AlfalfaGEDB | MS.gene93630

M. sativa cultivar XinJiangDaYe / MS.gene93630

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF07859.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93630.t1	RHN52149.1	93.1	288	20	0	1	288	555	842	2.30E-155	558.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93630.t1	Q9LT10	54.0	287	114	4	7	289	10	282	8.8e-87	321.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93630.t1	G7KP81	93.1	288	20	0	1	288	1	288	1.7e-155	558.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene018032	MS.gene93630	PPI
MS.gene04666	MS.gene93630	PPI
MS.gene44055	MS.gene93630	PPI
MS.gene91548	MS.gene93630	PPI
MS.gene93630	MS.gene005188	PPI
MS.gene93630	MS.gene52621	PPI
MS.gene93630	MS.gene21543	PPI
MS.gene93630	MS.gene055956	PPI
MS.gene93630	MS.gene52704	PPI
MS.gene93630	MS.gene005657	PPI

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93630.t1	MTR_6g065400	93.056	288	20	0	1	288	1	288	0.0	556
MS.gene93630.t1	MTR_6g065370	92.014	288	23	0	1	288	1	288	0.0	551
MS.gene93630.t1	MTR_6g065270	79.649	285	54	1	8	288	6	290	3.06e-171	477
MS.gene93630.t1	MTR_6g065120	77.083	288	65	1	2	288	3	290	1.62e-166	465
MS.gene93630.t1	MTR_6g065340	77.003	287	50	1	2	288	13	283	2.68e-153	432
MS.gene93630.t1	MTR_6g065110	71.127	284	82	0	5	288	6	289	4.44e-152	429
MS.gene93630.t1	MTR_6g065430	59.155	284	107	2	7	288	6	282	4.71e-119	345
MS.gene93630.t1	MTR_1g089310	43.151	292	157	3	1	287	7	294	6.15e-76	235
MS.gene93630.t1	MTR_1g089310	43.151	292	157	3	1	287	23	310	8.91e-76	235
MS.gene93630.t1	MTR_1g082210	41.581	291	163	2	1	287	7	294	6.16e-74	230

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93630.t1	AT5G23530	54.225	284	112	4	10	289	13	282	1.11e-111	326
MS.gene93630.t1	AT5G27320	43.310	284	155	2	7	287	13	293	3.24e-74	231
MS.gene93630.t1	AT3G63010	40.956	293	163	3	1	287	7	295	6.64e-71	223
MS.gene93630.t1	AT3G05120	40.909	286	161	2	7	287	13	295	1.61e-67	214
MS.gene93630.t1	AT5G62180	38.403	263	152	6	32	288	21	279	5.41e-54	178
MS.gene93630.t1	AT2G45600	33.607	244	139	4	58	288	38	271	2.80e-45	156
MS.gene93630.t1	AT2G45610	34.211	266	158	5	32	288	22	279	2.77e-44	153
MS.gene93630.t1	AT1G68620	37.872	235	130	5	56	285	57	280	5.57e-44	152
MS.gene93630.t1	AT5G16080	36.032	247	134	6	48	283	54	287	1.84e-41	146
MS.gene93630.t1	AT5G06570	38.912	239	126	5	60	288	50	278	9.74e-36	131

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Find 100 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGCACACCATGTTG+CGG	0.611772	6.2:+70579611	MS.gene93630:CDS
AACCCAAACCCCTTCTTCCT+TGG	0.375869	6.2:+70579076	MS.gene93630:CDS
AACCGCGTCGTAGAGGATTG+AGG	0.545886	6.2:-70579397	None:intergenic
AACGGGAGTGGTGTTAGGTG+AGG	0.594957	6.2:-70579202	None:intergenic
AAGCGGGGCTCCAGAATATC+CGG	0.405006	6.2:+70579646	MS.gene93630:CDS
ACCATCTCCGGTGACTTCTC+CGG	0.568498	6.2:-70579301	None:intergenic
ACCCAATAACCCGGATATTC+TGG	0.265541	6.2:-70579656	None:intergenic
ACTGTTGCCGGAGAAGTCAC+CGG	0.572191	6.2:+70579294	MS.gene93630:CDS
AGATAGCGCCGGTGGAAATT+TGG	0.269758	6.2:+70579596	MS.gene93630:CDS
AGCGATGCTCTGGTGCAAGT+CGG	0.647802	6.2:-70579470	None:intergenic

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTGATTGAATATCCAAACA+TGG	+	chr6.2:70579968-70579987	MS.gene93630:intron	30.0%
TTAACGCTGAAAATAACGTT+TGG	+	chr6.2:70579253-70579272	MS.gene93630:CDS	30.0%
ATATTGATCCAACCGTTCTT+CGG	+	chr6.2:70579681-70579700	MS.gene93630:CDS	35.0%
CTTTGATTGATTGGCAAAAG+AGG	+	chr6.2:70579907-70579926	MS.gene93630:CDS	35.0%
GAAGAAAATGATGACAGGAA+GGG	-	chr6.2:70579346-70579365	None:intergenic	35.0%
GGTTTGATCCTTTGATTGAT+TGG	+	chr6.2:70579898-70579917	MS.gene93630:CDS	35.0%
TCAATATTGACCCAATAACC+CGG	-	chr6.2:70579668-70579687	None:intergenic	35.0%
TTGTCAAAATGTTTCCTAGC+CGG	+	chr6.2:70579573-70579592	MS.gene93630:CDS	35.0%
AAATTTGGCACACCATGTTG+CGG	+	chr6.2:70579611-70579630	MS.gene93630:CDS	40.0%
CCAACAAAAACAAGCGTATC+CGG	-	chr6.2:70579876-70579895	None:intergenic	40.0%

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	70579063	70580029	70579063	ID=MS.gene93630
chr6.2	mRNA	70579063	70580029	70579063	ID=MS.gene93630.t1;Parent=MS.gene93630
chr6.2	exon	70579063	70579928	70579063	ID=MS.gene93630.t1.exon1;Parent=MS.gene93630.t1
chr6.2	CDS	70579063	70579928	70579063	ID=cds.MS.gene93630.t1;Parent=MS.gene93630.t1
chr6.2	exon	70580026	70580029	70580026	ID=MS.gene93630.t1.exon2;Parent=MS.gene93630.t1
chr6.2	CDS	70580026	70580029	70580026	ID=cds.MS.gene93630.t1;Parent=MS.gene93630.t1

Gene Sequence

>MS.gene93630

ATGTCGACAAACAAACCCAAACCCCTTCTTCCTTGGAAGGTCCGCGCTACCATTTCACTTCTTACAGTTTTAACAGATGCTTCATGTCGCTCTAACGGCACCGTCAACCGCTGTCTCTTTAACTTCTTCGATCTCAAATCCTCACCTAACACCACTCCCGTTAACGGCGTTTCCACCAAAGACGTTACCGTTAACGCTGAAAATAACGTTTGGTTCCGTCTCTTTACTCCCACTGTTGCCGGAGAAGTCACCGGAGATGGTGGTTCCACCAAAACAACCTCCCTTCCTGTCATCATTTTCTTCCACGGCGGTGGCTTCACTTTTCTTTCTTCTTCCTCAATCCTCTACGACGCGGTTTGTCGTAGACTCTGCCGGGAAATCTCTGCTGTCGTCGTCTCAGTCAACTACCGACTTGCACCAGAGCATCGCTATCCGTCGCAATATGAAGACGGAGAAGAAGTTCTGAGATTTCTTGACGAGAACGTAACAGTTTTACCGGGAAATGCTGACTTGTCAAAATGTTTCCTAGCCGGAGATAGCGCCGGTGGAAATTTGGCACACCATGTTGCGGTTAGGGCTTGCAAAGCGGGGCTCCAGAATATCCGGGTTATTGGGTCAATATTGATCCAACCGTTCTTCGGAGGAGAAGAACGGACGGAGGCGGAGATTCATCTAGTTGGGATGCCGTTTATGTCGGTGGCAAGGACTGATTGGATGTGGAAAGTGTTTTTACCGGAGGGATCGGACCGGGATCATGGCGCGGTTAATGTATGTGGGCCGAACGCGGAGGATTTGTCGGGTTTGGATTATCCGGATACGCTTGTTTTTGTTGGTGGGTTTGATCCTTTGATTGATTGGCAAAAGAGGTATTATGATTGGTTGAAAAAATGTGGGAAAAAAGCTGAGTTGATTGAATATCCAAACATGGTTCATGCTTTTCATGTTTTTCCTGAATCTACTCAGTTGA

Protein sequence

>MS.gene93630.t1

MSTNKPKPLLPWKVRATISLLTVLTDASCRSNGTVNRCLFNFFDLKSSPNTTPVNGVSTKDVTVNAENNVWFRLFTPTVAGEVTGDGGSTKTTSLPVIIFFHGGGFTFLSSSSILYDAVCRRLCREISAVVVSVNYRLAPEHRYPSQYEDGEEVLRFLDENVTVLPGNADLSKCFLAGDSAGGNLAHHVAVRACKAGLQNIRVIGSILIQPFFGGEERTEAEIHLVGMPFMSVARTDWMWKVFLPEGSDRDHGAVNVCGPNAEDLSGLDYPDTLVFVGGFDPLIDWQKS