Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93853.t1 | XP_003592476.2 | 98.8 | 321 | 3 | 1 | 1 | 320 | 1 | 321 | 9.10E-169 | 602.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93853.t1 | B6ZJZ9 | 70.1 | 318 | 93 | 2 | 1 | 318 | 1 | 316 | 1.7e-118 | 427.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93853.t1 | G7IE57 | 98.8 | 321 | 3 | 1 | 1 | 320 | 1 | 321 | 6.6e-169 | 602.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene93853 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene93853 | 0.816468 | 5.44E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene93853 | 0.819668 | 1.03E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene93853 | 0.801273 | 9.73E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene93853 | 0.824587 | 7.44E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene93853 | 0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene93853 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene93853 | 0.80252 | 5.40E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene93853 | 0.811197 | 7.90E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene93853 | 0.806319 | 8.71E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene93853 | 0.800601 | 1.34E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene93853 | 0.805812 | 1.11E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene93853 | 0.820025 | 8.53E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene93853 | 0.804822 | 1.80E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene93853 | 0.812691 | 3.73E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene93853 | 0.813008 | 3.18E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene93853 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene057856 | MS.gene93853 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene057857 | MS.gene93853 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene93853 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene93853 | 0.816247 | 6.10E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene93853 | 0.824632 | 7.27E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene93853 | 0.800065 | 1.72E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93853.t1 | MTR_1g105410 | 98.754 | 321 | 3 | 1 | 1 | 320 | 1 | 321 | 0.0 | 644 |
| MS.gene93853.t1 | MTR_5g039730 | 68.710 | 310 | 95 | 2 | 1 | 310 | 1 | 308 | 1.03e-150 | 426 |
| MS.gene93853.t1 | MTR_7g039810 | 67.816 | 261 | 82 | 2 | 1 | 261 | 1 | 259 | 1.09e-121 | 350 |
| MS.gene93853.t1 | MTR_7g445250 | 67.433 | 261 | 83 | 2 | 1 | 261 | 1 | 259 | 5.70e-121 | 348 |
| MS.gene93853.t1 | MTR_5g081910 | 26.899 | 316 | 182 | 6 | 24 | 303 | 21 | 323 | 2.73e-27 | 109 |
| MS.gene93853.t1 | MTR_5g081910 | 28.326 | 233 | 126 | 4 | 99 | 303 | 30 | 249 | 1.06e-22 | 95.5 |
| MS.gene93853.t1 | MTR_8g096050 | 29.333 | 300 | 173 | 13 | 12 | 298 | 228 | 501 | 3.58e-19 | 88.2 |
| MS.gene93853.t1 | MTR_8g076760 | 23.860 | 285 | 196 | 7 | 25 | 297 | 28 | 303 | 4.37e-19 | 86.3 |
| MS.gene93853.t1 | MTR_7g445270 | 70.000 | 50 | 15 | 0 | 1 | 50 | 1 | 50 | 1.04e-18 | 78.6 |
| MS.gene93853.t1 | MTR_1g036280 | 24.198 | 343 | 185 | 10 | 26 | 302 | 25 | 358 | 2.35e-17 | 82.0 |
| MS.gene93853.t1 | MTR_7g109135 | 24.503 | 302 | 200 | 7 | 8 | 297 | 19 | 304 | 1.17e-13 | 70.9 |
| MS.gene93853.t1 | MTR_7g109135 | 24.232 | 293 | 205 | 6 | 8 | 297 | 19 | 297 | 4.35e-13 | 69.3 |
| MS.gene93853.t1 | MTR_7g084400 | 27.425 | 299 | 177 | 14 | 12 | 298 | 214 | 484 | 4.55e-13 | 70.1 |
| MS.gene93853.t1 | MTR_3g104500 | 21.683 | 309 | 192 | 12 | 10 | 293 | 33 | 316 | 6.37e-13 | 68.9 |
| MS.gene93853.t1 | MTR_1g012030 | 23.569 | 297 | 190 | 10 | 7 | 293 | 135 | 404 | 3.21e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93853.t1 | AT3G05290 | 69.579 | 309 | 92 | 2 | 1 | 308 | 1 | 308 | 7.61e-158 | 444 |
| MS.gene93853.t1 | AT5G27520 | 69.231 | 312 | 92 | 3 | 1 | 310 | 3 | 312 | 1.09e-155 | 438 |
| MS.gene93853.t1 | AT2G39970 | 24.522 | 314 | 190 | 6 | 26 | 303 | 23 | 325 | 5.27e-26 | 105 |
| MS.gene93853.t1 | AT5G66380 | 23.077 | 299 | 210 | 6 | 10 | 297 | 9 | 298 | 8.25e-19 | 85.5 |
| MS.gene93853.t1 | AT4G32400 | 22.667 | 300 | 197 | 8 | 7 | 297 | 110 | 383 | 9.54e-13 | 68.9 |
| MS.gene93853.t1 | AT5G51050 | 26.667 | 300 | 178 | 12 | 12 | 298 | 224 | 494 | 2.75e-11 | 64.7 |
| MS.gene93853.t1 | AT1G34065 | 22.917 | 288 | 177 | 11 | 12 | 294 | 83 | 330 | 4.76e-11 | 63.5 |
| MS.gene93853.t1 | AT1G34065 | 22.917 | 288 | 177 | 11 | 12 | 294 | 76 | 323 | 4.96e-11 | 63.2 |
Find 70 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAGATGCTTTCAATT+TGG | 0.135005 | 1.2:-78034017 | None:intergenic |
| CTACTTTAAGAGACTATATT+TGG | 0.166458 | 1.2:+78032547 | MS.gene93853:CDS |
| TCATTGTCTGAAGCTATTTC+TGG | 0.192958 | 1.2:+78031417 | MS.gene93853:CDS |
| CTGGAGCACTCTATACTATT+TGG | 0.239300 | 1.2:+78033837 | MS.gene93853:CDS |
| ATTCAAGATGCTTTCAATTT+GGG | 0.243894 | 1.2:-78034016 | None:intergenic |
| TTGAACTTCAGCTTGATATT+TGG | 0.253052 | 1.2:-78031496 | None:intergenic |
| TCGTCGTTTATTTATTTCTA+TGG | 0.253599 | 1.2:+78032518 | MS.gene93853:CDS |
| AGGATGCAGACAAGTGAATT+TGG | 0.266292 | 1.2:+78033099 | MS.gene93853:CDS |
| AACAACAAACCCATCTATTC+AGG | 0.272652 | 1.2:+78033203 | MS.gene93853:CDS |
| CCTTGAGGATGCTGTATCTA+AGG | 0.273262 | 1.2:-78033079 | None:intergenic |
| CTTTCATTGTACCAAGGCTT+GGG | 0.297703 | 1.2:+78032470 | MS.gene93853:CDS |
| GAGAAAGCAGAAAGTGATTC+CGG | 0.301391 | 1.2:-78033413 | None:intergenic |
| AAGAGTGATACCTGAATAGA+TGG | 0.321223 | 1.2:-78033213 | None:intergenic |
| GAAGCTATTTCTGGGGCTAT+TGG | 0.341199 | 1.2:+78031426 | MS.gene93853:CDS |
| TGTTGTTAAAAGAATAGATA+TGG | 0.354667 | 1.2:-78033187 | None:intergenic |
| GCTTGACATACCCAGCTATC+AGG | 0.393298 | 1.2:+78033477 | MS.gene93853:CDS |
| TAGGTGTAAAGTCACTATTC+AGG | 0.395494 | 1.2:+78033754 | MS.gene93853:intron |
| TTGATAATCCACCTGATAGC+TGG | 0.413991 | 1.2:-78033488 | None:intergenic |
| CATTGTCTGAAGCTATTTCT+GGG | 0.423042 | 1.2:+78031418 | MS.gene93853:CDS |
| TGGAAAAGAGAAGGCCTCTT+GGG | 0.439214 | 1.2:+78033857 | MS.gene93853:CDS |
| GCTTTCATTGTACCAAGGCT+TGG | 0.441061 | 1.2:+78032469 | MS.gene93853:CDS |
| TGGATTCTGATGCTCATCAT+TGG | 0.448309 | 1.2:+78033971 | MS.gene93853:CDS |
| TTGATTGCCGCTACTATGTC+CGG | 0.467353 | 1.2:+78032608 | MS.gene93853:CDS |
| AGAAAGCAGAAAGTGATTCC+GGG | 0.471336 | 1.2:-78033412 | None:intergenic |
| TTGGAAAAGAGAAGGCCTCT+TGG | 0.475034 | 1.2:+78033856 | MS.gene93853:CDS |
| AAGGCGCAGAGGACAATCTC+TGG | 0.476185 | 1.2:+78033818 | MS.gene93853:CDS |
| GCTGAAACACAGACTACTAA+AGG | 0.477004 | 1.2:+78033355 | MS.gene93853:CDS |
| ATAAATAAACGACGAAATGA+AGG | 0.484849 | 1.2:-78032510 | None:intergenic |
| ACCTGGAGTGATGCATTTGA+TGG | 0.490024 | 1.2:+78033159 | MS.gene93853:CDS |
| CAGCTCTGCATTACTTCTGA+TGG | 0.493278 | 1.2:+78033922 | MS.gene93853:CDS |
| AGACCTTATCAGAGGGTACC+TGG | 0.496284 | 1.2:+78033142 | MS.gene93853:CDS |
| ACTCCAGGTACCCTCTGATA+AGG | 0.497971 | 1.2:-78033145 | None:intergenic |
| TTGGAAAATCCAAGGGACTC+TGG | 0.499445 | 1.2:+78033118 | MS.gene93853:CDS |
| CTGAAACACAGACTACTAAA+GGG | 0.499748 | 1.2:+78033356 | MS.gene93853:CDS |
| GGAAGCAATTTCTAAACGTC+AGG | 0.508035 | 1.2:+78032445 | MS.gene93853:CDS |
| TAAGGTCTGCCAGAGTCCCT+TGG | 0.511250 | 1.2:-78033127 | None:intergenic |
| GAGTACAGAAGCTGAAAAGA+AGG | 0.511723 | 1.2:+78033799 | MS.gene93853:CDS |
| CCAGCCATCAAAGAAAATAC+AGG | 0.513015 | 1.2:+78031520 | MS.gene93853:CDS |
| ACAAGACGGTGGTGCTAACA+AGG | 0.523486 | 1.2:-78031452 | None:intergenic |
| TTCCGGGGATGACTTTGCAT+CGG | 0.531292 | 1.2:-78033396 | None:intergenic |
| TGCATTACTTCTGATGGTAA+AGG | 0.540385 | 1.2:+78033928 | MS.gene93853:CDS |
| TAAACGACGAAATGAAGGAT+TGG | 0.543647 | 1.2:-78032505 | None:intergenic |
| TTCAAGATGCTTTCAATTTG+GGG | 0.544526 | 1.2:-78034015 | None:intergenic |
| CAAGATGCTTTCAATTTGGG+GGG | 0.545334 | 1.2:-78034013 | None:intergenic |
| CTTGAGGATGCTGTATCTAA+GGG | 0.556289 | 1.2:-78033078 | None:intergenic |
| AAAAGTGGAAACAAGAACAT+TGG | 0.557206 | 1.2:+78032572 | MS.gene93853:CDS |
| TTCACTTGTCTGCATCCTTG+AGG | 0.559298 | 1.2:-78033094 | None:intergenic |
| AAGTGAATTTGGAAAATCCA+AGG | 0.561327 | 1.2:+78033110 | MS.gene93853:CDS |
| AACCGATGCAAAGTCATCCC+CGG | 0.568341 | 1.2:+78033394 | MS.gene93853:CDS |
| ACCATCAAATGCATCACTCC+AGG | 0.576816 | 1.2:-78033160 | None:intergenic |
| TGATAATCCACCTGATAGCT+GGG | 0.581837 | 1.2:-78033487 | None:intergenic |
| TATACTATTTGGAAAAGAGA+AGG | 0.590261 | 1.2:+78033848 | MS.gene93853:CDS |
| TTTCATTGTACCAAGGCTTG+GGG | 0.595728 | 1.2:+78032471 | MS.gene93853:CDS |
| TCAAGATGCTTTCAATTTGG+GGG | 0.597677 | 1.2:-78034014 | None:intergenic |
| CCTTAGATACAGCATCCTCA+AGG | 0.614597 | 1.2:+78033079 | MS.gene93853:CDS |
| AGTGAATTTGGAAAATCCAA+GGG | 0.635743 | 1.2:+78033111 | MS.gene93853:CDS |
| AGAAGATCACAAAGTCGACA+TGG | 0.636206 | 1.2:+78033951 | MS.gene93853:CDS |
| CAGGTGCTTTCATTGTACCA+AGG | 0.638706 | 1.2:+78032464 | MS.gene93853:CDS |
| CTCTGGCAGACCTTATCAGA+GGG | 0.640935 | 1.2:+78033135 | MS.gene93853:CDS |
| AAGCTGAAAAGAAGGCGCAG+AGG | 0.642022 | 1.2:+78033807 | MS.gene93853:CDS |
| ATTGTCTGAAGCTATTTCTG+GGG | 0.648570 | 1.2:+78031419 | MS.gene93853:CDS |
| CTGTACAATACTAATAACAC+AGG | 0.650569 | 1.2:+78032634 | MS.gene93853:CDS |
| GAAAGCAGAAAGTGATTCCG+GGG | 0.652721 | 1.2:-78033411 | None:intergenic |
| AGAGTGATACCTGAATAGAT+GGG | 0.654045 | 1.2:-78033212 | None:intergenic |
| ACTCTGGCAGACCTTATCAG+AGG | 0.672915 | 1.2:+78033134 | MS.gene93853:CDS |
| AGTATCAAGTGGATACAAGA+CGG | 0.683516 | 1.2:-78031466 | None:intergenic |
| TATTAGTATTGTACAGACGC+CGG | 0.694097 | 1.2:-78032627 | None:intergenic |
| CAAGACGGTGGTGCTAACAA+GGG | 0.715250 | 1.2:-78031451 | None:intergenic |
| ACAGACGCCGGACATAGTAG+CGG | 0.747106 | 1.2:-78032615 | None:intergenic |
| ATCAAGTGGATACAAGACGG+TGG | 0.749245 | 1.2:-78031463 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAGAGATAAATAATTT+AGG | - | chr1.2:78033514-78033533 | None:intergenic | 15.0% |
| !! | AGTTAATAGTAAAATTCAAA+AGG | + | chr1.2:78033585-78033604 | MS.gene93853:intron | 15.0% |
| !! | TATAATTCATGAAACAATTT+AGG | + | chr1.2:78031584-78031603 | MS.gene93853:intron | 15.0% |
| !! | TTGAAATTAAGTTTATCAAA+GGG | + | chr1.2:78032762-78032781 | MS.gene93853:intron | 15.0% |
| !!! | ACTTAATTTCAAGTTAATTT+AGG | - | chr1.2:78032754-78032773 | None:intergenic | 15.0% |
| !!! | CTTAATTTCAAGTTAATTTA+GGG | - | chr1.2:78032753-78032772 | None:intergenic | 15.0% |
| !!! | TAATTGAAAAGTACAATATT+TGG | + | chr1.2:78032811-78032830 | MS.gene93853:intron | 15.0% |
| !!! | TTTATCATATTGTTTTATTG+TGG | + | chr1.2:78032350-78032369 | MS.gene93853:intron | 15.0% |
| !!! | TTTTGAATTTTACTATTAAC+TGG | - | chr1.2:78033586-78033605 | None:intergenic | 15.0% |
| !! | ATGTAGTTTATGAAAAAAAC+AGG | + | chr1.2:78031976-78031995 | MS.gene93853:intron | 20.0% |
| !! | CAAAAGAAAACTTGTAATAT+TGG | - | chr1.2:78032328-78032347 | None:intergenic | 20.0% |
| !! | CTTGAAATTAAGTTTATCAA+AGG | + | chr1.2:78032761-78032780 | MS.gene93853:intron | 20.0% |
| !! | TAATTAGCCAATAATCAATT+TGG | - | chr1.2:78031566-78031585 | None:intergenic | 20.0% |
| !! | TGTTGTTAAAAGAATAGATA+TGG | - | chr1.2:78033190-78033209 | None:intergenic | 20.0% |
| !!! | TAAATTTTTTCACAGATATG+TGG | + | chr1.2:78033625-78033644 | MS.gene93853:intron | 20.0% |
| !!! | TGTGTTAATATACAGATTTT+GGG | + | chr1.2:78033541-78033560 | MS.gene93853:intron | 20.0% |
| !!! | TTTGAAGATATAATTTGTGT+TGG | + | chr1.2:78032000-78032019 | MS.gene93853:intron | 20.0% |
| ! | AATCTGCAAAGAAAACAAAT+TGG | + | chr1.2:78032969-78032988 | MS.gene93853:intron | 25.0% |
| ! | AGAATCAATTATTCCAGATT+AGG | + | chr1.2:78033266-78033285 | MS.gene93853:intron | 25.0% |
| ! | AGACTATATTTGGAAAAAAG+TGG | + | chr1.2:78032557-78032576 | MS.gene93853:CDS | 25.0% |
| ! | ATAAATAAACGACGAAATGA+AGG | - | chr1.2:78032513-78032532 | None:intergenic | 25.0% |
| ! | CAAAAATAAGCCAATACAAA+CGG | + | chr1.2:78032084-78032103 | MS.gene93853:intron | 25.0% |
| ! | CTACAATTAAAGAGAAAATG+TGG | - | chr1.2:78032202-78032221 | None:intergenic | 25.0% |
| ! | TATACTATTTGGAAAAGAGA+AGG | + | chr1.2:78033848-78033867 | MS.gene93853:CDS | 25.0% |
| ! | TGAATGTTATCATTACCATT+TGG | - | chr1.2:78032300-78032319 | None:intergenic | 25.0% |
| ! | TGACATACTTATTTGTGATA+TGG | + | chr1.2:78032698-78032717 | MS.gene93853:intron | 25.0% |
| ! | TTTACTATTAACTGGAATCA+TGG | - | chr1.2:78033578-78033597 | None:intergenic | 25.0% |
| !! | AGGAAAACAAATGATAATGT+CGG | + | chr1.2:78031728-78031747 | MS.gene93853:intron | 25.0% |
| !! | ATAACCTGTATTTTCTTTGA+TGG | - | chr1.2:78031527-78031546 | None:intergenic | 25.0% |
| !! | CTACTTTAAGAGACTATATT+TGG | + | chr1.2:78032547-78032566 | MS.gene93853:CDS | 25.0% |
| !! | CTGTGTTAATATACAGATTT+TGG | + | chr1.2:78033540-78033559 | MS.gene93853:intron | 25.0% |
| !! | CTTTAAGAACATCTTGTATT+TGG | + | chr1.2:78031762-78031781 | MS.gene93853:intron | 25.0% |
| !! | GAGAATTTCTGATGTTTTAT+GGG | + | chr1.2:78032424-78032443 | MS.gene93853:CDS | 25.0% |
| !!! | ACAGGTTATTTTCCTTTTAT+TGG | + | chr1.2:78031538-78031557 | MS.gene93853:intron | 25.0% |
| !!! | AGATGTTTTGAATTTCCAAT+AGG | + | chr1.2:78033735-78033754 | MS.gene93853:intron | 25.0% |
| !!! | ATTTTTTACCAAATACAGAC+AGG | - | chr1.2:78031636-78031655 | None:intergenic | 25.0% |
| !!! | CAGGTTATTTTCCTTTTATT+GGG | + | chr1.2:78031539-78031558 | MS.gene93853:intron | 25.0% |
| !!! | TCGTCGTTTATTTATTTCTA+TGG | + | chr1.2:78032518-78032537 | MS.gene93853:CDS | 25.0% |
| AAAAGTGGAAACAAGAACAT+TGG | + | chr1.2:78032572-78032591 | MS.gene93853:CDS | 30.0% | |
| AAGTGAATTTGGAAAATCCA+AGG | + | chr1.2:78033110-78033129 | MS.gene93853:CDS | 30.0% | |
| AATAGTGACTTTACACCTAT+TGG | - | chr1.2:78033753-78033772 | None:intergenic | 30.0% | |
| ACGAAAACATCTTACAGTTT+AGG | + | chr1.2:78032162-78032181 | MS.gene93853:intron | 30.0% | |
| AGAACATCTTGTATTTGGAT+TGG | + | chr1.2:78031767-78031786 | MS.gene93853:intron | 30.0% | |
| AGTGAATTTGGAAAATCCAA+GGG | + | chr1.2:78033111-78033130 | MS.gene93853:CDS | 30.0% | |
| ATCAATTTGGACCCAATAAA+AGG | - | chr1.2:78031553-78031572 | None:intergenic | 30.0% | |
| ATTGGGTCCAAATTGATTAT+TGG | + | chr1.2:78031556-78031575 | MS.gene93853:intron | 30.0% | |
| CTGTACAATACTAATAACAC+AGG | + | chr1.2:78032634-78032653 | MS.gene93853:CDS | 30.0% | |
| CTTATCACAATAACTACTCT+AGG | + | chr1.2:78031858-78031877 | MS.gene93853:intron | 30.0% | |
| TCAATTAATGTCATGTTTGC+AGG | - | chr1.2:78032798-78032817 | None:intergenic | 30.0% | |
| TCATATAGTGTAACCTAATC+TGG | - | chr1.2:78033282-78033301 | None:intergenic | 30.0% | |
| TTATTGTGGCAAGATTAACA+AGG | + | chr1.2:78032364-78032383 | MS.gene93853:intron | 30.0% | |
| TTGAACTTCAGCTTGATATT+TGG | - | chr1.2:78031499-78031518 | None:intergenic | 30.0% | |
| ! | ATTTAGGTTAAGTGTGTGTT+TGG | + | chr1.2:78031600-78031619 | MS.gene93853:intron | 30.0% |
| ! | GGAGAATTTCTGATGTTTTA+TGG | + | chr1.2:78032423-78032442 | MS.gene93853:intron | 30.0% |
| !!! | TTGGTTTTACAAGTATCAAG+TGG | - | chr1.2:78031480-78031499 | None:intergenic | 30.0% |
| AAACATCTTTCATCAGCATG+TGG | - | chr1.2:78033723-78033742 | None:intergenic | 35.0% | |
| AACAACAAACCCATCTATTC+AGG | + | chr1.2:78033203-78033222 | MS.gene93853:CDS | 35.0% | |
| AAGAGTGATACCTGAATAGA+TGG | - | chr1.2:78033216-78033235 | None:intergenic | 35.0% | |
| AGAGTGATACCTGAATAGAT+GGG | - | chr1.2:78033215-78033234 | None:intergenic | 35.0% | |
| AGTATCAAGTGGATACAAGA+CGG | - | chr1.2:78031469-78031488 | None:intergenic | 35.0% | |
| ATCCATTGAAAAATCCCAAG+AGG | - | chr1.2:78033874-78033893 | None:intergenic | 35.0% | |
| ATCCTTGTCTAAAAAGAACG+CGG | + | chr1.2:78032910-78032929 | MS.gene93853:intron | 35.0% | |
| ATCTTTAGCAGAACTAGGTA+CGG | + | chr1.2:78032861-78032880 | MS.gene93853:intron | 35.0% | |
| CAGCAAGGAAATAATGAGTT+TGG | - | chr1.2:78033019-78033038 | None:intergenic | 35.0% | |
| CTGAAACACAGACTACTAAA+GGG | + | chr1.2:78033356-78033375 | MS.gene93853:CDS | 35.0% | |
| CTTATCACAATAACTACTCC+AGG | + | chr1.2:78032132-78032151 | MS.gene93853:intron | 35.0% | |
| GTTGTTGCTCTATCTTATGT+AGG | + | chr1.2:78032402-78032421 | MS.gene93853:intron | 35.0% | |
| TAAACGACGAAATGAAGGAT+TGG | - | chr1.2:78032508-78032527 | None:intergenic | 35.0% | |
| TAGGTGTAAAGTCACTATTC+AGG | + | chr1.2:78033754-78033773 | MS.gene93853:intron | 35.0% | |
| TATTAGTATTGTACAGACGC+CGG | - | chr1.2:78032630-78032649 | None:intergenic | 35.0% | |
| TCAAGATGCTTTCAATTTGG+GGG | - | chr1.2:78034017-78034036 | None:intergenic | 35.0% | |
| TGACATACATCCGTTTGTAT+TGG | - | chr1.2:78032097-78032116 | None:intergenic | 35.0% | |
| TGCATTACTTCTGATGGTAA+AGG | + | chr1.2:78033928-78033947 | MS.gene93853:CDS | 35.0% | |
| TTAATGTCATGTTTGCAGGA+CGG | - | chr1.2:78032794-78032813 | None:intergenic | 35.0% | |
| ! | CAAATGATAATGTCGGTGTT+TGG | + | chr1.2:78031735-78031754 | MS.gene93853:intron | 35.0% |
| ! | GATGTTTTCGTAAACTATCC+TGG | - | chr1.2:78032153-78032172 | None:intergenic | 35.0% |
| ! | TCATTGTCTGAAGCTATTTC+TGG | + | chr1.2:78031417-78031436 | MS.gene93853:CDS | 35.0% |
| !! | ATTGTCTGAAGCTATTTCTG+GGG | + | chr1.2:78031419-78031438 | MS.gene93853:CDS | 35.0% |
| !! | CACTATGAAGTATTGTTCAG+TGG | + | chr1.2:78031705-78031724 | MS.gene93853:intron | 35.0% |
| !! | CATTGTCTGAAGCTATTTCT+GGG | + | chr1.2:78031418-78031437 | MS.gene93853:CDS | 35.0% |
| !! | CTCATTATTTCCTTGCTGTT+AGG | + | chr1.2:78033021-78033040 | MS.gene93853:intron | 35.0% |
| !! | GCTTTCTCTGCTTTTATGTT+GGG | + | chr1.2:78033428-78033447 | MS.gene93853:CDS | 35.0% |
| !! | TATGAAGTATTGTTCAGTGG+AGG | + | chr1.2:78031708-78031727 | MS.gene93853:intron | 35.0% |
| !! | TGCTTTCTCTGCTTTTATGT+TGG | + | chr1.2:78033427-78033446 | MS.gene93853:CDS | 35.0% |
| ACTCGATCTTTAGCAGAACT+AGG | + | chr1.2:78032856-78032875 | MS.gene93853:intron | 40.0% | |
| AGAAAGCAGAAAGTGATTCC+GGG | - | chr1.2:78033415-78033434 | None:intergenic | 40.0% | |
| AGAAGATCACAAAGTCGACA+TGG | + | chr1.2:78033951-78033970 | MS.gene93853:CDS | 40.0% | |
| AGATTATGCACCTAACAGCA+AGG | - | chr1.2:78033034-78033053 | None:intergenic | 40.0% | |
| AGGATGCAGACAAGTGAATT+TGG | + | chr1.2:78033099-78033118 | MS.gene93853:CDS | 40.0% | |
| CAAGATGCTTTCAATTTGGG+GGG | - | chr1.2:78034016-78034035 | None:intergenic | 40.0% | |
| CCAGCCATCAAAGAAAATAC+AGG | + | chr1.2:78031520-78031539 | MS.gene93853:CDS | 40.0% | |
| CTTGAGGATGCTGTATCTAA+GGG | - | chr1.2:78033081-78033100 | None:intergenic | 40.0% | |
| CTTTCATTGTACCAAGGCTT+GGG | + | chr1.2:78032470-78032489 | MS.gene93853:CDS | 40.0% | |
| GAGAAAGCAGAAAGTGATTC+CGG | - | chr1.2:78033416-78033435 | None:intergenic | 40.0% | |
| GAGTACAGAAGCTGAAAAGA+AGG | + | chr1.2:78033799-78033818 | MS.gene93853:CDS | 40.0% | |
| GATCGAATGCAGTATACTGT+TGG | - | chr1.2:78033334-78033353 | None:intergenic | 40.0% | |
| GCTGAAACACAGACTACTAA+AGG | + | chr1.2:78033355-78033374 | MS.gene93853:CDS | 40.0% | |
| GGAAGCAATTTCTAAACGTC+AGG | + | chr1.2:78032445-78032464 | MS.gene93853:CDS | 40.0% | |
| GGTTTCTGCAGATGTATCTT+GGG | + | chr1.2:78033646-78033665 | MS.gene93853:intron | 40.0% | |
| TAGAGACTCCTGTCTGTATT+TGG | + | chr1.2:78031625-78031644 | MS.gene93853:intron | 40.0% | |
| TGATAATCCACCTGATAGCT+GGG | - | chr1.2:78033490-78033509 | None:intergenic | 40.0% | |
| TGGATTCTGATGCTCATCAT+TGG | + | chr1.2:78033971-78033990 | MS.gene93853:CDS | 40.0% | |
| TGGTTTCTGCAGATGTATCT+TGG | + | chr1.2:78033645-78033664 | MS.gene93853:intron | 40.0% | |
| TTTCATTGTACCAAGGCTTG+GGG | + | chr1.2:78032471-78032490 | MS.gene93853:CDS | 40.0% | |
| ! | AACCGCGTTCTTTTTAGACA+AGG | - | chr1.2:78032915-78032934 | None:intergenic | 40.0% |
| ! | CTGGAGCACTCTATACTATT+TGG | + | chr1.2:78033837-78033856 | MS.gene93853:CDS | 40.0% |
| ! | TTGATAATCCACCTGATAGC+TGG | - | chr1.2:78033491-78033510 | None:intergenic | 40.0% |
| !! | CCTGTATTTTCTTTGATGGC+TGG | - | chr1.2:78031523-78031542 | None:intergenic | 40.0% |
| !!! | GGGATTTTTCAATGGATTGC+AGG | + | chr1.2:78033877-78033896 | MS.gene93853:CDS | 40.0% |
| ACCATCAAATGCATCACTCC+AGG | - | chr1.2:78033163-78033182 | None:intergenic | 45.0% | |
| ACCTGGAGTGATGCATTTGA+TGG | + | chr1.2:78033159-78033178 | MS.gene93853:CDS | 45.0% | |
| ATCAAGTGGATACAAGACGG+TGG | - | chr1.2:78031466-78031485 | None:intergenic | 45.0% | |
| CAGCTCTGCATTACTTCTGA+TGG | + | chr1.2:78033922-78033941 | MS.gene93853:CDS | 45.0% | |
| CAGGTGCTTTCATTGTACCA+AGG | + | chr1.2:78032464-78032483 | MS.gene93853:CDS | 45.0% | |
| CCTTAGATACAGCATCCTCA+AGG | + | chr1.2:78033079-78033098 | MS.gene93853:CDS | 45.0% | |
| CCTTGAGGATGCTGTATCTA+AGG | - | chr1.2:78033082-78033101 | None:intergenic | 45.0% | |
| CGAATGCAGTATACTGTTGG+AGG | - | chr1.2:78033331-78033350 | None:intergenic | 45.0% | |
| GAAAGCAGAAAGTGATTCCG+GGG | - | chr1.2:78033414-78033433 | None:intergenic | 45.0% | |
| GCTTTCATTGTACCAAGGCT+TGG | + | chr1.2:78032469-78032488 | MS.gene93853:CDS | 45.0% | |
| TGCTTTCAATTTGGGGGGAT+TGG | - | chr1.2:78034011-78034030 | None:intergenic | 45.0% | |
| TGGAAAAGAGAAGGCCTCTT+GGG | + | chr1.2:78033857-78033876 | MS.gene93853:CDS | 45.0% | |
| TTCACTTGTCTGCATCCTTG+AGG | - | chr1.2:78033097-78033116 | None:intergenic | 45.0% | |
| TTGATTGCCGCTACTATGTC+CGG | + | chr1.2:78032608-78032627 | MS.gene93853:CDS | 45.0% | |
| TTGGAAAAGAGAAGGCCTCT+TGG | + | chr1.2:78033856-78033875 | MS.gene93853:CDS | 45.0% | |
| TTGGAAAATCCAAGGGACTC+TGG | + | chr1.2:78033118-78033137 | MS.gene93853:CDS | 45.0% | |
| !! | GAAGCTATTTCTGGGGCTAT+TGG | + | chr1.2:78031426-78031445 | MS.gene93853:CDS | 45.0% |
| !! | GGCCTCTTGGGATTTTTCAA+TGG | + | chr1.2:78033869-78033888 | MS.gene93853:CDS | 45.0% |
| !!! | CATTTTTTGTCCCCAAGCCT+TGG | - | chr1.2:78032484-78032503 | None:intergenic | 45.0% |
| AACCGATGCAAAGTCATCCC+CGG | + | chr1.2:78033394-78033413 | MS.gene93853:CDS | 50.0% | |
| ACTCCAGGTACCCTCTGATA+AGG | - | chr1.2:78033148-78033167 | None:intergenic | 50.0% | |
| ACTCTGGCAGACCTTATCAG+AGG | + | chr1.2:78033134-78033153 | MS.gene93853:CDS | 50.0% | |
| CAAACGCACACGATGCCAAA+TGG | + | chr1.2:78032282-78032301 | MS.gene93853:intron | 50.0% | |
| CATTTGGCATCGTGTGCGTT+TGG | - | chr1.2:78032284-78032303 | None:intergenic | 50.0% | |
| CTCTGGCAGACCTTATCAGA+GGG | + | chr1.2:78033135-78033154 | MS.gene93853:CDS | 50.0% | |
| GCTTGACATACCCAGCTATC+AGG | + | chr1.2:78033477-78033496 | MS.gene93853:CDS | 50.0% | |
| TGACATACCCAGCTATCAGG+TGG | + | chr1.2:78033480-78033499 | MS.gene93853:intron | 50.0% | |
| TTCCGGGGATGACTTTGCAT+CGG | - | chr1.2:78033399-78033418 | None:intergenic | 50.0% | |
| ! | AAGCTGAAAAGAAGGCGCAG+AGG | + | chr1.2:78033807-78033826 | MS.gene93853:CDS | 50.0% |
| ! | ACAAGACGGTGGTGCTAACA+AGG | - | chr1.2:78031455-78031474 | None:intergenic | 50.0% |
| ! | CAAGACGGTGGTGCTAACAA+GGG | - | chr1.2:78031454-78031473 | None:intergenic | 50.0% |
| !! | AGACCTTATCAGAGGGTACC+TGG | + | chr1.2:78033142-78033161 | MS.gene93853:CDS | 50.0% |
| AAGGCGCAGAGGACAATCTC+TGG | + | chr1.2:78033818-78033837 | MS.gene93853:CDS | 55.0% | |
| ACAGACGCCGGACATAGTAG+CGG | - | chr1.2:78032618-78032637 | None:intergenic | 55.0% | |
| CATCAGCGCAGCACGTGTTT+GGG | + | chr1.2:78031790-78031809 | MS.gene93853:intron | 55.0% | |
| TAAGGTCTGCCAGAGTCCCT+TGG | - | chr1.2:78033130-78033149 | None:intergenic | 55.0% | |
| GCATCAGCGCAGCACGTGTT+TGG | + | chr1.2:78031789-78031808 | MS.gene93853:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 78031399 | 78034036 | 78031399 | ID=MS.gene93853 |
| chr1.2 | mRNA | 78031399 | 78034036 | 78031399 | ID=MS.gene93853.t1;Parent=MS.gene93853 |
| chr1.2 | exon | 78031399 | 78031541 | 78031399 | ID=MS.gene93853.t1.exon1;Parent=MS.gene93853.t1 |
| chr1.2 | CDS | 78031399 | 78031541 | 78031399 | ID=cds.MS.gene93853.t1;Parent=MS.gene93853.t1 |
| chr1.2 | exon | 78032424 | 78032655 | 78032424 | ID=MS.gene93853.t1.exon2;Parent=MS.gene93853.t1 |
| chr1.2 | CDS | 78032424 | 78032655 | 78032424 | ID=cds.MS.gene93853.t1;Parent=MS.gene93853.t1 |
| chr1.2 | exon | 78033078 | 78033224 | 78033078 | ID=MS.gene93853.t1.exon3;Parent=MS.gene93853.t1 |
| chr1.2 | CDS | 78033078 | 78033224 | 78033078 | ID=cds.MS.gene93853.t1;Parent=MS.gene93853.t1 |
| chr1.2 | exon | 78033338 | 78033498 | 78033338 | ID=MS.gene93853.t1.exon4;Parent=MS.gene93853.t1 |
| chr1.2 | CDS | 78033338 | 78033498 | 78033338 | ID=cds.MS.gene93853.t1;Parent=MS.gene93853.t1 |
| chr1.2 | exon | 78033757 | 78034036 | 78033757 | ID=MS.gene93853.t1.exon5;Parent=MS.gene93853.t1 |
| chr1.2 | CDS | 78033757 | 78034036 | 78033757 | ID=cds.MS.gene93853.t1;Parent=MS.gene93853.t1 |
| Gene Sequence |
| Protein sequence |
