Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97455.t1 | XP_003621016.1 | 99.3 | 303 | 2 | 0 | 1 | 303 | 42 | 344 | 2.40E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97455.t1 | Q8IXU6 | 43.6 | 264 | 142 | 2 | 1 | 257 | 69 | 332 | 3.7e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97455.t1 | G7KWQ4 | 99.3 | 303 | 2 | 0 | 1 | 303 | 42 | 344 | 1.8e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene97455 | 0.813527 | 2.45E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene97455 | 0.802458 | 5.56E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene97455 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene97455 | 0.810302 | 1.23E-50 | -1.69E-46 |
| MS.gene050962 | MS.gene97455 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene97455 | 0.806639 | 7.46E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene97455 | 0.82028 | 7.46E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene97455 | 0.808719 | 2.70E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene97455 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene97455 | -0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene97455 | 0.807029 | 6.17E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene97455 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene97455 | 0.831616 | 1.51E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene97455 | 0.81953 | 1.11E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene97455 | 0.805799 | 1.12E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene97455 | 0.81273 | 3.66E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene97455 | 0.821844 | 3.25E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene97455 | 0.802738 | 4.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAAGCAAGCACCTTTAG+AGG | 0.281729 | 7.4:+93384515 | None:intergenic |
| TGGTACTATTATATACTTCT+TGG | 0.287931 | 7.4:-93383756 | MS.gene97455:CDS |
| ATGGCAATGTTAGGTCTCTT+TGG | 0.309096 | 7.4:-93382264 | MS.gene97455:CDS |
| TCGTCGTATTGCAGAGGTTT+TGG | 0.323324 | 7.4:-93380808 | MS.gene97455:intron |
| TTTGCTATGAGTTGCTGAAC+TGG | 0.331987 | 7.4:+93380720 | None:intergenic |
| AAATCTATTCACTGGTCGGC+TGG | 0.333126 | 7.4:-93382103 | MS.gene97455:CDS |
| CATGCGTCATGCTGCTTACA+TGG | 0.358791 | 7.4:-93383259 | MS.gene97455:CDS |
| ATTATGCTTTCCAGGTTGAT+TGG | 0.366989 | 7.4:-93381293 | MS.gene97455:intron |
| TATAGATTCAAGAAGATAAC+TGG | 0.382296 | 7.4:-93383218 | MS.gene97455:CDS |
| ATTCGTACCTTAAGCAGAAC+AGG | 0.384721 | 7.4:+93381622 | None:intergenic |
| TCATCCTGTCTGATTGCAAC+AGG | 0.386095 | 7.4:+93380748 | None:intergenic |
| GGTGGAAGTAATCCTCGTTT+AGG | 0.403367 | 7.4:-93382941 | MS.gene97455:CDS |
| GGTGTAATTGTTTGCATAGC+CGG | 0.409701 | 7.4:-93383197 | MS.gene97455:CDS |
| GCGTTTGGTGCTGTTGTCAT+TGG | 0.411820 | 7.4:-93381258 | MS.gene97455:CDS |
| CATAGCAAAGGAAATGTGTC+TGG | 0.413561 | 7.4:-93380706 | MS.gene97455:CDS |
| TCTAGTCCCTGTTCTGCTTA+AGG | 0.413618 | 7.4:-93381629 | MS.gene97455:intron |
| GAAGAGCTCATGGCAATGTT+AGG | 0.420524 | 7.4:-93382273 | MS.gene97455:CDS |
| CTATTATATACTTCTTGGAT+TGG | 0.443539 | 7.4:-93383751 | MS.gene97455:CDS |
| TGTTTCTAATACAGGCGAAA+TGG | 0.446396 | 7.4:-93383776 | MS.gene97455:intron |
| CTTTCAAGGATACATTTGAA+TGG | 0.460817 | 7.4:+93382227 | None:intergenic |
| GGTTCTTCAACAGCATTAGC+AGG | 0.462571 | 7.4:+93380769 | None:intergenic |
| TGGATGTACTACTTGGCGTT+TGG | 0.468134 | 7.4:-93381273 | MS.gene97455:CDS |
| TTTAGAAAGGACTGTGATGT+TGG | 0.485502 | 7.4:+93384590 | None:intergenic |
| AATCTATTCACTGGTCGGCT+GGG | 0.490397 | 7.4:-93382102 | MS.gene97455:CDS |
| GGAGACGTTCTTGTTATCGC+TGG | 0.498105 | 7.4:-93382920 | MS.gene97455:CDS |
| CTACAGAAGAAAGCCTCTAA+AGG | 0.503377 | 7.4:-93384528 | MS.gene97455:intron |
| CACCTTATGAACAGTTGTGA+AGG | 0.528488 | 7.4:-93383336 | MS.gene97455:intron |
| GGTTGATTGGATGTACTACT+TGG | 0.533288 | 7.4:-93381280 | MS.gene97455:CDS |
| ATGAGCTTAAATCTATTCAC+TGG | 0.535645 | 7.4:-93382111 | MS.gene97455:CDS |
| ATCTATTCACTGGTCGGCTG+GGG | 0.536644 | 7.4:-93382101 | MS.gene97455:CDS |
| GCAATGTTAGGTCTCTTTGG+TGG | 0.537905 | 7.4:-93382261 | MS.gene97455:CDS |
| TATACTTTCTTAAGCTACCC+AGG | 0.539167 | 7.4:+93380672 | None:intergenic |
| TGTTGCAATCAGACAGGATG+AGG | 0.549578 | 7.4:-93380746 | MS.gene97455:CDS |
| GACATTACTGAATGCATACA+AGG | 0.557186 | 7.4:+93382892 | None:intergenic |
| GTGTGATGCTACTTGACTGC+TGG | 0.567229 | 7.4:-93383289 | MS.gene97455:CDS |
| CATCTTCGCTTACCATGAGA+AGG | 0.573397 | 7.4:-93381412 | MS.gene97455:intron |
| CTCTTCTGACCTCAGACATG+TGG | 0.578272 | 7.4:-93381449 | MS.gene97455:CDS |
| TGCTGATAGAGAAGAGCTCA+TGG | 0.583244 | 7.4:-93382283 | MS.gene97455:CDS |
| AGAACCTGTTGCAATCAGAC+AGG | 0.585681 | 7.4:-93380752 | MS.gene97455:CDS |
| AAGCAGCATGACGCATGGAA+TGG | 0.591362 | 7.4:+93383265 | None:intergenic |
| ACTTCTTGGATTGGTTGATG+TGG | 0.592336 | 7.4:-93383742 | MS.gene97455:CDS |
| CATGTAAGCAGCATGACGCA+TGG | 0.595629 | 7.4:+93383260 | None:intergenic |
| GCTTAAATCTATTCACTGGT+CGG | 0.611387 | 7.4:-93382107 | MS.gene97455:CDS |
| AAATACAACTAGGACAAGGC+CGG | 0.612279 | 7.4:+93383178 | None:intergenic |
| ATAGCAAAGGAAATGTGTCT+GGG | 0.615099 | 7.4:-93380705 | MS.gene97455:CDS |
| AGTTCAGCAACTCATAGCAA+AGG | 0.620241 | 7.4:-93380718 | MS.gene97455:CDS |
| GTTCATGCTGGTGACCGTGC+AGG | 0.625656 | 7.4:-93383149 | MS.gene97455:intron |
| GTTCTTCAACAGCATTAGCA+GGG | 0.626050 | 7.4:+93380770 | None:intergenic |
| TAGCATCACACTTGTAAGTG+AGG | 0.628131 | 7.4:+93383301 | None:intergenic |
| TATTTCGTCTCACAGCTCAA+CGG | 0.632141 | 7.4:-93381492 | MS.gene97455:intron |
| TATAAAGCCACCTACCTGCA+CGG | 0.642251 | 7.4:+93383135 | None:intergenic |
| GTTACTGACAGACCTTCTCA+TGG | 0.642594 | 7.4:+93381400 | None:intergenic |
| GAACATCCGAAAATACAACT+AGG | 0.652850 | 7.4:+93383168 | None:intergenic |
| TAAGACAGACCACATGTCTG+AGG | 0.664215 | 7.4:+93381440 | None:intergenic |
| CCGAAAATACAACTAGGACA+AGG | 0.664542 | 7.4:+93383174 | None:intergenic |
| TTCGTACCTTAAGCAGAACA+GGG | 0.675043 | 7.4:+93381623 | None:intergenic |
| TGCATTCAGTAATGTCAGTG+AGG | 0.688986 | 7.4:-93382885 | MS.gene97455:intron |
| ACAAGAACGTCTCCTAAACG+AGG | 0.721995 | 7.4:+93382929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACCTAATAAGTTTAT+AGG | - | chr7.4:93381751-93381770 | MS.gene97455:intron | 15.0% |
| !! | AAAAATTGTTATGTTGAATT+TGG | - | chr7.4:93382845-93382864 | MS.gene97455:intron | 15.0% |
| !! | AAAATTGTTATGTTGAATTT+GGG | - | chr7.4:93382846-93382865 | MS.gene97455:intron | 15.0% |
| !! | CATCATAAGAAAAAAATATT+TGG | + | chr7.4:93384452-93384471 | None:intergenic | 15.0% |
| !! | TATGAATATAGAGTAATAAA+AGG | + | chr7.4:93383488-93383507 | None:intergenic | 15.0% |
| !! | TTAACAAAAATGTCTTTAAA+CGG | + | chr7.4:93381478-93381497 | None:intergenic | 15.0% |
| !!! | TAACTTTTTTAGAATAGAAA+TGG | + | chr7.4:93380843-93380862 | None:intergenic | 15.0% |
| !!! | TATAAATATTGAGCTTTTTA+CGG | - | chr7.4:93383739-93383758 | MS.gene97455:CDS | 15.0% |
| !! | AAACAAAATAACAATAACAC+GGG | + | chr7.4:93382953-93382972 | None:intergenic | 20.0% |
| !! | AAATTGTTATGTTGAATTTG+GGG | - | chr7.4:93382847-93382866 | MS.gene97455:intron | 20.0% |
| !! | AATAAGTTTATAGGTGTTTA+TGG | - | chr7.4:93381760-93381779 | MS.gene97455:intron | 20.0% |
| !! | AGTTCATATATCAAACTAAT+TGG | + | chr7.4:93383541-93383560 | None:intergenic | 20.0% |
| !! | CAAAAACACATAATTTAGAA+AGG | + | chr7.4:93380708-93380727 | None:intergenic | 20.0% |
| !! | CAATATATAATCAACTTTCA+AGG | + | chr7.4:93383072-93383091 | None:intergenic | 20.0% |
| !! | GAAACAAAATAACAATAACA+CGG | + | chr7.4:93382954-93382973 | None:intergenic | 20.0% |
| !! | TAAACACCTATAAACTTATT+AGG | + | chr7.4:93381760-93381779 | None:intergenic | 20.0% |
| !! | TAAACATCAACAAATTATAG+CGG | - | chr7.4:93383390-93383409 | MS.gene97455:intron | 20.0% |
| !! | TACTGATCATAATAAAAGAT+AGG | + | chr7.4:93382270-93382289 | None:intergenic | 20.0% |
| !! | TGATGATATTATCATATCAT+AGG | - | chr7.4:93382320-93382339 | MS.gene97455:intron | 20.0% |
| !! | TTATGTTTATTATCAAAGTG+TGG | - | chr7.4:93384285-93384304 | MS.gene97455:intron | 20.0% |
| !!! | ACTAGTTATTAGTATTGAAA+AGG | - | chr7.4:93382508-93382527 | MS.gene97455:intron | 20.0% |
| !!! | ATAAATATTGAGCTTTTTAC+GGG | - | chr7.4:93383740-93383759 | MS.gene97455:CDS | 20.0% |
| !!! | ATTCTCCATATATTTTTTCT+TGG | - | chr7.4:93382218-93382237 | MS.gene97455:intron | 20.0% |
| !!! | TGAAAGTTGATTATATATTG+AGG | - | chr7.4:93383072-93383091 | MS.gene97455:intron | 20.0% |
| ! | AAGGTACGAATTTAAACATA+AGG | - | chr7.4:93383672-93383691 | MS.gene97455:intron | 25.0% |
| ! | ACATGCATGAAACTTATTTA+GGG | - | chr7.4:93384366-93384385 | MS.gene97455:intron | 25.0% |
| ! | AGATAGATAAAAAGGAAGTA+AGG | + | chr7.4:93383907-93383926 | None:intergenic | 25.0% |
| ! | ATTTGTGACTCATAATTAGT+AGG | + | chr7.4:93383942-93383961 | None:intergenic | 25.0% |
| ! | CAAACTGAATTTCATTCAAA+CGG | - | chr7.4:93382821-93382840 | MS.gene97455:intron | 25.0% |
| ! | CTATTATATACTTCTTGGAT+TGG | - | chr7.4:93381531-93381550 | MS.gene97455:intron | 25.0% |
| ! | GACTTCCAAGAAAAAATATA+TGG | + | chr7.4:93382226-93382245 | None:intergenic | 25.0% |
| ! | GATTATATATTGAGGACTAT+TGG | - | chr7.4:93383080-93383099 | MS.gene97455:intron | 25.0% |
| ! | TATAGATTCAAGAAGATAAC+TGG | - | chr7.4:93382064-93382083 | MS.gene97455:intron | 25.0% |
| ! | TATCTGCAATGAAAATTGTT+TGG | - | chr7.4:93381387-93381406 | MS.gene97455:intron | 25.0% |
| ! | TCTGAATATAATAATGAGCA+TGG | + | chr7.4:93382672-93382691 | None:intergenic | 25.0% |
| ! | TGATATTATCATATCATAGG+TGG | - | chr7.4:93382323-93382342 | MS.gene97455:intron | 25.0% |
| ! | TGGTACTATTATATACTTCT+TGG | - | chr7.4:93381526-93381545 | MS.gene97455:intron | 25.0% |
| ! | TTATTCTTATGTACTCTGTT+TGG | - | chr7.4:93380784-93380803 | MS.gene97455:CDS | 25.0% |
| ! | TTTCTGTGAGATAGATAAAA+AGG | + | chr7.4:93383915-93383934 | None:intergenic | 25.0% |
| !! | GTTATTAGTATTGAAAAGGT+TGG | - | chr7.4:93382512-93382531 | MS.gene97455:intron | 25.0% |
| !! | TAATGTTCGTTTTCATTAAG+CGG | - | chr7.4:93382568-93382587 | MS.gene97455:intron | 25.0% |
| !! | TCTTTAGGTTCTAATTTATG+AGG | - | chr7.4:93381726-93381745 | MS.gene97455:intron | 25.0% |
| !!! | CATAAGGATTCTAAAGATTT+TGG | - | chr7.4:93383688-93383707 | MS.gene97455:intron | 25.0% |
| !!! | CTTCATATTGTTTCTAATAC+AGG | - | chr7.4:93381498-93381517 | MS.gene97455:intron | 25.0% |
| !!! | GGTTTTATTATTTGCTAAAG+AGG | - | chr7.4:93381242-93381261 | MS.gene97455:CDS | 25.0% |
| !!! | TTTTCATTTTGAAGCCTTAA+TGG | - | chr7.4:93383121-93383140 | MS.gene97455:intron | 25.0% |
| AAAAACTAGCATCTCAACAT+TGG | + | chr7.4:93381268-93381287 | None:intergenic | 30.0% | |
| AAGTCAACATAAAGCTAGTT+TGG | + | chr7.4:93381876-93381895 | None:intergenic | 30.0% | |
| ACTTTCATTTCTTGTTCTGT+TGG | - | chr7.4:93384079-93384098 | MS.gene97455:intron | 30.0% | |
| ATAAAACCCCATTCAGAATT+AGG | + | chr7.4:93381230-93381249 | None:intergenic | 30.0% | |
| ATGAGCTTAAATCTATTCAC+TGG | - | chr7.4:93383171-93383190 | MS.gene97455:CDS | 30.0% | |
| ATGGCATAAGCACTTAATTA+AGG | + | chr7.4:93381030-93381049 | None:intergenic | 30.0% | |
| CATCAGACAAACATGATAAA+TGG | + | chr7.4:93382305-93382324 | None:intergenic | 30.0% | |
| CTCAAATAAGTCAATCCAAA+CGG | - | chr7.4:93381002-93381021 | MS.gene97455:intron | 30.0% | |
| CTCAGTTGAAATAAGTCTTT+AGG | - | chr7.4:93381711-93381730 | MS.gene97455:intron | 30.0% | |
| CTTTCAAGGATACATTTGAA+TGG | + | chr7.4:93383058-93383077 | None:intergenic | 30.0% | |
| CTTTCATTTCTTGTTCTGTT+GGG | - | chr7.4:93384080-93384099 | MS.gene97455:intron | 30.0% | |
| GACATGCATGAAACTTATTT+AGG | - | chr7.4:93384365-93384384 | MS.gene97455:intron | 30.0% | |
| GGTCTCACATAAAAAACTTT+AGG | + | chr7.4:93383467-93383486 | None:intergenic | 30.0% | |
| TAAAACCCCATTCAGAATTA+GGG | + | chr7.4:93381229-93381248 | None:intergenic | 30.0% | |
| TAGAACTAATTATGCTTTCC+AGG | - | chr7.4:93383981-93384000 | MS.gene97455:intron | 30.0% | |
| TGGATTATCTTCCAGATTAT+GGG | - | chr7.4:93381683-93381702 | MS.gene97455:intron | 30.0% | |
| TGGCATAAGCACTTAATTAA+GGG | + | chr7.4:93381029-93381048 | None:intergenic | 30.0% | |
| TTCAGTTTGACAAGAAACTA+TGG | + | chr7.4:93382810-93382829 | None:intergenic | 30.0% | |
| TTGGATTATCTTCCAGATTA+TGG | - | chr7.4:93381682-93381701 | MS.gene97455:intron | 30.0% | |
| TTTACTAAAAACTCCTGCAA+TGG | + | chr7.4:93382976-93382995 | None:intergenic | 30.0% | |
| ! | AGCCATCTTTTTATGTATCA+GGG | - | chr7.4:93382634-93382653 | MS.gene97455:intron | 30.0% |
| ! | GATCGATATTTAGAAAGCAT+TGG | - | chr7.4:93381608-93381627 | MS.gene97455:intron | 30.0% |
| ! | TATCTTCCAATGTTTGTTAC+AGG | - | chr7.4:93383584-93383603 | MS.gene97455:intron | 30.0% |
| ! | TGCTAGCATAAACATTTTTG+CGG | + | chr7.4:93380973-93380992 | None:intergenic | 30.0% |
| ! | TTATAGCGGAAATAGTTTAG+AGG | - | chr7.4:93383404-93383423 | MS.gene97455:intron | 30.0% |
| ! | TTATGCATTTTGCAACACTT+TGG | - | chr7.4:93382442-93382461 | MS.gene97455:intron | 30.0% |
| !! | GTGTTTTTGATGATTGTCTA+TGG | - | chr7.4:93380719-93380738 | MS.gene97455:CDS | 30.0% |
| !!! | CTGTTTTTTATAAGCTATCC+AGG | - | chr7.4:93381108-93381127 | MS.gene97455:intron | 30.0% |
| !!! | TCCTTTTTTTGGATTTTCTG+TGG | - | chr7.4:93383611-93383630 | MS.gene97455:intron | 30.0% |
| !!! | TGTTATTTTGTTTCCATTGC+AGG | - | chr7.4:93382960-93382979 | MS.gene97455:intron | 30.0% |
| !!! | TTACAGGCATTTCCTTTTTT+TGG | - | chr7.4:93383600-93383619 | MS.gene97455:intron | 30.0% |
| AACAGACCCTAATTCTGAAT+GGG | - | chr7.4:93381220-93381239 | MS.gene97455:intron | 35.0% | |
| ACAGGGCAGAAATAACATAA+CGG | + | chr7.4:93381437-93381456 | None:intergenic | 35.0% | |
| AGCAGTTCCCATAAAGAAAA+TGG | + | chr7.4:93381336-93381355 | None:intergenic | 35.0% | |
| AGCTAAGGAAGTTTAAACTC+AGG | - | chr7.4:93383342-93383361 | MS.gene97455:intron | 35.0% | |
| AGCTCTGTAAATGACCATTA+AGG | + | chr7.4:93383138-93383157 | None:intergenic | 35.0% | |
| ATAGCAAAGGAAATGTGTCT+GGG | - | chr7.4:93384577-93384596 | MS.gene97455:CDS | 35.0% | |
| ATTCAGAATTAGGGTCTGTT+AGG | + | chr7.4:93381220-93381239 | None:intergenic | 35.0% | |
| ATTTGGTCCATTACAGACTA+AGG | + | chr7.4:93384435-93384454 | None:intergenic | 35.0% | |
| CAAAAGATGAGAAGAAGCTA+AGG | - | chr7.4:93383327-93383346 | MS.gene97455:intron | 35.0% | |
| CATAAGCAGTTGAGACTAAT+TGG | + | chr7.4:93381170-93381189 | None:intergenic | 35.0% | |
| GAAATGCCTGTAACAAACAT+TGG | + | chr7.4:93383593-93383612 | None:intergenic | 35.0% | |
| GAACATCCGAAAATACAACT+AGG | + | chr7.4:93382117-93382136 | None:intergenic | 35.0% | |
| GAAGATAATCCAAACTAGTG+GGG | + | chr7.4:93381675-93381694 | None:intergenic | 35.0% | |
| GACATTACTGAATGCATACA+AGG | + | chr7.4:93382393-93382412 | None:intergenic | 35.0% | |
| GAGATATCCTTAGTCTGTAA+TGG | - | chr7.4:93384425-93384444 | MS.gene97455:intron | 35.0% | |
| GCCACAGAAAATCCAAAAAA+AGG | + | chr7.4:93383615-93383634 | None:intergenic | 35.0% | |
| GCTTAAATCTATTCACTGGT+CGG | - | chr7.4:93383175-93383194 | MS.gene97455:CDS | 35.0% | |
| GGAAGATAATCCAAACTAGT+GGG | + | chr7.4:93381676-93381695 | None:intergenic | 35.0% | |
| TAAACAATACCCCACTAGTT+TGG | - | chr7.4:93381663-93381682 | MS.gene97455:CDS | 35.0% | |
| TAACAGACCCTAATTCTGAA+TGG | - | chr7.4:93381219-93381238 | MS.gene97455:intron | 35.0% | |
| TCTTTATGGGAACTGCTTAT+GGG | - | chr7.4:93381339-93381358 | MS.gene97455:intron | 35.0% | |
| TGCCCTGATACATAAAAAGA+TGG | + | chr7.4:93382639-93382658 | None:intergenic | 35.0% | |
| TGGAAGATAATCCAAACTAG+TGG | + | chr7.4:93381677-93381696 | None:intergenic | 35.0% | |
| TGGTAAGTGAGTATCTTTGA+TGG | - | chr7.4:93381576-93381595 | MS.gene97455:intron | 35.0% | |
| TTACTCTTCATCAATCCAAG+AGG | + | chr7.4:93383373-93383392 | None:intergenic | 35.0% | |
| TTCTTTATGGGAACTGCTTA+TGG | - | chr7.4:93381338-93381357 | MS.gene97455:intron | 35.0% | |
| TTTAGAAAGGACTGTGATGT+TGG | + | chr7.4:93380695-93380714 | None:intergenic | 35.0% | |
| ! | ACGTGTGTGCATAAGTTTTT+AGG | + | chr7.4:93382186-93382205 | None:intergenic | 35.0% |
| ! | AGACTAATTGGCAAAGCTTT+TGG | + | chr7.4:93381158-93381177 | None:intergenic | 35.0% |
| ! | CCTTGTCCTAGTTGTATTTT+CGG | - | chr7.4:93382108-93382127 | MS.gene97455:CDS | 35.0% |
| ! | CTTATGGGAAGTATAAGAGA+TGG | - | chr7.4:93381354-93381373 | MS.gene97455:intron | 35.0% |
| ! | GAGCCATCTTTTTATGTATC+AGG | - | chr7.4:93382633-93382652 | MS.gene97455:intron | 35.0% |
| ! | GATGTGGAAGCAAATTTTCT+TGG | - | chr7.4:93381556-93381575 | MS.gene97455:intron | 35.0% |
| ! | TGTGGCTTTTGCTAAAATCA+CGG | - | chr7.4:93384303-93384322 | MS.gene97455:intron | 35.0% |
| ! | TGTTTCTAATACAGGCGAAA+TGG | - | chr7.4:93381506-93381525 | MS.gene97455:intron | 35.0% |
| ! | TTTTATAAGCTATCCAGGAG+AGG | - | chr7.4:93381113-93381132 | MS.gene97455:intron | 35.0% |
| !! | ATCATGGGCCATTTTCTTTA+TGG | - | chr7.4:93381325-93381344 | MS.gene97455:intron | 35.0% |
| !! | ATTATGCTTTCCAGGTTGAT+TGG | - | chr7.4:93383989-93384008 | MS.gene97455:intron | 35.0% |
| !! | CTTATTTTCATTACCTCTCC+TGG | + | chr7.4:93381129-93381148 | None:intergenic | 35.0% |
| !! | TCATGGGCCATTTTCTTTAT+GGG | - | chr7.4:93381326-93381345 | MS.gene97455:intron | 35.0% |
| !!! | CTGTTGGGATTCTTTTTTTC+TGG | - | chr7.4:93384095-93384114 | MS.gene97455:intron | 35.0% |
| AAACTCACTGCAAGTGTTTC+AGG | - | chr7.4:93382611-93382630 | MS.gene97455:intron | 40.0% | |
| AAATACAACTAGGACAAGGC+CGG | + | chr7.4:93382107-93382126 | None:intergenic | 40.0% | |
| AAGTGACGCAAGTGCATAAA+AGG | + | chr7.4:93382900-93382919 | None:intergenic | 40.0% | |
| ACAGACCCTAATTCTGAATG+GGG | - | chr7.4:93381221-93381240 | MS.gene97455:intron | 40.0% | |
| ACTGAGAAGATCCCATAATC+TGG | + | chr7.4:93381697-93381716 | None:intergenic | 40.0% | |
| AGAAAATGGCCCATGATTGA+AGG | + | chr7.4:93381322-93381341 | None:intergenic | 40.0% | |
| AGTAGTACATCCAATCAACC+TGG | + | chr7.4:93384002-93384021 | None:intergenic | 40.0% | |
| AGTTCAGCAACTCATAGCAA+AGG | - | chr7.4:93384564-93384583 | MS.gene97455:CDS | 40.0% | |
| ATGGCAATGTTAGGTCTCTT+TGG | - | chr7.4:93383018-93383037 | MS.gene97455:intron | 40.0% | |
| ATTCGTACCTTAAGCAGAAC+AGG | + | chr7.4:93383663-93383682 | None:intergenic | 40.0% | |
| CACCTTATGAACAGTTGTGA+AGG | - | chr7.4:93381946-93381965 | MS.gene97455:intron | 40.0% | |
| CACTTAATTAAGGGTCCGTT+TGG | + | chr7.4:93381020-93381039 | None:intergenic | 40.0% | |
| CATAGCAAAGGAAATGTGTC+TGG | - | chr7.4:93384576-93384595 | MS.gene97455:CDS | 40.0% | |
| CCGAAAATACAACTAGGACA+AGG | + | chr7.4:93382111-93382130 | None:intergenic | 40.0% | |
| CTACAGAAGAAAGCCTCTAA+AGG | - | chr7.4:93380754-93380773 | MS.gene97455:CDS | 40.0% | |
| GAAAATGGCCCATGATTGAA+GGG | + | chr7.4:93381321-93381340 | None:intergenic | 40.0% | |
| GAATAAGCAAGCACCTTTAG+AGG | + | chr7.4:93380770-93380789 | None:intergenic | 40.0% | |
| GGTGTAATTGTTTGCATAGC+CGG | - | chr7.4:93382085-93382104 | MS.gene97455:intron | 40.0% | |
| GGTTGATTGGATGTACTACT+TGG | - | chr7.4:93384002-93384021 | MS.gene97455:intron | 40.0% | |
| GTAAATGCAAGCCCATAAGT+AGG | + | chr7.4:93382784-93382803 | None:intergenic | 40.0% | |
| GTAGCAAACCCTTCAATCAT+GGG | - | chr7.4:93381310-93381329 | MS.gene97455:intron | 40.0% | |
| GTCTGAATAGACGATGAGTT+TGG | + | chr7.4:93384348-93384367 | None:intergenic | 40.0% | |
| GTTCTTCAACAGCATTAGCA+GGG | + | chr7.4:93384515-93384534 | None:intergenic | 40.0% | |
| TAAACTCAGGATAAGCCTCT+TGG | - | chr7.4:93383355-93383374 | MS.gene97455:intron | 40.0% | |
| TAGCATCACACTTGTAAGTG+AGG | + | chr7.4:93381984-93382003 | None:intergenic | 40.0% | |
| TATTTCGTCTCACAGCTCAA+CGG | - | chr7.4:93383790-93383809 | MS.gene97455:intron | 40.0% | |
| TCAGCATTGTCAATCGTGTT+GGG | - | chr7.4:93384259-93384278 | MS.gene97455:intron | 40.0% | |
| TGAATAGACGATGAGTTTGG+TGG | + | chr7.4:93384345-93384364 | None:intergenic | 40.0% | |
| TGACAGTGAGAGGAAAAACA+GGG | + | chr7.4:93381454-93381473 | None:intergenic | 40.0% | |
| TGCATTCAGTAATGTCAGTG+AGG | - | chr7.4:93382397-93382416 | MS.gene97455:intron | 40.0% | |
| TGCCTTCACAACTGTTCATA+AGG | + | chr7.4:93381951-93381970 | None:intergenic | 40.0% | |
| TGTAGCAAACCCTTCAATCA+TGG | - | chr7.4:93381309-93381328 | MS.gene97455:intron | 40.0% | |
| TTCGTACCTTAAGCAGAACA+GGG | + | chr7.4:93383662-93383681 | None:intergenic | 40.0% | |
| TTGACAGTGAGAGGAAAAAC+AGG | + | chr7.4:93381455-93381474 | None:intergenic | 40.0% | |
| TTTAAACGGTTGACAGTGAG+AGG | + | chr7.4:93381464-93381483 | None:intergenic | 40.0% | |
| ! | GTATTTTCGGATGTTCATGC+TGG | - | chr7.4:93382121-93382140 | MS.gene97455:CDS | 40.0% |
| ! | TTTGCTATGAGTTGCTGAAC+TGG | + | chr7.4:93384565-93384584 | None:intergenic | 40.0% |
| !! | ACAGAAGTGTTTGTGCTGTA+TGG | + | chr7.4:93381049-93381068 | None:intergenic | 40.0% |
| !! | ACTTCTTGGATTGGTTGATG+TGG | - | chr7.4:93381540-93381559 | MS.gene97455:intron | 40.0% |
| AAATCTATTCACTGGTCGGC+TGG | - | chr7.4:93383179-93383198 | MS.gene97455:CDS | 45.0% | |
| AATCTATTCACTGGTCGGCT+GGG | - | chr7.4:93383180-93383199 | MS.gene97455:CDS | 45.0% | |
| ACAAGAACGTCTCCTAAACG+AGG | + | chr7.4:93382356-93382375 | None:intergenic | 45.0% | |
| AGAACCTGTTGCAATCAGAC+AGG | - | chr7.4:93384530-93384549 | MS.gene97455:CDS | 45.0% | |
| ATTGCCTGTGGCCTACTTAT+GGG | - | chr7.4:93382770-93382789 | MS.gene97455:intron | 45.0% | |
| CAGCATTGTCAATCGTGTTG+GGG | - | chr7.4:93384260-93384279 | MS.gene97455:intron | 45.0% | |
| CATCTTCGCTTACCATGAGA+AGG | - | chr7.4:93383870-93383889 | MS.gene97455:intron | 45.0% | |
| CTCAGCATTGTCAATCGTGT+TGG | - | chr7.4:93384258-93384277 | MS.gene97455:intron | 45.0% | |
| GAAGAGCTCATGGCAATGTT+AGG | - | chr7.4:93383009-93383028 | MS.gene97455:intron | 45.0% | |
| GATGTTTCGTCGTATTGCAG+AGG | - | chr7.4:93384468-93384487 | MS.gene97455:intron | 45.0% | |
| GCAATGTTAGGTCTCTTTGG+TGG | - | chr7.4:93383021-93383040 | MS.gene97455:intron | 45.0% | |
| GGTGGAAGTAATCCTCGTTT+AGG | - | chr7.4:93382341-93382360 | MS.gene97455:intron | 45.0% | |
| GGTTCTTCAACAGCATTAGC+AGG | + | chr7.4:93384516-93384535 | None:intergenic | 45.0% | |
| GTTACTGACAGACCTTCTCA+TGG | + | chr7.4:93383885-93383904 | None:intergenic | 45.0% | |
| TAAGACAGACCACATGTCTG+AGG | + | chr7.4:93383845-93383864 | None:intergenic | 45.0% | |
| TATAAAGCCACCTACCTGCA+CGG | + | chr7.4:93382150-93382169 | None:intergenic | 45.0% | |
| TCATCCTGTCTGATTGCAAC+AGG | + | chr7.4:93384537-93384556 | None:intergenic | 45.0% | |
| TCTAGTCCCTGTTCTGCTTA+AGG | - | chr7.4:93383653-93383672 | MS.gene97455:intron | 45.0% | |
| TGCTGATAGAGAAGAGCTCA+TGG | - | chr7.4:93382999-93383018 | MS.gene97455:intron | 45.0% | |
| TGGATGTACTACTTGGCGTT+TGG | - | chr7.4:93384009-93384028 | MS.gene97455:intron | 45.0% | |
| TGTCTTTCCATGATTGCCTG+TGG | - | chr7.4:93382758-93382777 | MS.gene97455:intron | 45.0% | |
| TGTTGCAATCAGACAGGATG+AGG | - | chr7.4:93384536-93384555 | MS.gene97455:CDS | 45.0% | |
| ! | GGCTTTTGCTAAAATCACGG+TGG | - | chr7.4:93384306-93384325 | MS.gene97455:intron | 45.0% |
| ! | TCGTCGTATTGCAGAGGTTT+TGG | - | chr7.4:93384474-93384493 | MS.gene97455:intron | 45.0% |
| AAGCAGCATGACGCATGGAA+TGG | + | chr7.4:93382020-93382039 | None:intergenic | 50.0% | |
| AAGTAGGCCACAGGCAATCA+TGG | + | chr7.4:93382768-93382787 | None:intergenic | 50.0% | |
| ATCTATTCACTGGTCGGCTG+GGG | - | chr7.4:93383181-93383200 | MS.gene97455:CDS | 50.0% | |
| CATGTAAGCAGCATGACGCA+TGG | + | chr7.4:93382025-93382044 | None:intergenic | 50.0% | |
| CTCTTCTGACCTCAGACATG+TGG | - | chr7.4:93383833-93383852 | MS.gene97455:intron | 50.0% | |
| GATTGCCTGTGGCCTACTTA+TGG | - | chr7.4:93382769-93382788 | MS.gene97455:intron | 50.0% | |
| GTCTGGGAGCTCAAAAACCT+GGG | - | chr7.4:93384593-93384612 | MS.gene97455:CDS | 50.0% | |
| TGTCTGGGAGCTCAAAAACC+TGG | - | chr7.4:93384592-93384611 | MS.gene97455:CDS | 50.0% | |
| ! | CATGCGTCATGCTGCTTACA+TGG | - | chr7.4:93382023-93382042 | MS.gene97455:intron | 50.0% |
| ! | GGAGACGTTCTTGTTATCGC+TGG | - | chr7.4:93382362-93382381 | MS.gene97455:intron | 50.0% |
| ! | GTGTGATGCTACTTGACTGC+TGG | - | chr7.4:93381993-93382012 | MS.gene97455:intron | 50.0% |
| !! | GCGTTTGGTGCTGTTGTCAT+TGG | - | chr7.4:93384024-93384043 | MS.gene97455:intron | 50.0% |
| !!! | TTGCAGAGGTTTTGGAGACG+AGG | - | chr7.4:93384482-93384501 | MS.gene97455:intron | 50.0% |
| CAAGCCCATAAGTAGGCCAC+AGG | + | chr7.4:93382777-93382796 | None:intergenic | 55.0% | |
| ATGCTGGTGACCGTGCAGGT+AGG | - | chr7.4:93382137-93382156 | MS.gene97455:intron | 60.0% | |
| GTTCATGCTGGTGACCGTGC+AGG | - | chr7.4:93382133-93382152 | MS.gene97455:intron | 60.0% | |
| CTGGTGACCGTGCAGGTAGG+TGG | - | chr7.4:93382140-93382159 | MS.gene97455:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93380681 | 93384623 | 93380681 | ID=MS.gene97455 |
| chr7.4 | mRNA | 93380681 | 93384623 | 93380681 | ID=MS.gene97455.t1;Parent=MS.gene97455 |
| chr7.4 | exon | 93384529 | 93384623 | 93384529 | ID=MS.gene97455.t1.exon1;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93384529 | 93384623 | 93384529 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93383727 | 93383784 | 93383727 | ID=MS.gene97455.t1.exon2;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93383727 | 93383784 | 93383727 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93383150 | 93383344 | 93383150 | ID=MS.gene97455.t1.exon3;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93383150 | 93383344 | 93383150 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93382886 | 93382962 | 93382886 | ID=MS.gene97455.t1.exon4;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93382886 | 93382962 | 93382886 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93382240 | 93382322 | 93382240 | ID=MS.gene97455.t1.exon5;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93382240 | 93382322 | 93382240 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93382099 | 93382150 | 93382099 | ID=MS.gene97455.t1.exon6;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93382099 | 93382150 | 93382099 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93381630 | 93381698 | 93381630 | ID=MS.gene97455.t1.exon7;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93381630 | 93381698 | 93381630 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93381413 | 93381499 | 93381413 | ID=MS.gene97455.t1.exon8;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93381413 | 93381499 | 93381413 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93381240 | 93381301 | 93381240 | ID=MS.gene97455.t1.exon9;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93381240 | 93381301 | 93381240 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| chr7.4 | exon | 93380681 | 93380816 | 93380681 | ID=MS.gene97455.t1.exon10;Parent=MS.gene97455.t1 |
| chr7.4 | CDS | 93380681 | 93380816 | 93380681 | ID=cds.MS.gene97455.t1;Parent=MS.gene97455.t1 |
| Gene Sequence |
| Protein sequence |
