AlfalfaGEDB | MS.gene96693

M. sativa cultivar XinJiangDaYe / MS.gene96693

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96693.t1	XP_024626745.1	84.1	277	37	2	1	277	1	270	7.30E-98	367.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96693.t1	I3SPL3	80.1	277	39	3	1	277	1	261	3.4e-89	337.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049178	MS.gene96693	0.803027	4.24E-49	-1.69E-46
MS.gene049824	MS.gene96693	0.821785	3.36E-53	-1.69E-46
MS.gene049825	MS.gene96693	0.830113	3.52E-55	-1.69E-46
MS.gene051700	MS.gene96693	0.848492	5.92E-60	-1.69E-46
MS.gene051705	MS.gene96693	0.806667	7.36E-50	-1.69E-46
MS.gene053294	MS.gene96693	0.81906	1.42E-52	-1.69E-46
MS.gene053298	MS.gene96693	0.803452	3.46E-49	-1.69E-46
MS.gene05365	MS.gene96693	0.822086	2.86E-53	-1.69E-46
MS.gene054576	MS.gene96693	0.801485	8.80E-49	-1.69E-46
MS.gene055603	MS.gene96693	0.820569	6.40E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96693.t1	MTR_1g106210	93.502	277	2	3	1	277	1	261	0.0	499
MS.gene96693.t1	MTR_5g005040	39.333	150	63	5	125	272	109	232	3.70e-18	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96693.t1	AT3G19650	32.051	312	152	9	7	277	10	302	5.23e-17	79.7

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Find 66 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTATATGCTCAAAGTA+AGG	0.495225	1.1:+76430100	MS.gene96693:CDS
AAAGTAAGGAGAATAACCAA+AGG	0.679155	1.1:+76430114	MS.gene96693:CDS
AAATCACTGGCTAAACTGGA+TGG	0.588753	1.1:+76430173	MS.gene96693:CDS
AAGATCTCGCTCTTATTATC+AGG	0.426217	1.1:+76428356	MS.gene96693:CDS
AAGCGAGAACCTAGGAAGGA+TGG	0.574352	1.1:+76430449	MS.gene96693:CDS
AATAACCAAAGGTTGGAGAC+AGG	0.542889	1.1:+76430125	MS.gene96693:CDS
AATCCAACAAGCGAGAACCT+AGG	0.638185	1.1:+76430441	MS.gene96693:CDS
ACCCTCCAGAAAGGAATGAA+AGG	0.576042	1.1:+76430351	MS.gene96693:CDS
ACCTGAGAAGCGAATTGCAG+AGG	0.607322	1.1:+76430412	MS.gene96693:CDS
ACTGGTCAAAGGGAAGCTGA+TGG	0.653810	1.1:+76429961	MS.gene96693:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAGGAGAATAACCAA+AGG	+	chr1.1:76430114-76430133	MS.gene96693:CDS	30.0%
AATCTCAACATTTATGGTGA+AGG	-	chr1.1:76429634-76429653	None:intergenic	30.0%
AATGGACATTGAAGATAACT+TGG	+	chr1.1:76429745-76429764	MS.gene96693:intron	30.0%
ACATCCATTTATGCAATGTT+TGG	+	chr1.1:76428885-76428904	MS.gene96693:intron	30.0%
AGAGGAAGAGACAAATTTAA+TGG	+	chr1.1:76430521-76430540	MS.gene96693:CDS	30.0%
AGATTCTATTCCAAAGAATG+AGG	+	chr1.1:76430616-76430635	MS.gene96693:CDS	30.0%
ATGTCCAAACATTGCATAAA+TGG	-	chr1.1:76428892-76428911	None:intergenic	30.0%
CCAAACCAAACTTAAAATGT+TGG	+	chr1.1:76428644-76428663	MS.gene96693:intron	30.0%
CCATCTCTTCTATATTTCTT+AGG	-	chr1.1:76428252-76428271	None:intergenic	30.0%
CCTAAGAAATATAGAAGAGA+TGG	+	chr1.1:76428249-76428268	MS.gene96693:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	76428086	76430679	76428086	ID=MS.gene96693
chr1.1	mRNA	76428086	76430679	76428086	ID=MS.gene96693.t1;Parent=MS.gene96693
chr1.1	exon	76428086	76428147	76428086	ID=MS.gene96693.t1.exon1;Parent=MS.gene96693.t1
chr1.1	CDS	76428086	76428147	76428086	ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1
chr1.1	exon	76428248	76428377	76428248	ID=MS.gene96693.t1.exon2;Parent=MS.gene96693.t1
chr1.1	CDS	76428248	76428377	76428248	ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1
chr1.1	exon	76429922	76429982	76429922	ID=MS.gene96693.t1.exon3;Parent=MS.gene96693.t1
chr1.1	CDS	76429922	76429982	76429922	ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1
chr1.1	exon	76430099	76430679	76430099	ID=MS.gene96693.t1.exon4;Parent=MS.gene96693.t1
chr1.1	CDS	76430099	76430679	76430099	ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1

Gene Sequence

>MS.gene96693

ATGTCTCATCGAGATTCCTCCGATTCGAAGCGTCGTCATTCTAAGCTCGATCGTGAACCAAGGTACACTTCTTCTTCTTCTTCTTCTTCTTCTAGTTCAATTGAATTAGATGATTATTTCGTTCTTTTGTTTGAATGTTGATTATCGTGATGTTTGTTTTAGCCCTAAGAAATATAGAAGAGATGGAAAACAAGATAGAGAAAGAGAAAGAGAAAGATTAACCACAAATGATCATTCTGAACCACCGTCCAAACATTCATCTCAACCTCCAAGATCTCGCTCTTATTATCAGGTCATCTTTATTTTACTCTTGATTGCTTCAGCTTAATGTGCTTCTTTATATTTGGACCAACTTCTGTTCCTAACTACATTCAAATTTGCATACACCTGAAACTTGATGGAAGGCATGTATGGTGTTTGGCATTGAGATATTTGATTGCATTCAATTAATTCATTTTTTCAAGTTTTTACAGCTGTAGATGTGTCCGGTGTCCATGTTTGTGTCAGTGCTTCGTAGGTGTTGTTTATCCTCTGGTATTAAGCTCTTAGGAAAGTGCACCAAACCAAACTTAAAATGTTGGAAAACAATGTTGTCAATAGCATATTATAGCGGAGCGACCCCTGACTGCAACGCGACATGCAATAGTAGAGCAACCTATTGTAGCGGCCAGCCAAAATAGTGGCTGCCGCAGATGCTATTGTGCCTCACCTCAGAATGAGATAAAAAAATTCCGTAAAATCATTTTATTTAAATGTTAGGGCTTTTCAGTTAATTTCAGATCTCACTCCATTTAGTGAGACATCCATTTATGCAATGTTTGGACATGTGGTAGACTTGCTTTTCTCACCTTTCAAAGCCATTTGGCCGTGGTTTTAAAGAAGCTACATATTGTAGCATTAAACGAATGTGCGTTGCCGTTTGTTTATTCCACCGATAAAACAAACACACACTTAGCTGCCATTTCACTATGTGGGGTTGATAACATTGTTGGAAAAGGAAAAAAAATATCTTTAGTCTCCTTTGTTTAAAAATAAATGATTTCTCTATTCACAAAGAGGAGAGTTGCATGTGCATTAGCATTAGCATTGCACAAAAACATAACTCAATCATTATTAAACCTTTAGCTCTAAATCAAGTAGTTAACTTGGGTTCACAGTTATTGTTTTGTATATCCCTGCATACAATTGGTCAGCTTGTAGCTACCTACAAGCTGGTAAACAATAAATACGTTGGGAGGAAACTGGGAGAAGAACATTGTACACCATTCGTTACTGTTTGCTTTGGCTGTTAACTGCCTGGTACAAGTTGTGAGCAATTTTATAACCTTAATCATAATGCAAATCCTACACCATTTCCATTTTCTCGATGTTAGCTACTACAACATGTGGTGGGTGGAAAGTTACTTATTCGAGATTACCAGGATTGCCGTATATATTGTTGTATTGGGTGAAATACAAACCATAAATGTTAATAAAAGACAACTGGAATTTGCTTTGACGGTAAAATATTGTATGAATAATCTATACAGATGACAAAGCTCAAATCCTTCACCATAAATGTTGAGATTGGTTTTTATTCCTTTGCCCCTTGATTTATAAGGAGGTCAGTGTTTATCGTCAAATACCTTTATATAAACAGTATTGGAAAGAAAACATCTTAATGGACATTGAAGATAACTTGGAAATTCATTTTTTAATTACAGATATAAAATCCCTTTTTATATGCTATAGATGTTAATCAGTGTATGCAAACTATTTTTCTGGGGCGTGGGATTCTTATTCAGCCCCATGCCTTCAAGTGCCTCGGTATATGCTTTCCAATGCATGTTTTAACAGCATCATGAATGGGGCAATACTGTGCAGGTTGGTCGAAGCACTGGTCAAAGGGAAGCTGATGGTGAGTTTCCTTAATTTTATATTGATATATATTATTTTCTTTTCGCTTTATTGTATATGGATGGTTTGGAGATTTACTCGATATACTGAAGCCCAAAATTCTTCGATTCCAAACAGAAAAGGTATATGCTCAAAGTAAGGAGAATAACCAAAGGTTGGAGACAGGTCAAAGTAGAGAGCAAAGAGATGAGAAATCACTGGCTAAACTGGATGGTAATTTTCAGAGAAGAGACAGTTTTCGAGAAAGGAAAGATGATCCAACACCTTCTGTGAGGAAAAGGCCAGCATTTAGGGAGAAGAAGATCTCAGTGGATTCAAGAGAGGCTAATCCAGCTGCGACAGTGACAGTAAAGTCAAGCCATACTAGCCACCCTCCAGAAAGGAATGAAAGGAAGGAGGAAAGAAGCAGCAATCCTAACCATCTAGATAGACCTGAGAAGCGAATTGCAGAGGACAGGGAATCCAACAAGCGAGAACCTAGGAAGGATGGATTTTCATCAAGAGTAAGGTATGGGGGAAGTGGAGGCAATAGCAATCACAGAGGAAGAGACAAATTTAATGGAAGACAAGATAATCATCCTATTAAGACTCAAACAGAGAAGTGGAAACATGATTTGTATCAAGAGGTTAACAAAGATTCTATTCCAAAGAATGAGGATGATCAGATTGCAAAGCTGGAAGCACTCTTAGCTTCATAA

Protein sequence

>MS.gene96693.t1

MSHRDSSDSKRRHSKLDREPSPKKYRRDGKQDRERERERLTTNDHSEPPSKHSSQPPRSRSYYQHHEWGNTVQVGRSTGQREADEKVYAQSKENNQRLETGQSREQRDEKSLAKLDGNFQRRDSFRERKDDPTPSVRKRPAFREKKISVDSREANPAATVTVKSSHTSHPPERNERKEERSSNPNHLDRPEKRIAEDRESNKREPRKDGFSSRVRYGGSGGNSNHRGRDKFNGRQDNHPIKTQTEKWKHDLYQEVNKDSIPKNEDDQIAKLEALLAS