AlfalfaGEDB | MS.gene97467

M. sativa cultivar XinJiangDaYe / MS.gene97467

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97467.t1	XP_013441979.1	94.7	150	8	0	1	150	1	150	2.70E-78	301.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97467.t1	O22150	48.7	154	69	4	1	147	1	151	3.1e-35	149.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97467.t1	G7J151	94.7	150	8	0	1	150	1	150	1.9e-78	301.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049396	MS.gene97467	0.825031	5.85E-54	-1.69E-46
MS.gene050502	MS.gene97467	0.827506	1.51E-54	-1.69E-46
MS.gene051941	MS.gene97467	0.803792	2.94E-49	-1.69E-46
MS.gene052346	MS.gene97467	0.836946	6.94E-57	-1.69E-46
MS.gene052414	MS.gene97467	0.852443	4.60E-61	-1.69E-46
MS.gene053169	MS.gene97467	0.809247	2.08E-50	-1.69E-46
MS.gene054486	MS.gene97467	0.802436	5.61E-49	-1.69E-46
MS.gene055369	MS.gene97467	0.835197	1.93E-56	-1.69E-46
MS.gene055741	MS.gene97467	0.825459	4.63E-54	-1.69E-46
MS.gene055744	MS.gene97467	0.828273	9.85E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97467.t1	MTR_0388s0020	94.667	150	8	0	1	150	1	150	3.56e-106	299
MS.gene97467.t1	MTR_4g025830	53.289	152	57	4	7	147	3	151	2.56e-47	150
MS.gene97467.t1	MTR_7g118010	60.294	68	26	1	74	141	22	88	7.18e-24	89.7
MS.gene97467.t1	MTR_3g092220	50.000	74	36	1	74	147	32	104	2.11e-20	80.9
MS.gene97467.t1	MTR_8g026730	55.882	68	29	1	74	141	26	92	4.55e-20	80.1
MS.gene97467.t1	MTR_3g084250	49.398	83	37	3	61	141	10	89	1.08e-18	75.9
MS.gene97467.t1	MTR_4g072240	44.706	85	42	3	57	139	7	88	1.08e-17	73.6
MS.gene97467.t1	MTR_4g072500	42.045	88	46	3	56	141	5	89	2.34e-17	72.4
MS.gene97467.t1	MTR_4g072570	45.783	83	40	3	61	141	10	89	2.61e-17	72.4
MS.gene97467.t1	MTR_4g072300	44.706	85	42	3	57	139	7	88	3.12e-17	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97467.t1	AT2G45210	48.701	154	69	4	1	147	1	151	1.12e-43	142
MS.gene97467.t1	AT3G60690	40.506	158	81	5	1	145	1	158	3.47e-36	123
MS.gene97467.t1	AT4G22620	40.816	147	83	3	1	143	1	147	6.95e-32	111
MS.gene97467.t1	AT4G12410	38.312	154	74	4	1	143	1	144	1.94e-29	105
MS.gene97467.t1	AT2G46690	48.052	77	40	0	74	150	23	99	1.39e-21	84.3
MS.gene97467.t1	AT3G61900	54.412	68	31	0	74	141	29	96	7.40e-21	82.8
MS.gene97467.t1	AT4G00880	50.000	74	36	1	75	148	28	100	1.65e-19	79.0
MS.gene97467.t1	AT5G53590	41.772	79	44	1	74	150	45	123	1.92e-17	74.3
MS.gene97467.t1	AT4G34800	55.738	61	26	1	75	134	21	81	2.97e-17	72.4
MS.gene97467.t1	AT3G03820	46.667	75	39	1	68	141	20	94	5.85e-17	71.6

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Find 47 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTTGAAGAGGAGTA+TGG	0.344907	7.3:-60220825	MS.gene97467:CDS
AAGATCCACGGATTTAAGCT+CGG	0.560574	7.3:-60221149	MS.gene97467:CDS
AGAAAGAGGAAGAGATAAAT+AGG	0.176068	7.3:-60220899	MS.gene97467:CDS
AGATCCACGGATTTAAGCTC+GGG	0.508966	7.3:-60221148	MS.gene97467:CDS
AGCTCGGGAAGCGTCTCGTC+TGG	0.312851	7.3:-60221133	MS.gene97467:CDS
AGGTCAAGTTATACTCGGTT+AGG	0.455077	7.3:-60220975	MS.gene97467:CDS
AGTTTGAACGGATCAAGACC+TGG	0.576336	7.3:-60220758	MS.gene97467:CDS
ATCAAGACCTGGATTGCATC+AGG	0.485980	7.3:-60220747	MS.gene97467:CDS
ATGGGGCCGCAAGCTAACGA+CGG	0.684381	7.3:-60221018	MS.gene97467:CDS
ATTGCTTAAAGATGTTGAAG+AGG	0.557241	7.3:-60220832	MS.gene97467:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGAGGAAGAGATAAAT+AGG	-	chr7.3:60220981-60221000	MS.gene97467:CDS	30.0%
ATTGCTTAAAGATGTTGAAG+AGG	-	chr7.3:60221048-60221067	MS.gene97467:CDS	30.0%
GAAAGAGGAAGAGATAAATA+GGG	-	chr7.3:60220982-60221001	MS.gene97467:CDS	30.0%
AAAGATGTTGAAGAGGAGTA+TGG	-	chr7.3:60221055-60221074	MS.gene97467:CDS	35.0%
ATTTGAGAAGTTTCATTGCC+GGG	+	chr7.3:60220844-60220863	None:intergenic	35.0%
CATTTGAGAAGTTTCATTGC+CGG	+	chr7.3:60220845-60220864	None:intergenic	35.0%
GCAATGAAACTTCTCAAATG+GGG	-	chr7.3:60220845-60220864	MS.gene97467:CDS	35.0%
GGAAGAGATAAATAGGGTTA+TGG	-	chr7.3:60220988-60221007	MS.gene97467:CDS	35.0%
GGCAATGAAACTTCTCAAAT+GGG	-	chr7.3:60220844-60220863	MS.gene97467:CDS	35.0%
TACGATACCATGTAGGTTTA+CGG	-	chr7.3:60221099-60221118	MS.gene97467:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	60220725	60221177	60220725	ID=MS.gene97467
chr7.3	mRNA	60220725	60221177	60220725	ID=MS.gene97467.t1;Parent=MS.gene97467
chr7.3	exon	60220725	60221177	60220725	ID=MS.gene97467.t1.exon1;Parent=MS.gene97467.t1
chr7.3	CDS	60220725	60221177	60220725	ID=cds.MS.gene97467.t1;Parent=MS.gene97467.t1

Gene Sequence

>MS.gene97467

ATGGCAAAGATCCACGGATTTAAGCTCGGGAAGCGTCTCGTCTGGGTTTCTAGATTGGTGTTTAAAAAGACGCGGATTCGAACTGGATATCATCGCTTTGATTGTCCTGCTCAATCCCCGGCAATGAAACTTCTCAAATGGGGCCGCAAGCTAACGACGGATGCCATGAAGCTTTTCAACAGGTCAAGTTATACTCGGTTAGGATCCAGCCCGAAATTCAGCGTGCCAAAGGGACAAATGGTTGTGTATGTGGGACAGAAAGAGGAAGAGATAAATAGGGTTATGGTGCCAGTGATATACTTTAACCACCCATTGTTTAGTGAATTGCTTAAAGATGTTGAAGAGGAGTATGGTTTTAACCATCAAGGTGGGATTACGATACCATGTAGGTTTACGGAGTTTGAACGGATCAAGACCTGGATTGCATCAGGTTCCAGCAATTGGACCAGTTGA

Protein sequence

>MS.gene97467.t1

MAKIHGFKLGKRLVWVSRLVFKKTRIRTGYHRFDCPAQSPAMKLLKWGRKLTTDAMKLFNRSSYTRLGSSPKFSVPKGQMVVYVGQKEEEINRVMVPVIYFNHPLFSELLKDVEEEYGFNHQGGITIPCRFTEFERIKTWIASGSSNWTS