Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93760.t1 | AEL30895.1 | 84.8 | 388 | 47 | 5 | 1 | 381 | 1 | 383 | 1.70E-161 | 578.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93760.t1 | Q6X7K0 | 38.6 | 402 | 174 | 11 | 1 | 381 | 1 | 350 | 2.2e-37 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93760.t1 | G0ZGT6 | 84.8 | 388 | 47 | 5 | 1 | 381 | 1 | 383 | 1.2e-161 | 578.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93760.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene93760 | 0.810985 | 8.78E-51 | -1.69E-46 |
| MS.gene050100 | MS.gene93760 | 0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene050298 | MS.gene93760 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene050563 | MS.gene93760 | 0.82949 | 5.00E-55 | -1.69E-46 |
| MS.gene050584 | MS.gene93760 | 0.84045 | 8.63E-58 | -1.69E-46 |
| MS.gene050585 | MS.gene93760 | 0.823746 | 1.17E-53 | -1.69E-46 |
| MS.gene050587 | MS.gene93760 | 0.8495 | 3.11E-60 | -1.69E-46 |
| MS.gene05143 | MS.gene93760 | 0.813652 | 2.30E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene93760 | 0.833547 | 5.01E-56 | -1.69E-46 |
| MS.gene052142 | MS.gene93760 | 0.881536 | 2.21E-70 | -1.69E-46 |
| MS.gene052187 | MS.gene93760 | 0.850503 | 1.63E-60 | -1.69E-46 |
| MS.gene052698 | MS.gene93760 | 0.812879 | 3.39E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene93760 | 0.861712 | 8.46E-64 | -1.69E-46 |
| MS.gene053383 | MS.gene93760 | 0.847441 | 1.15E-59 | -1.69E-46 |
| MS.gene05456 | MS.gene93760 | 0.863307 | 2.73E-64 | -1.69E-46 |
| MS.gene054596 | MS.gene93760 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene93760 | 0.870931 | 1.00E-66 | -1.69E-46 |
| MS.gene058168 | MS.gene93760 | 0.848548 | 5.71E-60 | -1.69E-46 |
| MS.gene059006 | MS.gene93760 | 0.883447 | 4.45E-71 | -1.69E-46 |
| MS.gene059632 | MS.gene93760 | 0.829399 | 5.26E-55 | -1.69E-46 |
| MS.gene059768 | MS.gene93760 | 0.813566 | 2.40E-51 | -1.69E-46 |
| MS.gene060691 | MS.gene93760 | 0.806734 | 7.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93760.t1 | MTR_8g107210 | 85.567 | 388 | 19 | 9 | 1 | 381 | 1 | 358 | 0.0 | 625 |
| MS.gene93760.t1 | MTR_8g095580 | 82.500 | 160 | 11 | 4 | 1 | 157 | 1 | 146 | 6.71e-87 | 260 |
| MS.gene93760.t1 | MTR_3g088485 | 80.625 | 160 | 12 | 3 | 1 | 157 | 1 | 144 | 2.90e-82 | 248 |
| MS.gene93760.t1 | MTR_4g084550 | 50.318 | 157 | 61 | 4 | 45 | 194 | 26 | 172 | 2.73e-37 | 133 |
| MS.gene93760.t1 | MTR_7g060630 | 74.627 | 67 | 17 | 0 | 91 | 157 | 6 | 72 | 3.43e-28 | 110 |
| MS.gene93760.t1 | MTR_4g063735 | 63.636 | 77 | 26 | 1 | 93 | 169 | 25 | 99 | 1.08e-26 | 107 |
| MS.gene93760.t1 | MTR_1g019130 | 73.438 | 64 | 17 | 0 | 92 | 155 | 89 | 152 | 1.20e-26 | 106 |
| MS.gene93760.t1 | MTR_1g019130 | 73.438 | 64 | 17 | 0 | 92 | 155 | 89 | 152 | 5.27e-26 | 105 |
| MS.gene93760.t1 | MTR_5g081990 | 71.429 | 63 | 18 | 0 | 93 | 155 | 33 | 95 | 6.19e-26 | 103 |
| MS.gene93760.t1 | MTR_5g021930 | 70.769 | 65 | 18 | 1 | 91 | 154 | 28 | 92 | 6.15e-25 | 103 |
| MS.gene93760.t1 | MTR_7g025010 | 50.000 | 62 | 31 | 0 | 93 | 154 | 47 | 108 | 2.34e-15 | 78.2 |
| MS.gene93760.t1 | MTR_2g015000 | 50.000 | 62 | 31 | 0 | 93 | 154 | 55 | 116 | 2.93e-15 | 77.4 |
| MS.gene93760.t1 | MTR_4g088070 | 45.902 | 61 | 33 | 0 | 93 | 153 | 29 | 89 | 1.02e-13 | 72.4 |
| MS.gene93760.t1 | MTR_7g023810 | 35.106 | 94 | 61 | 0 | 93 | 186 | 68 | 161 | 2.07e-13 | 68.6 |
| MS.gene93760.t1 | MTR_1g115315 | 39.506 | 81 | 47 | 1 | 93 | 171 | 85 | 165 | 1.63e-12 | 67.4 |
| MS.gene93760.t1 | MTR_1g115315 | 39.506 | 81 | 47 | 1 | 93 | 171 | 85 | 165 | 2.15e-12 | 67.0 |
| MS.gene93760.t1 | MTR_4g088080 | 44.262 | 61 | 34 | 0 | 93 | 153 | 40 | 100 | 4.83e-12 | 66.6 |
| MS.gene93760.t1 | MTR_3g115620 | 42.623 | 61 | 35 | 0 | 93 | 153 | 82 | 142 | 6.15e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93760.t1 | AT3G18010 | 36.430 | 409 | 173 | 15 | 1 | 381 | 1 | 350 | 2.90e-60 | 198 |
| MS.gene93760.t1 | AT2G28610 | 71.014 | 69 | 20 | 0 | 89 | 157 | 4 | 72 | 7.86e-29 | 112 |
| MS.gene93760.t1 | AT2G01500 | 56.731 | 104 | 39 | 3 | 46 | 147 | 16 | 115 | 2.67e-28 | 112 |
| MS.gene93760.t1 | AT5G59340 | 61.905 | 84 | 30 | 1 | 86 | 169 | 7 | 88 | 7.79e-28 | 110 |
| MS.gene93760.t1 | AT3G11260 | 52.000 | 100 | 42 | 2 | 82 | 181 | 13 | 106 | 1.95e-26 | 104 |
| MS.gene93760.t1 | AT1G46480 | 69.231 | 65 | 20 | 0 | 91 | 155 | 88 | 152 | 1.15e-25 | 102 |
| MS.gene93760.t1 | AT1G46480 | 41.447 | 152 | 68 | 4 | 92 | 240 | 89 | 222 | 6.96e-25 | 102 |
| MS.gene93760.t1 | AT2G17950 | 69.697 | 66 | 19 | 1 | 90 | 154 | 35 | 100 | 2.28e-24 | 102 |
| MS.gene93760.t1 | AT5G05770 | 59.459 | 74 | 28 | 1 | 91 | 164 | 27 | 98 | 1.44e-23 | 95.1 |
| MS.gene93760.t1 | AT5G45980 | 35.294 | 119 | 68 | 2 | 93 | 211 | 55 | 164 | 3.13e-16 | 79.3 |
| MS.gene93760.t1 | AT2G33880 | 50.000 | 62 | 31 | 0 | 93 | 154 | 55 | 116 | 6.13e-15 | 75.9 |
| MS.gene93760.t1 | AT2G33880 | 50.000 | 62 | 31 | 0 | 93 | 154 | 55 | 116 | 6.48e-15 | 75.9 |
| MS.gene93760.t1 | AT4G35550 | 47.541 | 61 | 32 | 0 | 93 | 153 | 99 | 159 | 7.93e-13 | 68.6 |
| MS.gene93760.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 93 | 183 | 33 | 127 | 2.22e-11 | 62.0 |
| MS.gene93760.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 93 | 183 | 95 | 189 | 4.77e-11 | 62.0 |
| MS.gene93760.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 93 | 183 | 95 | 189 | 5.85e-11 | 62.0 |
Find 82 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCCCAGCTTAGAAATTT+TGG | 0.103457 | 4.2:+278425 | MS.gene93760:CDS |
| CCATGATCTCCATTCCTTAT+TGG | 0.159741 | 4.2:-279982 | None:intergenic |
| ACAGCAAAGAAGAAACTTTA+TGG | 0.180399 | 4.2:+279684 | MS.gene93760:CDS |
| GCCACCATGAATGCGGTTTA+AGG | 0.219928 | 4.2:-278097 | None:intergenic |
| TCATGGGTCTTGATGAGTTT+TGG | 0.224893 | 4.2:-279829 | None:intergenic |
| TCCAGTGCTCTTAACTGTTC+TGG | 0.231980 | 4.2:-278347 | None:intergenic |
| TCTCTGTCTCTTTGTGTTGC+TGG | 0.237936 | 4.2:-280041 | None:intergenic |
| CATGATCTCCATTCCTTATT+GGG | 0.239327 | 4.2:-279981 | None:intergenic |
| TTGTTAGGAGAAGTAGTAGT+AGG | 0.295175 | 4.2:-278054 | None:intergenic |
| GTAATTCTGCTTCATCGAAT+TGG | 0.317991 | 4.2:-279663 | None:intergenic |
| CACAGTAACAACTAGACTTA+TGG | 0.319387 | 4.2:+279804 | MS.gene93760:CDS |
| GTTATAGTTGAAGTGTTGTT+AGG | 0.334243 | 4.2:-278069 | None:intergenic |
| TAAGCTGGGCAGTGATTTGT+TGG | 0.366393 | 4.2:-278415 | None:intergenic |
| ACTGGGACTGGGACTGGTCT+TGG | 0.368417 | 4.2:-278030 | None:intergenic |
| CCTTCCTTAAACCGCATTCA+TGG | 0.383571 | 4.2:+278093 | MS.gene93760:CDS |
| TGTAGTTGATACTGTTTAAG+TGG | 0.391525 | 4.2:-279915 | None:intergenic |
| TTGTAGTAGAGGTGTTTAAG+AGG | 0.411927 | 4.2:-279756 | None:intergenic |
| GCTCTTAACTGTTCTGGTGT+TGG | 0.418756 | 4.2:-278341 | None:intergenic |
| ACGGAAGAAACTCAATAAAC+TGG | 0.421182 | 4.2:-280092 | None:intergenic |
| GCTCTTGAAAAGAAAGACTT+AGG | 0.434053 | 4.2:+278551 | MS.gene93760:CDS |
| GGAATCTGTTTCAATTCAAA+GGG | 0.434967 | 4.2:+279585 | MS.gene93760:intron |
| GAACTCACCACAACTGCTGC+TGG | 0.437507 | 4.2:-278308 | None:intergenic |
| AGGAATCTGTTTCAATTCAA+AGG | 0.438330 | 4.2:+279584 | MS.gene93760:intron |
| CAGCAGTTGTGGTGAGTTCA+AGG | 0.440070 | 4.2:+278312 | MS.gene93760:CDS |
| GTAGGGACTGGGACTGGGAC+TGG | 0.441780 | 4.2:-278036 | None:intergenic |
| AAATGAATAAGTTGAAATCA+TGG | 0.444662 | 4.2:-279846 | None:intergenic |
| GGAGAAGTAGTAGTAGGGAC+TGG | 0.452188 | 4.2:-278048 | None:intergenic |
| CATACTACAACTACAAAGAA+AGG | 0.456924 | 4.2:+279878 | MS.gene93760:CDS |
| AACATGGCTGATTATCCATT+CGG | 0.461072 | 4.2:+277982 | MS.gene93760:CDS |
| GTAGTAGTAGGGACTGGGAC+TGG | 0.475721 | 4.2:-278042 | None:intergenic |
| TCCTTATTGGGAAAAGTTGA+AGG | 0.475905 | 4.2:-279969 | None:intergenic |
| TGTAGTAGAGGTGTTTAAGA+GGG | 0.476333 | 4.2:-279755 | None:intergenic |
| TGTTAGGAGAAGTAGTAGTA+GGG | 0.476529 | 4.2:-278053 | None:intergenic |
| CCAATAAGGAATGGAGATCA+TGG | 0.480192 | 4.2:+279982 | MS.gene93760:CDS |
| TCTAGTTGTTACTGTGGTTG+TGG | 0.492333 | 4.2:-279797 | None:intergenic |
| CAGCAGCTGATTCCATTTGA+CGG | 0.494340 | 4.2:-278517 | None:intergenic |
| AGAAACTCAATAAACTGGTT+GGG | 0.503624 | 4.2:-280087 | None:intergenic |
| AAGAAACTCAATAAACTGGT+TGG | 0.507314 | 4.2:-280088 | None:intergenic |
| ACCAGAACAGTTAAGAGCAC+TGG | 0.518122 | 4.2:+278346 | MS.gene93760:CDS |
| AGAATCACAAAGCTAGAGAA+AGG | 0.519499 | 4.2:+278483 | MS.gene93760:CDS |
| GAGAAGTAGTAGTAGGGACT+GGG | 0.523006 | 4.2:-278047 | None:intergenic |
| CTGATTATCCATTCGGTGGA+AGG | 0.525296 | 4.2:+277989 | MS.gene93760:CDS |
| ATACTACAACTACAAAGAAA+GGG | 0.528240 | 4.2:+279879 | MS.gene93760:CDS |
| TGTTGGATTTGTTCAGCAGA+AGG | 0.532776 | 4.2:-278398 | None:intergenic |
| GTAGAGGTGTTTAAGAGGGT+AGG | 0.534985 | 4.2:-279751 | None:intergenic |
| TAGTAGTAGGGACTGGGACT+GGG | 0.536421 | 4.2:-278041 | None:intergenic |
| GGGACTGGTCTTGGCATGAG+AGG | 0.539540 | 4.2:-278021 | None:intergenic |
| GATCAGTACTCTAGAACAGA+TGG | 0.548364 | 4.2:+279634 | MS.gene93760:CDS |
| CATTCGGTGGAAGGAAACTA+AGG | 0.548710 | 4.2:+277998 | MS.gene93760:CDS |
| AAAGAAGAAACTTTATGGAA+AGG | 0.550327 | 4.2:+279689 | MS.gene93760:CDS |
| CTTAGTTTCCTTCCACCGAA+TGG | 0.550835 | 4.2:-277997 | None:intergenic |
| TAATAATCCAGCAGCAGTTG+TGG | 0.553191 | 4.2:+278301 | MS.gene93760:CDS |
| AAGAGGAAGAGTACTGGTAC+TGG | 0.555814 | 4.2:-278792 | None:intergenic |
| CCTTATTGGGAAAAGTTGAA+GGG | 0.559443 | 4.2:-279968 | None:intergenic |
| TGGATGGTGGGTTACAATGA+AGG | 0.562024 | 4.2:+277949 | MS.gene93760:CDS |
| CTGGAAGAATTGTATAGAAG+AGG | 0.567704 | 4.2:+278365 | MS.gene93760:CDS |
| CATAAGTCTAGTTGTTACTG+TGG | 0.571838 | 4.2:-279803 | None:intergenic |
| AGTTGTTACTGTGGTTGTGG+TGG | 0.572763 | 4.2:-279794 | None:intergenic |
| CTCTGCAAGAGGAAGAGTAC+TGG | 0.573556 | 4.2:-278798 | None:intergenic |
| AATGAATAAGTTGAAATCAT+GGG | 0.576972 | 4.2:-279845 | None:intergenic |
| CCATGAATGCGGTTTAAGGA+AGG | 0.585809 | 4.2:-278093 | None:intergenic |
| GCTAGCTGTTGTTGTAGTAG+AGG | 0.592314 | 4.2:-279767 | None:intergenic |
| GAATTATAGACCTCTGCAAG+AGG | 0.592853 | 4.2:-278809 | None:intergenic |
| TTGTAGTTGTAGTATGTGTG+AGG | 0.596125 | 4.2:-279871 | None:intergenic |
| CAGTACTCTTCCTCTTGCAG+AGG | 0.600602 | 4.2:+278799 | MS.gene93760:CDS |
| ACTGGTACTGGAATTTGTAG+AGG | 0.614002 | 4.2:-278780 | None:intergenic |
| TTAAACAGTATCAACTACAA+TGG | 0.631968 | 4.2:+279919 | MS.gene93760:CDS |
| ATGGTGGGTTACAATGAAGG+TGG | 0.633455 | 4.2:+277952 | MS.gene93760:CDS |
| TACTACAACAACAGCTAGCG+TGG | 0.635131 | 4.2:+279771 | MS.gene93760:CDS |
| CTGGTACTGGAATTTGTAGA+GGG | 0.635755 | 4.2:-278779 | None:intergenic |
| AGTTGACAACATGTGGATGG+TGG | 0.636173 | 4.2:+277936 | None:intergenic |
| ATGGCTGATTATCCATTCGG+TGG | 0.637470 | 4.2:+277985 | MS.gene93760:CDS |
| AATCATTGCCACCATGAATG+CGG | 0.641369 | 4.2:-278104 | None:intergenic |
| AGTACTCTAGAACAGATGGA+TGG | 0.652013 | 4.2:+279638 | MS.gene93760:CDS |
| TCCTTAAACCGCATTCATGG+TGG | 0.652436 | 4.2:+278096 | MS.gene93760:CDS |
| CATCACAATCTGCAGCAGCA+AGG | 0.652597 | 4.2:+278141 | MS.gene93760:CDS |
| GTTGACAACATGTGGATGGT+GGG | 0.672963 | 4.2:+277937 | None:intergenic |
| CCTAGTTGACAACATGTGGA+TGG | 0.687638 | 4.2:+277933 | None:intergenic |
| TGAAGGTGGTGAGTTCAACA+TGG | 0.718834 | 4.2:+277966 | MS.gene93760:CDS |
| CAGTTGTGGTGAGTTCAAGG+TGG | 0.724586 | 4.2:+278315 | MS.gene93760:CDS |
| TTATGGAAAGGAATGCCACG+TGG | 0.750564 | 4.2:+279701 | MS.gene93760:CDS |
| TAACTGCATCATATGCCACG+TGG | 0.781883 | 4.2:-279716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAATAAAAAA+AGG | - | chr4.2:279377-279396 | None:intergenic | 0.0% |
| !! | AACATATATAAAAACAATAT+TGG | - | chr4.2:278212-278231 | None:intergenic | 10.0% |
| !! | GTTGTATATAATATAATATA+TGG | + | chr4.2:278163-278182 | MS.gene93760:intron | 10.0% |
| !! | TAAAATAAAATAAAAAAAGG+TGG | - | chr4.2:279374-279393 | None:intergenic | 10.0% |
| !! | ATAGGTAAGAAAAAAAAAAA+GGG | - | chr4.2:279450-279469 | None:intergenic | 15.0% |
| !! | GAAAGAAAGAATTTAATTAA+AGG | - | chr4.2:279557-279576 | None:intergenic | 15.0% |
| !! | TTTAAGGAATAATAATCATA+AGG | + | chr4.2:278948-278967 | MS.gene93760:intron | 15.0% |
| !! | AAAAAACAAAAACTAACCAT+AGG | - | chr4.2:279468-279487 | None:intergenic | 20.0% |
| !! | AGAAAAGAAAAGAAAAGAAA+AGG | + | chr4.2:279093-279112 | MS.gene93760:intron | 20.0% |
| !! | CATAGGTAAGAAAAAAAAAA+AGG | - | chr4.2:279451-279470 | None:intergenic | 20.0% |
| !! | TTTCATAGAAAGAAGAATAA+TGG | - | chr4.2:279286-279305 | None:intergenic | 20.0% |
| !!! | AAATGAATAAGTTGAAATCA+TGG | - | chr4.2:279849-279868 | None:intergenic | 20.0% |
| !!! | AATGAATAAGTTGAAATCAT+GGG | - | chr4.2:279848-279867 | None:intergenic | 20.0% |
| !!! | AGAAATTTTGGAAAAATTGA+AGG | + | chr4.2:278437-278456 | MS.gene93760:CDS | 20.0% |
| !!! | ATTATTCCTTAAAGACTTTT+TGG | - | chr4.2:278941-278960 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTTCTTACCTA+TGG | + | chr4.2:279449-279468 | MS.gene93760:intron | 20.0% |
| !!! | TTGTTTTTTTTTTTGTCAAC+AGG | + | chr4.2:278710-278729 | MS.gene93760:intron | 20.0% |
| !!! | TTTAGTATTTTTTTGAGTTG+AGG | + | chr4.2:279507-279526 | MS.gene93760:intron | 20.0% |
| ! | AAAAGAGATATGTATTTGTC+TGG | - | chr4.2:278896-278915 | None:intergenic | 25.0% |
| ! | AAAATACTAAATAACGTGTG+AGG | - | chr4.2:279498-279517 | None:intergenic | 25.0% |
| ! | AAAGAAGAAACTTTATGGAA+AGG | + | chr4.2:279689-279708 | MS.gene93760:CDS | 25.0% |
| ! | AAATAAAAAAAGGTGGATGT+TGG | - | chr4.2:279367-279386 | None:intergenic | 25.0% |
| ! | AATTCACCAAAAAGTCTTTA+AGG | + | chr4.2:278932-278951 | MS.gene93760:intron | 25.0% |
| ! | AATTCTTTCTTTCTTTCTAC+AGG | + | chr4.2:279564-279583 | MS.gene93760:intron | 25.0% |
| ! | ATACTACAACTACAAAGAAA+GGG | + | chr4.2:279879-279898 | MS.gene93760:CDS | 25.0% |
| ! | CTGTAATTATTTAGTGTTAG+AGG | + | chr4.2:278588-278607 | MS.gene93760:intron | 25.0% |
| ! | GTATGTAGTATGTACTAATA+AGG | - | chr4.2:278619-278638 | None:intergenic | 25.0% |
| ! | TTAAACAGTATCAACTACAA+TGG | + | chr4.2:279919-279938 | MS.gene93760:CDS | 25.0% |
| !! | AAGGCAAAAATGTTTTCTAT+TGG | + | chr4.2:278456-278475 | MS.gene93760:CDS | 25.0% |
| !! | TGATATGTTTTATCATGAGT+AGG | + | chr4.2:278251-278270 | MS.gene93760:intron | 25.0% |
| !! | TTTTCCAAAATTTCTAAGCT+GGG | - | chr4.2:278432-278451 | None:intergenic | 25.0% |
| !! | TTTTTCCAAAATTTCTAAGC+TGG | - | chr4.2:278433-278452 | None:intergenic | 25.0% |
| !!! | AATTTGTTGGGAAATGAAAA+GGG | + | chr4.2:279136-279155 | MS.gene93760:intron | 25.0% |
| !!! | ACTTTTTGGTGAATTGATTA+AGG | - | chr4.2:278927-278946 | None:intergenic | 25.0% |
| !!! | CTTTTTGGTGAATTGATTAA+GGG | - | chr4.2:278926-278945 | None:intergenic | 25.0% |
| !!! | TAATTTGTTGGGAAATGAAA+AGG | + | chr4.2:279135-279154 | MS.gene93760:intron | 25.0% |
| AAGAAACTCAATAAACTGGT+TGG | - | chr4.2:280091-280110 | None:intergenic | 30.0% | |
| ACAGCAAAGAAGAAACTTTA+TGG | + | chr4.2:279684-279703 | MS.gene93760:CDS | 30.0% | |
| AGAAACTCAATAAACTGGTT+GGG | - | chr4.2:280090-280109 | None:intergenic | 30.0% | |
| AGGAATCTGTTTCAATTCAA+AGG | + | chr4.2:279584-279603 | MS.gene93760:intron | 30.0% | |
| CATACTACAACTACAAAGAA+AGG | + | chr4.2:279878-279897 | MS.gene93760:CDS | 30.0% | |
| GGAATCTGTTTCAATTCAAA+GGG | + | chr4.2:279585-279604 | MS.gene93760:intron | 30.0% | |
| GTGAAGTCAAATTAAAGCAA+GGG | - | chr4.2:279339-279358 | None:intergenic | 30.0% | |
| TAAATAACGTGTGAGGAAAA+AGG | - | chr4.2:279491-279510 | None:intergenic | 30.0% | |
| TAATGCACAAACTAGGTATA+GGG | + | chr4.2:279064-279083 | MS.gene93760:intron | 30.0% | |
| TACATACTACATACATGACA+TGG | + | chr4.2:278625-278644 | MS.gene93760:intron | 30.0% | |
| TCATTCATTCGTATTGTTGT+TGG | + | chr4.2:278662-278681 | MS.gene93760:intron | 30.0% | |
| TGCTGTTATGAAATTTAGCT+GGG | + | chr4.2:279194-279213 | MS.gene93760:intron | 30.0% | |
| TGTGAAGTCAAATTAAAGCA+AGG | - | chr4.2:279340-279359 | None:intergenic | 30.0% | |
| ! | AAAAAAAAAGGGCATATGCA+CGG | - | chr4.2:279439-279458 | None:intergenic | 30.0% |
| ! | GAAAGAAGAATAATGGAGAT+AGG | - | chr4.2:279279-279298 | None:intergenic | 30.0% |
| ! | GTTTTCATCTCATACTCATA+CGG | + | chr4.2:279529-279548 | MS.gene93760:intron | 30.0% |
| ! | TCCTTGTAGTAGTAATTTGT+TGG | + | chr4.2:279123-279142 | MS.gene93760:intron | 30.0% |
| ! | TGTAGTTGATACTGTTTAAG+TGG | - | chr4.2:279918-279937 | None:intergenic | 30.0% |
| !! | CCTTGTAGTAGTAATTTGTT+GGG | + | chr4.2:279124-279143 | MS.gene93760:intron | 30.0% |
| !! | GTTATAGTTGAAGTGTTGTT+AGG | - | chr4.2:278072-278091 | None:intergenic | 30.0% |
| AACATGGCTGATTATCCATT+CGG | + | chr4.2:277982-278001 | MS.gene93760:CDS | 35.0% | |
| AAGTTGAACACACCAAAAAC+TGG | + | chr4.2:278753-278772 | MS.gene93760:CDS | 35.0% | |
| ACGGAAGAAACTCAATAAAC+TGG | - | chr4.2:280095-280114 | None:intergenic | 35.0% | |
| AGAATCACAAAGCTAGAGAA+AGG | + | chr4.2:278483-278502 | MS.gene93760:CDS | 35.0% | |
| CACAGTAACAACTAGACTTA+TGG | + | chr4.2:279804-279823 | MS.gene93760:CDS | 35.0% | |
| CAGTAAGTAATGCACAAACT+AGG | + | chr4.2:279057-279076 | MS.gene93760:intron | 35.0% | |
| CATAAGTCTAGTTGTTACTG+TGG | - | chr4.2:279806-279825 | None:intergenic | 35.0% | |
| CATGATCTCCATTCCTTATT+GGG | - | chr4.2:279984-280003 | None:intergenic | 35.0% | |
| CCCAACAAATTACTACTACA+AGG | - | chr4.2:279127-279146 | None:intergenic | 35.0% | |
| CCTTATTGGGAAAAGTTGAA+GGG | - | chr4.2:279971-279990 | None:intergenic | 35.0% | |
| CTGCTGTTATGAAATTTAGC+TGG | + | chr4.2:279193-279212 | MS.gene93760:intron | 35.0% | |
| CTGGAAGAATTGTATAGAAG+AGG | + | chr4.2:278365-278384 | MS.gene93760:CDS | 35.0% | |
| GCTCTTGAAAAGAAAGACTT+AGG | + | chr4.2:278551-278570 | MS.gene93760:CDS | 35.0% | |
| GGTGAATTGATTAAGGGAAA+AGG | - | chr4.2:278920-278939 | None:intergenic | 35.0% | |
| GTAATGCACAAACTAGGTAT+AGG | + | chr4.2:279063-279082 | MS.gene93760:intron | 35.0% | |
| GTAATTCTGCTTCATCGAAT+TGG | - | chr4.2:279666-279685 | None:intergenic | 35.0% | |
| TATAATCAGTGCTTAGTGAG+TGG | - | chr4.2:278982-279001 | None:intergenic | 35.0% | |
| TCCTTATTGGGAAAAGTTGA+AGG | - | chr4.2:279972-279991 | None:intergenic | 35.0% | |
| TGTTAGGAGAAGTAGTAGTA+GGG | - | chr4.2:278056-278075 | None:intergenic | 35.0% | |
| TTGTAGTTGTAGTATGTGTG+AGG | - | chr4.2:279874-279893 | None:intergenic | 35.0% | |
| TTGTTAGGAGAAGTAGTAGT+AGG | - | chr4.2:278057-278076 | None:intergenic | 35.0% | |
| ! | AAGTCAAGTCAGTAGCTTTT+GGG | + | chr4.2:279243-279262 | MS.gene93760:intron | 35.0% |
| ! | ATGAAATTTAGCTGGGCTTT+TGG | + | chr4.2:279201-279220 | MS.gene93760:intron | 35.0% |
| ! | CAACTTTTCCCAATAAGGAA+TGG | + | chr4.2:279973-279992 | MS.gene93760:CDS | 35.0% |
| ! | TGAAATTTAGCTGGGCTTTT+GGG | + | chr4.2:279202-279221 | MS.gene93760:intron | 35.0% |
| !! | TGTAGTAGAGGTGTTTAAGA+GGG | - | chr4.2:279758-279777 | None:intergenic | 35.0% |
| !! | TTGTAGTAGAGGTGTTTAAG+AGG | - | chr4.2:279759-279778 | None:intergenic | 35.0% |
| AATCATTGCCACCATGAATG+CGG | - | chr4.2:278107-278126 | None:intergenic | 40.0% | |
| CCAATAAGGAATGGAGATCA+TGG | + | chr4.2:279982-280001 | MS.gene93760:CDS | 40.0% | |
| CCATGATCTCCATTCCTTAT+TGG | - | chr4.2:279985-280004 | None:intergenic | 40.0% | |
| GAATTATAGACCTCTGCAAG+AGG | - | chr4.2:278812-278831 | None:intergenic | 40.0% | |
| TAATAATCCAGCAGCAGTTG+TGG | + | chr4.2:278301-278320 | MS.gene93760:CDS | 40.0% | |
| TCTAGTTGTTACTGTGGTTG+TGG | - | chr4.2:279800-279819 | None:intergenic | 40.0% | |
| ! | AAGGAAGGAATGCAGCTTTT+AGG | - | chr4.2:279163-279182 | None:intergenic | 40.0% |
| ! | ACTGCCCAGCTTAGAAATTT+TGG | + | chr4.2:278425-278444 | MS.gene93760:CDS | 40.0% |
| ! | ACTGGTACTGGAATTTGTAG+AGG | - | chr4.2:278783-278802 | None:intergenic | 40.0% |
| ! | CAAGTCAAGTCAGTAGCTTT+TGG | + | chr4.2:279242-279261 | MS.gene93760:intron | 40.0% |
| ! | CATGGGTCTTGATGAGTTTT+GGG | - | chr4.2:279831-279850 | None:intergenic | 40.0% |
| ! | CCCTTCAACTTTTCCCAATA+AGG | + | chr4.2:279968-279987 | MS.gene93760:CDS | 40.0% |
| ! | CTGGTACTGGAATTTGTAGA+GGG | - | chr4.2:278782-278801 | None:intergenic | 40.0% |
| ! | GAAATTTAGCTGGGCTTTTG+GGG | + | chr4.2:279203-279222 | MS.gene93760:intron | 40.0% |
| ! | TCATGGGTCTTGATGAGTTT+TGG | - | chr4.2:279832-279851 | None:intergenic | 40.0% |
| ! | TGTTGGATTTGTTCAGCAGA+AGG | - | chr4.2:278401-278420 | None:intergenic | 40.0% |
| !! | AGTACTCTAGAACAGATGGA+TGG | + | chr4.2:279638-279657 | MS.gene93760:CDS | 40.0% |
| !! | GATCAGTACTCTAGAACAGA+TGG | + | chr4.2:279634-279653 | MS.gene93760:CDS | 40.0% |
| !!! | AAGCAAGGGTTGTCTTGTTT+TGG | - | chr4.2:279325-279344 | None:intergenic | 40.0% |
| AGTTGTTACTGTGGTTGTGG+TGG | - | chr4.2:279797-279816 | None:intergenic | 45.0% | |
| ATGGCTGATTATCCATTCGG+TGG | + | chr4.2:277985-278004 | MS.gene93760:CDS | 45.0% | |
| CCATGAATGCGGTTTAAGGA+AGG | - | chr4.2:278096-278115 | None:intergenic | 45.0% | |
| CCTTCCTTAAACCGCATTCA+TGG | + | chr4.2:278093-278112 | MS.gene93760:CDS | 45.0% | |
| CTGCATTCCTTCCTTTCTGT+CGG | + | chr4.2:279168-279187 | MS.gene93760:intron | 45.0% | |
| CTTAGTTTCCTTCCACCGAA+TGG | - | chr4.2:278000-278019 | None:intergenic | 45.0% | |
| GAGAAGTAGTAGTAGGGACT+GGG | - | chr4.2:278050-278069 | None:intergenic | 45.0% | |
| GCTAGCTGTTGTTGTAGTAG+AGG | - | chr4.2:279770-279789 | None:intergenic | 45.0% | |
| GCTCTTAACTGTTCTGGTGT+TGG | - | chr4.2:278344-278363 | None:intergenic | 45.0% | |
| TAACTGCATCATATGCCACG+TGG | - | chr4.2:279719-279738 | None:intergenic | 45.0% | |
| TACTACAACAACAGCTAGCG+TGG | + | chr4.2:279771-279790 | MS.gene93760:CDS | 45.0% | |
| TCCAGTGCTCTTAACTGTTC+TGG | - | chr4.2:278350-278369 | None:intergenic | 45.0% | |
| TCCTTAAACCGCATTCATGG+TGG | + | chr4.2:278096-278115 | MS.gene93760:CDS | 45.0% | |
| TCTCTGTCTCTTTGTGTTGC+TGG | - | chr4.2:280044-280063 | None:intergenic | 45.0% | |
| TGAAGGTGGTGAGTTCAACA+TGG | + | chr4.2:277966-277985 | MS.gene93760:CDS | 45.0% | |
| TGCATTCCTTCCTTTCTGTC+GGG | + | chr4.2:279169-279188 | MS.gene93760:intron | 45.0% | |
| TTATGGAAAGGAATGCCACG+TGG | + | chr4.2:279701-279720 | MS.gene93760:CDS | 45.0% | |
| ! | ACCAGAACAGTTAAGAGCAC+TGG | + | chr4.2:278346-278365 | MS.gene93760:CDS | 45.0% |
| ! | CAGCAGCTGATTCCATTTGA+CGG | - | chr4.2:278520-278539 | None:intergenic | 45.0% |
| ! | CATTCGGTGGAAGGAAACTA+AGG | + | chr4.2:277998-278017 | MS.gene93760:CDS | 45.0% |
| ! | CTGATTATCCATTCGGTGGA+AGG | + | chr4.2:277989-278008 | MS.gene93760:CDS | 45.0% |
| ! | TAAGCTGGGCAGTGATTTGT+TGG | - | chr4.2:278418-278437 | None:intergenic | 45.0% |
| ! | TGTAGAGGGTAGCCAGTTTT+TGG | - | chr4.2:278768-278787 | None:intergenic | 45.0% |
| ! | TTTTGTCAACAGGCGCAAGT+AGG | + | chr4.2:278720-278739 | MS.gene93760:intron | 45.0% |
| !! | AAGAGGAAGAGTACTGGTAC+TGG | - | chr4.2:278795-278814 | None:intergenic | 45.0% |
| !! | ATGGTGGGTTACAATGAAGG+TGG | + | chr4.2:277952-277971 | MS.gene93760:CDS | 45.0% |
| !! | GTAGAGGTGTTTAAGAGGGT+AGG | - | chr4.2:279754-279773 | None:intergenic | 45.0% |
| !! | TGGATGGTGGGTTACAATGA+AGG | + | chr4.2:277949-277968 | MS.gene93760:CDS | 45.0% |
| !!! | CAAGGGTTGTCTTGTTTTGG+TGG | - | chr4.2:279322-279341 | None:intergenic | 45.0% |
| CAGCAGTTGTGGTGAGTTCA+AGG | + | chr4.2:278312-278331 | MS.gene93760:CDS | 50.0% | |
| CAGTACTCTTCCTCTTGCAG+AGG | + | chr4.2:278799-278818 | MS.gene93760:CDS | 50.0% | |
| CAGTTGTGGTGAGTTCAAGG+TGG | + | chr4.2:278315-278334 | MS.gene93760:CDS | 50.0% | |
| CATCACAATCTGCAGCAGCA+AGG | + | chr4.2:278141-278160 | MS.gene93760:CDS | 50.0% | |
| GCAAAAACGACGCCGTCAAA+TGG | + | chr4.2:278505-278524 | MS.gene93760:CDS | 50.0% | |
| GCATTCCTTCCTTTCTGTCG+GGG | + | chr4.2:279170-279189 | MS.gene93760:intron | 50.0% | |
| GCCACCATGAATGCGGTTTA+AGG | - | chr4.2:278100-278119 | None:intergenic | 50.0% | |
| GGAGAAGTAGTAGTAGGGAC+TGG | - | chr4.2:278051-278070 | None:intergenic | 50.0% | |
| TAGTAGTAGGGACTGGGACT+GGG | - | chr4.2:278044-278063 | None:intergenic | 50.0% | |
| ! | CTCTGCAAGAGGAAGAGTAC+TGG | - | chr4.2:278801-278820 | None:intergenic | 50.0% |
| GAACTCACCACAACTGCTGC+TGG | - | chr4.2:278311-278330 | None:intergenic | 55.0% | |
| GTAGTAGTAGGGACTGGGAC+TGG | - | chr4.2:278045-278064 | None:intergenic | 55.0% | |
| TAACAGCAGCCCCGACAGAA+AGG | - | chr4.2:279182-279201 | None:intergenic | 55.0% | |
| AGCAGCCCCGACAGAAAGGA+AGG | - | chr4.2:279178-279197 | None:intergenic | 60.0% | |
| !! | ACTGGGACTGGGACTGGTCT+TGG | - | chr4.2:278033-278052 | None:intergenic | 60.0% |
| !! | GGGACTGGTCTTGGCATGAG+AGG | - | chr4.2:278024-278043 | None:intergenic | 60.0% |
| GTAGGGACTGGGACTGGGAC+TGG | - | chr4.2:278039-278058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 277946 | 280125 | 277946 | ID=MS.gene93760 |
| chr4.2 | mRNA | 277946 | 280125 | 277946 | ID=MS.gene93760.t1;Parent=MS.gene93760 |
| chr4.2 | exon | 277946 | 278162 | 277946 | ID=MS.gene93760.t1.exon1;Parent=MS.gene93760.t1 |
| chr4.2 | CDS | 277946 | 278162 | 277946 | ID=cds.MS.gene93760.t1;Parent=MS.gene93760.t1 |
| chr4.2 | exon | 278273 | 278572 | 278273 | ID=MS.gene93760.t1.exon2;Parent=MS.gene93760.t1 |
| chr4.2 | CDS | 278273 | 278572 | 278273 | ID=cds.MS.gene93760.t1;Parent=MS.gene93760.t1 |
| chr4.2 | exon | 278732 | 278820 | 278732 | ID=MS.gene93760.t1.exon3;Parent=MS.gene93760.t1 |
| chr4.2 | CDS | 278732 | 278820 | 278732 | ID=cds.MS.gene93760.t1;Parent=MS.gene93760.t1 |
| chr4.2 | exon | 279586 | 280125 | 279586 | ID=MS.gene93760.t1.exon4;Parent=MS.gene93760.t1 |
| chr4.2 | CDS | 279586 | 280125 | 279586 | ID=cds.MS.gene93760.t1;Parent=MS.gene93760.t1 |
| Gene Sequence |
| Protein sequence |
