AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93630.t1 MTR_6g065400 93.056 288 20 0 1 288 1 288 0.0 556
MS.gene93630.t1 MTR_6g065370 92.014 288 23 0 1 288 1 288 0.0 551
MS.gene93630.t1 MTR_6g065270 79.649 285 54 1 8 288 6 290 3.06e-171 477
MS.gene93630.t1 MTR_6g065120 77.083 288 65 1 2 288 3 290 1.62e-166 465
MS.gene93630.t1 MTR_6g065340 77.003 287 50 1 2 288 13 283 2.68e-153 432
MS.gene93630.t1 MTR_6g065110 71.127 284 82 0 5 288 6 289 4.44e-152 429
MS.gene93630.t1 MTR_6g065430 59.155 284 107 2 7 288 6 282 4.71e-119 345
MS.gene93630.t1 MTR_1g089310 43.151 292 157 3 1 287 7 294 6.15e-76 235
MS.gene93630.t1 MTR_1g089310 43.151 292 157 3 1 287 23 310 8.91e-76 235
MS.gene93630.t1 MTR_1g082210 41.581 291 163 2 1 287 7 294 6.16e-74 230
MS.gene93630.t1 MTR_7g093950 40.000 295 168 4 1 287 7 300 5.38e-71 223
MS.gene93630.t1 MTR_6g464280 39.552 268 142 6 32 289 24 281 1.01e-54 180
MS.gene93630.t1 MTR_6g464510 37.918 269 145 7 31 289 27 283 1.14e-50 170
MS.gene93630.t1 MTR_8g035540 37.945 253 136 5 47 288 30 272 3.91e-50 168
MS.gene93630.t1 MTR_1g102160 36.331 278 140 9 31 289 23 282 1.36e-46 159
MS.gene93630.t1 MTR_0007s0520 37.407 270 142 8 1 264 1 249 1.99e-45 156
MS.gene93630.t1 MTR_6g464320 38.158 228 131 4 32 256 25 245 7.05e-45 155
MS.gene93630.t1 MTR_8g035520 35.458 251 141 6 49 288 40 280 5.29e-44 152
MS.gene93630.t1 MTR_1g102170 36.555 238 122 6 32 260 43 260 2.70e-43 151
MS.gene93630.t1 MTR_6g464120 35.417 240 131 6 32 264 29 251 8.30e-43 154
MS.gene93630.t1 MTR_1g012430 36.328 256 145 6 31 283 15 255 1.39e-41 145
MS.gene93630.t1 MTR_4g050140 34.601 263 151 4 31 285 17 266 2.15e-39 140
MS.gene93630.t1 MTR_8g035500 31.716 268 163 6 32 289 17 274 4.85e-39 139
MS.gene93630.t1 MTR_7g406880 36.400 250 134 8 55 285 54 297 6.01e-38 137
MS.gene93630.t1 MTR_7g107040 33.217 286 159 6 10 285 4 267 1.51e-37 135
MS.gene93630.t1 MTR_1g111280 33.465 254 138 9 48 285 52 290 4.57e-36 132
MS.gene93630.t1 MTR_3g101420 30.769 247 144 5 49 285 34 263 3.98e-30 115
MS.gene93630.t1 MTR_4g086510 32.883 222 118 5 49 256 35 239 8.05e-30 115
MS.gene93630.t1 MTR_4g086480 30.864 243 148 4 49 285 39 267 1.01e-29 115
MS.gene93630.t1 MTR_7g056207 32.719 217 125 4 49 256 67 271 1.26e-29 115
MS.gene93630.t1 MTR_4g086540 33.854 192 112 4 31 220 30 208 3.39e-29 113
MS.gene93630.t1 MTR_3g012440 31.746 252 150 3 48 285 41 284 3.39e-29 114
MS.gene93630.t1 MTR_6g022710 34.300 207 99 3 91 260 156 362 1.03e-28 114
MS.gene93630.t1 MTR_4g086470 30.453 243 149 4 49 285 38 266 2.33e-27 108
MS.gene93630.t1 MTR_6g065470 36.257 171 77 3 7 159 6 162 4.23e-25 98.6
MS.gene93630.t1 MTR_5g005920 28.409 264 167 8 31 284 25 276 5.78e-25 102
MS.gene93630.t1 MTR_3g450680 29.365 252 140 7 53 285 48 280 1.10e-24 101
MS.gene93630.t1 MTR_5g005900 27.737 274 160 11 31 285 21 275 3.62e-22 94.7
MS.gene93630.t1 MTR_1g105020 27.106 273 160 9 31 285 20 271 5.17e-22 94.0
MS.gene93630.t1 MTR_8g040860 26.642 274 154 9 31 283 28 275 6.27e-22 94.0
MS.gene93630.t1 MTR_5g005850 29.268 246 148 7 53 285 45 277 2.10e-21 92.4
MS.gene93630.t1 MTR_1g104930 30.576 278 148 9 23 281 16 267 6.22e-21 91.3
MS.gene93630.t1 MTR_7g051020 31.452 248 145 7 48 283 38 272 3.76e-19 86.3
MS.gene93630.t1 MTR_1g104933 30.932 236 134 6 59 283 46 263 3.19e-17 80.5
MS.gene93630.t1 MTR_6g065480 55.556 54 23 1 235 288 3 55 8.86e-16 70.5
MS.gene93630.t1 MTR_0007s0480 39.394 99 51 3 171 264 1 95 1.47e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93630.t1 AT5G23530 54.225 284 112 4 10 289 13 282 1.11e-111 326
MS.gene93630.t1 AT5G27320 43.310 284 155 2 7 287 13 293 3.24e-74 231
MS.gene93630.t1 AT3G63010 40.956 293 163 3 1 287 7 295 6.64e-71 223
MS.gene93630.t1 AT3G05120 40.909 286 161 2 7 287 13 295 1.61e-67 214
MS.gene93630.t1 AT5G62180 38.403 263 152 6 32 288 21 279 5.41e-54 178
MS.gene93630.t1 AT2G45600 33.607 244 139 4 58 288 38 271 2.80e-45 156
MS.gene93630.t1 AT2G45610 34.211 266 158 5 32 288 22 279 2.77e-44 153
MS.gene93630.t1 AT1G68620 37.872 235 130 5 56 285 57 280 5.57e-44 152
MS.gene93630.t1 AT5G16080 36.032 247 134 6 48 283 54 287 1.84e-41 146
MS.gene93630.t1 AT5G06570 38.912 239 126 5 60 288 50 278 9.74e-36 131
MS.gene93630.t1 AT5G06570 38.912 239 126 5 60 288 50 278 9.74e-36 131
MS.gene93630.t1 AT5G06570 39.331 239 125 5 60 288 65 293 1.03e-35 131
MS.gene93630.t1 AT5G06570 39.331 239 125 5 60 288 65 293 1.03e-35 131
MS.gene93630.t1 AT1G19190 32.824 262 149 8 31 283 17 260 2.75e-35 129
MS.gene93630.t1 AT3G48700 31.873 251 146 6 49 284 32 272 1.08e-31 120
MS.gene93630.t1 AT3G48690 32.540 252 139 6 49 284 32 268 2.25e-31 119
MS.gene93630.t1 AT5G14310 33.617 235 115 3 92 285 148 382 4.41e-31 120
MS.gene93630.t1 AT1G47480 29.710 276 162 6 9 283 12 256 1.98e-30 116
MS.gene93630.t1 AT2G03550 33.610 241 135 6 49 281 32 255 7.13e-30 115
MS.gene93630.t1 AT3G27320 28.302 318 148 7 47 285 48 364 1.67e-28 113
MS.gene93630.t1 AT3G27320 30.627 271 138 6 56 285 135 396 1.20e-27 111
MS.gene93630.t1 AT1G49640 32.275 189 118 5 30 217 17 196 1.29e-25 103
MS.gene93630.t1 AT1G49660 31.381 239 148 6 53 284 36 265 1.49e-24 100
MS.gene93630.t1 AT1G49650 30.508 236 147 6 53 281 92 317 6.73e-23 97.4

Find 100 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGGAGGATTTGTCGGGTT+TGG 0.228528 6.2:+70579845 MS.gene93630:CDS
ACCCAATAACCCGGATATTC+TGG 0.265541 6.2:-70579656 None:intergenic
GACAGGAAGGGAGGTTGTTT+TGG 0.266002 6.2:-70579331 None:intergenic
AGATAGCGCCGGTGGAAATT+TGG 0.269758 6.2:+70579596 MS.gene93630:CDS
CTCCAGAATATCCGGGTTAT+TGG 0.291274 6.2:+70579654 MS.gene93630:CDS
CTCTTTACTCCCACTGTTGC+CGG 0.296074 6.2:+70579282 MS.gene93630:CDS
CTTCCAAGGAAGAAGGGGTT+TGG 0.297350 6.2:-70579079 None:intergenic
AGCGTTAACGGTAACGTCTT+TGG 0.321214 6.2:-70579238 None:intergenic
GCGGTTAGGGCTTGCAAAGC+GGG 0.337635 6.2:+70579630 MS.gene93630:CDS
GGCACACCATGTTGCGGTTA+GGG 0.353563 6.2:+70579617 MS.gene93630:CDS
GGTTTGATCCTTTGATTGAT+TGG 0.363142 6.2:+70579898 MS.gene93630:CDS
TGGCACACCATGTTGCGGTT+AGG 0.375335 6.2:+70579616 MS.gene93630:CDS
AACCCAAACCCCTTCTTCCT+TGG 0.375869 6.2:+70579076 MS.gene93630:CDS
CGACGACAGCAGAGATTTCC+CGG 0.388643 6.2:-70579434 None:intergenic
TCCAGAATATCCGGGTTATT+GGG 0.394293 6.2:+70579655 MS.gene93630:CDS
AAGCGGGGCTCCAGAATATC+CGG 0.405006 6.2:+70579646 MS.gene93630:CDS
CCGTTAACGGGAGTGGTGTT+AGG 0.405213 6.2:-70579207 None:intergenic
TTCCAAGGAAGAAGGGGTTT+GGG 0.406480 6.2:-70579078 None:intergenic
GCCGAACGCGGAGGATTTGT+CGG 0.420668 6.2:+70579839 MS.gene93630:CDS
TTTGGTGGAAACGCCGTTAA+CGG 0.432566 6.2:-70579220 None:intergenic
CCCGACAAATCCTCCGCGTT+CGG 0.434640 6.2:-70579840 None:intergenic
CCTAACACCACTCCCGTTAA+CGG 0.435553 6.2:+70579207 MS.gene93630:CDS
GTCCTTGCCACCGACATAAA+CGG 0.448314 6.2:-70579747 None:intergenic
TTTGACAAGTCAGCATTTCC+CGG 0.449205 6.2:-70579558 None:intergenic
CCGAACGCGGAGGATTTGTC+GGG 0.451420 6.2:+70579840 MS.gene93630:CDS
TTGGTGGAAACGCCGTTAAC+GGG 0.454826 6.2:-70579219 None:intergenic
TTTGTCGGGTTTGGATTATC+CGG 0.455467 6.2:+70579854 MS.gene93630:CDS
TAAAACTGTAAGAAGTGAAA+TGG 0.461001 6.2:-70579112 None:intergenic
TTAACGCTGAAAATAACGTT+TGG 0.461518 6.2:+70579253 MS.gene93630:CDS
TGTCGGTGGCAAGGACTGAT+TGG 0.468315 6.2:+70579754 MS.gene93630:CDS
CATGGCGCGGTTAATGTATG+TGG 0.473762 6.2:+70579816 MS.gene93630:CDS
GAGGGATCGGACCGGGATCA+TGG 0.475304 6.2:+70579798 MS.gene93630:CDS
ATATTGATCCAACCGTTCTT+CGG 0.477926 6.2:+70579681 MS.gene93630:CDS
AGGAGAAGAACGGACGGAGG+CGG 0.478435 6.2:+70579704 MS.gene93630:CDS
CGCGGACCTTCCAAGGAAGA+AGG 0.480629 6.2:-70579086 None:intergenic
CGTTCTTCTCCTCCGAAGAA+CGG 0.480969 6.2:-70579693 None:intergenic
TTTGGTGGAACCACCATCTC+CGG 0.486902 6.2:-70579313 None:intergenic
CTTTGATTGATTGGCAAAAG+AGG 0.488937 6.2:+70579907 MS.gene93630:CDS
CTTCTCCTCCGAAGAACGGT+TGG 0.489442 6.2:-70579689 None:intergenic
AGGCGGAGATTCATCTAGTT+GGG 0.501879 6.2:+70579721 MS.gene93630:CDS
CGGTTTGTCGTAGACTCTGC+CGG 0.505183 6.2:+70579415 MS.gene93630:CDS
GAGGCGGAGATTCATCTAGT+TGG 0.506923 6.2:+70579720 MS.gene93630:CDS
ATGGTAGCGCGGACCTTCCA+AGG 0.517263 6.2:-70579093 None:intergenic
TGCGACGGATAGCGATGCTC+TGG 0.519802 6.2:-70579480 None:intergenic
ATTTCCACCGGCGCTATCTC+CGG 0.529772 6.2:-70579592 None:intergenic
GGAAACGCCGTTAACGGGAG+TGG 0.530325 6.2:-70579214 None:intergenic
CATTAACCGCGCCATGATCC+CGG 0.530924 6.2:-70579809 None:intergenic
TTGTCAAAATGTTTCCTAGC+CGG 0.531131 6.2:+70579573 MS.gene93630:CDS
GCCGGAGAAGTCACCGGAGA+TGG 0.534767 6.2:+70579300 MS.gene93630:CDS
GCGGACCTTCCAAGGAAGAA+GGG 0.545035 6.2:-70579085 None:intergenic
TTTACCGGAGGGATCGGACC+GGG 0.545728 6.2:+70579791 MS.gene93630:CDS
AACCGCGTCGTAGAGGATTG+AGG 0.545886 6.2:-70579397 None:intergenic
GGTGACTTCTCCGGCAACAG+TGG 0.548822 6.2:-70579292 None:intergenic
CAAACCCCTTCTTCCTTGGA+AGG 0.548828 6.2:+70579080 MS.gene93630:CDS
TGATCCCGGTCCGATCCCTC+CGG 0.553708 6.2:-70579795 None:intergenic
AGTTGGGATGCCGTTTATGT+CGG 0.556184 6.2:+70579737 MS.gene93630:CDS
GTTAAAGAGACAGCGGTTGA+CGG 0.560255 6.2:-70579163 None:intergenic
TGCGGTTAGGGCTTGCAAAG+CGG 0.562566 6.2:+70579629 MS.gene93630:CDS
TGCCGTTTATGTCGGTGGCA+AGG 0.565445 6.2:+70579745 MS.gene93630:CDS
TGGGATGCCGTTTATGTCGG+TGG 0.565563 6.2:+70579740 MS.gene93630:CDS
ACCATCTCCGGTGACTTCTC+CGG 0.568498 6.2:-70579301 None:intergenic
GTGACTTCTCCGGCAACAGT+GGG 0.568706 6.2:-70579291 None:intergenic
CGGTTAGGGCTTGCAAAGCG+GGG 0.572111 6.2:+70579631 MS.gene93630:CDS
ACTGTTGCCGGAGAAGTCAC+CGG 0.572191 6.2:+70579294 MS.gene93630:CDS
TACGACAAACCGCGTCGTAG+AGG 0.579710 6.2:-70579404 None:intergenic
CCGTGGAAGAAAATGATGAC+AGG 0.580978 6.2:-70579348 None:intergenic
TGGCAAGGACTGATTGGATG+TGG 0.582609 6.2:+70579760 MS.gene93630:CDS
GATGCTTCATGTCGCTCTAA+CGG 0.583341 6.2:+70579138 MS.gene93630:CDS
GGTTTGTCGTAGACTCTGCC+GGG 0.585753 6.2:+70579416 MS.gene93630:CDS
GAAAATGATGACAGGAAGGG+AGG 0.591882 6.2:-70579340 None:intergenic
GGAAGAAAATGATGACAGGA+AGG 0.592101 6.2:-70579344 None:intergenic
AACGGGAGTGGTGTTAGGTG+AGG 0.594957 6.2:-70579202 None:intergenic
GTTAACGGTAACGTCTTTGG+TGG 0.595706 6.2:-70579235 None:intergenic
CACCGGCGCTATCTCCGGCT+AGG 0.596783 6.2:-70579587 None:intergenic
AGCGGGGCTCCAGAATATCC+GGG 0.603800 6.2:+70579647 MS.gene93630:CDS
GGAGAAGTCACCGGAGATGG+TGG 0.603928 6.2:+70579303 MS.gene93630:CDS
CTAGCCGGAGATAGCGCCGG+TGG 0.609370 6.2:+70579588 MS.gene93630:CDS
AAATTTGGCACACCATGTTG+CGG 0.611772 6.2:+70579611 MS.gene93630:CDS
TTGATCCAACCGTTCTTCGG+AGG 0.612628 6.2:+70579684 MS.gene93630:CDS
ATGGTGTGCCAAATTTCCAC+CGG 0.614422 6.2:-70579604 None:intergenic
ATGGCGCGGTTAATGTATGT+GGG 0.615269 6.2:+70579817 MS.gene93630:CDS
TCTCCGTCTTCATATTGCGA+CGG 0.615711 6.2:-70579495 None:intergenic
CGGACCTTCCAAGGAAGAAG+GGG 0.620041 6.2:-70579084 None:intergenic
TGCAAGCCCTAACCGCAACA+TGG 0.630176 6.2:-70579623 None:intergenic
GAAAAGTGAAGCCACCGCCG+TGG 0.637720 6.2:-70579365 None:intergenic
TCAATATTGACCCAATAACC+CGG 0.637760 6.2:-70579665 None:intergenic
CGAAGAAGTTAAAGAGACAG+CGG 0.642287 6.2:-70579170 None:intergenic
TAATGTATGTGGGCCGAACG+CGG 0.643618 6.2:+70579827 MS.gene93630:CDS
AGCGATGCTCTGGTGCAAGT+CGG 0.647802 6.2:-70579470 None:intergenic
ATCGGACCGGGATCATGGCG+CGG 0.650554 6.2:+70579803 MS.gene93630:CDS
GAAGAAAATGATGACAGGAA+GGG 0.651353 6.2:-70579343 None:intergenic
CAACAGTGGGAGTAAAGAGA+CGG 0.651964 6.2:-70579278 None:intergenic
CGTTCTTCGGAGGAGAAGAA+CGG 0.653860 6.2:+70579694 MS.gene93630:CDS
CTTCGGAGGAGAAGAACGGA+CGG 0.656110 6.2:+70579698 MS.gene93630:CDS
TATCCGTCGCAATATGAAGA+CGG 0.658300 6.2:+70579492 MS.gene93630:CDS
CGGAGGAGAAGAACGGACGG+AGG 0.662414 6.2:+70579701 MS.gene93630:CDS
TTCCTAGCCGGAGATAGCGC+CGG 0.669385 6.2:+70579585 MS.gene93630:CDS
TGTATGTGGGCCGAACGCGG+AGG 0.708115 6.2:+70579830 MS.gene93630:CDS
TAAGAAGTGAAATGGTAGCG+CGG 0.709848 6.2:-70579104 None:intergenic
TTCCTCAATCCTCTACGACG+CGG 0.709865 6.2:+70579395 MS.gene93630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAAAACTGTAAGAAGTGAAA+TGG - chr6.2:70579115-70579134 None:intergenic 25.0%
!! ATGATTGGTTGAAAAAATGT+GGG + chr6.2:70579934-70579953 MS.gene93630:intron 25.0%
!! TATGATTGGTTGAAAAAATG+TGG + chr6.2:70579933-70579952 MS.gene93630:intron 25.0%
GTTGATTGAATATCCAAACA+TGG + chr6.2:70579968-70579987 MS.gene93630:intron 30.0%
TTAACGCTGAAAATAACGTT+TGG + chr6.2:70579253-70579272 MS.gene93630:CDS 30.0%
!! AACGTTATTTTCAGCGTTAA+CGG - chr6.2:70579253-70579272 None:intergenic 30.0%
ATATTGATCCAACCGTTCTT+CGG + chr6.2:70579681-70579700 MS.gene93630:CDS 35.0%
CTTTGATTGATTGGCAAAAG+AGG + chr6.2:70579907-70579926 MS.gene93630:CDS 35.0%
GAAGAAAATGATGACAGGAA+GGG - chr6.2:70579346-70579365 None:intergenic 35.0%
GGTTTGATCCTTTGATTGAT+TGG + chr6.2:70579898-70579917 MS.gene93630:CDS 35.0%
TCAATATTGACCCAATAACC+CGG - chr6.2:70579668-70579687 None:intergenic 35.0%
TTGTCAAAATGTTTCCTAGC+CGG + chr6.2:70579573-70579592 MS.gene93630:CDS 35.0%
! CTCTTTTGCCAATCAATCAA+AGG - chr6.2:70579909-70579928 None:intergenic 35.0%
! TGAAAAGCATGAACCATGTT+TGG - chr6.2:70579984-70580003 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.2:70579919-70579938 MS.gene93630:intron 35.0%
!!! ATACGCTTGTTTTTGTTGGT+GGG + chr6.2:70579877-70579896 MS.gene93630:CDS 35.0%
!!! GATGTGGAAAGTGTTTTTAC+CGG + chr6.2:70579776-70579795 MS.gene93630:CDS 35.0%
AAATTTGGCACACCATGTTG+CGG + chr6.2:70579611-70579630 MS.gene93630:CDS 40.0%
CCAACAAAAACAAGCGTATC+CGG - chr6.2:70579876-70579895 None:intergenic 40.0%
CGAAGAAGTTAAAGAGACAG+CGG - chr6.2:70579173-70579192 None:intergenic 40.0%
GGAAGAAAATGATGACAGGA+AGG - chr6.2:70579347-70579366 None:intergenic 40.0%
TATCCGTCGCAATATGAAGA+CGG + chr6.2:70579492-70579511 MS.gene93630:CDS 40.0%
TCCAGAATATCCGGGTTATT+GGG + chr6.2:70579655-70579674 MS.gene93630:CDS 40.0%
TTTGACAAGTCAGCATTTCC+CGG - chr6.2:70579561-70579580 None:intergenic 40.0%
TTTGTCGGGTTTGGATTATC+CGG + chr6.2:70579854-70579873 MS.gene93630:CDS 40.0%
! CCTGTCATCATTTTCTTCCA+CGG + chr6.2:70579348-70579367 MS.gene93630:CDS 40.0%
! CGAGAACGTAACAGTTTTAC+CGG + chr6.2:70579539-70579558 MS.gene93630:CDS 40.0%
! GAGAACGTAACAGTTTTACC+GGG + chr6.2:70579540-70579559 MS.gene93630:CDS 40.0%
! TAAGAAGTGAAATGGTAGCG+CGG - chr6.2:70579107-70579126 None:intergenic 40.0%
!!! GATACGCTTGTTTTTGTTGG+TGG + chr6.2:70579876-70579895 MS.gene93630:CDS 40.0%
!!! TGGAAAGTGTTTTTACCGGA+GGG + chr6.2:70579780-70579799 MS.gene93630:CDS 40.0%
ACCCAATAACCCGGATATTC+TGG - chr6.2:70579659-70579678 None:intergenic 45.0%
AGCGTTAACGGTAACGTCTT+TGG - chr6.2:70579241-70579260 None:intergenic 45.0%
AGGCGGAGATTCATCTAGTT+GGG + chr6.2:70579721-70579740 MS.gene93630:CDS 45.0%
ATGGCGCGGTTAATGTATGT+GGG + chr6.2:70579817-70579836 MS.gene93630:CDS 45.0%
ATGGTGTGCCAAATTTCCAC+CGG - chr6.2:70579607-70579626 None:intergenic 45.0%
CAACAGTGGGAGTAAAGAGA+CGG - chr6.2:70579281-70579300 None:intergenic 45.0%
CCGTGGAAGAAAATGATGAC+AGG - chr6.2:70579351-70579370 None:intergenic 45.0%
CTCCAGAATATCCGGGTTAT+TGG + chr6.2:70579654-70579673 MS.gene93630:CDS 45.0%
GAAAATGATGACAGGAAGGG+AGG - chr6.2:70579343-70579362 None:intergenic 45.0%
GATGCTTCATGTCGCTCTAA+CGG + chr6.2:70579138-70579157 MS.gene93630:CDS 45.0%
GTTAAAGAGACAGCGGTTGA+CGG - chr6.2:70579166-70579185 None:intergenic 45.0%
GTTAACGGTAACGTCTTTGG+TGG - chr6.2:70579238-70579257 None:intergenic 45.0%
TCTCCGTCTTCATATTGCGA+CGG - chr6.2:70579498-70579517 None:intergenic 45.0%
TTCCAAGGAAGAAGGGGTTT+GGG - chr6.2:70579081-70579100 None:intergenic 45.0%
TTTGGTGGAAACGCCGTTAA+CGG - chr6.2:70579223-70579242 None:intergenic 45.0%
! AGTTGGGATGCCGTTTATGT+CGG + chr6.2:70579737-70579756 MS.gene93630:CDS 45.0%
! GTCATCATTTTCTTCCACGG+CGG + chr6.2:70579351-70579370 MS.gene93630:CDS 45.0%
!! AGTGTTTTTACCGGAGGGAT+CGG + chr6.2:70579785-70579804 MS.gene93630:CDS 45.0%
!!! CCGGATACGCTTGTTTTTGT+TGG + chr6.2:70579873-70579892 MS.gene93630:CDS 45.0%
!!! GTGGAAAGTGTTTTTACCGG+AGG + chr6.2:70579779-70579798 MS.gene93630:CDS 45.0%
AACCCAAACCCCTTCTTCCT+TGG + chr6.2:70579076-70579095 MS.gene93630:CDS 50.0%
CAAACCCCTTCTTCCTTGGA+AGG + chr6.2:70579080-70579099 MS.gene93630:CDS 50.0%
CATGGCGCGGTTAATGTATG+TGG + chr6.2:70579816-70579835 MS.gene93630:CDS 50.0%
CCTAACACCACTCCCGTTAA+CGG + chr6.2:70579207-70579226 MS.gene93630:CDS 50.0%
CGTTCTTCGGAGGAGAAGAA+CGG + chr6.2:70579694-70579713 MS.gene93630:CDS 50.0%
CGTTCTTCTCCTCCGAAGAA+CGG - chr6.2:70579696-70579715 None:intergenic 50.0%
CTCTTTACTCCCACTGTTGC+CGG + chr6.2:70579282-70579301 MS.gene93630:CDS 50.0%
CTTCCAAGGAAGAAGGGGTT+TGG - chr6.2:70579082-70579101 None:intergenic 50.0%
GAGGCGGAGATTCATCTAGT+TGG + chr6.2:70579720-70579739 MS.gene93630:CDS 50.0%
GTCCTTGCCACCGACATAAA+CGG - chr6.2:70579750-70579769 None:intergenic 50.0%
TAATGTATGTGGGCCGAACG+CGG + chr6.2:70579827-70579846 MS.gene93630:CDS 50.0%
TGGCAAGGACTGATTGGATG+TGG + chr6.2:70579760-70579779 MS.gene93630:CDS 50.0%
TTCCTCAATCCTCTACGACG+CGG + chr6.2:70579395-70579414 MS.gene93630:CDS 50.0%
TTGATCCAACCGTTCTTCGG+AGG + chr6.2:70579684-70579703 MS.gene93630:CDS 50.0%
TTGGTGGAAACGCCGTTAAC+GGG - chr6.2:70579222-70579241 None:intergenic 50.0%
TTTGGTGGAACCACCATCTC+CGG - chr6.2:70579316-70579335 None:intergenic 50.0%
! ATCATTTTCTTCCACGGCGG+TGG + chr6.2:70579354-70579373 MS.gene93630:CDS 50.0%
! GACAGGAAGGGAGGTTGTTT+TGG - chr6.2:70579334-70579353 None:intergenic 50.0%
!! AGATAGCGCCGGTGGAAATT+TGG + chr6.2:70579596-70579615 MS.gene93630:CDS 50.0%
!!! AGGAAGGGAGGTTGTTTTGG+TGG - chr6.2:70579331-70579350 None:intergenic 50.0%
AACCGCGTCGTAGAGGATTG+AGG - chr6.2:70579400-70579419 None:intergenic 55.0%
AAGCGGGGCTCCAGAATATC+CGG + chr6.2:70579646-70579665 MS.gene93630:CDS 55.0%
ACCATCTCCGGTGACTTCTC+CGG - chr6.2:70579304-70579323 None:intergenic 55.0%
ACTGTTGCCGGAGAAGTCAC+CGG + chr6.2:70579294-70579313 MS.gene93630:CDS 55.0%
AGCGATGCTCTGGTGCAAGT+CGG - chr6.2:70579473-70579492 None:intergenic 55.0%
ATTTCCACCGGCGCTATCTC+CGG - chr6.2:70579595-70579614 None:intergenic 55.0%
CATTAACCGCGCCATGATCC+CGG - chr6.2:70579812-70579831 None:intergenic 55.0%
CCGTTAACGGGAGTGGTGTT+AGG - chr6.2:70579210-70579229 None:intergenic 55.0%
CGACGACAGCAGAGATTTCC+CGG - chr6.2:70579437-70579456 None:intergenic 55.0%
CGGACCTTCCAAGGAAGAAG+GGG - chr6.2:70579087-70579106 None:intergenic 55.0%
CGGTTTGTCGTAGACTCTGC+CGG + chr6.2:70579415-70579434 MS.gene93630:CDS 55.0%
CTTCGGAGGAGAAGAACGGA+CGG + chr6.2:70579698-70579717 MS.gene93630:CDS 55.0%
CTTCTCCTCCGAAGAACGGT+TGG - chr6.2:70579692-70579711 None:intergenic 55.0%
GCGGACCTTCCAAGGAAGAA+GGG - chr6.2:70579088-70579107 None:intergenic 55.0%
GGCACACCATGTTGCGGTTA+GGG + chr6.2:70579617-70579636 MS.gene93630:CDS 55.0%
GGTTTGTCGTAGACTCTGCC+GGG + chr6.2:70579416-70579435 MS.gene93630:CDS 55.0%
GTGACTTCTCCGGCAACAGT+GGG - chr6.2:70579294-70579313 None:intergenic 55.0%
TACGACAAACCGCGTCGTAG+AGG - chr6.2:70579407-70579426 None:intergenic 55.0%
TGCAAGCCCTAACCGCAACA+TGG - chr6.2:70579626-70579645 None:intergenic 55.0%
TGCGGTTAGGGCTTGCAAAG+CGG + chr6.2:70579629-70579648 MS.gene93630:CDS 55.0%
TGGCACACCATGTTGCGGTT+AGG + chr6.2:70579616-70579635 MS.gene93630:CDS 55.0%
TGTCGGTGGCAAGGACTGAT+TGG + chr6.2:70579754-70579773 MS.gene93630:CDS 55.0%
! AACGGGAGTGGTGTTAGGTG+AGG - chr6.2:70579205-70579224 None:intergenic 55.0%
! TGCCGTTTATGTCGGTGGCA+AGG + chr6.2:70579745-70579764 MS.gene93630:CDS 55.0%
! TGGGATGCCGTTTATGTCGG+TGG + chr6.2:70579740-70579759 MS.gene93630:CDS 55.0%
! TTTTACCGGAGGGATCGGAC+CGG + chr6.2:70579790-70579809 MS.gene93630:CDS 55.0%
AGCGGGGCTCCAGAATATCC+GGG + chr6.2:70579647-70579666 MS.gene93630:CDS 60.0%
AGGAGAAGAACGGACGGAGG+CGG + chr6.2:70579704-70579723 MS.gene93630:CDS 60.0%
CCCGACAAATCCTCCGCGTT+CGG - chr6.2:70579843-70579862 None:intergenic 60.0%
CCGAACGCGGAGGATTTGTC+GGG + chr6.2:70579840-70579859 MS.gene93630:CDS 60.0%
CGCGGACCTTCCAAGGAAGA+AGG - chr6.2:70579089-70579108 None:intergenic 60.0%
CGCGGAGGATTTGTCGGGTT+TGG + chr6.2:70579845-70579864 MS.gene93630:CDS 60.0%
CGGTTAGGGCTTGCAAAGCG+GGG + chr6.2:70579631-70579650 MS.gene93630:CDS 60.0%
GAAAAGTGAAGCCACCGCCG+TGG - chr6.2:70579368-70579387 None:intergenic 60.0%
GCCGAACGCGGAGGATTTGT+CGG + chr6.2:70579839-70579858 MS.gene93630:CDS 60.0%
GCGGTTAGGGCTTGCAAAGC+GGG + chr6.2:70579630-70579649 MS.gene93630:CDS 60.0%
GGAAACGCCGTTAACGGGAG+TGG - chr6.2:70579217-70579236 None:intergenic 60.0%
GGAGAAGTCACCGGAGATGG+TGG + chr6.2:70579303-70579322 MS.gene93630:CDS 60.0%
GGTGACTTCTCCGGCAACAG+TGG - chr6.2:70579295-70579314 None:intergenic 60.0%
TGCGACGGATAGCGATGCTC+TGG - chr6.2:70579483-70579502 None:intergenic 60.0%
TTCCTAGCCGGAGATAGCGC+CGG + chr6.2:70579585-70579604 MS.gene93630:CDS 60.0%
TTTACCGGAGGGATCGGACC+GGG + chr6.2:70579791-70579810 MS.gene93630:CDS 60.0%
! ATGGTAGCGCGGACCTTCCA+AGG - chr6.2:70579096-70579115 None:intergenic 60.0%
ATCGGACCGGGATCATGGCG+CGG + chr6.2:70579803-70579822 MS.gene93630:CDS 65.0%
CGGAGGAGAAGAACGGACGG+AGG + chr6.2:70579701-70579720 MS.gene93630:CDS 65.0%
GAGGGATCGGACCGGGATCA+TGG + chr6.2:70579798-70579817 MS.gene93630:CDS 65.0%
GCCGGAGAAGTCACCGGAGA+TGG + chr6.2:70579300-70579319 MS.gene93630:CDS 65.0%
TGATCCCGGTCCGATCCCTC+CGG - chr6.2:70579798-70579817 None:intergenic 65.0%
TGTATGTGGGCCGAACGCGG+AGG + chr6.2:70579830-70579849 MS.gene93630:CDS 65.0%
CACCGGCGCTATCTCCGGCT+AGG - chr6.2:70579590-70579609 None:intergenic 70.0%
! CTAGCCGGAGATAGCGCCGG+TGG + chr6.2:70579588-70579607 MS.gene93630:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 70579063 70580029 70579063 ID=MS.gene93630
chr6.2 mRNA 70579063 70580029 70579063 ID=MS.gene93630.t1;Parent=MS.gene93630
chr6.2 exon 70579063 70579928 70579063 ID=MS.gene93630.t1.exon1;Parent=MS.gene93630.t1
chr6.2 CDS 70579063 70579928 70579063 ID=cds.MS.gene93630.t1;Parent=MS.gene93630.t1
chr6.2 exon 70580026 70580029 70580026 ID=MS.gene93630.t1.exon2;Parent=MS.gene93630.t1
chr6.2 CDS 70580026 70580029 70580026 ID=cds.MS.gene93630.t1;Parent=MS.gene93630.t1
Gene Sequence

>MS.gene93630

ATGTCGACAAACAAACCCAAACCCCTTCTTCCTTGGAAGGTCCGCGCTACCATTTCACTTCTTACAGTTTTAACAGATGCTTCATGTCGCTCTAACGGCACCGTCAACCGCTGTCTCTTTAACTTCTTCGATCTCAAATCCTCACCTAACACCACTCCCGTTAACGGCGTTTCCACCAAAGACGTTACCGTTAACGCTGAAAATAACGTTTGGTTCCGTCTCTTTACTCCCACTGTTGCCGGAGAAGTCACCGGAGATGGTGGTTCCACCAAAACAACCTCCCTTCCTGTCATCATTTTCTTCCACGGCGGTGGCTTCACTTTTCTTTCTTCTTCCTCAATCCTCTACGACGCGGTTTGTCGTAGACTCTGCCGGGAAATCTCTGCTGTCGTCGTCTCAGTCAACTACCGACTTGCACCAGAGCATCGCTATCCGTCGCAATATGAAGACGGAGAAGAAGTTCTGAGATTTCTTGACGAGAACGTAACAGTTTTACCGGGAAATGCTGACTTGTCAAAATGTTTCCTAGCCGGAGATAGCGCCGGTGGAAATTTGGCACACCATGTTGCGGTTAGGGCTTGCAAAGCGGGGCTCCAGAATATCCGGGTTATTGGGTCAATATTGATCCAACCGTTCTTCGGAGGAGAAGAACGGACGGAGGCGGAGATTCATCTAGTTGGGATGCCGTTTATGTCGGTGGCAAGGACTGATTGGATGTGGAAAGTGTTTTTACCGGAGGGATCGGACCGGGATCATGGCGCGGTTAATGTATGTGGGCCGAACGCGGAGGATTTGTCGGGTTTGGATTATCCGGATACGCTTGTTTTTGTTGGTGGGTTTGATCCTTTGATTGATTGGCAAAAGAGGTATTATGATTGGTTGAAAAAATGTGGGAAAAAAGCTGAGTTGATTGAATATCCAAACATGGTTCATGCTTTTCATGTTTTTCCTGAATCTACTCAGTTGA
Protein sequence

>MS.gene93630.t1

MSTNKPKPLLPWKVRATISLLTVLTDASCRSNGTVNRCLFNFFDLKSSPNTTPVNGVSTKDVTVNAENNVWFRLFTPTVAGEVTGDGGSTKTTSLPVIIFFHGGGFTFLSSSSILYDAVCRRLCREISAVVVSVNYRLAPEHRYPSQYEDGEEVLRFLDENVTVLPGNADLSKCFLAGDSAGGNLAHHVAVRACKAGLQNIRVIGSILIQPFFGGEERTEAEIHLVGMPFMSVARTDWMWKVFLPEGSDRDHGAVNVCGPNAEDLSGLDYPDTLVFVGGFDPLIDWQKS