATTTTCG+GGG - chr6.2:70562036-70562055 None:intergenic 30.0%
! TAAAAAGCATGAACCATGTT+TGG - chr6.2:70562760-70562779 None:intergenic 30.0%
! TATGATTGGTTGAAGAAATG+TGG + chr6.2:70562709-70562728 MS.gene93628:CDS 30.0%
!! AAAAGCATCATAGTAGATTG+AGG - chr6.2:70562176-70562195 None:intergenic 30.0%
!!! AATACGCTTGTTTTTATTGG+TGG + chr6.2:70562652-70562671 MS.gene93628:CDS 30.0%
!!! ATACGCTTGTTTTTATTGGT+GGG + chr6.2:70562653-70562672 MS.gene93628:CDS 30.0%
AAAGAAGTGAAATGGTAGCA+CGG - chr6.2:70561883-70561902 None:intergenic 35.0%
GTGTCAAAATGTTTCATTGC+TGG + chr6.2:70562349-70562368 MS.gene93628:CDS 35.0%
TGAAGAAGTTAAAGAGACGA+CGG - chr6.2:70561949-70561968 None:intergenic 35.0%
! TTTGACACATCAGCATTTTC+CGG - chr6.2:70562337-70562356 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.2:70562695-70562714 MS.gene93628:CDS 35.0%
!!! AGAGGCGGTTTTGAAATATT+TGG + chr6.2:70562291-70562310 MS.gene93628:CDS 35.0%
!!! CCGAATACGCTTGTTTTTAT+TGG + chr6.2:70562649-70562668 MS.gene93628:CDS 35.0%
!!! GTATCGATTCAGCCTTTTTT+TGG + chr6.2:70562457-70562476 MS.gene93628:CDS 35.0%
AAGAAGTGAAATGGTAGCAC+GGG - chr6.2:70561882-70561901 None:intergenic 40.0%
AGCATCATAGTAGATTGAGG+AGG - chr6.2:70562173-70562192 None:intergenic 40.0%
CATCATAGTAGATTGAGGAG+GGG - chr6.2:70562171-70562190 None:intergenic 40.0%
CTTTACAAACCCTAACTGCA+AGG - chr6.2:70562405-70562424 None:intergenic 40.0%
GCATCATAGTAGATTGAGGA+GGG - chr6.2:70562172-70562191 None:intergenic 40.0%
GTTAATGGTAACCTCTTTGG+TGG - chr6.2:70562014-70562033 None:intergenic 40.0%
TGAGTAGATTCAGGCAAATC+AGG - chr6.2:70562790-70562809 None:intergenic 40.0%
TTCCAAGGAATAAGGGGTTT+GGG - chr6.2:70561857-70561876 None:intergenic 40.0%
!! ATGGTGCTGTTAATGTAAGC+GGG + chr6.2:70562593-70562612 MS.gene93628:CDS 40.0%
!! CATGGTGCTGTTAATGTAAG+CGG + chr6.2:70562592-70562611 MS.gene93628:CDS 40.0%
!!! CGATTCAGCCTTTTTTTGGT+GGG + chr6.2:70562461-70562480 MS.gene93628:CDS 40.0%
!!! GATTCAGCCTTTTTTTGGTG+GGG + chr6.2:70562462-70562481 MS.gene93628:CDS 40.0%
!!! TCGATTCAGCCTTTTTTTGG+TGG + chr6.2:70562460-70562479 MS.gene93628:CDS 40.0%
AACCCAAACCCCTTATTCCT+TGG + chr6.2:70561852-70561871 MS.gene93628:CDS 45.0%
ACCGTGGAAGAAAATGACGA+CGG - chr6.2:70562128-70562147 None:intergenic 45.0%
AGAAGTGAAATGGTAGCACG+GGG - chr6.2:70561881-70561900 None:intergenic 45.0%
CATTAACAGCACCATGATCC+CGG - chr6.2:70562588-70562607 None:intergenic 45.0%
CTCCAGGAAATCCGGATTAT+CGG + chr6.2:70562430-70562449 MS.gene93628:CDS 45.0%
CTTCCAAGGAATAAGGGGTT+TGG - chr6.2:70561858-70561877 None:intergenic 45.0%
GAAGAAAATGACGACGGGAA+GGG - chr6.2:70562122-70562141 None:intergenic 45.0%
GAGGCGGAGATTAAACTTGA+TGG + chr6.2:70562496-70562515 MS.gene93628:CDS 45.0%
GGGGTTAATGGTAACCTCTT+TGG - chr6.2:70562017-70562036 None:intergenic 45.0%
GTGATGTGCCAAATTTGCAC+CGG - chr6.2:70562383-70562402 None:intergenic 45.0%
GTTAGAGCGACAACAAGCAT+CGG - chr6.2:70561915-70561934 None:intergenic 45.0%
GTTGACAGAGACAACAACAG+CGG - chr6.2:70562224-70562243 None:intergenic 45.0%
TCCAGGAAATCCGGATTATC+GGG + chr6.2:70562431-70562450 MS.gene93628:CDS 45.0%
TCGATACCAACCCGATAATC+CGG - chr6.2:70562444-70562463 None:intergenic 45.0%
TGGCATTAGGTGAGGATTTG+CGG - chr6.2:70561973-70561992 None:intergenic 45.0%
TTTGGTGGAAACGCCGTTAA+CGG - chr6.2:70561999-70562018 None:intergenic 45.0%
! CAACAGAGGGTGTAAAGAGA+CGG - chr6.2:70562057-70562076 None:intergenic 45.0%
! TAAACTTGATGGATCGCCGT+TGG + chr6.2:70562507-70562526 MS.gene93628:CDS 45.0%
!! AGATTTGCTGGCAGAGTCTA+CGG - chr6.2:70562201-70562220 None:intergenic 45.0%
!! GATGCTTGTTGTCGCTCTAA+CGG + chr6.2:70561914-70561933 MS.gene93628:CDS 45.0%
!!! CTTTTTTTGGTGGGGAGGAA+CGG + chr6.2:70562470-70562489 MS.gene93628:CDS 45.0%
!!! GTGGTGGAAGGTGTTTTTAC+CGG + chr6.2:70562552-70562571 MS.gene93628:CDS 45.0%
!!! TGGAAGGTGTTTTTACCGGA+GGG + chr6.2:70562556-70562575 MS.gene93628:CDS 45.0%
ACCCGATAATCCGGATTTCC+TGG - chr6.2:70562435-70562454 None:intergenic 50.0%
ACGGGGCTTCCAAGGAATAA+GGG - chr6.2:70561864-70561883 None:intergenic 50.0%
CAACAACAGCGGAGATTTGC+TGG - chr6.2:70562213-70562232 None:intergenic 50.0%
CCGTGGAAGAAAATGACGAC+GGG - chr6.2:70562127-70562146 None:intergenic 50.0%
CCTAATGCCACTCCCGTTAA+CGG + chr6.2:70561983-70562002 MS.gene93628:CDS 50.0%
CGTCTCTTTACACCCTCTGT+TGG + chr6.2:70562055-70562074 MS.gene93628:CDS 50.0%
CGTTCCTCCCCACCAAAAAA+AGG - chr6.2:70562472-70562491 None:intergenic 50.0%
CTCTTTACACCCTCTGTTGG+CGG + chr6.2:70562058-70562077 MS.gene93628:CDS 50.0%
GGAAATCCGGATTATCGGGT+TGG + chr6.2:70562435-70562454 MS.gene93628:CDS 50.0%
GGAAGAAAATGACGACGGGA+AGG - chr6.2:70562123-70562142 None:intergenic 50.0%
GGCACATCACCTTGCAGTTA+GGG + chr6.2:70562393-70562412 MS.gene93628:CDS 50.0%
GTCCTTACCATCGACACCAA+CGG - chr6.2:70562526-70562545 None:intergenic 50.0%
TAACGGCGTTTCCACCAAAG+AGG + chr6.2:70562000-70562019 MS.gene93628:CDS 50.0%
TAATGTAAGCGGGCCGAATG+CGG + chr6.2:70562603-70562622 MS.gene93628:CDS 50.0%
TATCCGTCGCAATACGACGA+CGG + chr6.2:70562268-70562287 MS.gene93628:CDS 50.0%
TGGCACATCACCTTGCAGTT+AGG + chr6.2:70562392-70562411 MS.gene93628:CDS 50.0%
TGTCGATGGTAAGGACGGAT+TGG + chr6.2:70562530-70562549 MS.gene93628:CDS 50.0%
TTCATTGCTGGAGACAGTGC+CGG + chr6.2:70562361-70562380 MS.gene93628:CDS 50.0%
TTGGTGGAAACGCCGTTAAC+GGG - chr6.2:70561998-70562017 None:intergenic 50.0%
! TTTTACCGGAGGGATCGAAC+CGG + chr6.2:70562566-70562585 MS.gene93628:CDS 50.0%
!! AGACAGTGCCGGTGCAAATT+TGG + chr6.2:70562372-70562391 MS.gene93628:CDS 50.0%
!! CCCGTCGTCATTTTCTTCCA+CGG + chr6.2:70562124-70562143 MS.gene93628:CDS 50.0%
!! GTCATTTTCTTCCACGGTGG+TGG + chr6.2:70562130-70562149 MS.gene93628:CDS 50.0%
!! GTCGTCATTTTCTTCCACGG+TGG + chr6.2:70562127-70562146 MS.gene93628:CDS 50.0%
!! GTTGGTGTCGATGGTAAGGA+CGG + chr6.2:70562525-70562544 MS.gene93628:CDS 50.0%
!!! GTGGAAGGTGTTTTTACCGG+AGG + chr6.2:70562555-70562574 MS.gene93628:CDS 50.0%
!!! TCAGCCTTTTTTTGGTGGGG+AGG + chr6.2:70562465-70562484 MS.gene93628:CDS 50.0%
AACGGGAGTGGCATTAGGTG+AGG - chr6.2:70561981-70562000 None:intergenic 55.0%
AAGCAGCGCTCCAGGAAATC+CGG + chr6.2:70562422-70562441 MS.gene93628:CDS 55.0%
AGGACTTCTCCGCCAACAGA+GGG - chr6.2:70562070-70562089 None:intergenic 55.0%
CACGGGGCTTCCAAGGAATA+AGG - chr6.2:70561865-70561884 None:intergenic 55.0%
CCCGACAAATCCTCCGCATT+CGG - chr6.2:70562619-70562638 None:intergenic 55.0%
CCGAATGCGGAGGATTTGTC+GGG + chr6.2:70562616-70562635 MS.gene93628:CDS 55.0%
CCGTTAACGGGAGTGGCATT+AGG - chr6.2:70561986-70562005 None:intergenic 55.0%
CGGGGCTTCCAAGGAATAAG+GGG - chr6.2:70561863-70561882 None:intergenic 55.0%
GAAAATGACGACGGGAAGGG+AGG - chr6.2:70562119-70562138 None:intergenic 55.0%
GATAGCGATGCTCTGGTGTG+AGG - chr6.2:70562252-70562271 None:intergenic 55.0%
GATAGTTGAAGCCACCACCG+TGG - chr6.2:70562144-70562163 None:intergenic 55.0%
GCCGAATGCGGAGGATTTGT+CGG + chr6.2:70562615-70562634 MS.gene93628:CDS 55.0%
GGTTTGTAAAGCAGCGCTCC+AGG + chr6.2:70562414-70562433 MS.gene93628:CDS 55.0%
TCTCCGTCGTCGTATTGCGA+CGG - chr6.2:70562274-70562293 None:intergenic 55.0%
TCTGTTGGCGGAGAAGTCCT+CGG + chr6.2:70562070-70562089 MS.gene93628:CDS 55.0%
TTTACCGGAGGGATCGAACC+GGG + chr6.2:70562567-70562586 MS.gene93628:CDS 55.0%
! GACGGGAAGGGAGGTTGTTT+TGG - chr6.2:70562110-70562129 None:intergenic 55.0%
!! AAGGACGGATTGGTGGTGGA+AGG + chr6.2:70562540-70562559 MS.gene93628:CDS 55.0%
!! CGATGGTAAGGACGGATTGG+TGG + chr6.2:70562533-70562552 MS.gene93628:CDS 55.0%
!! TGGTAAGGACGGATTGGTGG+TGG + chr6.2:70562536-70562555 MS.gene93628:CDS 55.0%
AGCGATGCTCTGGTGTGAGG+CGG - chr6.2:70562249-70562268 None:intergenic 60.0%
ATGGTAGCACGGGGCTTCCA+AGG - chr6.2:70561872-70561891 None:intergenic 60.0%
GAGGACTTCTCCGCCAACAG+AGG - chr6.2:70562071-70562090 None:intergenic 60.0%
GAGGGATCGAACCGGGATCA+TGG + chr6.2:70562574-70562593 MS.gene93628:CDS 60.0%
GCAATACGACGACGGAGAGG+CGG + chr6.2:70562276-70562295 MS.gene93628:CDS 60.0%
GGAAACGCCGTTAACGGGAG+TGG - chr6.2:70561993-70562012 None:intergenic 60.0%
GGAGAAGTCCTCGGAGATGG+TGG + chr6.2:70562079-70562098 MS.gene93628:CDS 60.0%
GTCGCAATACGACGACGGAG+AGG + chr6.2:70562273-70562292 MS.gene93628:CDS 60.0%
TGCGACGGATAGCGATGCTC+TGG - chr6.2:70562259-70562278 None:intergenic 60.0%
TGGTTGCACCACCATCTCCG+AGG - chr6.2:70562090-70562109 None:intergenic 60.0%
! TGATCCCGGTTCGATCCCTC+CGG - chr6.2:70562574-70562593 None:intergenic 60.0%
!! CGCCGTTGGTGTCGATGGTA+AGG + chr6.2:70562521-70562540 MS.gene93628:CDS 60.0%
!! TGGATCGCCGTTGGTGTCGA+TGG + chr6.2:70562516-70562535 MS.gene93628:CDS 60.0%
GGCGGAGAAGTCCTCGGAGA+TGG + chr6.2:70562076-70562095 MS.gene93628:CDS 65.0%
TGTAAGCGGGCCGAATGCGG+AGG + chr6.2:70562606-70562625 MS.gene93628:CDS 65.0%
!! TGGGGAGGAACGGACTGAGG+CGG + chr6.2:70562480-70562499 MS.gene93628:CDS 65.0%
!! TGGTGGGGAGGAACGGACTG+AGG + chr6.2:70562477-70562496 MS.gene93628:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 70561827 70562861 70561827 ID=MS.gene93628
chr6.2 mRNA 70561827 70562861 70561827 ID=MS.gene93628.t1;Parent=MS.gene93628
chr6.2 exon 70561827 70562861 70561827 ID=MS.gene93628.t1.exon1;Parent=MS.gene93628.t1
chr6.2 CDS 70561827 70562861 70561827 ID=cds.MS.gene93628.t1;Parent=MS.gene93628.t1
Gene Sequence

>MS.gene93628

ATGTCACACTCAAACTCAACAAACAAACCCAAACCCCTTATTCCTTGGAAGCCCCGTGCTACCATTTCACTTCTTTCATTTTTAACCGATGCTTGTTGTCGCTCTAACGGCACATTCAACCGTCGTCTCTTTAACTTCTTCATCCGCAAATCCTCACCTAATGCCACTCCCGTTAACGGCGTTTCCACCAAAGAGGTTACCATTAACCCCGAAAATAATATTTGGTTCCGTCTCTTTACACCCTCTGTTGGCGGAGAAGTCCTCGGAGATGGTGGTGCAACCAAAACAACCTCCCTTCCCGTCGTCATTTTCTTCCACGGTGGTGGCTTCAACTATCTTTGCCCCTCCTCAATCTACTATGATGCTTTTTGCCGTAGACTCTGCCAGCAAATCTCCGCTGTTGTTGTCTCTGTCAACTACCGCCTCACACCAGAGCATCGCTATCCGTCGCAATACGACGACGGAGAGGCGGTTTTGAAATATTTGGATGAGAATAAAATGGTTTTACCGGAAAATGCTGATGTGTCAAAATGTTTCATTGCTGGAGACAGTGCCGGTGCAAATTTGGCACATCACCTTGCAGTTAGGGTTTGTAAAGCAGCGCTCCAGGAAATCCGGATTATCGGGTTGGTATCGATTCAGCCTTTTTTTGGTGGGGAGGAACGGACTGAGGCGGAGATTAAACTTGATGGATCGCCGTTGGTGTCGATGGTAAGGACGGATTGGTGGTGGAAGGTGTTTTTACCGGAGGGATCGAACCGGGATCATGGTGCTGTTAATGTAAGCGGGCCGAATGCGGAGGATTTGTCGGGTTTGCATTATCCGAATACGCTTGTTTTTATTGGTGGGTTTGATCCTTTAAATGATTGGCAAAAGAGGTATTATGATTGGTTGAAGAAATGTGGGAAAAAGATTGAGTTGATTGAATATCCAAACATGGTTCATGCTTTTTATATTTTTCCTGATTTGCCTGAATCTACTCAATTGATTATGCAAGTCAAGGAGTTTGTCAACAAAGTCTCCTGTTCTAAATGA
Protein sequence

>MS.gene93628.t1

MSHSNSTNKPKPLIPWKPRATISLLSFLTDACCRSNGTFNRRLFNFFIRKSSPNATPVNGVSTKEVTINPENNIWFRLFTPSVGGEVLGDGGATKTTSLPVVIFFHGGGFNYLCPSSIYYDAFCRRLCQQISAVVVSVNYRLTPEHRYPSQYDDGEAVLKYLDENKMVLPENADVSKCFIAGDSAGANLAHHLAVRVCKAALQEIRIIGLVSIQPFFGGEERTEAEIKLDGSPLVSMVRTDWWWKVFLPEGSNRDHGAVNVSGPNAEDLSGLHYPNTLVFIGGFDPLNDWQKRYYDWLKKCGKKIELIEYPNMVHAFYIFPDLPESTQLIMQVKEFVNKVSCSK