Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94908.t1 | XP_024627594.1 | 89.7 | 234 | 23 | 1 | 6 | 239 | 4 | 236 | 7.40E-107 | 396.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94908.t1 | O81223 | 60.1 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 4.9e-67 | 255.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94908.t1 | G8A2Y4 | 89.7 | 234 | 23 | 1 | 6 | 239 | 4 | 236 | 5.3e-107 | 396.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049680 | MS.gene94908 | 0.817595 | 3.04E-52 | -1.69E-46 |
| MS.gene051699 | MS.gene94908 | 0.810056 | 1.39E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene94908 | 0.816259 | 6.06E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene94908 | 0.814427 | 1.55E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene94908 | 0.843124 | 1.70E-58 | -1.69E-46 |
| MS.gene054222 | MS.gene94908 | 0.802878 | 4.55E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene94908 | 0.818079 | 2.36E-52 | -1.69E-46 |
| MS.gene05548 | MS.gene94908 | 0.808689 | 2.74E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene94908 | 0.83453 | 2.84E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene94908 | 0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene94908 | 0.825631 | 4.22E-54 | -1.69E-46 |
| MS.gene058159 | MS.gene94908 | 0.812351 | 4.43E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene94908 | 0.819538 | 1.10E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene94908 | -0.835193 | 1.94E-56 | -1.69E-46 |
| MS.gene059901 | MS.gene94908 | -0.805929 | 1.05E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene94908 | 0.819443 | 1.16E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94908.t1 | MTR_8g027620 | 94.142 | 239 | 11 | 2 | 1 | 239 | 1 | 236 | 6.19e-161 | 447 |
| MS.gene94908.t1 | MTR_3g091440 | 69.388 | 196 | 60 | 0 | 42 | 237 | 17 | 212 | 1.32e-94 | 276 |
| MS.gene94908.t1 | MTR_3g091440 | 66.842 | 190 | 63 | 0 | 48 | 237 | 24 | 213 | 1.91e-87 | 258 |
| MS.gene94908.t1 | MTR_8g099575 | 62.051 | 195 | 74 | 0 | 42 | 236 | 16 | 210 | 9.69e-84 | 248 |
| MS.gene94908.t1 | MTR_4g099210 | 56.923 | 195 | 84 | 0 | 42 | 236 | 16 | 210 | 7.87e-77 | 231 |
| MS.gene94908.t1 | MTR_1g016430 | 57.216 | 194 | 83 | 0 | 41 | 234 | 54 | 247 | 3.34e-75 | 228 |
| MS.gene94908.t1 | MTR_3g060730 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 1.96e-74 | 225 |
| MS.gene94908.t1 | MTR_4g134250 | 55.208 | 192 | 86 | 0 | 46 | 237 | 36 | 227 | 2.33e-74 | 225 |
| MS.gene94908.t1 | MTR_5g096420 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 5.77e-74 | 224 |
| MS.gene94908.t1 | MTR_8g099570 | 52.551 | 196 | 93 | 0 | 42 | 237 | 58 | 253 | 2.99e-72 | 221 |
| MS.gene94908.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 1 | 181 | 1.15e-71 | 217 |
| MS.gene94908.t1 | MTR_2g027500 | 49.315 | 219 | 101 | 1 | 19 | 237 | 16 | 224 | 1.39e-71 | 218 |
| MS.gene94908.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 54 | 237 | 5 | 188 | 1.03e-70 | 214 |
| MS.gene94908.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 99 | 279 | 1.63e-70 | 217 |
| MS.gene94908.t1 | MTR_2g027440 | 53.226 | 186 | 87 | 0 | 51 | 236 | 43 | 228 | 1.74e-66 | 205 |
| MS.gene94908.t1 | MTR_3g091440 | 71.631 | 141 | 40 | 0 | 42 | 182 | 17 | 157 | 3.57e-65 | 200 |
| MS.gene94908.t1 | MTR_2g027480 | 52.688 | 186 | 88 | 0 | 51 | 236 | 43 | 228 | 6.94e-65 | 201 |
| MS.gene94908.t1 | MTR_8g016170 | 51.562 | 192 | 93 | 0 | 47 | 238 | 66 | 257 | 4.72e-63 | 197 |
| MS.gene94908.t1 | MTR_2g027520 | 49.741 | 193 | 97 | 0 | 47 | 239 | 41 | 233 | 8.74e-63 | 196 |
| MS.gene94908.t1 | MTR_5g013560 | 49.231 | 195 | 88 | 1 | 42 | 236 | 15 | 198 | 1.07e-59 | 187 |
| MS.gene94908.t1 | MTR_8g016170 | 53.488 | 172 | 80 | 0 | 47 | 218 | 47 | 218 | 5.95e-58 | 183 |
| MS.gene94908.t1 | MTR_4g113505 | 45.109 | 184 | 101 | 0 | 53 | 236 | 6 | 189 | 7.90e-54 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94908.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 2.35e-90 | 266 |
| MS.gene94908.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 2.35e-90 | 266 |
| MS.gene94908.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 2.35e-90 | 266 |
| MS.gene94908.t1 | AT5G24270 | 63.441 | 186 | 68 | 0 | 51 | 236 | 4 | 189 | 2.31e-83 | 247 |
| MS.gene94908.t1 | AT1G64480 | 60.513 | 195 | 77 | 0 | 42 | 236 | 20 | 214 | 2.95e-79 | 237 |
| MS.gene94908.t1 | AT1G64480 | 60.513 | 195 | 77 | 0 | 42 | 236 | 20 | 214 | 2.95e-79 | 237 |
| MS.gene94908.t1 | AT1G64480 | 60.513 | 195 | 77 | 0 | 42 | 236 | 20 | 214 | 2.95e-79 | 237 |
| MS.gene94908.t1 | AT4G33000 | 57.732 | 194 | 82 | 0 | 43 | 236 | 53 | 246 | 7.20e-75 | 227 |
| MS.gene94908.t1 | AT4G33000 | 57.732 | 194 | 82 | 0 | 43 | 236 | 63 | 256 | 1.55e-74 | 227 |
| MS.gene94908.t1 | AT5G47100 | 56.316 | 190 | 83 | 0 | 47 | 236 | 21 | 210 | 1.50e-73 | 223 |
| MS.gene94908.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 3.05e-73 | 222 |
| MS.gene94908.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 3.05e-73 | 222 |
| MS.gene94908.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 3.05e-73 | 222 |
| MS.gene94908.t1 | AT5G24270 | 62.733 | 161 | 60 | 0 | 76 | 236 | 7 | 167 | 4.82e-73 | 220 |
| MS.gene94908.t1 | AT4G26570 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 5.77e-73 | 222 |
| MS.gene94908.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 1.23e-71 | 218 |
| MS.gene94908.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 1.23e-71 | 218 |
| MS.gene94908.t1 | AT1G64480 | 61.017 | 177 | 69 | 0 | 42 | 218 | 20 | 196 | 6.99e-71 | 215 |
| MS.gene94908.t1 | AT4G26570 | 52.764 | 199 | 90 | 1 | 43 | 237 | 32 | 230 | 1.02e-70 | 216 |
| MS.gene94908.t1 | AT4G17615 | 55.249 | 181 | 81 | 0 | 42 | 222 | 16 | 196 | 7.97e-66 | 204 |
| MS.gene94908.t1 | AT4G01420 | 49.246 | 199 | 101 | 0 | 31 | 229 | 4 | 202 | 8.86e-64 | 197 |
| MS.gene94908.t1 | AT4G16350 | 47.642 | 212 | 98 | 2 | 28 | 239 | 24 | 222 | 1.82e-61 | 192 |
| MS.gene94908.t1 | AT4G16350 | 47.642 | 212 | 98 | 2 | 28 | 239 | 24 | 222 | 1.82e-61 | 192 |
| MS.gene94908.t1 | AT4G01420 | 49.468 | 188 | 95 | 0 | 31 | 218 | 4 | 191 | 6.45e-60 | 187 |
| MS.gene94908.t1 | AT4G17615 | 54.140 | 157 | 72 | 0 | 80 | 236 | 12 | 168 | 8.63e-60 | 186 |
| MS.gene94908.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 61 | 237 | 25 | 214 | 1.14e-54 | 175 |
| MS.gene94908.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 47 | 184 | 21 | 158 | 9.01e-48 | 155 |
| MS.gene94908.t1 | AT4G33000 | 54.861 | 144 | 65 | 0 | 43 | 186 | 53 | 196 | 1.53e-47 | 156 |
| MS.gene94908.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 2.33e-47 | 155 |
| MS.gene94908.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 2.33e-47 | 155 |
| MS.gene94908.t1 | AT4G33000 | 55.435 | 92 | 41 | 0 | 43 | 134 | 53 | 144 | 2.59e-25 | 97.8 |
Find 36 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.1:-74556841 | None:intergenic |
| TTCTGCGTTCAGCATAAAAC+TGG | 0.307181 | 8.1:-74557557 | None:intergenic |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8.1:+74555407 | MS.gene94908:CDS |
| GGAGATGGTGTTGATGGTTT+TGG | 0.329380 | 8.1:+74557165 | MS.gene94908:CDS |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.1:-74556795 | None:intergenic |
| AACAACGGCCATATAGAGTT+TGG | 0.408503 | 8.1:+74556787 | MS.gene94908:CDS |
| GGCGAATTTATCAGATCCTT+GGG | 0.409624 | 8.1:+74556808 | MS.gene94908:CDS |
| TTATATGACTTGAGGCATAC+TGG | 0.414238 | 8.1:+74557029 | MS.gene94908:CDS |
| TGGCGAATTTATCAGATCCT+TGG | 0.418944 | 8.1:+74556807 | MS.gene94908:CDS |
| GTTGAAGGAGATGGTGTTGA+TGG | 0.420723 | 8.1:+74557159 | MS.gene94908:intron |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.1:-74557412 | None:intergenic |
| AAACTACGAGTGTGATTCTT+CGG | 0.440928 | 8.1:-74557581 | None:intergenic |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.1:-74555436 | None:intergenic |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8.1:-74557439 | None:intergenic |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.1:+74556098 | MS.gene94908:CDS |
| GCGAAACCTCTTTGTGGATA+GGG | 0.504445 | 8.1:+74556351 | MS.gene94908:CDS |
| TTTGGTTCTCTCTGATGATG+TGG | 0.519964 | 8.1:+74557198 | MS.gene94908:CDS |
| AAACAAGCGAAACCTCTTTG+TGG | 0.525654 | 8.1:+74556345 | MS.gene94908:CDS |
| TTTCTAGAAACAGACACAAA+AGG | 0.529093 | 8.1:+74557340 | MS.gene94908:CDS |
| GAAGAATGGAGTGAATATGT+TGG | 0.530325 | 8.1:+74557382 | MS.gene94908:CDS |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.1:+74555411 | MS.gene94908:CDS |
| AGCGAAACCTCTTTGTGGAT+AGG | 0.555448 | 8.1:+74556350 | MS.gene94908:CDS |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | 8.1:+74557021 | MS.gene94908:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.1:+74555426 | MS.gene94908:CDS |
| AAATTTACAGTTGAAGGAGA+TGG | 0.569253 | 8.1:+74557150 | MS.gene94908:intron |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.1:+74556083 | MS.gene94908:intron |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | 8.1:-74555521 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.1:+74557219 | MS.gene94908:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.615893 | 8.1:-74556357 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.1:+74557213 | MS.gene94908:CDS |
| GAAACAGACACAAAAGGTGA+CGG | 0.637440 | 8.1:+74557346 | MS.gene94908:CDS |
| TCTGCGTTCAGCATAAAACT+GGG | 0.644374 | 8.1:-74557556 | None:intergenic |
| CTCTTCGATGTCAATAACAA+CGG | 0.649512 | 8.1:+74556772 | MS.gene94908:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.1:+74556086 | MS.gene94908:intron |
| TGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.1:+74557049 | MS.gene94908:CDS |
| TTTAGGATGAAAGATGCCCA+AGG | 0.697078 | 8.1:-74556824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCACTTTATAAATTTTATA+AGG | + | chr8.1:74557273-74557292 | MS.gene94908:intron | 10.0% |
| !! | AACAAAAAAAAAACATGAAA+AGG | - | chr8.1:74555561-74555580 | None:intergenic | 15.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.1:74555747-74555766 | MS.gene94908:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8.1:74555726-74555745 | None:intergenic | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.1:74555748-74555767 | MS.gene94908:intron | 15.0% |
| !! | TCAAAAAAAAAAACATGAAA+AGG | + | chr8.1:74555626-74555645 | MS.gene94908:intron | 15.0% |
| !!! | AAAGTTTCTTATATATGTTT+TGG | + | chr8.1:74557296-74557315 | MS.gene94908:intron | 15.0% |
| !!! | AAGTTTCTTATATATGTTTT+GGG | + | chr8.1:74557297-74557316 | MS.gene94908:intron | 15.0% |
| !!! | AATTTTTGATTCTAATTTCA+GGG | + | chr8.1:74557516-74557535 | MS.gene94908:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | - | chr8.1:74557442-74557461 | None:intergenic | 15.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8.1:74555407-74555426 | MS.gene94908:CDS | 20.0% |
| !! | ATAAACAAGTTAAATTTCCA+AGG | - | chr8.1:74555585-74555604 | None:intergenic | 20.0% |
| !! | GCTATTCATATATATACAAT+TGG | - | chr8.1:74556034-74556053 | None:intergenic | 20.0% |
| !! | TATGCATATATAAGTCATTT+GGG | + | chr8.1:74556942-74556961 | MS.gene94908:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.1:74555749-74555768 | MS.gene94908:intron | 20.0% |
| !! | TTATGCATATATAAGTCATT+TGG | + | chr8.1:74556941-74556960 | MS.gene94908:intron | 20.0% |
| !!! | AGTTTCTTATATATGTTTTG+GGG | + | chr8.1:74557298-74557317 | MS.gene94908:intron | 20.0% |
| !!! | CAATTTTTGATTCTAATTTC+AGG | + | chr8.1:74557515-74557534 | MS.gene94908:intron | 20.0% |
| !!! | TGACAATTGTTTAAATGTTT+TGG | + | chr8.1:74557118-74557137 | MS.gene94908:intron | 20.0% |
| ! | AAACACTTGTGAAACTATTT+GGG | + | chr8.1:74555829-74555848 | MS.gene94908:intron | 25.0% |
| ! | AAATAGTTTCACAAGTGTTT+AGG | - | chr8.1:74555829-74555848 | None:intergenic | 25.0% |
| ! | ACATGAAAATTTACAGTTGA+AGG | + | chr8.1:74557144-74557163 | MS.gene94908:intron | 25.0% |
| ! | CATATATATACAATTGGTGA+TGG | - | chr8.1:74556028-74556047 | None:intergenic | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | + | chr8.1:74557021-74557040 | MS.gene94908:CDS | 25.0% |
| ! | GAAATAAGCATGTAAGTATT+TGG | + | chr8.1:74556516-74556535 | MS.gene94908:intron | 25.0% |
| ! | GTGTGATTTAGATAATTTCA+TGG | + | chr8.1:74555675-74555694 | MS.gene94908:intron | 25.0% |
| ! | TAAACACTTGTGAAACTATT+TGG | + | chr8.1:74555828-74555847 | MS.gene94908:intron | 25.0% |
| ! | TCGTGGTAAAAATTGAATTT+GGG | - | chr8.1:74556680-74556699 | None:intergenic | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.1:74556291-74556310 | MS.gene94908:intron | 25.0% |
| ! | TTCGTGGTAAAAATTGAATT+TGG | - | chr8.1:74556681-74556700 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.1:74556152-74556171 | MS.gene94908:CDS | 25.0% |
| !! | GATAATTTCATGGATTACTT+TGG | + | chr8.1:74555685-74555704 | MS.gene94908:intron | 25.0% |
| !! | TCATTTTCTTTTACTTGTGA+AGG | - | chr8.1:74555468-74555487 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTTTTGTTGCCT+TGG | + | chr8.1:74555565-74555584 | MS.gene94908:intron | 25.0% |
| !!! | GTTTCTTATATATGTTTTGG+GGG | + | chr8.1:74557299-74557318 | MS.gene94908:intron | 25.0% |
| !!! | TTTCTTATATATGTTTTGGG+GGG | + | chr8.1:74557300-74557319 | MS.gene94908:intron | 25.0% |
| AAATTTACAGTTGAAGGAGA+TGG | + | chr8.1:74557150-74557169 | MS.gene94908:intron | 30.0% | |
| AGCACAGTTATTGTGAAAAA+TGG | + | chr8.1:74556138-74556157 | MS.gene94908:CDS | 30.0% | |
| ATCCAAACAGAACCTTAAAT+TGG | + | chr8.1:74555950-74555969 | MS.gene94908:intron | 30.0% | |
| ATCGGATGTGAATAAAAAAG+AGG | - | chr8.1:74556652-74556671 | None:intergenic | 30.0% | |
| GGTAAAAATTGAATTTGGGA+TGG | - | chr8.1:74556676-74556695 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8.1:74555411-74555430 | MS.gene94908:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.1:74556798-74556817 | None:intergenic | 30.0% | |
| TGTTTGCATAAACGAAAACA+CGG | - | chr8.1:74555987-74556006 | None:intergenic | 30.0% | |
| TTGTTAGGAAGAGCTTATTT+GGG | + | chr8.1:74556483-74556502 | MS.gene94908:intron | 30.0% | |
| ! | AACCAATTTAAGGTTCTGTT+TGG | - | chr8.1:74555955-74555974 | None:intergenic | 30.0% |
| ! | AATTGAATTTGGGATGGAAT+CGG | - | chr8.1:74556670-74556689 | None:intergenic | 30.0% |
| ! | GAAAAATTGACTTCGAAGAA+TGG | + | chr8.1:74557368-74557387 | MS.gene94908:CDS | 30.0% |
| ! | TTTCTAGAAACAGACACAAA+AGG | + | chr8.1:74557340-74557359 | MS.gene94908:CDS | 30.0% |
| !! | ATTATCAACACTTGTTTTCG+TGG | - | chr8.1:74556697-74556716 | None:intergenic | 30.0% |
| !! | CACTTTGCTCTTTTTAGAAA+CGG | + | chr8.1:74556322-74556341 | MS.gene94908:CDS | 30.0% |
| !! | CATATTATTTTGTCTGCTTG+AGG | - | chr8.1:74556853-74556872 | None:intergenic | 30.0% |
| !! | TATATACAATTGGTGATGGA+TGG | - | chr8.1:74556024-74556043 | None:intergenic | 30.0% |
| AACAACTTCTGAATGGCATT+TGG | - | chr8.1:74556468-74556487 | None:intergenic | 35.0% | |
| AAGAGGATGAAGAGAATGAA+CGG | - | chr8.1:74556635-74556654 | None:intergenic | 35.0% | |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.1:74555782-74555801 | None:intergenic | 35.0% | |
| AATGCCATTCAGAAGTTGTT+AGG | + | chr8.1:74556468-74556487 | MS.gene94908:intron | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.1:74556206-74556225 | MS.gene94908:intron | 35.0% | |
| AGAGAAGAGTTTCAGAACAA+TGG | - | chr8.1:74556059-74556078 | None:intergenic | 35.0% | |
| CTCTTCGATGTCAATAACAA+CGG | + | chr8.1:74556772-74556791 | MS.gene94908:CDS | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.1:74557483-74557502 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.1:74557382-74557401 | MS.gene94908:CDS | 35.0% | |
| GGAAGCTTCAGATAATTTCA+TGG | + | chr8.1:74555647-74555666 | MS.gene94908:intron | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | - | chr8.1:74555540-74555559 | None:intergenic | 35.0% | |
| GGTGGAAATGAACCAATTTA+AGG | - | chr8.1:74555965-74555984 | None:intergenic | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.1:74557415-74557434 | None:intergenic | 35.0% | |
| GTTGTTAGGAAGAGCTTATT+TGG | + | chr8.1:74556482-74556501 | MS.gene94908:intron | 35.0% | |
| GTTTGCATAAACGAAAACAC+GGG | - | chr8.1:74555986-74556005 | None:intergenic | 35.0% | |
| TATATTGTACGAAAGACCAC+AGG | - | chr8.1:74557083-74557102 | None:intergenic | 35.0% | |
| TCACCACGTAAAATTCTTCT+TGG | + | chr8.1:74556992-74557011 | MS.gene94908:intron | 35.0% | |
| TCTTCCTAACAACTTCTGAA+TGG | - | chr8.1:74556475-74556494 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.1:74557213-74557232 | MS.gene94908:CDS | 35.0% | |
| TTAGAGCTAACAATCAGTTC+TGG | + | chr8.1:74555904-74555923 | MS.gene94908:intron | 35.0% | |
| TTATATGACTTGAGGCATAC+TGG | + | chr8.1:74557029-74557048 | MS.gene94908:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.1:74555776-74555795 | MS.gene94908:intron | 35.0% |
| !!! | CATGGATTACTTTGGTTTTG+TGG | + | chr8.1:74555693-74555712 | MS.gene94908:intron | 35.0% |
| !!! | GGCATTTGGCATAAGTTTTT+TGG | - | chr8.1:74556454-74556473 | None:intergenic | 35.0% |
| !!! | GGTTTTGGTTGAATCTGATT+TGG | + | chr8.1:74557180-74557199 | MS.gene94908:CDS | 35.0% |
| AAACAAGCGAAACCTCTTTG+TGG | + | chr8.1:74556345-74556364 | MS.gene94908:CDS | 40.0% | |
| AACAACGGCCATATAGAGTT+TGG | + | chr8.1:74556787-74556806 | MS.gene94908:CDS | 40.0% | |
| AGAGGATGAAGAGAATGAAC+GGG | - | chr8.1:74556634-74556653 | None:intergenic | 40.0% | |
| AGATGATCAACATCCTGGAA+TGG | - | chr8.1:74556922-74556941 | None:intergenic | 40.0% | |
| AGCTGTTTGTTTACCATTCC+AGG | + | chr8.1:74556906-74556925 | MS.gene94908:intron | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.1:74555439-74555458 | None:intergenic | 40.0% | |
| GAAACAGACACAAAAGGTGA+CGG | + | chr8.1:74557346-74557365 | MS.gene94908:CDS | 40.0% | |
| GAAGAGATCAAACATCTGCA+TGG | - | chr8.1:74556758-74556777 | None:intergenic | 40.0% | |
| GCATAAGATGATCAACATCC+TGG | - | chr8.1:74556927-74556946 | None:intergenic | 40.0% | |
| GGCGAATTTATCAGATCCTT+GGG | + | chr8.1:74556808-74556827 | MS.gene94908:CDS | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.1:74557219-74557238 | MS.gene94908:CDS | 40.0% | |
| TCTGCGTTCAGCATAAAACT+GGG | - | chr8.1:74557559-74557578 | None:intergenic | 40.0% | |
| TGGCGAATTTATCAGATCCT+TGG | + | chr8.1:74556807-74556826 | MS.gene94908:CDS | 40.0% | |
| TTCTGCGTTCAGCATAAAAC+TGG | - | chr8.1:74557560-74557579 | None:intergenic | 40.0% | |
| ! | CTGCCAAGAAGAATTTTACG+TGG | - | chr8.1:74556998-74557017 | None:intergenic | 40.0% |
| ! | TTTAGGATGAAAGATGCCCA+AGG | - | chr8.1:74556827-74556846 | None:intergenic | 40.0% |
| !! | TTTGGTTCTCTCTGATGATG+TGG | + | chr8.1:74557198-74557217 | MS.gene94908:CDS | 40.0% |
| AGCGAAACCTCTTTGTGGAT+AGG | + | chr8.1:74556350-74556369 | MS.gene94908:CDS | 45.0% | |
| AGGGGTTGCATACCATCTTA+AGG | + | chr8.1:74555767-74555786 | MS.gene94908:intron | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.1:74555426-74555445 | MS.gene94908:CDS | 45.0% | |
| CGAAGAGGTAAATACTCCTG+TGG | + | chr8.1:74557064-74557083 | MS.gene94908:intron | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.1:74556098-74556117 | MS.gene94908:CDS | 45.0% | |
| GCGAAACCTCTTTGTGGATA+GGG | + | chr8.1:74556351-74556370 | MS.gene94908:CDS | 45.0% | |
| GGGGTTGCATACCATCTTAA+GGG | + | chr8.1:74555768-74555787 | MS.gene94908:intron | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | - | chr8.1:74555524-74555543 | None:intergenic | 45.0% | |
| TGCATAAACGAAAACACGGG+TGG | - | chr8.1:74555983-74556002 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.1:74556360-74556379 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.1:74556844-74556863 | None:intergenic | 45.0% | |
| ! | GTTGAAGGAGATGGTGTTGA+TGG | + | chr8.1:74557159-74557178 | MS.gene94908:intron | 45.0% |
| !!! | GGAGATGGTGTTGATGGTTT+TGG | + | chr8.1:74557165-74557184 | MS.gene94908:CDS | 45.0% |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.1:74556086-74556105 | MS.gene94908:intron | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.1:74556083-74556102 | MS.gene94908:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.1:74556086-74556105 | None:intergenic | 50.0% | |
| TGGTTACATTGAGCGCGAAG+AGG | + | chr8.1:74557049-74557068 | MS.gene94908:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 74555384 | 74557600 | 74555384 | ID=MS.gene94908 |
| chr8.1 | mRNA | 74555384 | 74557600 | 74555384 | ID=MS.gene94908.t1;Parent=MS.gene94908 |
| chr8.1 | exon | 74555384 | 74555540 | 74555384 | ID=MS.gene94908.t1.exon1;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74555384 | 74555540 | 74555384 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74556091 | 74556173 | 74556091 | ID=MS.gene94908.t1.exon2;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74556091 | 74556173 | 74556091 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74556313 | 74556372 | 74556313 | ID=MS.gene94908.t1.exon3;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74556313 | 74556372 | 74556313 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74556763 | 74556871 | 74556763 | ID=MS.gene94908.t1.exon4;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74556763 | 74556871 | 74556763 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74557018 | 74557070 | 74557018 | ID=MS.gene94908.t1.exon5;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74557018 | 74557070 | 74557018 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74557160 | 74557240 | 74557160 | ID=MS.gene94908.t1.exon6;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74557160 | 74557240 | 74557160 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74557337 | 74557449 | 74557337 | ID=MS.gene94908.t1.exon7;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74557337 | 74557449 | 74557337 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| chr8.1 | exon | 74557537 | 74557600 | 74557537 | ID=MS.gene94908.t1.exon8;Parent=MS.gene94908.t1 |
| chr8.1 | CDS | 74557537 | 74557600 | 74557537 | ID=cds.MS.gene94908.t1;Parent=MS.gene94908.t1 |
| Gene Sequence |
| Protein sequence |
