Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96693.t1 | XP_024626745.1 | 84.1 | 277 | 37 | 2 | 1 | 277 | 1 | 270 | 7.30E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96693.t1 | I3SPL3 | 80.1 | 277 | 39 | 3 | 1 | 277 | 1 | 261 | 3.4e-89 | 337.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene96693 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene96693 | 0.821785 | 3.36E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene96693 | 0.830113 | 3.52E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene96693 | 0.848492 | 5.92E-60 | -1.69E-46 |
| MS.gene051705 | MS.gene96693 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene96693 | 0.81906 | 1.42E-52 | -1.69E-46 |
| MS.gene053298 | MS.gene96693 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene96693 | 0.822086 | 2.86E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene96693 | 0.801485 | 8.80E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene96693 | 0.820569 | 6.40E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene96693 | 0.810021 | 1.42E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene96693 | 0.817833 | 2.69E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene96693 | 0.869195 | 3.71E-66 | -1.69E-46 |
| MS.gene056403 | MS.gene96693 | 0.832154 | 1.11E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene96693 | 0.819055 | 1.42E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene96693 | 0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene96693 | 0.800256 | 1.57E-48 | -1.69E-46 |
| MS.gene058911 | MS.gene96693 | 0.803024 | 4.25E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene96693 | 0.82827 | 9.87E-55 | -1.69E-46 |
| MS.gene059935 | MS.gene96693 | 0.800046 | 1.73E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene96693 | 0.824129 | 9.54E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene96693 | 0.806465 | 8.12E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene96693 | 0.811053 | 8.49E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96693.t1 | MTR_1g106210 | 93.502 | 277 | 2 | 3 | 1 | 277 | 1 | 261 | 0.0 | 499 |
| MS.gene96693.t1 | MTR_5g005040 | 39.333 | 150 | 63 | 5 | 125 | 272 | 109 | 232 | 3.70e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96693.t1 | AT3G19650 | 32.051 | 312 | 152 | 9 | 7 | 277 | 10 | 302 | 5.23e-17 | 79.7 |
Find 66 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTTTCATTCCTTTC+TGG | 0.052010 | 1.1:-76430356 | None:intergenic |
| CCATCTCTTCTATATTTCTT+AGG | 0.105254 | 1.1:-76428249 | None:intergenic |
| ATCTGATCATCCTCATTCTT+TGG | 0.243825 | 1.1:-76430626 | None:intergenic |
| TGAGGAAAAGGCCAGCATTT+AGG | 0.247990 | 1.1:+76430252 | MS.gene96693:CDS |
| TTTCTGGAGGGTGGCTAGTA+TGG | 0.266311 | 1.1:-76430340 | None:intergenic |
| TGAGAAATCACTGGCTAAAC+TGG | 0.294321 | 1.1:+76430169 | MS.gene96693:CDS |
| GAGGAAAAGGCCAGCATTTA+GGG | 0.296936 | 1.1:+76430253 | MS.gene96693:CDS |
| TTCTCTGTTTGAGTCTTAAT+AGG | 0.302168 | 1.1:-76430560 | None:intergenic |
| CTTCCTAGGTTCTCGCTTGT+TGG | 0.303209 | 1.1:-76430444 | None:intergenic |
| CATCTCTTCTATATTTCTTA+GGG | 0.330904 | 1.1:-76428248 | None:intergenic |
| AGAGGAAGAGACAAATTTAA+TGG | 0.334230 | 1.1:+76430521 | MS.gene96693:CDS |
| TTTGACCTGTCTCCAACCTT+TGG | 0.360011 | 1.1:-76430130 | None:intergenic |
| TCCTCTGCAATTCGCTTCTC+AGG | 0.377354 | 1.1:-76430413 | None:intergenic |
| GCTTCTCAGGTCTATCTAGA+TGG | 0.381632 | 1.1:-76430400 | None:intergenic |
| TCAGGTCTATCTAGATGGTT+AGG | 0.410188 | 1.1:-76430395 | None:intergenic |
| TGATAATAAGAGCGAGATCT+TGG | 0.413507 | 1.1:-76428354 | None:intergenic |
| AAGATCTCGCTCTTATTATC+AGG | 0.426217 | 1.1:+76428356 | MS.gene96693:CDS |
| GATGAAAATCCATCCTTCCT+AGG | 0.435435 | 1.1:-76430458 | None:intergenic |
| TCCTTTCATTCCTTTCTGGA+GGG | 0.447281 | 1.1:-76430352 | None:intergenic |
| TGGAGGTTGAGATGAATGTT+TGG | 0.448773 | 1.1:-76428334 | None:intergenic |
| GGATGATCAGATTGCAAAGC+TGG | 0.457045 | 1.1:+76430637 | MS.gene96693:CDS |
| TTCCTTTCATTCCTTTCTGG+AGG | 0.457901 | 1.1:-76430353 | None:intergenic |
| CAACACCTTCTGTGAGGAAA+AGG | 0.461132 | 1.1:+76430240 | MS.gene96693:CDS |
| TTTACTGTCACTGTCGCAGC+TGG | 0.462931 | 1.1:-76430311 | None:intergenic |
| TGGTTCAGAATGATCATTTG+TGG | 0.481130 | 1.1:-76428307 | None:intergenic |
| ATCTTCTTCTCCCTAAATGC+TGG | 0.485997 | 1.1:-76430263 | None:intergenic |
| AAAGGTATATGCTCAAAGTA+AGG | 0.495225 | 1.1:+76430100 | MS.gene96693:CDS |
| AGAATGACGACGCTTCGAAT+CGG | 0.503307 | 1.1:-76428105 | None:intergenic |
| TTTCATTCCTTTCTGGAGGG+TGG | 0.506208 | 1.1:-76430349 | None:intergenic |
| TTTCATCAAGAGTAAGGTAT+GGG | 0.512420 | 1.1:+76430474 | MS.gene96693:CDS |
| TGGTCGAAGCACTGGTCAAA+GGG | 0.514223 | 1.1:+76429951 | MS.gene96693:CDS |
| GTGCAGGTTGGTCGAAGCAC+TGG | 0.521659 | 1.1:+76429943 | MS.gene96693:CDS |
| AGAAGCGAATTGCAGAGGAC+AGG | 0.525004 | 1.1:+76430417 | MS.gene96693:CDS |
| CCTAAGAAATATAGAAGAGA+TGG | 0.536031 | 1.1:+76428249 | MS.gene96693:CDS |
| TAAGGAGAATAACCAAAGGT+TGG | 0.542846 | 1.1:+76430118 | MS.gene96693:CDS |
| AATAACCAAAGGTTGGAGAC+AGG | 0.542889 | 1.1:+76430125 | MS.gene96693:CDS |
| TTGGTCGAAGCACTGGTCAA+AGG | 0.551358 | 1.1:+76429950 | MS.gene96693:CDS |
| GAAGCGAATTGCAGAGGACA+GGG | 0.551739 | 1.1:+76430418 | MS.gene96693:CDS |
| TTAAGACTCAAACAGAGAAG+TGG | 0.554278 | 1.1:+76430564 | MS.gene96693:CDS |
| TAATAAGAGCGAGATCTTGG+AGG | 0.562376 | 1.1:-76428351 | None:intergenic |
| GCAAAGAGATGAGAAATCAC+TGG | 0.563837 | 1.1:+76430160 | MS.gene96693:CDS |
| AAGCGAGAACCTAGGAAGGA+TGG | 0.574352 | 1.1:+76430449 | MS.gene96693:CDS |
| ACCCTCCAGAAAGGAATGAA+AGG | 0.576042 | 1.1:+76430351 | MS.gene96693:CDS |
| TCCAGAAAGGAATGAAAGGA+AGG | 0.580588 | 1.1:+76430355 | MS.gene96693:CDS |
| ATACTAGCCACCCTCCAGAA+AGG | 0.585699 | 1.1:+76430342 | MS.gene96693:CDS |
| GAAACATGATTTGTATCAAG+AGG | 0.586742 | 1.1:+76430586 | MS.gene96693:CDS |
| AAATCACTGGCTAAACTGGA+TGG | 0.588753 | 1.1:+76430173 | MS.gene96693:CDS |
| AGATTCTATTCCAAAGAATG+AGG | 0.590814 | 1.1:+76430616 | MS.gene96693:CDS |
| ATGACGACGCTTCGAATCGG+AGG | 0.593613 | 1.1:-76428102 | None:intergenic |
| ACCTGAGAAGCGAATTGCAG+AGG | 0.607322 | 1.1:+76430412 | MS.gene96693:CDS |
| TGAATGGGGCAATACTGTGC+AGG | 0.607456 | 1.1:+76429927 | MS.gene96693:CDS |
| TTCATCAAGAGTAAGGTATG+GGG | 0.620262 | 1.1:+76430475 | MS.gene96693:CDS |
| CAACAAGCGAGAACCTAGGA+AGG | 0.622024 | 1.1:+76430445 | MS.gene96693:CDS |
| GATCTCAGTGGATTCAAGAG+AGG | 0.625358 | 1.1:+76430283 | MS.gene96693:CDS |
| AGAAAGGAATGAAAGGAAGG+AGG | 0.636511 | 1.1:+76430358 | MS.gene96693:CDS |
| TCATCAAGAGTAAGGTATGG+GGG | 0.637056 | 1.1:+76430476 | MS.gene96693:CDS |
| AATCCAACAAGCGAGAACCT+AGG | 0.638185 | 1.1:+76430441 | MS.gene96693:CDS |
| ACTGGTCAAAGGGAAGCTGA+TGG | 0.653810 | 1.1:+76429961 | MS.gene96693:CDS |
| GGTTGAGATGAATGTTTGGA+CGG | 0.657350 | 1.1:-76428330 | None:intergenic |
| CTAAGCTCGATCGTGAACCA+AGG | 0.670920 | 1.1:+76428126 | MS.gene96693:CDS |
| TGGGGCAATACTGTGCAGGT+TGG | 0.672427 | 1.1:+76429931 | MS.gene96693:CDS |
| AAAGTAAGGAGAATAACCAA+AGG | 0.679155 | 1.1:+76430114 | MS.gene96693:CDS |
| TGAGATGAATGTTTGGACGG+TGG | 0.681415 | 1.1:-76428327 | None:intergenic |
| ATGATCCAACACCTTCTGTG+AGG | 0.687855 | 1.1:+76430234 | MS.gene96693:CDS |
| TAGGGAGAAGAAGATCTCAG+TGG | 0.726006 | 1.1:+76430271 | MS.gene96693:CDS |
| GGAGGCAATAGCAATCACAG+AGG | 0.738956 | 1.1:+76430503 | MS.gene96693:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATTTATTTTTAAACAA+AGG | - | chr1.1:76429107-76429126 | None:intergenic | 10.0% |
| !!! | AATCATTTTATTTAAATGTT+AGG | + | chr1.1:76428823-76428842 | MS.gene96693:intron | 10.0% |
| !!! | ATCATTTTATTTAAATGTTA+GGG | + | chr1.1:76428824-76428843 | MS.gene96693:intron | 10.0% |
| !!! | TTGTCTTTTATTAACATTTA+TGG | - | chr1.1:76429548-76429567 | None:intergenic | 15.0% |
| !! | AAATGTTAATAAAAGACAAC+TGG | + | chr1.1:76429549-76429568 | MS.gene96693:intron | 20.0% |
| !! | AACATCTATAGCATATAAAA+AGG | - | chr1.1:76429802-76429821 | None:intergenic | 20.0% |
| !! | ACATCTATAGCATATAAAAA+GGG | - | chr1.1:76429801-76429820 | None:intergenic | 20.0% |
| !! | TACCTTTATATAAACAGTAT+TGG | + | chr1.1:76429708-76429727 | MS.gene96693:intron | 20.0% |
| !! | TTAATGTGCTTCTTTATATT+TGG | + | chr1.1:76428410-76428429 | MS.gene96693:intron | 20.0% |
| !! | TTCCAATACTGTTTATATAA+AGG | - | chr1.1:76429713-76429732 | None:intergenic | 20.0% |
| !!! | AATTTTTTTATCTCATTCTG+AGG | - | chr1.1:76428797-76428816 | None:intergenic | 20.0% |
| ! | AAAACCAATCTCAACATTTA+TGG | - | chr1.1:76429640-76429659 | None:intergenic | 25.0% |
| ! | ACCCAATACAACAATATATA+CGG | - | chr1.1:76429515-76429534 | None:intergenic | 25.0% |
| ! | ATGCAAATTTGAATGTAGTT+AGG | - | chr1.1:76428449-76428468 | None:intergenic | 25.0% |
| ! | CATCTCTTCTATATTTCTTA+GGG | - | chr1.1:76428251-76428270 | None:intergenic | 25.0% |
| ! | CTAAATCAAGTAGTTAACTT+GGG | + | chr1.1:76429213-76429232 | MS.gene96693:intron | 25.0% |
| ! | TAGGATTTGCATTATGATTA+AGG | - | chr1.1:76429413-76429432 | None:intergenic | 25.0% |
| ! | TCTAAATCAAGTAGTTAACT+TGG | + | chr1.1:76429212-76429231 | MS.gene96693:intron | 25.0% |
| ! | TGGTAAACAATAAATACGTT+GGG | + | chr1.1:76429298-76429317 | MS.gene96693:intron | 25.0% |
| ! | TTGGAAAGAAAACATCTTAA+TGG | + | chr1.1:76429727-76429746 | MS.gene96693:intron | 25.0% |
| ! | TTGTCAATAGCATATTATAG+CGG | + | chr1.1:76428676-76428695 | MS.gene96693:intron | 25.0% |
| ! | TTTATTGTATATGGATGGTT+TGG | + | chr1.1:76430029-76430048 | MS.gene96693:intron | 25.0% |
| !!! | GTTTTCCAACATTTTAAGTT+TGG | - | chr1.1:76428652-76428671 | None:intergenic | 25.0% |
| !!! | TAAGTGTGTGTTTGTTTTAT+CGG | - | chr1.1:76429020-76429039 | None:intergenic | 25.0% |
| !!! | TCTTTTCGCTTTATTGTATA+TGG | + | chr1.1:76430020-76430039 | MS.gene96693:intron | 25.0% |
| !!! | TGTATGCAAACTATTTTTCT+GGG | + | chr1.1:76429828-76429847 | MS.gene96693:intron | 25.0% |
| AAAGTAAGGAGAATAACCAA+AGG | + | chr1.1:76430114-76430133 | MS.gene96693:CDS | 30.0% | |
| AATCTCAACATTTATGGTGA+AGG | - | chr1.1:76429634-76429653 | None:intergenic | 30.0% | |
| AATGGACATTGAAGATAACT+TGG | + | chr1.1:76429745-76429764 | MS.gene96693:intron | 30.0% | |
| ACATCCATTTATGCAATGTT+TGG | + | chr1.1:76428885-76428904 | MS.gene96693:intron | 30.0% | |
| AGAGGAAGAGACAAATTTAA+TGG | + | chr1.1:76430521-76430540 | MS.gene96693:CDS | 30.0% | |
| AGATTCTATTCCAAAGAATG+AGG | + | chr1.1:76430616-76430635 | MS.gene96693:CDS | 30.0% | |
| ATGTCCAAACATTGCATAAA+TGG | - | chr1.1:76428892-76428911 | None:intergenic | 30.0% | |
| CCAAACCAAACTTAAAATGT+TGG | + | chr1.1:76428644-76428663 | MS.gene96693:intron | 30.0% | |
| CCATCTCTTCTATATTTCTT+AGG | - | chr1.1:76428252-76428271 | None:intergenic | 30.0% | |
| CCTAAGAAATATAGAAGAGA+TGG | + | chr1.1:76428249-76428268 | MS.gene96693:CDS | 30.0% | |
| CTGGTAAACAATAAATACGT+TGG | + | chr1.1:76429297-76429316 | MS.gene96693:intron | 30.0% | |
| GCCGTATATATTGTTGTATT+GGG | + | chr1.1:76429511-76429530 | MS.gene96693:intron | 30.0% | |
| TAAACAATAAATACGTTGGG+AGG | + | chr1.1:76429301-76429320 | MS.gene96693:intron | 30.0% | |
| TAAATGGATGTCTCACTAAA+TGG | - | chr1.1:76428876-76428895 | None:intergenic | 30.0% | |
| TAACATCGAGAAAATGGAAA+TGG | - | chr1.1:76429438-76429457 | None:intergenic | 30.0% | |
| TGATTTCTCTATTCACAAAG+AGG | + | chr1.1:76429122-76429141 | MS.gene96693:intron | 30.0% | |
| TGCCGTATATATTGTTGTAT+TGG | + | chr1.1:76429510-76429529 | MS.gene96693:intron | 30.0% | |
| TTATCGGTGGAATAAACAAA+CGG | - | chr1.1:76429004-76429023 | None:intergenic | 30.0% | |
| TTCACCATAAATGTTGAGAT+TGG | + | chr1.1:76429633-76429652 | MS.gene96693:intron | 30.0% | |
| TTCTCTGTTTGAGTCTTAAT+AGG | - | chr1.1:76430563-76430582 | None:intergenic | 30.0% | |
| TTTATTGTTTACCAGCTTGT+AGG | - | chr1.1:76429292-76429311 | None:intergenic | 30.0% | |
| TTTCATCAAGAGTAAGGTAT+GGG | + | chr1.1:76430474-76430493 | MS.gene96693:CDS | 30.0% | |
| ! | AAAGGTATATGCTCAAAGTA+AGG | + | chr1.1:76430100-76430119 | MS.gene96693:CDS | 30.0% |
| ! | ACTACTTGATTTAGAGCTAA+AGG | - | chr1.1:76429207-76429226 | None:intergenic | 30.0% |
| ! | ATGGATTTTCATCAAGAGTA+AGG | + | chr1.1:76430468-76430487 | MS.gene96693:CDS | 30.0% |
| ! | GAAACATGATTTGTATCAAG+AGG | + | chr1.1:76430586-76430605 | MS.gene96693:CDS | 30.0% |
| ! | TTCGCTTTATTGTATATGGA+TGG | + | chr1.1:76430024-76430043 | MS.gene96693:intron | 30.0% |
| ! | TTTTAACAGCATCATGAATG+GGG | + | chr1.1:76429913-76429932 | MS.gene96693:intron | 30.0% |
| ! | TTTTCATCAAGAGTAAGGTA+TGG | + | chr1.1:76430473-76430492 | MS.gene96693:CDS | 30.0% |
| !! | ATGTAGCTTCTTTAAAACCA+CGG | - | chr1.1:76428954-76428973 | None:intergenic | 30.0% |
| !! | GTATGCAAACTATTTTTCTG+GGG | + | chr1.1:76429829-76429848 | MS.gene96693:intron | 30.0% |
| !! | GTGTATGCAAACTATTTTTC+TGG | + | chr1.1:76429827-76429846 | MS.gene96693:intron | 30.0% |
| !! | GTTGATAACATTGTTGGAAA+AGG | + | chr1.1:76429061-76429080 | MS.gene96693:intron | 30.0% |
| !! | GTTTGGAATCGAAGAATTTT+GGG | - | chr1.1:76430077-76430096 | None:intergenic | 30.0% |
| !! | GTTTTAACAGCATCATGAAT+GGG | + | chr1.1:76429912-76429931 | MS.gene96693:intron | 30.0% |
| !! | TGTTTGGAATCGAAGAATTT+TGG | - | chr1.1:76430078-76430097 | None:intergenic | 30.0% |
| !!! | CCAACATTTTAAGTTTGGTT+TGG | - | chr1.1:76428647-76428666 | None:intergenic | 30.0% |
| !!! | TGTTTTAACAGCATCATGAA+TGG | + | chr1.1:76429911-76429930 | MS.gene96693:intron | 30.0% |
| AACAATATATACGGCAATCC+TGG | - | chr1.1:76429506-76429525 | None:intergenic | 35.0% | |
| AAGATCTCGCTCTTATTATC+AGG | + | chr1.1:76428356-76428375 | MS.gene96693:CDS | 35.0% | |
| ACTGACCTCCTTATAAATCA+AGG | - | chr1.1:76429675-76429694 | None:intergenic | 35.0% | |
| AGTAGCTAACATCGAGAAAA+TGG | - | chr1.1:76429444-76429463 | None:intergenic | 35.0% | |
| ATCTGATCATCCTCATTCTT+TGG | - | chr1.1:76430629-76430648 | None:intergenic | 35.0% | |
| ATGTAGTTAGGAACAGAAGT+TGG | - | chr1.1:76428437-76428456 | None:intergenic | 35.0% | |
| ATGTTAGCTACTACAACATG+TGG | + | chr1.1:76429452-76429471 | MS.gene96693:intron | 35.0% | |
| CTGACCTCCTTATAAATCAA+GGG | - | chr1.1:76429674-76429693 | None:intergenic | 35.0% | |
| GATGCTGTTAAAACATGCAT+TGG | - | chr1.1:76429906-76429925 | None:intergenic | 35.0% | |
| GTTACTTATTCGAGATTACC+AGG | + | chr1.1:76429485-76429504 | MS.gene96693:intron | 35.0% | |
| TAAGGAGAATAACCAAAGGT+TGG | + | chr1.1:76430118-76430137 | MS.gene96693:CDS | 35.0% | |
| TCTTCGATTCCAAACAGAAA+AGG | + | chr1.1:76430082-76430101 | MS.gene96693:intron | 35.0% | |
| TGACCTCCTTATAAATCAAG+GGG | - | chr1.1:76429673-76429692 | None:intergenic | 35.0% | |
| TGATAATAAGAGCGAGATCT+TGG | - | chr1.1:76428357-76428376 | None:intergenic | 35.0% | |
| TGGTTCAGAATGATCATTTG+TGG | - | chr1.1:76428310-76428329 | None:intergenic | 35.0% | |
| TGTATATCCCTGCATACAAT+TGG | + | chr1.1:76429252-76429271 | MS.gene96693:intron | 35.0% | |
| TTAAGACTCAAACAGAGAAG+TGG | + | chr1.1:76430564-76430583 | MS.gene96693:CDS | 35.0% | |
| TTATGCAATGTTTGGACATG+TGG | + | chr1.1:76428893-76428912 | MS.gene96693:intron | 35.0% | |
| TTCATCAAGAGTAAGGTATG+GGG | + | chr1.1:76430475-76430494 | MS.gene96693:CDS | 35.0% | |
| ! | ACAACTGGAATTTGCTTTGA+CGG | + | chr1.1:76429564-76429583 | MS.gene96693:intron | 35.0% |
| ! | GAGCATATACCTTTTCTGTT+TGG | - | chr1.1:76430094-76430113 | None:intergenic | 35.0% |
| !!! | TTTTATCTCATTCTGAGGTG+AGG | - | chr1.1:76428792-76428811 | None:intergenic | 35.0% |
| AAATACGTTGGGAGGAAACT+GGG | + | chr1.1:76429309-76429328 | MS.gene96693:intron | 40.0% | |
| AAGCTGACCAATTGTATGCA+GGG | - | chr1.1:76429262-76429281 | None:intergenic | 40.0% | |
| AATAACCAAAGGTTGGAGAC+AGG | + | chr1.1:76430125-76430144 | MS.gene96693:CDS | 40.0% | |
| AATTGCTCACAACTTGTACC+AGG | - | chr1.1:76429384-76429403 | None:intergenic | 40.0% | |
| AGAAAGGAATGAAAGGAAGG+AGG | + | chr1.1:76430358-76430377 | MS.gene96693:CDS | 40.0% | |
| AGTAGAGCAACCTATTGTAG+CGG | + | chr1.1:76428730-76428749 | MS.gene96693:intron | 40.0% | |
| ATCAACCCCACATAGTGAAA+TGG | - | chr1.1:76429047-76429066 | None:intergenic | 40.0% | |
| ATCTTCTTCTCCCTAAATGC+TGG | - | chr1.1:76430266-76430285 | None:intergenic | 40.0% | |
| CCAAAGCAAACAGTAACGAA+TGG | - | chr1.1:76429351-76429370 | None:intergenic | 40.0% | |
| CCATTCGTTACTGTTTGCTT+TGG | + | chr1.1:76429348-76429367 | MS.gene96693:intron | 40.0% | |
| CCTTATAAATCAAGGGGCAA+AGG | - | chr1.1:76429667-76429686 | None:intergenic | 40.0% | |
| CCTTTGCCCCTTGATTTATA+AGG | + | chr1.1:76429664-76429683 | MS.gene96693:intron | 40.0% | |
| CGAGAAAATGGAAATGGTGT+AGG | - | chr1.1:76429432-76429451 | None:intergenic | 40.0% | |
| GATGAAAATCCATCCTTCCT+AGG | - | chr1.1:76430461-76430480 | None:intergenic | 40.0% | |
| GCAAAGAGATGAGAAATCAC+TGG | + | chr1.1:76430160-76430179 | MS.gene96693:CDS | 40.0% | |
| GGTTGAGATGAATGTTTGGA+CGG | - | chr1.1:76428333-76428352 | None:intergenic | 40.0% | |
| TAAATACGTTGGGAGGAAAC+TGG | + | chr1.1:76429308-76429327 | MS.gene96693:intron | 40.0% | |
| TAATAAGAGCGAGATCTTGG+AGG | - | chr1.1:76428354-76428373 | None:intergenic | 40.0% | |
| TACACCTGAAACTTGATGGA+AGG | + | chr1.1:76428468-76428487 | MS.gene96693:intron | 40.0% | |
| TAGCTACTACAACATGTGGT+GGG | + | chr1.1:76429456-76429475 | MS.gene96693:intron | 40.0% | |
| TCAGGTCTATCTAGATGGTT+AGG | - | chr1.1:76430398-76430417 | None:intergenic | 40.0% | |
| TCATCAAGAGTAAGGTATGG+GGG | + | chr1.1:76430476-76430495 | MS.gene96693:CDS | 40.0% | |
| TCCAGAAAGGAATGAAAGGA+AGG | + | chr1.1:76430355-76430374 | MS.gene96693:CDS | 40.0% | |
| TCCTAAGAGCTTAATACCAG+AGG | - | chr1.1:76428617-76428636 | None:intergenic | 40.0% | |
| TCCTCTGGTATTAAGCTCTT+AGG | + | chr1.1:76428613-76428632 | MS.gene96693:intron | 40.0% | |
| TCCTTCCTTTCATTCCTTTC+TGG | - | chr1.1:76430359-76430378 | None:intergenic | 40.0% | |
| TCCTTTCATTCCTTTCTGGA+GGG | - | chr1.1:76430355-76430374 | None:intergenic | 40.0% | |
| TCTCACCTTTCAAAGCCATT+TGG | + | chr1.1:76428928-76428947 | MS.gene96693:intron | 40.0% | |
| TGCATACACCTGAAACTTGA+TGG | + | chr1.1:76428464-76428483 | MS.gene96693:intron | 40.0% | |
| TGGAGGTTGAGATGAATGTT+TGG | - | chr1.1:76428337-76428356 | None:intergenic | 40.0% | |
| TTAGCTACTACAACATGTGG+TGG | + | chr1.1:76429455-76429474 | MS.gene96693:intron | 40.0% | |
| TTCCTTTCATTCCTTTCTGG+AGG | - | chr1.1:76430356-76430375 | None:intergenic | 40.0% | |
| TTGCCCCTTGATTTATAAGG+AGG | + | chr1.1:76429667-76429686 | MS.gene96693:intron | 40.0% | |
| TTTACAGCTGTAGATGTGTC+CGG | + | chr1.1:76428552-76428571 | MS.gene96693:intron | 40.0% | |
| ! | AAATCACTGGCTAAACTGGA+TGG | + | chr1.1:76430173-76430192 | MS.gene96693:CDS | 40.0% |
| ! | AACTTGATGGAAGGCATGTA+TGG | + | chr1.1:76428477-76428496 | MS.gene96693:intron | 40.0% |
| ! | GAAGAAGAAGAAGTGTACCT+TGG | - | chr1.1:76428146-76428165 | None:intergenic | 40.0% |
| ! | TAGCTGCCATTTCACTATGT+GGG | + | chr1.1:76429038-76429057 | MS.gene96693:intron | 40.0% |
| ! | TGAGAAATCACTGGCTAAAC+TGG | + | chr1.1:76430169-76430188 | MS.gene96693:CDS | 40.0% |
| ! | TTAGCTGCCATTTCACTATG+TGG | + | chr1.1:76429037-76429056 | MS.gene96693:intron | 40.0% |
| !! | GAAGAGACAGTTTTCGAGAA+AGG | + | chr1.1:76430207-76430226 | MS.gene96693:CDS | 40.0% |
| !! | TCTTTAAAACCACGGCCAAA+TGG | - | chr1.1:76428946-76428965 | None:intergenic | 40.0% |
| !! | TGTGGGGTTGATAACATTGT+TGG | + | chr1.1:76429055-76429074 | MS.gene96693:intron | 40.0% |
| !!! | AAACTATTTTTCTGGGGCGT+GGG | + | chr1.1:76429835-76429854 | MS.gene96693:intron | 40.0% |
| !!! | GTGTGTGTTTGTTTTATCGG+TGG | - | chr1.1:76429017-76429036 | None:intergenic | 40.0% |
| AATCCAACAAGCGAGAACCT+AGG | + | chr1.1:76430441-76430460 | MS.gene96693:CDS | 45.0% | |
| ACCCTCCAGAAAGGAATGAA+AGG | + | chr1.1:76430351-76430370 | MS.gene96693:CDS | 45.0% | |
| ACTGACACAAACATGGACAC+CGG | - | chr1.1:76428574-76428593 | None:intergenic | 45.0% | |
| AGAATGACGACGCTTCGAAT+CGG | - | chr1.1:76428108-76428127 | None:intergenic | 45.0% | |
| ATGATCCAACACCTTCTGTG+AGG | + | chr1.1:76430234-76430253 | MS.gene96693:CDS | 45.0% | |
| CAACACCTTCTGTGAGGAAA+AGG | + | chr1.1:76430240-76430259 | MS.gene96693:CDS | 45.0% | |
| CAAGCTGACCAATTGTATGC+AGG | - | chr1.1:76429263-76429282 | None:intergenic | 45.0% | |
| CATGCCTTCCATCAAGTTTC+AGG | - | chr1.1:76428475-76428494 | None:intergenic | 45.0% | |
| GAGGAAAAGGCCAGCATTTA+GGG | + | chr1.1:76430253-76430272 | MS.gene96693:CDS | 45.0% | |
| GCTTCTCAGGTCTATCTAGA+TGG | - | chr1.1:76430403-76430422 | None:intergenic | 45.0% | |
| GGATGATCAGATTGCAAAGC+TGG | + | chr1.1:76430637-76430656 | MS.gene96693:CDS | 45.0% | |
| TAGGGAGAAGAAGATCTCAG+TGG | + | chr1.1:76430271-76430290 | MS.gene96693:CDS | 45.0% | |
| TGAGATGAATGTTTGGACGG+TGG | - | chr1.1:76428330-76428349 | None:intergenic | 45.0% | |
| TGAGGAAAAGGCCAGCATTT+AGG | + | chr1.1:76430252-76430271 | MS.gene96693:CDS | 45.0% | |
| TGTTTGTGTCAGTGCTTCGT+AGG | + | chr1.1:76428581-76428600 | MS.gene96693:intron | 45.0% | |
| TTTGACCTGTCTCCAACCTT+TGG | - | chr1.1:76430133-76430152 | None:intergenic | 45.0% | |
| ! | AGCTGCCATTTCACTATGTG+GGG | + | chr1.1:76429039-76429058 | MS.gene96693:intron | 45.0% |
| ! | GATCTCAGTGGATTCAAGAG+AGG | + | chr1.1:76430283-76430302 | MS.gene96693:CDS | 45.0% |
| ! | GCATTGGAAAGCATATACCG+AGG | - | chr1.1:76429890-76429909 | None:intergenic | 45.0% |
| ! | TGGAAGGCATGTATGGTGTT+TGG | + | chr1.1:76428484-76428503 | MS.gene96693:intron | 45.0% |
| ! | TTTCATTCCTTTCTGGAGGG+TGG | - | chr1.1:76430352-76430371 | None:intergenic | 45.0% |
| !! | ACGAAGCACTGACACAAACA+TGG | - | chr1.1:76428581-76428600 | None:intergenic | 45.0% |
| !! | CGTAGGTGTTGTTTATCCTC+TGG | + | chr1.1:76428598-76428617 | MS.gene96693:intron | 45.0% |
| !! | CTTTTCCTCACAGAAGGTGT+TGG | - | chr1.1:76430242-76430261 | None:intergenic | 45.0% |
| !!! | CAAACTATTTTTCTGGGGCG+TGG | + | chr1.1:76429834-76429853 | MS.gene96693:intron | 45.0% |
| !! | TATATATCAATATAAAATTA+AGG | - | chr1.1:76429994-76430013 | None:intergenic | 5.0% |
| !!! | ATTTAAATAAAATGATTTTA+CGG | - | chr1.1:76428820-76428839 | None:intergenic | 5.0% |
| AAGCGAGAACCTAGGAAGGA+TGG | + | chr1.1:76430449-76430468 | MS.gene96693:CDS | 50.0% | |
| ACCTGAGAAGCGAATTGCAG+AGG | + | chr1.1:76430412-76430431 | MS.gene96693:CDS | 50.0% | |
| ACTGGTCAAAGGGAAGCTGA+TGG | + | chr1.1:76429961-76429980 | MS.gene96693:CDS | 50.0% | |
| AGAAGCGAATTGCAGAGGAC+AGG | + | chr1.1:76430417-76430436 | MS.gene96693:CDS | 50.0% | |
| AGAGTAAGGTATGGGGGAAG+TGG | + | chr1.1:76430482-76430501 | MS.gene96693:CDS | 50.0% | |
| ATACTAGCCACCCTCCAGAA+AGG | + | chr1.1:76430342-76430361 | MS.gene96693:CDS | 50.0% | |
| CAACAAGCGAGAACCTAGGA+AGG | + | chr1.1:76430445-76430464 | MS.gene96693:CDS | 50.0% | |
| CTAAGCTCGATCGTGAACCA+AGG | + | chr1.1:76428126-76428145 | MS.gene96693:CDS | 50.0% | |
| CTTCCTAGGTTCTCGCTTGT+TGG | - | chr1.1:76430447-76430466 | None:intergenic | 50.0% | |
| CTTTCAAAGCCATTTGGCCG+TGG | + | chr1.1:76428934-76428953 | MS.gene96693:intron | 50.0% | |
| GAAGCGAATTGCAGAGGACA+GGG | + | chr1.1:76430418-76430437 | MS.gene96693:CDS | 50.0% | |
| GCTTGTAGCTACCTACAAGC+TGG | + | chr1.1:76429278-76429297 | MS.gene96693:intron | 50.0% | |
| GGAGGCAATAGCAATCACAG+AGG | + | chr1.1:76430503-76430522 | MS.gene96693:CDS | 50.0% | |
| GTGAGGCACAATAGCATCTG+CGG | - | chr1.1:76428775-76428794 | None:intergenic | 50.0% | |
| TCCTCTGCAATTCGCTTCTC+AGG | - | chr1.1:76430416-76430435 | None:intergenic | 50.0% | |
| TGAATGGGGCAATACTGTGC+AGG | + | chr1.1:76429927-76429946 | MS.gene96693:CDS | 50.0% | |
| TGCTTTGGCTGTTAACTGCC+TGG | + | chr1.1:76429363-76429382 | MS.gene96693:intron | 50.0% | |
| TTTACTGTCACTGTCGCAGC+TGG | - | chr1.1:76430314-76430333 | None:intergenic | 50.0% | |
| ! | ATCTGCGGCAGCCACTATTT+TGG | - | chr1.1:76428760-76428779 | None:intergenic | 50.0% |
| ! | CTACTACAACATGTGGTGGG+TGG | + | chr1.1:76429459-76429478 | MS.gene96693:intron | 50.0% |
| ! | GCATATACCGAGGCACTTGA+AGG | - | chr1.1:76429880-76429899 | None:intergenic | 50.0% |
| ! | TTTCTGGAGGGTGGCTAGTA+TGG | - | chr1.1:76430343-76430362 | None:intergenic | 50.0% |
| !! | CACGGCCAAATGGCTTTGAA+AGG | - | chr1.1:76428936-76428955 | None:intergenic | 50.0% |
| !! | TGGTCGAAGCACTGGTCAAA+GGG | + | chr1.1:76429951-76429970 | MS.gene96693:CDS | 50.0% |
| !! | TTGGTCGAAGCACTGGTCAA+AGG | + | chr1.1:76429950-76429969 | MS.gene96693:CDS | 50.0% |
| !! | TTTTGGCTGGCCGCTACAAT+AGG | - | chr1.1:76428743-76428762 | None:intergenic | 50.0% |
| ATGACGACGCTTCGAATCGG+AGG | - | chr1.1:76428105-76428124 | None:intergenic | 55.0% | |
| GTAAGGTATGGGGGAAGTGG+AGG | + | chr1.1:76430485-76430504 | MS.gene96693:CDS | 55.0% | |
| GTAGCGGCCAGCCAAAATAG+TGG | + | chr1.1:76428746-76428765 | MS.gene96693:intron | 55.0% | |
| TGCATGTCGCGTTGCAGTCA+GGG | - | chr1.1:76428708-76428727 | None:intergenic | 55.0% | |
| TGGGGCAATACTGTGCAGGT+TGG | + | chr1.1:76429931-76429950 | MS.gene96693:CDS | 55.0% | |
| TTGCATGTCGCGTTGCAGTC+AGG | - | chr1.1:76428709-76428728 | None:intergenic | 55.0% | |
| ! | ACCGAGGCACTTGAAGGCAT+GGG | - | chr1.1:76429874-76429893 | None:intergenic | 55.0% |
| ! | TACCGAGGCACTTGAAGGCA+TGG | - | chr1.1:76429875-76429894 | None:intergenic | 55.0% |
| !!! | GCTGGCCTTTTCCTCACAGA+AGG | - | chr1.1:76430248-76430267 | None:intergenic | 55.0% |
| CCCCATGCCTTCAAGTGCCT+CGG | + | chr1.1:76429870-76429889 | MS.gene96693:intron | 60.0% | |
| GCATGTCGCGTTGCAGTCAG+GGG | - | chr1.1:76428707-76428726 | None:intergenic | 60.0% | |
| ! | CCGAGGCACTTGAAGGCATG+GGG | - | chr1.1:76429873-76429892 | None:intergenic | 60.0% |
| !! | GTGCAGGTTGGTCGAAGCAC+TGG | + | chr1.1:76429943-76429962 | MS.gene96693:CDS | 60.0% |
| !!! | GCGGCAGCCACTATTTTGGC+TGG | - | chr1.1:76428756-76428775 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76428086 | 76430679 | 76428086 | ID=MS.gene96693 |
| chr1.1 | mRNA | 76428086 | 76430679 | 76428086 | ID=MS.gene96693.t1;Parent=MS.gene96693 |
| chr1.1 | exon | 76428086 | 76428147 | 76428086 | ID=MS.gene96693.t1.exon1;Parent=MS.gene96693.t1 |
| chr1.1 | CDS | 76428086 | 76428147 | 76428086 | ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1 |
| chr1.1 | exon | 76428248 | 76428377 | 76428248 | ID=MS.gene96693.t1.exon2;Parent=MS.gene96693.t1 |
| chr1.1 | CDS | 76428248 | 76428377 | 76428248 | ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1 |
| chr1.1 | exon | 76429922 | 76429982 | 76429922 | ID=MS.gene96693.t1.exon3;Parent=MS.gene96693.t1 |
| chr1.1 | CDS | 76429922 | 76429982 | 76429922 | ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1 |
| chr1.1 | exon | 76430099 | 76430679 | 76430099 | ID=MS.gene96693.t1.exon4;Parent=MS.gene96693.t1 |
| chr1.1 | CDS | 76430099 | 76430679 | 76430099 | ID=cds.MS.gene96693.t1;Parent=MS.gene96693.t1 |
| Gene Sequence |
| Protein sequence |
