AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057857


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057857.t1 MTR_4g016510 94.017 234 11 1 49 279 38 271 1.40e-163 455
MS.gene057857.t1 MTR_7g068530 68.037 219 64 4 49 264 38 253 1.43e-104 305
MS.gene057857.t1 MTR_7g068460 58.300 247 93 3 20 263 41 280 1.01e-100 296
MS.gene057857.t1 MTR_7g068500 58.300 247 93 3 20 263 40 279 2.93e-99 293
MS.gene057857.t1 MTR_7g068470 57.490 247 94 4 20 263 10 248 4.88e-95 281
MS.gene057857.t1 MTR_3g070460 60.731 219 83 1 49 264 38 256 9.14e-95 280
MS.gene057857.t1 MTR_7g068550 59.361 219 84 2 49 264 38 254 1.25e-94 280
MS.gene057857.t1 MTR_4g016500 63.745 251 16 6 41 288 273 451 2.38e-94 286
MS.gene057857.t1 MTR_7g068470 56.275 247 93 5 20 263 10 244 1.53e-90 269
MS.gene057857.t1 MTR_7g068450 53.982 226 96 4 46 264 31 255 1.14e-79 242
MS.gene057857.t1 MTR_2g015500 33.493 209 124 5 44 241 31 235 5.93e-33 121
MS.gene057857.t1 MTR_2g015510 35.979 189 109 6 41 217 26 214 1.27e-32 120
MS.gene057857.t1 MTR_7g068520 32.787 244 63 4 20 263 11 153 1.29e-30 112
MS.gene057857.t1 MTR_4g105680 32.500 200 123 4 49 240 62 257 5.26e-26 103
MS.gene057857.t1 MTR_2g015480 29.534 193 103 7 41 217 78 253 4.98e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057857.t1 AT3G11210 58.447 219 88 1 49 264 38 256 4.49e-92 273
MS.gene057857.t1 AT2G38180 55.000 220 85 5 48 262 37 247 1.11e-76 236
MS.gene057857.t1 AT5G45920 37.430 179 104 5 47 217 33 211 6.38e-35 126
MS.gene057857.t1 AT5G45920 37.430 179 104 5 47 217 33 211 6.38e-35 126
MS.gene057857.t1 AT5G62930 32.000 200 124 3 49 240 34 229 4.51e-33 122
MS.gene057857.t1 AT5G62930 32.000 200 124 3 49 240 60 255 1.09e-32 121
MS.gene057857.t1 AT5G45920 35.948 153 90 5 49 193 35 187 2.47e-26 102
MS.gene057857.t1 AT5G45920 35.948 153 90 5 49 193 35 187 2.47e-26 102
MS.gene057857.t1 AT5G62930 30.769 169 105 3 80 240 7 171 8.98e-24 95.9

Find 66 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTCACGAAACTTTC+AGG 0.095023 4.4:+84508417 MS.gene057857:CDS
TTTCCCATTCAAAATGTTTC+TGG 0.167567 4.4:-84509473 None:intergenic
TACTTAAAGCAGTAATATAT+TGG 0.245400 4.4:+84508880 MS.gene057857:intron
TCATTGGTTATCGTGTATTT+TGG 0.248088 4.4:+84508166 MS.gene057857:CDS
GAATTCAAGGCGTGCTGTTC+AGG 0.251854 4.4:+84507487 MS.gene057857:CDS
CACAATGGAAACCGATTTGC+AGG 0.287471 4.4:+84506571 MS.gene057857:CDS
TGCCAGCTGATTCTTCAAAT+TGG 0.307583 4.4:-84509533 None:intergenic
GAATCTTCTGCAAACTCATT+TGG 0.330143 4.4:-84509390 None:intergenic
GAAGATTATTATCCATCTTA+AGG 0.337002 4.4:+84508258 MS.gene057857:CDS
GATTCATTTGTCCTCTTTAG+TGG 0.350705 4.4:-84508905 None:intergenic
ACTTTATTCAGAAGCATGTT+TGG 0.352908 4.4:+84508934 MS.gene057857:CDS
AAGGCGTGCTGTTCAGGTTC+TGG 0.385053 4.4:+84507493 MS.gene057857:CDS
AACTCAGTTATAGACCTTGC+TGG 0.388803 4.4:-84509560 None:intergenic
GTGATGACCATTCGATGGTT+TGG 0.395292 4.4:-84509511 None:intergenic
TGAATTTGCGCCTCGTTGAC+TGG 0.398407 4.4:-84508404 None:intergenic
TGATGTTGAGCAACCATCAT+TGG 0.406835 4.4:+84508150 MS.gene057857:CDS
TCTATAGCAACTGGATCATA+TGG 0.419003 4.4:-84509414 None:intergenic
ACTTAAAGCAGTAATATATT+GGG 0.420900 4.4:+84508881 MS.gene057857:intron
ATTGATTTCCAGTGTAGACT+TGG 0.433496 4.4:-84509366 None:intergenic
CTACTGTCAATGTCTCCAAC+TGG 0.451353 4.4:+84509445 MS.gene057857:CDS
CATCCACATCCATCTGGCCT+TGG 0.454643 4.4:+84508205 MS.gene057857:CDS
CGATTTGCAGGGCACACAAC+AGG 0.467402 4.4:+84506583 MS.gene057857:CDS
TGTGTTGCACGATATGCGTT+TGG 0.482524 4.4:+84506444 None:intergenic
CTGGTCTGCACTTCAGCAAA+GGG 0.483151 4.4:+84508994 MS.gene057857:CDS
GATACTGTGGTTGGAATTCA+AGG 0.484531 4.4:+84507474 MS.gene057857:CDS
GGTTCCAGTCCGTGTCTTCG+AGG 0.492613 4.4:-84509344 None:intergenic
GCCTCACTAGTTATGAATGC+AGG 0.498792 4.4:+84506514 MS.gene057857:CDS
ATGTCAAGGCCATTGACCTC+TGG 0.499532 4.4:+84508975 MS.gene057857:CDS
TGCTTCTGAATAAAGTCTAC+AGG 0.500632 4.4:-84508927 None:intergenic
TCTATTCATCCACATCCATC+TGG 0.500776 4.4:+84508199 MS.gene057857:CDS
TTTCCAGAGCTTGTCGAAGA+AGG 0.505557 4.4:+84508355 MS.gene057857:intron
TTGATTTCCAGTGTAGACTT+GGG 0.516004 4.4:-84509365 None:intergenic
AAATACACGATAACCAATGA+TGG 0.520894 4.4:-84508163 None:intergenic
TGTGGAATTCAACCTTAAGA+TGG 0.529846 4.4:-84508270 None:intergenic
TGCATTTCCAAACCATCGAA+TGG 0.539312 4.4:+84509504 MS.gene057857:CDS
GGTCCAAGGCCAGATGGATG+TGG 0.540101 4.4:-84508208 None:intergenic
TCTGGTCTGCACTTCAGCAA+AGG 0.543201 4.4:+84508993 MS.gene057857:CDS
AATTGGTGATGACCATTCGA+TGG 0.544305 4.4:-84509516 None:intergenic
CTGTTGTGTGCCCTGCAAAT+CGG 0.552177 4.4:-84506582 None:intergenic
TGTATTCTTCAAGGGGTCCA+AGG 0.556258 4.4:-84508222 None:intergenic
TGGAATTCATTTGTCACATG+AGG 0.558725 4.4:+84509287 MS.gene057857:CDS
AAGTGCAGACCAGAGGTCAA+TGG 0.560897 4.4:-84508984 None:intergenic
CACCAATTTGAAGAATCAGC+TGG 0.569141 4.4:+84509531 MS.gene057857:CDS
TCAAGGGGTCCAAGGCCAGA+TGG 0.570812 4.4:-84508214 None:intergenic
AGGTCCTCGAAGACACGGAC+TGG 0.572892 4.4:+84509340 MS.gene057857:CDS
GTTGCACGATATGCGTTTGG+TGG 0.575467 4.4:+84506447 None:intergenic
TGGCCTTGACATTCATCTCA+TGG 0.580073 4.4:-84508964 None:intergenic
ATATATTGGGACCACTAAAG+AGG 0.585513 4.4:+84508894 MS.gene057857:CDS
ATGTTTCTGGAAGTTCCAGT+TGG 0.594171 4.4:-84509460 None:intergenic
ACTGGAACCCAAGTCTACAC+TGG 0.596478 4.4:+84509358 MS.gene057857:CDS
GAAGCTCATTGATATTGTAG+AGG 0.598178 4.4:-84506480 None:intergenic
TCTGGATACAATATTTCCCA+AGG 0.600454 4.4:+84507511 MS.gene057857:CDS
GCTCATTGATATTGTAGAGG+AGG 0.602680 4.4:-84506477 None:intergenic
AGTTGTGGAAGAGATATTGA+AGG 0.604308 4.4:+84509320 MS.gene057857:CDS
GGAATTCATTTGTCACATGA+GGG 0.607224 4.4:+84509288 MS.gene057857:CDS
TGAGGGTAGCAAGATAGTTG+TGG 0.609183 4.4:+84509305 MS.gene057857:CDS
TGATATTGTAGAGGAGGACG+AGG 0.614724 4.4:-84506471 None:intergenic
TCCTGCATTCATAACTAGTG+AGG 0.621113 4.4:-84506515 None:intergenic
ATTGAAGGTCCTCGAAGACA+CGG 0.625333 4.4:+84509335 MS.gene057857:CDS
ATTTGCGCCTCGTTGACTGG+AGG 0.659648 4.4:-84508401 None:intergenic
TTTGCTGAAGTGCAGACCAG+AGG 0.667155 4.4:-84508991 None:intergenic
TCAGCTGGCACAAACCAGCA+AGG 0.667249 4.4:+84509546 MS.gene057857:CDS
ACAATGGAAACCGATTTGCA+GGG 0.672592 4.4:+84506572 MS.gene057857:CDS
TACTTACGTGAAGCAAACAT+CGG 0.672886 4.4:-84509026 None:intergenic
CAGTTCTCCTCCAGTCAACG+AGG 0.676220 4.4:+84508394 MS.gene057857:CDS
GTGCCATGAGATGAATGTCA+AGG 0.713777 4.4:+84508961 MS.gene057857:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTTAAATTTTTAAAAC+AGG - chr4.4:84507905-84507924 None:intergenic 10.0%
!!! TTTTCATTATGATTAATTTA+TGG + chr4.4:84507768-84507787 MS.gene057857:intron 10.0%
!! AATATTCATGCTTAATAAAA+AGG - chr4.4:84507739-84507758 None:intergenic 15.0%
!! CAAAATGAATCTAAATATTA+TGG - chr4.4:84508055-84508074 None:intergenic 15.0%
!!! CATAATATTTAGATTCATTT+TGG + chr4.4:84508053-84508072 MS.gene057857:intron 15.0%
!!! TCAAAATTTTACCTTTTTTT+TGG + chr4.4:84507573-84507592 MS.gene057857:intron 15.0%
!! AAAAATGTGGTTAAAAAATG+CGG - chr4.4:84509163-84509182 None:intergenic 20.0%
!! AATCACATAGCATATATAAA+AGG - chr4.4:84508491-84508510 None:intergenic 20.0%
!! ACTTAAAGCAGTAATATATT+GGG + chr4.4:84508881-84508900 MS.gene057857:intron 20.0%
!! ATAATTGAGCCATATAAATT+AGG + chr4.4:84507137-84507156 MS.gene057857:intron 20.0%
!! ATTGATATTGTAGAAAAATG+GGG - chr4.4:84508662-84508681 None:intergenic 20.0%
!! CATTGATATTGTAGAAAAAT+GGG - chr4.4:84508663-84508682 None:intergenic 20.0%
!! CTTAATACTATAGAAAAATG+TGG - chr4.4:84509176-84509195 None:intergenic 20.0%
!! CTTAGAATGTTAATTAAGTA+AGG + chr4.4:84506853-84506872 MS.gene057857:intron 20.0%
!! GATTAATTTATGGTTATTTG+TGG + chr4.4:84507778-84507797 MS.gene057857:intron 20.0%
!! TAAATATTATGGTAACAGTA+GGG - chr4.4:84508044-84508063 None:intergenic 20.0%
!! TAATCCTAAAATAGAATCAT+TGG - chr4.4:84506997-84507016 None:intergenic 20.0%
!! TAATGAAGCATAACTTATAT+AGG + chr4.4:84508514-84508533 MS.gene057857:intron 20.0%
!! TACATACAAGTCTTAAAAAT+AGG + chr4.4:84509069-84509088 MS.gene057857:intron 20.0%
!! TACTTAAAGCAGTAATATAT+TGG + chr4.4:84508880-84508899 MS.gene057857:intron 20.0%
!! TAGTTACATGAGATATATAT+TGG + chr4.4:84508577-84508596 MS.gene057857:intron 20.0%
!! TCATTGATATTGTAGAAAAA+TGG - chr4.4:84508664-84508683 None:intergenic 20.0%
!!! AATAAAAAACAATGATAGTG+TGG - chr4.4:84508291-84508310 None:intergenic 20.0%
!!! AATAAGTTGTTCTAAAGAAA+AGG - chr4.4:84508717-84508736 None:intergenic 20.0%
!!! ACTTGATTTTTATATAGTGT+TGG + chr4.4:84506710-84506729 MS.gene057857:intron 20.0%
!!! ATTTCTCTATAGCATTTTTA+TGG + chr4.4:84507394-84507413 MS.gene057857:intron 20.0%
!!! CACATTTTTCTATAGTATTA+AGG + chr4.4:84509174-84509193 MS.gene057857:intron 20.0%
!!! TTTTCTTTAGAACAACTTAT+TGG + chr4.4:84508716-84508735 MS.gene057857:intron 20.0%
!!! TTTTTAAGACTTGTATGTAA+TGG - chr4.4:84509068-84509087 None:intergenic 20.0%
! ATATGGCTCAATTATATTAC+AGG - chr4.4:84507132-84507151 None:intergenic 25.0%
! ATGATATGTGAATTTCTTGA+TGG + chr4.4:84506951-84506970 MS.gene057857:intron 25.0%
! ATTCAATCAATAGAAATCAG+TGG + chr4.4:84507071-84507090 MS.gene057857:intron 25.0%
! CAATGTTTGACTAATCTTAA+TGG + chr4.4:84508332-84508351 MS.gene057857:intron 25.0%
! CATATAAATTAGGCAAAGAA+TGG + chr4.4:84507147-84507166 MS.gene057857:intron 25.0%
! CATTCTTTGCCTAATTTATA+TGG - chr4.4:84507149-84507168 None:intergenic 25.0%
! CTAAATATTATGGTAACAGT+AGG - chr4.4:84508045-84508064 None:intergenic 25.0%
! GAAGATTATTATCCATCTTA+AGG + chr4.4:84508258-84508277 MS.gene057857:CDS 25.0%
! TATATAACAAAACTATAGCG+TGG - chr4.4:84507339-84507358 None:intergenic 25.0%
! TTCACACATTAACATTACAT+AGG + chr4.4:84507433-84507452 MS.gene057857:intron 25.0%
!! ACAAAAACTAATTTGCACAA+TGG + chr4.4:84506556-84506575 MS.gene057857:CDS 25.0%
!! ATCACATGTGTCTTATTAAA+AGG + chr4.4:84509233-84509252 MS.gene057857:intron 25.0%
!! ATTTTCTCTGTATTCTTCAA+GGG - chr4.4:84508233-84508252 None:intergenic 25.0%
!! GTAAAATTTTGAATCAACAC+AGG - chr4.4:84507565-84507584 None:intergenic 25.0%
!! TATTTTCTCTGTATTCTTCA+AGG - chr4.4:84508234-84508253 None:intergenic 25.0%
!! TTGTCTTGATACGTTTTATA+GGG + chr4.4:84509263-84509282 MS.gene057857:intron 25.0%
!! TTTTCTTGTAGAACAAATAG+AGG + chr4.4:84506623-84506642 MS.gene057857:intron 25.0%
AAATACACGATAACCAATGA+TGG - chr4.4:84508166-84508185 None:intergenic 30.0%
AACACAAATGATCAATACCT+TGG - chr4.4:84507531-84507550 None:intergenic 30.0%
AAGAATGGAGATTTCATTGA+TGG + chr4.4:84507162-84507181 MS.gene057857:intron 30.0%
AATTTAATTGTGGAGAAGTG+GGG + chr4.4:84507625-84507644 MS.gene057857:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG + chr4.4:84507623-84507642 MS.gene057857:intron 30.0%
ACACAAATGATCAATACCTT+GGG - chr4.4:84507530-84507549 None:intergenic 30.0%
AGAATGGAGATTTCATTGAT+GGG + chr4.4:84507163-84507182 MS.gene057857:intron 30.0%
ATACTGCATATTATATGCAG+GGG - chr4.4:84507672-84507691 None:intergenic 30.0%
CAATTTAATTGTGGAGAAGT+GGG + chr4.4:84507624-84507643 MS.gene057857:intron 30.0%
CAGAAATGTTTGAACAATTG+TGG + chr4.4:84508547-84508566 MS.gene057857:intron 30.0%
CATTAATTTACAAGATAGCC+AGG - chr4.4:84506911-84506930 None:intergenic 30.0%
GAACTCACACAATTTAATTG+TGG + chr4.4:84507615-84507634 MS.gene057857:intron 30.0%
GATACTGCATATTATATGCA+GGG - chr4.4:84507673-84507692 None:intergenic 30.0%
GCGGTAAAATAATGCTTATA+CGG - chr4.4:84509144-84509163 None:intergenic 30.0%
GTGTGAAAAGTTAAACTCAT+TGG - chr4.4:84507420-84507439 None:intergenic 30.0%
GTTATTTGTGGATGTAATCA+GGG + chr4.4:84507790-84507809 MS.gene057857:intron 30.0%
GTTCAAACATTTCTGCTAAA+TGG - chr4.4:84508542-84508561 None:intergenic 30.0%
TATATGTGCAAGATTGTTCA+AGG - chr4.4:84507848-84507867 None:intergenic 30.0%
TCATCTTGTATAAACAATCC+TGG + chr4.4:84506890-84506909 MS.gene057857:intron 30.0%
TCCTAAAATAGAATCATTGG+AGG - chr4.4:84506994-84507013 None:intergenic 30.0%
TCTCTGAATCTAGATCAATA+TGG + chr4.4:84507196-84507215 MS.gene057857:intron 30.0%
TGATTATTCCTCATACCTAA+AGG + chr4.4:84508091-84508110 MS.gene057857:intron 30.0%
TTACTACTTCAGATGATCTA+AGG + chr4.4:84506751-84506770 MS.gene057857:intron 30.0%
TTGAAGATCACAAAGCAAAA+TGG - chr4.4:84508123-84508142 None:intergenic 30.0%
TTTCCCATTCAAAATGTTTC+TGG - chr4.4:84509476-84509495 None:intergenic 30.0%
! ACTTCCAGAAACATTTTGAA+TGG + chr4.4:84509469-84509488 MS.gene057857:CDS 30.0%
! ACTTTATTCAGAAGCATGTT+TGG + chr4.4:84508934-84508953 MS.gene057857:CDS 30.0%
! CTTCCAGAAACATTTTGAAT+GGG + chr4.4:84509470-84509489 MS.gene057857:CDS 30.0%
! CTTGTCTTGATACGTTTTAT+AGG + chr4.4:84509262-84509281 MS.gene057857:intron 30.0%
! TAGGCAGATATAATTTTGAG+AGG + chr4.4:84507452-84507471 MS.gene057857:intron 30.0%
! TTTTCTCTGTATTCTTCAAG+GGG - chr4.4:84508232-84508251 None:intergenic 30.0%
!! AGATATATATTGGTCTTCAG+AGG + chr4.4:84508587-84508606 MS.gene057857:intron 30.0%
!! ATAATTTTGAGAGGATACTG+TGG + chr4.4:84507461-84507480 MS.gene057857:CDS 30.0%
!! ATAGTTCTAAATCACAACTG+TGG - chr4.4:84509212-84509231 None:intergenic 30.0%
!! CAAATAGAGGTATTCAAGTA+AGG + chr4.4:84506636-84506655 MS.gene057857:intron 30.0%
!! GTGTTGAGAACATTTTAAGT+TGG + chr4.4:84507099-84507118 MS.gene057857:intron 30.0%
!! TCATTGGTTATCGTGTATTT+TGG + chr4.4:84508166-84508185 MS.gene057857:CDS 30.0%
!!! TGCAAATTAGTTTTTGTAGC+AGG - chr4.4:84506553-84506572 None:intergenic 30.0%
!!! TTGAGAACATTTTAAGTTGG+TGG + chr4.4:84507102-84507121 MS.gene057857:intron 30.0%
AAAATAGAATCATTGGAGGC+TGG - chr4.4:84506990-84507009 None:intergenic 35.0%
AGGCTACTTGACCAAAAAAA+AGG - chr4.4:84507587-84507606 None:intergenic 35.0%
AGGTATTCAAGTAAGGATTC+GGG + chr4.4:84506643-84506662 MS.gene057857:intron 35.0%
AGTTGTGGAAGAGATATTGA+AGG + chr4.4:84509320-84509339 MS.gene057857:CDS 35.0%
ATATATTGGGACCACTAAAG+AGG + chr4.4:84508894-84508913 MS.gene057857:CDS 35.0%
ATATTATGGTAACAGTAGGG+AGG - chr4.4:84508041-84508060 None:intergenic 35.0%
ATGTTTGCTTCACGTAAGTA+TGG + chr4.4:84509029-84509048 MS.gene057857:intron 35.0%
GAAGCTCATTGATATTGTAG+AGG - chr4.4:84506483-84506502 None:intergenic 35.0%
GAATCTTCTGCAAACTCATT+TGG - chr4.4:84509393-84509412 None:intergenic 35.0%
GATTCATTTGTCCTCTTTAG+TGG - chr4.4:84508908-84508927 None:intergenic 35.0%
GGAATTCATTTGTCACATGA+GGG + chr4.4:84509288-84509307 MS.gene057857:CDS 35.0%
GGATACTGCATATTATATGC+AGG - chr4.4:84507674-84507693 None:intergenic 35.0%
GGTTATTTGTGGATGTAATC+AGG + chr4.4:84507789-84507808 MS.gene057857:intron 35.0%
TACTTACGTGAAGCAAACAT+CGG - chr4.4:84509029-84509048 None:intergenic 35.0%
TAGAACAACTTATTGGACTG+AGG + chr4.4:84508723-84508742 MS.gene057857:intron 35.0%
TATTATGGTAACAGTAGGGA+GGG - chr4.4:84508040-84508059 None:intergenic 35.0%
TCTATAGCAACTGGATCATA+TGG - chr4.4:84509417-84509436 None:intergenic 35.0%
TCTGGATACAATATTTCCCA+AGG + chr4.4:84507511-84507530 MS.gene057857:CDS 35.0%
TGATATTGCAGCTGCAATTT+CGG - chr4.4:84509102-84509121 None:intergenic 35.0%
TGCTTCTGAATAAAGTCTAC+AGG - chr4.4:84508930-84508949 None:intergenic 35.0%
TGGAATTCATTTGTCACATG+AGG + chr4.4:84509287-84509306 MS.gene057857:CDS 35.0%
TGTGGAATTCAACCTTAAGA+TGG - chr4.4:84508273-84508292 None:intergenic 35.0%
TTGATTTCCAGTGTAGACTT+GGG - chr4.4:84509368-84509387 None:intergenic 35.0%
! AAATTGACTAGCTCATGCTA+TGG + chr4.4:84507818-84507837 MS.gene057857:intron 35.0%
! ATTGATTTCCAGTGTAGACT+TGG - chr4.4:84509369-84509388 None:intergenic 35.0%
! CTTCAGAGGCTTTTAAATTG+CGG + chr4.4:84508601-84508620 MS.gene057857:intron 35.0%
! CTTGATACGTTTTATAGGGA+TGG + chr4.4:84509267-84509286 MS.gene057857:intron 35.0%
! GAGGTATTCAAGTAAGGATT+CGG + chr4.4:84506642-84506661 MS.gene057857:intron 35.0%
! GCAAAATGGTTGATTCCTTT+AGG - chr4.4:84508109-84508128 None:intergenic 35.0%
! GCCTCCAATGATTCTATTTT+AGG + chr4.4:84506990-84507009 MS.gene057857:intron 35.0%
! GTCTTTTCATCTATAGCAAC+TGG - chr4.4:84509426-84509445 None:intergenic 35.0%
!! TTATATAGTGTTGGCAGAAC+TGG + chr4.4:84506719-84506738 MS.gene057857:intron 35.0%
!! TTGGTTATCGTGTATTTTGG+TGG + chr4.4:84508169-84508188 MS.gene057857:CDS 35.0%
!! TTTTTGGTCAAGTAGCCTAT+TGG + chr4.4:84507589-84507608 MS.gene057857:intron 35.0%
!!! AGAACATTTTAAGTTGGTGG+TGG + chr4.4:84507105-84507124 MS.gene057857:intron 35.0%
ATTTGGATCCTCAAGGCAAT+AGG - chr4.4:84508017-84508036 None:intergenic 40.0%
CACCAATTTGAAGAATCAGC+TGG + chr4.4:84509531-84509550 MS.gene057857:CDS 40.0%
CGCAAATTCACGAAACTTTC+AGG + chr4.4:84508417-84508436 MS.gene057857:CDS 40.0%
CTGAGGTCTATAGTAATGTC+AGG + chr4.4:84508740-84508759 MS.gene057857:intron 40.0%
GATACTGTGGTTGGAATTCA+AGG + chr4.4:84507474-84507493 MS.gene057857:CDS 40.0%
GCTCATTGATATTGTAGAGG+AGG - chr4.4:84506480-84506499 None:intergenic 40.0%
TCCTGCATTCATAACTAGTG+AGG - chr4.4:84506518-84506537 None:intergenic 40.0%
TCTATTCATCCACATCCATC+TGG + chr4.4:84508199-84508218 MS.gene057857:CDS 40.0%
TGATGTTGAGCAACCATCAT+TGG + chr4.4:84508150-84508169 MS.gene057857:CDS 40.0%
TGCATTTCCAAACCATCGAA+TGG + chr4.4:84509504-84509523 MS.gene057857:CDS 40.0%
TGTGTATGTATGTGACCAGT+TGG + chr4.4:84507978-84507997 MS.gene057857:intron 40.0%
TTTGGATCCTCAAGGCAATA+GGG - chr4.4:84508016-84508035 None:intergenic 40.0%
! GGTTGATTCCTTTAGGTATG+AGG - chr4.4:84508102-84508121 None:intergenic 40.0%
! TGCCAGCTGATTCTTCAAAT+TGG - chr4.4:84509536-84509555 None:intergenic 40.0%
! TTGTGTGAGTTCTAGCCAAT+AGG - chr4.4:84507607-84507626 None:intergenic 40.0%
!! AATTGGTGATGACCATTCGA+TGG - chr4.4:84509519-84509538 None:intergenic 40.0%
!! ACAATGGAAACCGATTTGCA+GGG + chr4.4:84506572-84506591 MS.gene057857:CDS 40.0%
!! ATGTTTCTGGAAGTTCCAGT+TGG - chr4.4:84509463-84509482 None:intergenic 40.0%
!! TTTTGAGAGGATACTGTGGT+TGG + chr4.4:84507465-84507484 MS.gene057857:CDS 40.0%
ATTGAAGGTCCTCGAAGACA+CGG + chr4.4:84509335-84509354 MS.gene057857:CDS 45.0%
CATATTATATGCAGGGGCCA+GGG - chr4.4:84507666-84507685 None:intergenic 45.0%
CTACTGTCAATGTCTCCAAC+TGG + chr4.4:84509445-84509464 MS.gene057857:CDS 45.0%
GCCTCACTAGTTATGAATGC+AGG + chr4.4:84506514-84506533 MS.gene057857:CDS 45.0%
GTGATGACCATTCGATGGTT+TGG - chr4.4:84509514-84509533 None:intergenic 45.0%
GTGCCATGAGATGAATGTCA+AGG + chr4.4:84508961-84508980 MS.gene057857:CDS 45.0%
TATGCTAGTGTTGTCTCTCG+TGG + chr4.4:84507282-84507301 MS.gene057857:intron 45.0%
TGAGGGTAGCAAGATAGTTG+TGG + chr4.4:84509305-84509324 MS.gene057857:CDS 45.0%
TGATATTGTAGAGGAGGACG+AGG - chr4.4:84506474-84506493 None:intergenic 45.0%
TGTATTCTTCAAGGGGTCCA+AGG - chr4.4:84508225-84508244 None:intergenic 45.0%
TTGGATCCTCAAGGCAATAG+GGG - chr4.4:84508015-84508034 None:intergenic 45.0%
TTTCCAGAGCTTGTCGAAGA+AGG + chr4.4:84508355-84508374 MS.gene057857:intron 45.0%
TTTGTGGATGTAATCAGGGC+TGG + chr4.4:84507794-84507813 MS.gene057857:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr4.4:84507695-84507714 None:intergenic 45.0%
! TGGCCTTGACATTCATCTCA+TGG - chr4.4:84508967-84508986 None:intergenic 45.0%
!! ATAGTGTTGGCAGAACTGGA+AGG + chr4.4:84506723-84506742 MS.gene057857:intron 45.0%
!! CACAATGGAAACCGATTTGC+AGG + chr4.4:84506571-84506590 MS.gene057857:CDS 45.0%
AACTGAGCTAAGCTCACGCA+CGG + chr4.4:84507699-84507718 MS.gene057857:intron 50.0%
AAGTGCAGACCAGAGGTCAA+TGG - chr4.4:84508987-84509006 None:intergenic 50.0%
ACTGGAACCCAAGTCTACAC+TGG + chr4.4:84509358-84509377 MS.gene057857:CDS 50.0%
ATGTCAAGGCCATTGACCTC+TGG + chr4.4:84508975-84508994 MS.gene057857:CDS 50.0%
CTGGTCTGCACTTCAGCAAA+GGG + chr4.4:84508994-84509013 MS.gene057857:CDS 50.0%
CTGTTGTGTGCCCTGCAAAT+CGG - chr4.4:84506585-84506604 None:intergenic 50.0%
GCATATTATATGCAGGGGCC+AGG - chr4.4:84507667-84507686 None:intergenic 50.0%
GCGGTCTATAACCGCAATTG+TGG + chr4.4:84508620-84508639 MS.gene057857:intron 50.0%
GGTAACAGTAGGGAGGGATT+TGG - chr4.4:84508034-84508053 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr4.4:84507696-84507715 None:intergenic 50.0%
TCTGGTCTGCACTTCAGCAA+AGG + chr4.4:84508993-84509012 MS.gene057857:CDS 50.0%
TGAATTTGCGCCTCGTTGAC+TGG - chr4.4:84508407-84508426 None:intergenic 50.0%
TTTGCTGAAGTGCAGACCAG+AGG - chr4.4:84508994-84509013 None:intergenic 50.0%
! AATGGGGACTAGTGCTGTTG+CGG - chr4.4:84508646-84508665 None:intergenic 50.0%
! GAATTCAAGGCGTGCTGTTC+AGG + chr4.4:84507487-84507506 MS.gene057857:CDS 50.0%
ACTGAGCTAAGCTCACGCAC+GGG + chr4.4:84507700-84507719 MS.gene057857:intron 55.0%
CAGTTCTCCTCCAGTCAACG+AGG + chr4.4:84508394-84508413 MS.gene057857:CDS 55.0%
CATCCACATCCATCTGGCCT+TGG + chr4.4:84508205-84508224 MS.gene057857:CDS 55.0%
CCTCAAGGCAATAGGGGCTT+CGG - chr4.4:84508009-84508028 None:intergenic 55.0%
CGATTTGCAGGGCACACAAC+AGG + chr4.4:84506583-84506602 MS.gene057857:CDS 55.0%
CGGGTGCAACTGTTCGCATT+AGG + chr4.4:84506662-84506681 MS.gene057857:intron 55.0%
GAGCCTTCTTCGACAAGCTC+TGG - chr4.4:84508361-84508380 None:intergenic 55.0%
GGGAGGGATTTGGATCCTCA+AGG - chr4.4:84508024-84508043 None:intergenic 55.0%
GTGCGTGAGCTTAGCTCAGT+TGG - chr4.4:84507700-84507719 None:intergenic 55.0%
TCAGCTGGCACAAACCAGCA+AGG + chr4.4:84509546-84509565 MS.gene057857:CDS 55.0%
TGCTGTTGCGGCCACAATTG+CGG - chr4.4:84508634-84508653 None:intergenic 55.0%
! AAGGCGTGCTGTTCAGGTTC+TGG + chr4.4:84507493-84507512 MS.gene057857:CDS 55.0%
! ATTTGCGCCTCGTTGACTGG+AGG - chr4.4:84508404-84508423 None:intergenic 55.0%
! TTGTGGAGAAGTGGGGTGTC+CGG + chr4.4:84507632-84507651 MS.gene057857:intron 55.0%
AGGTCCTCGAAGACACGGAC+TGG + chr4.4:84509340-84509359 MS.gene057857:CDS 60.0%
CCGAAGCCCCTATTGCCTTG+AGG + chr4.4:84508006-84508025 MS.gene057857:intron 60.0%
CTGAGCTAAGCTCACGCACG+GGG + chr4.4:84507701-84507720 MS.gene057857:intron 60.0%
GGGGCTTCGGATGATCCAAC+TGG - chr4.4:84507996-84508015 None:intergenic 60.0%
GGTCCAAGGCCAGATGGATG+TGG - chr4.4:84508211-84508230 None:intergenic 60.0%
GGTTCCAGTCCGTGTCTTCG+AGG - chr4.4:84509347-84509366 None:intergenic 60.0%
TCAAGGGGTCCAAGGCCAGA+TGG - chr4.4:84508217-84508236 None:intergenic 60.0%
! TGTGGAGAAGTGGGGTGTCC+GGG + chr4.4:84507633-84507652 MS.gene057857:intron 60.0%
! GTGGAGAAGTGGGGTGTCCG+GGG + chr4.4:84507634-84507653 MS.gene057857:intron 65.0%
AGGGGCCAGGGTTCGAACCC+CGG - chr4.4:84507654-84507673 None:intergenic 70.0%
GGTGTCCGGGGTTCGAACCC+TGG + chr4.4:84507646-84507665 MS.gene057857:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 84506457 84509575 84506457 ID=MS.gene057857
chr4.4 mRNA 84506457 84509575 84506457 ID=MS.gene057857.t1;Parent=MS.gene057857
chr4.4 exon 84506457 84506604 84506457 ID=MS.gene057857.t1.exon1;Parent=MS.gene057857.t1
chr4.4 CDS 84506457 84506604 84506457 ID=cds.MS.gene057857.t1;Parent=MS.gene057857.t1
chr4.4 exon 84507459 84507532 84507459 ID=MS.gene057857.t1.exon2;Parent=MS.gene057857.t1
chr4.4 CDS 84507459 84507532 84507459 ID=cds.MS.gene057857.t1;Parent=MS.gene057857.t1
chr4.4 exon 84508148 84508279 84508148 ID=MS.gene057857.t1.exon3;Parent=MS.gene057857.t1
chr4.4 CDS 84508148 84508279 84508148 ID=cds.MS.gene057857.t1;Parent=MS.gene057857.t1
chr4.4 exon 84508362 84508438 84508362 ID=MS.gene057857.t1.exon4;Parent=MS.gene057857.t1
chr4.4 CDS 84508362 84508438 84508362 ID=cds.MS.gene057857.t1;Parent=MS.gene057857.t1
chr4.4 exon 84508892 84509041 84508892 ID=MS.gene057857.t1.exon5;Parent=MS.gene057857.t1
chr4.4 CDS 84508892 84509041 84508892 ID=cds.MS.gene057857.t1;Parent=MS.gene057857.t1
chr4.4 exon 84509284 84509575 84509284 ID=MS.gene057857.t1.exon6;Parent=MS.gene057857.t1
chr4.4 CDS 84509284 84509575 84509284 ID=cds.MS.gene057857.t1;Parent=MS.gene057857.t1
Gene Sequence

>MS.gene057857

ATGCGTTTGGTGGTCCTCGTCCTCCTCTACAATATCAATGAGCTTCAAGATGAACTTGCCTCACTAGTTATGAATGCAGGATTTCGATTAAAACCTGCTACAAAAACTAATTTGCACAATGGAAACCGATTTGCAGGGCACACAACAGGTCTATTCAAGTCATATATTTTCTTGTAGAACAAATAGAGGTATTCAAGTAAGGATTCGGGTGCAACTGTTCGCATTAGGCATCAGCACAACATTGAATTAGATGACTTGATTTTTATATAGTGTTGGCAGAACTGGAAGGAAAATTTACTACTTCAGATGATCTAAGGATGTTATATTCTTACTTGATTTTAATATCAAACTTGTGTCTAGTAGACTTTCGTTTGTTACTCAATCTGCTTTTATGTGCTTAGAATGTTAATTAAGTAAGGATTAACTGTTAAACTCATCTTGTATAAACAATCCTGGCTATCTTGTAAATTAATGACATTTAGTTTTTATTCATTATGATATGTGAATTTCTTGATGGCACAATCATGAAACCAGCCTCCAATGATTCTATTTTAGGATTAAAAAGAAAATAATATTCTATGAATATAAATAATATTCTATGAATATATAAAAACATTCAATCAATAGAAATCAGTGGTCACAGTGTTGAGAACATTTTAAGTTGGTGGTGGTCCTGTAATATAATTGAGCCATATAAATTAGGCAAAGAATGGAGATTTCATTGATGGGATTTTTGTAATCTCTGAATCTAGATCAATATGGTATGATATTAAGAGATGAGTGTATAGATAAAATTTGTATAAACAGAAAAAATGTTCTAGTGTCTATGCTAGTGTTGTCTCTCGTGGACAGTGAAAATAACAGTTTGTTCAAATTTCACCACGCTATAGTTTTGTTATATAAATAGTGTGTCTTGAAATAATAGTGATTTGTTCAAATTTCTCTATAGCATTTTTATGGCCAATGAGTTTAACTTTTCACACATTAACATTACATAGGCAGATATAATTTTGAGAGGATACTGTGGTTGGAATTCAAGGCGTGCTGTTCAGGTTCTGGATACAATATTTCCCAAGGTATTGATCATTTGTGTTAATCATACATGCCTGTGTTGATTCAAAATTTTACCTTTTTTTTGGTCAAGTAGCCTATTGGCTAGAACTCACACAATTTAATTGTGGAGAAGTGGGGTGTCCGGGGTTCGAACCCTGGCCCCTGCATATAATATGCAGTATCCCTACCAACTGAGCTAAGCTCACGCACGGGGATCAAAATTTTACCTTTTTATTAAGCATGAATATTTTTGTTCTTTTTTCATTATGATTAATTTATGGTTATTTGTGGATGTAATCAGGGCTGGTAAATTGACTAGCTCATGCTATGGACTACCTTGAACAATCTTGCACATATAAACTTAGAACTGATCATATATATATTACGAACATCCTGTTTTAAAAATTTAAGAAATGAAATGCATCATATTAAACTTGTTATCACAATTACAATATGTGTAAGCATATGTGTGTATGTATGTGACCAGTTGGATCATCCGAAGCCCCTATTGCCTTGAGGATCCAAATCCCTCCCTACTGTTACCATAATATTTAGATTCATTTTGGTCGATGTGATTACTTTGATTATTCCTCATACCTAAAGGAATCAACCATTTTGCTTTGTGATCTTCAAAACAGAATGATGTTGAGCAACCATCATTGGTTATCGTGTATTTTGGTGGCAATGATTCTATTCATCCACATCCATCTGGCCTTGGACCCCTTGAAGAATACAGAGAAAATATGAAGAAGATTATTATCCATCTTAAGGTTGAATTCCACACTATCATTGTTTTTTATTTATTTGTCATGTTTATACTAACAATGTTTGACTAATCTTAATGGTTTCCAGAGCTTGTCGAAGAAGGCTCGCATAATATTGCTCAGTTCTCCTCCAGTCAACGAGGCGCAAATTCACGAAACTTTCAGGTTCTGATTGCAATGACTTTTTGTTCATTCATACTTTATAGTTGTGATGCCTTTTATATATGCTATGTGATTGAATAATGAAGCATAACTTATATAGGTACCATTTAGCAGAAATGTTTGAACAATTGTGGTCTTATATAGTTACATGAGATATATATTGGTCTTCAGAGGCTTTTAAATTGCGGTCTATAACCGCAATTGTGGCCGCAACAGCACTAGTCCCCATTTTTCTACAATATCAATGACTGCAATGTCACTGCGACTGTACATCGAAACCTTTTCTTTAGAACAACTTATTGGACTGAGGTCTATAGTAATGTCAGGTGATCTTGTATTTAAGCTAACATGATCTGAATCAATTTTGAACAACTTTGATTTTCTTATTACATGATACTATTCAAGATACATTTCAGTCATAAAACTCTAATGAATCAATTATTGTACTTAAAGCAGTAATATATTGGGACCACTAAAGAGGACAAATGAATCCTGTAGACTTTATTCAGAAGCATGTTTGGACTTGTGCCATGAGATGAATGTCAAGGCCATTGACCTCTGGTCTGCACTTCAGCAAAGGGATGATTGCTCCGATGTTTGCTTCACGTAAGTATGGTTTATGATAATTGCCATTACATACAAGTCTTAAAAATAGGTGCACATCCGAAATTGCAGCTGCAATATCAAGTTCTTATGTTTTTACAGCCGTATAAGCATTATTTTACCGCATTTTTTAACCACATTTTTCTATAGTATTAAGGATCGCGATGCGACCACAGTTGTGATTTAGAACTATGATCACATGTGTCTTATTAAAAGGCTCAAACTTGTCTTGATACGTTTTATAGGGATGGAATTCATTTGTCACATGAGGGTAGCAAGATAGTTGTGGAAGAGATATTGAAGGTCCTCGAAGACACGGACTGGAACCCAAGTCTACACTGGAAATCAATGCCAAATGAGTTTGCAGAAGATTCGCCATATGATCCAGTTGCTATAGATGAAAAGACTACTGTCAATGTCTCCAACTGGAACTTCCAGAAACATTTTGAATGGGAAAAAGCTTTGTGCATTTCCAAACCATCGAATGGTCATCACCAATTTGAAGAATCAGCTGGCACAAACCAGCAAGGTCTATAA

Protein sequence

>MS.gene057857.t1

MRLVVLVLLYNINELQDELASLVMNAGFRLKPATKTNLHNGNRFAGHTTDIILRGYCGWNSRRAVQVLDTIFPKNDVEQPSLVIVYFGGNDSIHPHPSGLGPLEEYRENMKKIIIHLKSLSKKARIILLSSPPVNEAQIHETFSNILGPLKRTNESCRLYSEACLDLCHEMNVKAIDLWSALQQRDDCSDVCFTDGIHLSHEGSKIVVEEILKVLEDTDWNPSLHWKSMPNEFAEDSPYDPVAIDEKTTVNVSNWNFQKHFEWEKALCISKPSNGHHQFEESAGTNQQGL