Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95389.t1 | RHN67368.1 | 79.9 | 783 | 92 | 9 | 9 | 767 | 8 | 749 | 0.00E+00 | 1181.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95389.t1 | A0A396IRT2 | 79.9 | 783 | 92 | 9 | 9 | 767 | 8 | 749 | 0.0e+00 | 1181.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049501 | MS.gene95389 | 0.804832 | 1.79E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene95389 | 0.806659 | 7.39E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene95389 | 0.835422 | 1.69E-56 | -1.69E-46 |
| MS.gene050844 | MS.gene95389 | 0.801238 | 9.90E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene95389 | 0.806662 | 7.38E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene95389 | 0.836111 | 1.13E-56 | -1.69E-46 |
| MS.gene052020 | MS.gene95389 | 0.833783 | 4.37E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene95389 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene95389 | 0.803003 | 4.29E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene95389 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene052896 | MS.gene95389 | 0.805753 | 1.15E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene95389 | 0.807752 | 4.34E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene95389 | 0.808541 | 2.94E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene95389 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene95389 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene95389 | 0.809751 | 1.62E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene95389 | 0.817027 | 4.08E-52 | -1.69E-46 |
| MS.gene055608 | MS.gene95389 | 0.840217 | 9.93E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene95389 | 0.808049 | 3.75E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene95389 | 0.80095 | 1.13E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene95389 | 0.826497 | 2.63E-54 | -1.69E-46 |
| MS.gene058168 | MS.gene95389 | 0.839994 | 1.14E-57 | -1.69E-46 |
| MS.gene059124 | MS.gene95389 | 0.802978 | 4.34E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene95389 | 0.807507 | 4.89E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene95389 | 0.801031 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95389.t1 | MTR_3g051060 | 60.957 | 794 | 225 | 15 | 1 | 764 | 1 | 739 | 0.0 | 922 |
| MS.gene95389.t1 | MTR_3g058570 | 85.246 | 427 | 18 | 3 | 351 | 767 | 1 | 392 | 0.0 | 724 |
| MS.gene95389.t1 | MTR_5g085340 | 49.144 | 759 | 347 | 11 | 21 | 767 | 21 | 752 | 0.0 | 676 |
| MS.gene95389.t1 | MTR_5g085350 | 46.920 | 763 | 350 | 13 | 21 | 767 | 21 | 744 | 0.0 | 630 |
| MS.gene95389.t1 | MTR_5g085350 | 47.244 | 762 | 336 | 14 | 21 | 767 | 21 | 731 | 0.0 | 629 |
| MS.gene95389.t1 | MTR_5g085360 | 39.770 | 782 | 367 | 14 | 21 | 762 | 21 | 738 | 2.30e-173 | 516 |
| MS.gene95389.t1 | MTR_3g050500 | 41.230 | 764 | 367 | 23 | 19 | 758 | 23 | 728 | 1.29e-159 | 481 |
| MS.gene95389.t1 | MTR_2g020510 | 34.742 | 757 | 412 | 15 | 18 | 763 | 4 | 689 | 1.32e-136 | 420 |
| MS.gene95389.t1 | MTR_2g020470 | 34.034 | 761 | 392 | 16 | 19 | 763 | 5 | 671 | 1.38e-120 | 377 |
| MS.gene95389.t1 | MTR_2g020450 | 34.967 | 755 | 413 | 14 | 19 | 763 | 5 | 691 | 9.12e-120 | 376 |
| MS.gene95389.t1 | MTR_3g058550 | 85.938 | 192 | 21 | 3 | 48 | 233 | 1 | 192 | 8.81e-109 | 331 |
| MS.gene95389.t1 | MTR_3g055310 | 31.831 | 355 | 224 | 8 | 392 | 744 | 61 | 399 | 1.75e-46 | 171 |
| MS.gene95389.t1 | MTR_3g055310 | 32.153 | 339 | 212 | 8 | 408 | 744 | 14 | 336 | 3.82e-46 | 169 |
| MS.gene95389.t1 | MTR_3g055310 | 31.638 | 354 | 226 | 6 | 392 | 744 | 113 | 451 | 5.05e-46 | 171 |
| MS.gene95389.t1 | MTR_3g055310 | 31.638 | 354 | 226 | 6 | 392 | 744 | 141 | 479 | 8.08e-46 | 171 |
| MS.gene95389.t1 | MTR_3g055310 | 31.638 | 354 | 226 | 6 | 392 | 744 | 139 | 477 | 8.75e-46 | 171 |
| MS.gene95389.t1 | MTR_3g055310 | 31.638 | 354 | 226 | 6 | 392 | 744 | 166 | 504 | 1.19e-45 | 171 |
| MS.gene95389.t1 | MTR_2g438740 | 33.657 | 309 | 195 | 3 | 447 | 752 | 264 | 565 | 3.03e-45 | 171 |
| MS.gene95389.t1 | MTR_5g091220 | 34.915 | 295 | 184 | 3 | 459 | 752 | 313 | 600 | 3.47e-45 | 172 |
| MS.gene95389.t1 | MTR_5g091220 | 26.066 | 211 | 142 | 4 | 28 | 235 | 39 | 238 | 4.01e-11 | 67.0 |
| MS.gene95389.t1 | MTR_3g051020 | 50.307 | 163 | 70 | 3 | 23 | 182 | 26 | 180 | 4.71e-45 | 160 |
| MS.gene95389.t1 | MTR_2g017930 | 37.299 | 311 | 177 | 5 | 457 | 759 | 357 | 657 | 2.78e-43 | 167 |
| MS.gene95389.t1 | MTR_2g017930 | 29.630 | 216 | 132 | 7 | 32 | 235 | 13 | 220 | 3.08e-15 | 80.1 |
| MS.gene95389.t1 | MTR_5g028190 | 32.459 | 305 | 185 | 4 | 459 | 754 | 240 | 532 | 4.04e-42 | 161 |
| MS.gene95389.t1 | MTR_5g028190 | 29.648 | 199 | 116 | 7 | 50 | 234 | 11 | 199 | 9.43e-12 | 68.6 |
| MS.gene95389.t1 | MTR_2g438400 | 33.333 | 297 | 187 | 4 | 459 | 752 | 255 | 543 | 2.23e-41 | 160 |
| MS.gene95389.t1 | MTR_5g028130 | 31.457 | 302 | 194 | 5 | 459 | 754 | 42 | 336 | 2.03e-39 | 149 |
| MS.gene95389.t1 | MTR_2g438720 | 32.039 | 309 | 200 | 5 | 447 | 752 | 389 | 690 | 2.04e-39 | 156 |
| MS.gene95389.t1 | MTR_2g438700 | 31.613 | 310 | 202 | 5 | 447 | 753 | 387 | 689 | 6.96e-39 | 154 |
| MS.gene95389.t1 | MTR_2g438440 | 33.333 | 297 | 187 | 4 | 459 | 752 | 396 | 684 | 1.90e-38 | 153 |
| MS.gene95389.t1 | MTR_3g455790 | 33.333 | 282 | 179 | 4 | 459 | 739 | 308 | 581 | 6.34e-38 | 150 |
| MS.gene95389.t1 | MTR_5g028450 | 35.099 | 302 | 179 | 7 | 459 | 752 | 1 | 293 | 2.81e-37 | 142 |
| MS.gene95389.t1 | MTR_2g438640 | 32.484 | 314 | 199 | 7 | 443 | 752 | 385 | 689 | 5.11e-36 | 145 |
| MS.gene95389.t1 | MTR_2g438760 | 29.393 | 313 | 205 | 7 | 447 | 752 | 257 | 560 | 4.51e-33 | 135 |
| MS.gene95389.t1 | MTR_2g438760 | 29.787 | 188 | 118 | 3 | 28 | 215 | 56 | 229 | 2.39e-11 | 67.4 |
| MS.gene95389.t1 | MTR_3g452020 | 27.864 | 323 | 221 | 5 | 414 | 735 | 92 | 403 | 4.61e-33 | 133 |
| MS.gene95389.t1 | MTR_2g438640 | 31.847 | 314 | 175 | 7 | 443 | 752 | 385 | 663 | 1.27e-32 | 135 |
| MS.gene95389.t1 | MTR_3g452020 | 27.954 | 347 | 236 | 6 | 414 | 757 | 268 | 603 | 2.07e-32 | 134 |
| MS.gene95389.t1 | MTR_6g017215 | 34.595 | 185 | 120 | 1 | 564 | 748 | 6 | 189 | 3.63e-30 | 119 |
| MS.gene95389.t1 | MTR_5g028930 | 30.657 | 274 | 162 | 5 | 459 | 720 | 321 | 578 | 8.09e-29 | 122 |
| MS.gene95389.t1 | MTR_2g438640 | 35.079 | 191 | 114 | 5 | 567 | 757 | 403 | 583 | 4.49e-24 | 108 |
| MS.gene95389.t1 | MTR_5g028110 | 31.973 | 147 | 99 | 1 | 608 | 754 | 28 | 173 | 1.41e-20 | 90.1 |
| MS.gene95389.t1 | MTR_5g028690 | 33.974 | 156 | 99 | 2 | 558 | 711 | 35 | 188 | 4.56e-20 | 90.5 |
| MS.gene95389.t1 | MTR_5g028900 | 36.620 | 142 | 78 | 3 | 579 | 720 | 17 | 146 | 1.07e-18 | 84.3 |
| MS.gene95389.t1 | MTR_5g028840 | 33.784 | 148 | 98 | 0 | 564 | 711 | 2 | 149 | 6.43e-17 | 80.5 |
| MS.gene95389.t1 | MTR_2g438470 | 35.338 | 133 | 80 | 5 | 512 | 640 | 367 | 497 | 2.84e-14 | 76.6 |
| MS.gene95389.t1 | MTR_1g113760 | 26.087 | 299 | 201 | 8 | 462 | 750 | 243 | 531 | 2.01e-13 | 73.9 |
| MS.gene95389.t1 | MTR_2g017800 | 28.837 | 215 | 129 | 7 | 32 | 231 | 13 | 218 | 1.10e-12 | 69.3 |
| MS.gene95389.t1 | MTR_2g438580 | 39.241 | 79 | 47 | 1 | 579 | 657 | 3 | 80 | 1.60e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95389.t1 | AT5G35810 | 33.550 | 307 | 186 | 5 | 457 | 752 | 31 | 330 | 2.81e-44 | 163 |
| MS.gene95389.t1 | AT3G18670 | 33.013 | 312 | 197 | 5 | 459 | 767 | 293 | 595 | 4.12e-43 | 166 |
| MS.gene95389.t1 | AT3G18670 | 33.013 | 312 | 197 | 5 | 459 | 767 | 348 | 650 | 4.79e-43 | 166 |
| MS.gene95389.t1 | AT3G18670 | 25.962 | 208 | 146 | 3 | 30 | 234 | 60 | 262 | 9.12e-13 | 72.4 |
| MS.gene95389.t1 | AT5G04730 | 32.047 | 337 | 210 | 7 | 426 | 756 | 268 | 591 | 1.43e-41 | 161 |
| MS.gene95389.t1 | AT5G04700 | 33.439 | 314 | 196 | 6 | 447 | 756 | 354 | 658 | 3.49e-37 | 149 |
| MS.gene95389.t1 | AT3G54065 | 36.667 | 210 | 127 | 1 | 550 | 753 | 8 | 217 | 2.28e-36 | 137 |
| MS.gene95389.t1 | AT5G04690 | 36.441 | 236 | 135 | 4 | 529 | 756 | 386 | 614 | 2.84e-36 | 145 |
| MS.gene95389.t1 | AT5G04690 | 36.441 | 236 | 135 | 4 | 529 | 756 | 406 | 634 | 3.08e-36 | 145 |
| MS.gene95389.t1 | AT5G04690 | 36.441 | 236 | 135 | 4 | 529 | 756 | 420 | 648 | 3.55e-36 | 145 |
| MS.gene95389.t1 | AT5G04680 | 31.889 | 323 | 197 | 8 | 447 | 756 | 327 | 639 | 9.03e-30 | 126 |
| MS.gene95389.t1 | AT5G04680 | 31.975 | 319 | 194 | 8 | 447 | 752 | 218 | 526 | 1.22e-29 | 124 |
| MS.gene95389.t1 | AT5G04680 | 31.889 | 323 | 197 | 8 | 447 | 756 | 341 | 653 | 1.37e-29 | 125 |
| MS.gene95389.t1 | AT5G04680 | 31.889 | 323 | 197 | 8 | 447 | 756 | 370 | 682 | 1.38e-29 | 125 |
Find 136 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGAACGTGAAGCAATTT+TGG | 0.139641 | 3.3:+47755200 | MS.gene95389:CDS |
| TGAACGTAAGAAAGCAATTT+TGG | 0.149249 | 3.3:+47755308 | MS.gene95389:CDS |
| ATCTATACCCTTGGCCTTTC+AGG | 0.155662 | 3.3:+47754109 | MS.gene95389:CDS |
| TTTGCTTTGTCTTCAGTAAT+TGG | 0.161186 | 3.3:+47757526 | MS.gene95389:CDS |
| CGATTGCTTCATCAACGTTT+AGG | 0.226838 | 3.3:-47753291 | None:intergenic |
| CATATCAATTCTGAAATCTT+TGG | 0.253328 | 3.3:-47757611 | None:intergenic |
| TTTCTTGCTGCAGTCAAAAT+TGG | 0.254979 | 3.3:-47755342 | None:intergenic |
| TTCCAAGTTAAGGTCGTATA+TGG | 0.261111 | 3.3:-47755412 | None:intergenic |
| ATTGACATTGATAACGATAA+TGG | 0.262658 | 3.3:+47749912 | MS.gene95389:CDS |
| GATATACATTAGAAGGAAAA+TGG | 0.281927 | 3.3:+47749619 | MS.gene95389:CDS |
| TCTCCCTTATCACTTGTCTT+TGG | 0.283759 | 3.3:-47757847 | None:intergenic |
| ATGAATCAGATACCTTGATT+TGG | 0.286475 | 3.3:-47754516 | None:intergenic |
| GTGGCATATCAAATGGTTTC+AGG | 0.294033 | 3.3:+47755641 | MS.gene95389:CDS |
| AGCGACGAACATTGCAATAA+TGG | 0.298105 | 3.3:-47757674 | None:intergenic |
| TATGCCAAGGAAACTTCTTT+TGG | 0.300612 | 3.3:+47757630 | MS.gene95389:CDS |
| CCAATGTCGTTGAGGCATTA+AGG | 0.302274 | 3.3:+47755475 | MS.gene95389:CDS |
| AAAACTATGCCACATGTCTT+TGG | 0.311259 | 3.3:+47754068 | MS.gene95389:CDS |
| GATTGCTTCATCAACGTTTA+GGG | 0.311454 | 3.3:-47753290 | None:intergenic |
| CTTGAATGTAAGAATGAAAA+AGG | 0.315632 | 3.3:+47749801 | MS.gene95389:CDS |
| TAACATGTGTCGCAGTTCTT+TGG | 0.322238 | 3.3:-47753358 | None:intergenic |
| TGAATCAGATACCTTGATTT+GGG | 0.338507 | 3.3:-47754515 | None:intergenic |
| GTTCCAATCTCGATCACTTT+TGG | 0.346166 | 3.3:-47755592 | None:intergenic |
| GTTCCACTCACATCTCCTAT+TGG | 0.350959 | 3.3:-47754471 | None:intergenic |
| TCAACTCTTGGACATATTTA+CGG | 0.374464 | 3.3:+47754410 | MS.gene95389:CDS |
| GTAGTAGCAGCACTCCTTGC+CGG | 0.383621 | 3.3:+47757412 | MS.gene95389:CDS |
| ACTCACATCTCCTATTGGTT+TGG | 0.384377 | 3.3:-47754466 | None:intergenic |
| CTAAGGGGATATACATTAGA+AGG | 0.388545 | 3.3:+47749612 | MS.gene95389:CDS |
| TGTTCCTTGCTGCATTGTCT+TGG | 0.403833 | 3.3:+47749946 | MS.gene95389:CDS |
| ATCACTTGTCTTTGGCACTT+TGG | 0.403980 | 3.3:-47757839 | None:intergenic |
| TACTTGTAGCAGTTGAGAAC+AGG | 0.405145 | 3.3:+47755448 | MS.gene95389:CDS |
| AAAGCGGATACAAGATGATA+TGG | 0.412635 | 3.3:+47751358 | MS.gene95389:CDS |
| TCTCTTCCTTATCCACCCCT+TGG | 0.414114 | 3.3:-47755545 | None:intergenic |
| GATCGAGATTGGAACATATC+TGG | 0.414209 | 3.3:+47755600 | MS.gene95389:CDS |
| TTTGGTCAATAAGAAAGAAA+TGG | 0.416646 | 3.3:-47757708 | None:intergenic |
| AGATGAAGCAAAAGCACAAA+TGG | 0.424240 | 3.3:+47754382 | MS.gene95389:CDS |
| ACCCTTGGCCTTTCAGGAGT+TGG | 0.424978 | 3.3:+47754115 | MS.gene95389:CDS |
| CAAGAAATCACATGAAGAAC+TGG | 0.428386 | 3.3:+47757342 | MS.gene95389:CDS |
| AATCCCAAAAGAAGTTTCCT+TGG | 0.428987 | 3.3:-47757634 | None:intergenic |
| ATAAGGGAGAGGAAATATAA+AGG | 0.435309 | 3.3:+47757860 | MS.gene95389:CDS |
| CTCTCAAACTTCTTGCTACT+AGG | 0.447146 | 3.3:+47751322 | MS.gene95389:CDS |
| CAAATGGAGTGGTCAACTCT+TGG | 0.447992 | 3.3:+47754398 | MS.gene95389:CDS |
| GAATCCTTATGAATCGTACT+TGG | 0.450022 | 3.3:+47754434 | MS.gene95389:CDS |
| TTCCATATACGACCTTAACT+TGG | 0.451334 | 3.3:+47755410 | MS.gene95389:CDS |
| CTACCAAAAGTGATCGAGAT+TGG | 0.451436 | 3.3:+47755589 | MS.gene95389:CDS |
| AGGAAAATGGAAAGAAGTAA+AGG | 0.452076 | 3.3:+47749632 | MS.gene95389:CDS |
| GCAGGCCTTCCTTCCAATGC+TGG | 0.454814 | 3.3:-47757493 | None:intergenic |
| TGCTTAGCAAAACTTATAAG+TGG | 0.456546 | 3.3:-47753415 | None:intergenic |
| TCTAATCCAAGGGGTGGATA+AGG | 0.457971 | 3.3:+47755539 | MS.gene95389:CDS |
| GGCGGCAACAGAAGTGAAAC+AGG | 0.460466 | 3.3:+47757466 | MS.gene95389:CDS |
| ATCGTCATTCAAAACAAACT+TGG | 0.462988 | 3.3:+47751291 | MS.gene95389:CDS |
| GTTTCACTTCTGTTGCCGCC+TGG | 0.465087 | 3.3:-47757463 | None:intergenic |
| GGAACCGGCGCCAAACCAAT+AGG | 0.470825 | 3.3:+47754456 | MS.gene95389:CDS |
| AATGTATGTGAATGTATCAT+AGG | 0.470965 | 3.3:+47749864 | MS.gene95389:CDS |
| GTGCCAAAGACAAGTGATAA+GGG | 0.472302 | 3.3:+47757844 | MS.gene95389:CDS |
| GTTCCCAAGTACGATTCATA+AGG | 0.472959 | 3.3:-47754438 | None:intergenic |
| ATCTCCTATTGGTTTGGCGC+CGG | 0.473567 | 3.3:-47754460 | None:intergenic |
| GTTCTAACTGTGAAATGCTC+TGG | 0.475307 | 3.3:-47757286 | None:intergenic |
| AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3.3:+47755362 | MS.gene95389:CDS |
| TATGAATCGTACTTGGGAAC+CGG | 0.485394 | 3.3:+47754441 | MS.gene95389:CDS |
| TTTGTATACATCTATACCCT+TGG | 0.487312 | 3.3:+47754100 | MS.gene95389:CDS |
| GTATTCTTCATTGTGCCATC+CGG | 0.491354 | 3.3:+47750057 | MS.gene95389:CDS |
| AGTGCCAAAGACAAGTGATA+AGG | 0.491616 | 3.3:+47757843 | MS.gene95389:CDS |
| TTCTTCCAGAGGACAAGCTA+AGG | 0.493101 | 3.3:+47749595 | MS.gene95389:intron |
| CATGAAGAACTGGTAACAAA+AGG | 0.493971 | 3.3:+47757352 | MS.gene95389:CDS |
| TGAAACAGGTGAACCAGCAT+TGG | 0.494721 | 3.3:+47757480 | MS.gene95389:CDS |
| TTCTTTGGACATGATTCTTG+TGG | 0.498729 | 3.3:-47753343 | None:intergenic |
| GGAAGTTGTTAAAAGTCTTG+TGG | 0.501379 | 3.3:+47749746 | MS.gene95389:CDS |
| CACATGGATCAGTATACTAA+AGG | 0.504814 | 3.3:+47757256 | MS.gene95389:intron |
| ACTACTTCTAATGCTGCAAA+TGG | 0.506668 | 3.3:+47753457 | MS.gene95389:CDS |
| TTCGAGAAGTGAGTATGGAC+AGG | 0.510529 | 3.3:-47757582 | None:intergenic |
| TGAATCCTCTTGATGCTGCA+AGG | 0.512864 | 3.3:-47749839 | None:intergenic |
| CTAAGAAGATCAATGTAAAG+TGG | 0.514162 | 3.3:-47757805 | None:intergenic |
| CTTGATGCTGCAAGGTGCAA+AGG | 0.522226 | 3.3:-47749831 | None:intergenic |
| AACAAAGATGACAAAACAGC+TGG | 0.522635 | 3.3:+47757310 | MS.gene95389:CDS |
| CCTTAATGCCTCAACGACAT+TGG | 0.524122 | 3.3:-47755475 | None:intergenic |
| GTGAACCAGCATTGGAAGGA+AGG | 0.530748 | 3.3:+47757488 | MS.gene95389:CDS |
| AGACAATGCAGCAAGGAACA+AGG | 0.532044 | 3.3:-47749943 | None:intergenic |
| GGAAGAAGCTTGCGTTCAGA+TGG | 0.532689 | 3.3:-47754043 | None:intergenic |
| TGGTAACAAAAGGTAGTGAA+TGG | 0.535089 | 3.3:+47757362 | MS.gene95389:CDS |
| TCTTCCAGAGGACAAGCTAA+GGG | 0.541537 | 3.3:+47749596 | MS.gene95389:intron |
| TCTGCTTACAACCCAAATCA+AGG | 0.541631 | 3.3:+47754504 | MS.gene95389:CDS |
| ATGAAGCAATCGAATATTGT+CGG | 0.541968 | 3.3:+47753302 | MS.gene95389:CDS |
| GCTATTGCATACAAAGTCAC+AGG | 0.544603 | 3.3:-47757775 | None:intergenic |
| AAATGATGTGGCATATCAAA+TGG | 0.546302 | 3.3:+47755634 | MS.gene95389:CDS |
| TCCGAGTTAAAACGTAGTTA+TGG | 0.552819 | 3.3:+47749993 | MS.gene95389:CDS |
| TTAAGGTCGTATATGGAACT+TGG | 0.559940 | 3.3:-47755405 | None:intergenic |
| ATATTTGATGATCTAATCCA+AGG | 0.560273 | 3.3:+47755528 | MS.gene95389:CDS |
| ATTTCAGAATTGATATGCCA+AGG | 0.560690 | 3.3:+47757617 | MS.gene95389:CDS |
| TCATAGGAAAAGATGGTGAA+AGG | 0.561859 | 3.3:+47749880 | MS.gene95389:CDS |
| TACCAACTCCTGAAAGGCCA+AGG | 0.563628 | 3.3:-47754117 | None:intergenic |
| TTGCACCTTGCAGCATCAAG+AGG | 0.564363 | 3.3:+47749834 | MS.gene95389:CDS |
| AATATGGGAGAGAAAGACAA+AGG | 0.570534 | 3.3:+47754016 | MS.gene95389:CDS |
| TATTTGATGATCTAATCCAA+GGG | 0.570566 | 3.3:+47755529 | MS.gene95389:CDS |
| AATCTTAAGTCACAATAATG+AGG | 0.571757 | 3.3:+47749773 | MS.gene95389:CDS |
| GATATGCCACATCATTTGCA+AGG | 0.574090 | 3.3:-47755628 | None:intergenic |
| AGCAAGTGACTGAATAAATG+AGG | 0.575232 | 3.3:-47757750 | None:intergenic |
| GCTACATCAAGCACTGTACC+AGG | 0.575420 | 3.3:+47757445 | MS.gene95389:CDS |
| GACAATGCAGCAAGGAACAA+GGG | 0.577791 | 3.3:-47749942 | None:intergenic |
| AAAGCAAATGCATCAAATGC+AGG | 0.578955 | 3.3:-47757511 | None:intergenic |
| ATATGGGAGAGAAAGACAAA+GGG | 0.588722 | 3.3:+47754017 | MS.gene95389:CDS |
| GTGCTGCCTTGCAAATGATG+TGG | 0.592481 | 3.3:+47755622 | MS.gene95389:CDS |
| GACACTTACCAACTCCTGAA+AGG | 0.593684 | 3.3:-47754123 | None:intergenic |
| GAATGTATCATAGGAAAAGA+TGG | 0.595958 | 3.3:+47749873 | MS.gene95389:CDS |
| ACAGGTGAACCAGCATTGGA+AGG | 0.599054 | 3.3:+47757484 | MS.gene95389:CDS |
| TACAGTGCTTGATGTAGCGA+AGG | 0.603317 | 3.3:-47757440 | None:intergenic |
| AAAGACAAGTGATAAGGGAG+AGG | 0.605214 | 3.3:+47757849 | MS.gene95389:CDS |
| CTAGTAGCAAGAAGTTTGAG+AGG | 0.605951 | 3.3:-47751321 | None:intergenic |
| CACATCTCTAGTGTTCGTCA+TGG | 0.610473 | 3.3:-47748342 | None:intergenic |
| ATCAACGTTTAGGGTTCCCG+CGG | 0.617221 | 3.3:-47753281 | None:intergenic |
| AATCCTTATGAATCGTACTT+GGG | 0.617402 | 3.3:+47754435 | MS.gene95389:CDS |
| CTTCCAGAGGACAAGCTAAG+GGG | 0.618628 | 3.3:+47749597 | MS.gene95389:intron |
| TAATGACAGCACACACATGA+CGG | 0.624276 | 3.3:+47748376 | MS.gene95389:CDS |
| CATGACGAACACTAGAGATG+TGG | 0.628983 | 3.3:+47748343 | None:intergenic |
| GAGTTAAAACGTAGTTATGG+TGG | 0.629250 | 3.3:+47749996 | MS.gene95389:CDS |
| GCGGATACAAGATGATATGG+TGG | 0.635479 | 3.3:+47751361 | MS.gene95389:CDS |
| GACAGCACACACATGACGGA+AGG | 0.637337 | 3.3:+47748380 | MS.gene95389:CDS |
| CAGGAGAACCAATGTCGTTG+AGG | 0.637648 | 3.3:+47755467 | MS.gene95389:CDS |
| TGATGATCTAATCCAAGGGG+TGG | 0.637981 | 3.3:+47755533 | MS.gene95389:CDS |
| TGATGTAGCGAAGGAAACAC+CGG | 0.642955 | 3.3:-47757431 | None:intergenic |
| TCAACGTTTAGGGTTCCCGC+GGG | 0.646060 | 3.3:-47753280 | None:intergenic |
| AAGCAAAAGCACAAATGGAG+TGG | 0.647330 | 3.3:+47754387 | MS.gene95389:CDS |
| CTTAAGTCACAATAATGAGG+AGG | 0.647920 | 3.3:+47749776 | MS.gene95389:CDS |
| CAGAGGAACAGCACTACACG+TGG | 0.648901 | 3.3:+47749704 | MS.gene95389:CDS |
| AGGCCCTCAGCCTTCAAAAG+CGG | 0.649354 | 3.3:+47751342 | MS.gene95389:CDS |
| TAGCGAAGGAAACACCGGCA+AGG | 0.651641 | 3.3:-47757426 | None:intergenic |
| TTTGCCAAGACAATGCAGCA+AGG | 0.653900 | 3.3:-47749950 | None:intergenic |
| ACCAACTCCTGAAAGGCCAA+GGG | 0.656443 | 3.3:-47754116 | None:intergenic |
| CTATTGCATACAAAGTCACA+GGG | 0.657703 | 3.3:-47757774 | None:intergenic |
| GGCAGTAAATGATGACAATG+AGG | 0.662846 | 3.3:+47749725 | MS.gene95389:CDS |
| ATAGACATCAACAAAAGCAG+AGG | 0.666126 | 3.3:+47749687 | MS.gene95389:CDS |
| ATATCAAAAGGTATACCCGC+GGG | 0.679088 | 3.3:+47753265 | MS.gene95389:intron |
| CATATCAAAAGGTATACCCG+CGG | 0.688608 | 3.3:+47753264 | MS.gene95389:intron |
| TGCAGGAGATAACAACAATG+AGG | 0.695234 | 3.3:+47755158 | MS.gene95389:intron |
| AAACCAATAGGAGATGTGAG+TGG | 0.706368 | 3.3:+47754468 | MS.gene95389:CDS |
| ATTTGATGATCTAATCCAAG+GGG | 0.710471 | 3.3:+47755530 | MS.gene95389:CDS |
| ACATCAAGCACTGTACCAGG+CGG | 0.758516 | 3.3:+47757448 | MS.gene95389:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 47748344 | 47757879 | 47748344 | ID=MS.gene95389 |
| chr3.3 | mRNA | 47748344 | 47757879 | 47748344 | ID=MS.gene95389.t1;Parent=MS.gene95389 |
| chr3.3 | exon | 47748344 | 47748401 | 47748344 | ID=MS.gene95389.t1.exon1;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47748344 | 47748401 | 47748344 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47749604 | 47750092 | 47749604 | ID=MS.gene95389.t1.exon2;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47749604 | 47750092 | 47749604 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47751253 | 47751402 | 47751253 | ID=MS.gene95389.t1.exon3;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47751253 | 47751402 | 47751253 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47753275 | 47753478 | 47753275 | ID=MS.gene95389.t1.exon4;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47753275 | 47753478 | 47753275 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47754008 | 47754136 | 47754008 | ID=MS.gene95389.t1.exon5;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47754008 | 47754136 | 47754008 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47754364 | 47754525 | 47754364 | ID=MS.gene95389.t1.exon6;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47754364 | 47754525 | 47754364 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47755163 | 47755662 | 47755163 | ID=MS.gene95389.t1.exon7;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47755163 | 47755662 | 47755163 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| chr3.3 | exon | 47757268 | 47757879 | 47757268 | ID=MS.gene95389.t1.exon8;Parent=MS.gene95389.t1 |
| chr3.3 | CDS | 47757268 | 47757879 | 47757268 | ID=cds.MS.gene95389.t1;Parent=MS.gene95389.t1 |
| Gene Sequence |
| Protein sequence |
