AlfalfaGEDB | MS.gene98735

M. sativa cultivar XinJiangDaYe / MS.gene98735

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98735.t1	XP_013465454.1	96.4	444	16	0	1	444	9	452	1.00E-250	875.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98735.t1	Q9SZF7	51.1	405	166	9	59	444	139	530	4.6e-111	402.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98735.t1	A0A072VBU1	96.4	444	16	0	1	444	9	452	7.3e-251	875.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene98735.t1	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene98735	0.81977	9.75E-53	-1.69E-46
MS.gene049350	MS.gene98735	0.838965	2.10E-57	-1.69E-46
MS.gene049711	MS.gene98735	0.829352	5.40E-55	-1.69E-46
MS.gene050901	MS.gene98735	0.808863	2.51E-50	-1.69E-46
MS.gene051018	MS.gene98735	0.808163	3.54E-50	-1.69E-46
MS.gene051719	MS.gene98735	0.838333	3.06E-57	-1.69E-46
MS.gene051720	MS.gene98735	0.832993	6.88E-56	-1.69E-46
MS.gene052000	MS.gene98735	0.926789	2.89E-91	-1.69E-46
MS.gene052516	MS.gene98735	0.819265	1.27E-52	-1.69E-46
MS.gene053144	MS.gene98735	0.819455	1.15E-52	-1.69E-46

Showing 1 to 10 of 24 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98735.t1	MTR_2g099110	97.072	444	13	0	1	444	9	452	0.0	904
MS.gene98735.t1	MTR_5g015490	54.774	398	153	7	60	444	108	491	2.99e-148	431
MS.gene98735.t1	MTR_4g097080	55.499	391	151	8	62	444	129	504	1.05e-146	427
MS.gene98735.t1	MTR_2g089100	28.169	426	250	9	54	444	40	444	2.03e-51	180
MS.gene98735.t1	MTR_1g029420	29.306	389	245	8	65	443	224	592	9.25e-51	181
MS.gene98735.t1	MTR_4g095500	30.374	428	234	12	65	444	58	469	1.91e-47	169
MS.gene98735.t1	MTR_2g082090	29.381	388	244	8	65	442	211	578	4.83e-46	168
MS.gene98735.t1	MTR_3g089055	28.021	389	250	8	65	443	202	570	1.48e-45	166
MS.gene98735.t1	MTR_3g089055	28.021	389	250	8	65	443	197	565	1.51e-45	166
MS.gene98735.t1	MTR_5g094450	28.608	395	244	10	65	443	160	532	1.46e-42	157

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98735.t1	AT4G37650	51.111	405	166	9	59	444	139	530	4.25e-141	414
MS.gene98735.t1	AT3G49950	30.976	410	236	12	59	444	23	409	1.68e-56	192
MS.gene98735.t1	AT5G48150	28.900	391	241	9	67	443	123	490	3.82e-47	169
MS.gene98735.t1	AT5G48150	28.900	391	241	9	67	443	123	490	3.82e-47	169
MS.gene98735.t1	AT5G48150	28.900	391	241	9	67	443	123	490	3.82e-47	169
MS.gene98735.t1	AT5G48150	28.900	391	241	9	67	443	123	490	3.82e-47	169
MS.gene98735.t1	AT2G04890	28.756	386	242	9	66	443	53	413	3.96e-47	167
MS.gene98735.t1	AT1G50600	29.381	388	244	9	66	443	159	526	1.53e-44	163
MS.gene98735.t1	AT1G50600	29.381	388	244	9	66	443	230	597	3.77e-44	163
MS.gene98735.t1	AT1G50600	29.381	388	244	9	66	443	234	601	3.99e-44	163

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 64 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGGAGAAATTTGCT+AGG	0.565724	2.1:+5364446	MS.gene98735:CDS
AAAGAGAGAGAGGAAAACAA+TGG	0.597298	2.1:+5364893	MS.gene98735:CDS
AACAATGGTTTGAAAGGCTT+AGG	0.484650	2.1:+5364908	MS.gene98735:CDS
AACGAGTTATCTTCACCTTA+TGG	0.280967	2.1:+5364040	MS.gene98735:CDS
AAGAAGCATAATTAGGGTTT+TGG	0.264830	2.1:+5364813	MS.gene98735:CDS
AAGTAATGAGAGGTTAATGT+TGG	0.563161	2.1:+5364777	MS.gene98735:CDS
AATGTACCTCACATGGAAGG+AGG	0.650550	2.1:+5365050	MS.gene98735:CDS
ACAATTGTGAGCTTAAGGTG+AGG	0.710121	2.1:-5364376	None:intergenic
ACACTCTTTGAGAAGTTTGT+AGG	0.324051	2.1:-5363960	None:intergenic
ACATCATCACTAAATCCACA+AGG	0.718156	2.1:-5364943	None:intergenic

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAATGAGAGGTTAATGT+TGG	+	chr2.1:5364777-5364796	MS.gene98735:CDS	30.0%
ATTAACCTCTCATTACTTGT+TGG	-	chr2.1:5364775-5364794	None:intergenic	30.0%
CTAATAACGTTCAACTCAAA+AGG	-	chr2.1:5364484-5364503	None:intergenic	30.0%
GAATTAACGAAAGAGAGATT+AGG	+	chr2.1:5364523-5364542	MS.gene98735:CDS	30.0%
GTTAATACTCAAGTTTCAAG+AGG	+	chr2.1:5364195-5364214	MS.gene98735:CDS	30.0%
TATTGTGATAAAAGAGAGAG+AGG	+	chr2.1:5364883-5364902	MS.gene98735:CDS	30.0%
AAAGAGAGAGAGGAAAACAA+TGG	+	chr2.1:5364893-5364912	MS.gene98735:CDS	35.0%
AACAATGGTTTGAAAGGCTT+AGG	+	chr2.1:5364908-5364927	MS.gene98735:CDS	35.0%
AACGAGTTATCTTCACCTTA+TGG	+	chr2.1:5364040-5364059	MS.gene98735:CDS	35.0%
ACATCATCACTAAATCCACA+AGG	-	chr2.1:5364946-5364965	None:intergenic	35.0%

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	5363773	5365107	5363773	ID=MS.gene98735
chr2.1	mRNA	5363773	5365107	5363773	ID=MS.gene98735.t1;Parent=MS.gene98735
chr2.1	exon	5363773	5365107	5363773	ID=MS.gene98735.t1.exon1;Parent=MS.gene98735.t1
chr2.1	CDS	5363773	5365107	5363773	ID=cds.MS.gene98735.t1;Parent=MS.gene98735.t1

Gene Sequence

>MS.gene98735

ATGGAGATAAGTCCTTACAATACTTCAAAGAATACAACGCACTTGAAGAAGTTGAACCATCAAAATAATAGCTATTTTCTTCATGAAGCTTCAACCATAGACATGATGCATACATCATCAAGCAATCATCAAACATCTTCAGATAATTCTAGTGAGACATGTCATCGTGATCAAGATGGTAAATGGTCCTACAAACTTCTCAAAGAGTGTGCAATTGCAATATCTAATAGAGACTCATCAAAAATCCACCATCTTCTTTGGATGTTAAACGAGTTATCTTCACCTTATGGAGATATTGATCAAAAACTAGCTTCATATTTTCTACAAGCTCTATTTTCCAAGGCAACACAATCTGGTCACAAGTGTTACAAAACACTATCTTCAATCGCTTACAAAAACCACTCTTTTGATTCAGCAAGAAAGTTAATACTCAAGTTTCAAGAGGTAAGTCCATGGACAACTTTTGGACACGTAGCATCAAATGGTGCTATTTTAGAAGCTTTAGAAGGAGAGAAAAAACTTCATATAATTGATATTAGCAACACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTGGCAACAAGAAATGATGAAACTCCTCACCTTAAGCTCACAATTGTTGTCACAAATAATAGTTCTAGTGTTGTTGTTATGAAGGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGCTTATGGGAGTACCTTTTGAGTTGAACGTTATTAGTGATTTGAAACATATACGAGAATTAACGAAAGAGAGATTAGGAATTCAAGAAGGTGAAGCAATAGCTTTGAATTGTGTTGGAGCATTGAGAAAAGTTGAAGTTGAAGAAAGAGAAAGTGTGATTCAATTTTTCAAATCACTTAGTCCTAGAGTTGTGACATTTGTTGAGGAAGAAGGTGATTTTTGTAGTGATGACTTTGTTAAATGTTTTGAAGAGTGTCTTAAGTTTTATAGAATTTATTTTGAGATGTTAGAGGAGAGTTTTCAACCAACAAGTAATGAGAGGTTAATGTTGGAAAGGGAGTGTTCAAGAAGCATAATTAGGGTTTTGGCTTGTGATCATGAATTTGATGATGATGAAGATGATGGTGGTGGTGATTATTGTGATAAAAGAGAGAGAGGAAAACAATGGTTTGAAAGGCTTAGGAATGAATTTTCACCTTGTGGATTTAGTGATGATGTTGTGGATGACGTCAAAGCGTTGCTAAAGAGGTATCAAGCTGGTTGGTCACTTGTTGTGCCTCAAGGAGATGATCATATTTCAGGAATGTACCTCACATGGAAGGAGGAGCCAGTTGTTTGGGCATCAACATGGAAACCCTAG

Protein sequence

>MS.gene98735.t1

MEISPYNTSKNTTHLKKLNHQNNSYFLHEASTIDMMHTSSSNHQTSSDNSSETCHRDQDGKWSYKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGHKCYKTLSSIAYKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTIVVTNNSSSVVVMKEVGQRMEKFARLMGVPFELNVISDLKHIRELTKERLGIQEGEAIALNCVGALRKVEVEERESVIQFFKSLSPRVVTFVEEEGDFCSDDFVKCFEECLKFYRIYFEMLEESFQPTSNERLMLERECSRSIIRVLACDHEFDDDEDDGGGDYCDKRERGKQWFERLRNEFSPCGFSDDVVDDVKALLKRYQAGWSLVVPQGDDHISGMYLTWKEEPVVWASTWKP