Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99076.t1 | XP_003605064.2 | 94.6 | 223 | 12 | 0 | 1 | 223 | 64 | 286 | 1.20E-111 | 412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99076.t1 | P54168 | 36.2 | 210 | 106 | 6 | 1 | 207 | 1 | 185 | 3.9e-18 | 93.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99076.t1 | G7JDD3 | 94.6 | 223 | 12 | 0 | 1 | 223 | 64 | 286 | 8.8e-112 | 412.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene99076 | 0.82821 | 1.02E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene99076 | 0.813337 | 2.69E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene99076 | 0.804552 | 2.04E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene99076 | 0.801517 | 8.68E-49 | -1.69E-46 |
| MS.gene051064 | MS.gene99076 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene99076 | 0.847416 | 1.17E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene99076 | -0.815972 | 7.03E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene99076 | -0.829641 | 4.59E-55 | -1.69E-46 |
| MS.gene056087 | MS.gene99076 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene99076 | 0.80304 | 4.21E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene99076 | 0.818183 | 2.24E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene99076 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene99076 | 0.815343 | 9.70E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene99076 | 0.831039 | 2.09E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene99076 | 0.800984 | 1.11E-48 | -1.69E-46 |
| MS.gene060879 | MS.gene99076 | 0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene99076 | -0.859267 | 4.66E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99076.t1 | MTR_4g023480 | 97.309 | 223 | 6 | 0 | 1 | 223 | 64 | 286 | 5.78e-160 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99076.t1 | AT1G17330 | 77.064 | 218 | 50 | 0 | 6 | 223 | 5 | 222 | 3.03e-120 | 341 |
Find 56 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAGCTTCTCATGAAAA+TGG | 0.305518 | 4.1:-74794707 | None:intergenic |
| TTTGAAGATCATCAAAGAAA+TGG | 0.317424 | 4.1:+74793657 | MS.gene99076:CDS |
| GCCAAGATCTGATCTATCTA+AGG | 0.320518 | 4.1:+74794647 | MS.gene99076:CDS |
| ACTGAACGGAGTCCAGAATT+TGG | 0.354191 | 4.1:+74794360 | MS.gene99076:CDS |
| CTCATGATGCGGCACATGTT+TGG | 0.359860 | 4.1:+74793032 | MS.gene99076:CDS |
| TCTTGGACAACACCAAATTC+TGG | 0.364335 | 4.1:-74794372 | None:intergenic |
| CTTGATGCTATTGGTGCTAT+AGG | 0.384019 | 4.1:+74794405 | MS.gene99076:CDS |
| GCTGCACTGCTCCATGATAT+AGG | 0.400352 | 4.1:+74793224 | MS.gene99076:CDS |
| TCCTTAGATAGATCAGATCT+TGG | 0.401064 | 4.1:-74794648 | None:intergenic |
| CTCTCCCTTGCCACCGAGGA+AGG | 0.423845 | 4.1:+74793073 | MS.gene99076:CDS |
| ATAGTTGCTTACCTATATCA+TGG | 0.428518 | 4.1:-74793235 | None:intergenic |
| TTGAAGATCATCAAAGAAAT+GGG | 0.433662 | 4.1:+74793658 | MS.gene99076:CDS |
| AAAGAGGAGGTGACGGGAAA+AGG | 0.434863 | 4.1:+74794333 | MS.gene99076:CDS |
| TCAGATCTTGGCAAAATAGT+AGG | 0.437282 | 4.1:-74794636 | None:intergenic |
| CATCAAGCCTATCAGCATCT+TGG | 0.454662 | 4.1:-74794389 | None:intergenic |
| ATTGCACGTTGCTTCACATT+CGG | 0.458789 | 4.1:+74794585 | MS.gene99076:CDS |
| GGCAAAGGAGGGCGGAGAGA+AGG | 0.460292 | 4.1:+74794940 | MS.gene99076:CDS |
| CTCTTCTGACCCGCATTCCA+TGG | 0.460854 | 4.1:+74793099 | MS.gene99076:CDS |
| GCTGATAGGCTTGATGCTAT+TGG | 0.472702 | 4.1:+74794396 | MS.gene99076:CDS |
| GTGTTGTCCAAGATGCTGAT+AGG | 0.474522 | 4.1:+74794382 | MS.gene99076:CDS |
| TCTTGAGGAAGAGGGAGTTG+AGG | 0.475838 | 4.1:+74793615 | MS.gene99076:CDS |
| TCATCATATCTTTAAGCTTG+AGG | 0.493256 | 4.1:-74794725 | None:intergenic |
| GGAGAGAAGGCACAAGTTCA+CGG | 0.500335 | 4.1:+74794953 | MS.gene99076:CDS |
| ATGATGCGGCACATGTTTGG+AGG | 0.501839 | 4.1:+74793035 | MS.gene99076:CDS |
| CACGTTGCTTCACATTCGGC+GGG | 0.506510 | 4.1:+74794589 | MS.gene99076:CDS |
| TAGGATAGTTACAATTTCCA+TGG | 0.508969 | 4.1:-74793116 | None:intergenic |
| GTCAGAAGAGAGGCCTTCCT+CGG | 0.523559 | 4.1:-74793086 | None:intergenic |
| CATTTCAGGCTGGGCAAAGG+AGG | 0.525095 | 4.1:+74794928 | MS.gene99076:intron |
| TCAAAGAGTTCTACGACGAA+TGG | 0.526682 | 4.1:+74794985 | MS.gene99076:CDS |
| AATAAGAAAGGCTGAGGCGT+TGG | 0.532558 | 4.1:+74792979 | MS.gene99076:CDS |
| AGAGGCCTTCCTCGGTGGCA+AGG | 0.535275 | 4.1:-74793078 | None:intergenic |
| ATTTCAGGCTGGGCAAAGGA+GGG | 0.541101 | 4.1:+74794929 | MS.gene99076:intron |
| TTACAATTTCCATGGAATGC+GGG | 0.542408 | 4.1:-74793108 | None:intergenic |
| GAGGCCTTCCTCGGTGGCAA+GGG | 0.544423 | 4.1:-74793077 | None:intergenic |
| ATCCATTTCAGGCTGGGCAA+AGG | 0.545547 | 4.1:+74794925 | MS.gene99076:intron |
| TGGTTGAGAAAGCGATGAAA+GGG | 0.553284 | 4.1:+74792999 | MS.gene99076:CDS |
| TTGGTTGAGAAAGCGATGAA+AGG | 0.561138 | 4.1:+74792998 | MS.gene99076:CDS |
| CGGTGGCAAGGGAGAGAGCA+AGG | 0.570258 | 4.1:-74793066 | None:intergenic |
| AAGAGAGACGATGGAAAAGA+CGG | 0.574216 | 4.1:+74792952 | None:intergenic |
| TCAGGCTGGGCAAAGGAGGG+CGG | 0.579737 | 4.1:+74794932 | MS.gene99076:intron |
| TGATGCGGCACATGTTTGGA+GGG | 0.590520 | 4.1:+74793036 | MS.gene99076:CDS |
| AAAGACGGACACAATAAGAA+AGG | 0.590777 | 4.1:+74792967 | MS.gene99076:CDS |
| GTTACAATTTCCATGGAATG+CGG | 0.593875 | 4.1:-74793109 | None:intergenic |
| TGCTCTCTCCCTTGCCACCG+AGG | 0.611184 | 4.1:+74793069 | MS.gene99076:CDS |
| TGGAATGCGGGTCAGAAGAG+AGG | 0.617247 | 4.1:-74793096 | None:intergenic |
| GCACGTTGCTTCACATTCGG+CGG | 0.624085 | 4.1:+74794588 | MS.gene99076:CDS |
| CATTCGGCGGGAGTAAGAAG+AGG | 0.625922 | 4.1:+74794601 | MS.gene99076:CDS |
| GAGTTCTACGACGAATGGAA+CGG | 0.628121 | 4.1:+74794990 | MS.gene99076:CDS |
| GGACACAATAAGAAAGGCTG+AGG | 0.631192 | 4.1:+74792973 | MS.gene99076:CDS |
| GAATGACGCTTCTCATGATG+CGG | 0.637516 | 4.1:+74793021 | MS.gene99076:CDS |
| ATTCGGCGGGAGTAAGAAGA+GGG | 0.649996 | 4.1:+74794602 | MS.gene99076:CDS |
| TAAAGATATGATGAAAACCA+AGG | 0.666397 | 4.1:+74794734 | MS.gene99076:CDS |
| AGAAGAGAGGCCTTCCTCGG+TGG | 0.681062 | 4.1:-74793083 | None:intergenic |
| CGGGAAAAGGAACTACTGAA+CGG | 0.693020 | 4.1:+74794346 | MS.gene99076:CDS |
| CAGGTGACTACAAATACCTG+AGG | 0.728521 | 4.1:+74793358 | MS.gene99076:intron |
| GAGAAGGCACAAGTTCACGG+AGG | 0.756037 | 4.1:+74794956 | MS.gene99076:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATAAAGTAATATA+AGG | + | chr4.1:74793759-74793778 | MS.gene99076:intron | 10.0% |
| !! | TAATTTCCAATAAATAAACA+AGG | - | chr4.1:74794270-74794289 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTACTAATTT+AGG | + | chr4.1:74793881-74793900 | MS.gene99076:intron | 15.0% |
| !! | ATTATACAAAAGATATGAGA+AGG | - | chr4.1:74794159-74794178 | None:intergenic | 20.0% |
| !! | ATTTATTAGCAAACTACAAT+TGG | - | chr4.1:74793320-74793339 | None:intergenic | 20.0% |
| !! | TATGAAGGTTAAAAAGATAA+TGG | - | chr4.1:74793164-74793183 | None:intergenic | 20.0% |
| !! | TGAACAAAATGAAAAACAAA+AGG | - | chr4.1:74793518-74793537 | None:intergenic | 20.0% |
| !! | TGATAATATAATCTGTTTCA+TGG | + | chr4.1:74793973-74793992 | MS.gene99076:intron | 20.0% |
| !! | TTATACAAAAGATATGAGAA+GGG | - | chr4.1:74794158-74794177 | None:intergenic | 20.0% |
| !!! | ACTTATCCTTGTTTATTTAT+TGG | + | chr4.1:74794261-74794280 | MS.gene99076:intron | 20.0% |
| !!! | GATAATGGTAATATAGAAAT+AGG | - | chr4.1:74793149-74793168 | None:intergenic | 20.0% |
| !!! | TTATCTTTTTAACCTTCATA+TGG | + | chr4.1:74793164-74793183 | MS.gene99076:intron | 20.0% |
| !!! | TTTTGGGTTAAAATTTGATA+AGG | - | chr4.1:74794785-74794804 | None:intergenic | 20.0% |
| ! | AAAATGGAAAAATGAGAATG+AGG | - | chr4.1:74793193-74793212 | None:intergenic | 25.0% |
| ! | ACATGAAAAAGTAAGAACTT+AGG | - | chr4.1:74793719-74793738 | None:intergenic | 25.0% |
| ! | CTTTAATTAGAGAACAGAAA+AGG | - | chr4.1:74793817-74793836 | None:intergenic | 25.0% |
| ! | GGTCAATAAAATTATAGTAG+AGG | - | chr4.1:74794764-74794783 | None:intergenic | 25.0% |
| ! | GTAATATAGAAATAGGAAGA+AGG | - | chr4.1:74793142-74793161 | None:intergenic | 25.0% |
| ! | TAAAGATATGATGAAAACCA+AGG | + | chr4.1:74794734-74794753 | MS.gene99076:CDS | 25.0% |
| ! | TATCCTATTGCTAGAAAATT+GGG | + | chr4.1:74794445-74794464 | MS.gene99076:intron | 25.0% |
| ! | TATTTATACTTACTAACCTC+AGG | - | chr4.1:74793377-74793396 | None:intergenic | 25.0% |
| ! | TTGAAGATCATCAAAGAAAT+GGG | + | chr4.1:74793658-74793677 | MS.gene99076:CDS | 25.0% |
| ! | TTTGAAGATCATCAAAGAAA+TGG | + | chr4.1:74793657-74793676 | MS.gene99076:CDS | 25.0% |
| !! | AACTGTTGAAAATTTTCTTG+AGG | + | chr4.1:74793600-74793619 | MS.gene99076:CDS | 25.0% |
| !!! | CATTCTCATTTTTCCATTTT+AGG | + | chr4.1:74793193-74793212 | MS.gene99076:intron | 25.0% |
| !!! | TTAATTTTGATGCATGATCT+CGG | + | chr4.1:74793946-74793965 | MS.gene99076:intron | 25.0% |
| AAGAATGCAGCAGATAAATT+TGG | - | chr4.1:74794845-74794864 | None:intergenic | 30.0% | |
| AGGATAAGTTGCAAACAAAA+TGG | - | chr4.1:74794250-74794269 | None:intergenic | 30.0% | |
| AGGTAAGCAACTATAATTGT+AGG | + | chr4.1:74793244-74793263 | MS.gene99076:intron | 30.0% | |
| AGTATTAGCTCATTTGAGAA+GGG | - | chr4.1:74793551-74793570 | None:intergenic | 30.0% | |
| ATAAAAAACCACACACTACA+CGG | - | chr4.1:74793282-74793301 | None:intergenic | 30.0% | |
| ATAGTTGCTTACCTATATCA+TGG | - | chr4.1:74793238-74793257 | None:intergenic | 30.0% | |
| GGAAAAATACATGAACAAAG+AGG | + | chr4.1:74794668-74794687 | MS.gene99076:CDS | 30.0% | |
| GTATAATTCCTTCCAAAAGT+TGG | + | chr4.1:74794172-74794191 | MS.gene99076:intron | 30.0% | |
| GTATCCTATTGCTAGAAAAT+TGG | + | chr4.1:74794444-74794463 | MS.gene99076:intron | 30.0% | |
| GTCATAATTCTGCATTCAAA+GGG | - | chr4.1:74794478-74794497 | None:intergenic | 30.0% | |
| TAGGATAGTTACAATTTCCA+TGG | - | chr4.1:74793119-74793138 | None:intergenic | 30.0% | |
| TATAGAAATAGGAAGAAGGT+AGG | - | chr4.1:74793138-74793157 | None:intergenic | 30.0% | |
| TCATCATATCTTTAAGCTTG+AGG | - | chr4.1:74794728-74794747 | None:intergenic | 30.0% | |
| TGATGTTTCTTCCAATATTC+AGG | + | chr4.1:74794306-74794325 | MS.gene99076:intron | 30.0% | |
| TGATTTAAGCTATCCATTTC+AGG | + | chr4.1:74794914-74794933 | MS.gene99076:intron | 30.0% | |
| TGTCATAATTCTGCATTCAA+AGG | - | chr4.1:74794479-74794498 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGCCTTCAATATT+AGG | + | chr4.1:74794561-74794580 | MS.gene99076:intron | 30.0% |
| ! | GAAAATTTTCTTGAGGAAGA+GGG | + | chr4.1:74793607-74793626 | MS.gene99076:CDS | 30.0% |
| ! | TGAAAATTTTCTTGAGGAAG+AGG | + | chr4.1:74793606-74793625 | MS.gene99076:CDS | 30.0% |
| !! | AGCTAATACTGTGTCATTTA+GGG | + | chr4.1:74793561-74793580 | MS.gene99076:intron | 30.0% |
| !! | ATTCCCAATTTTCTAGCAAT+AGG | - | chr4.1:74794451-74794470 | None:intergenic | 30.0% |
| !! | CCTCTTTAAAACCTGAATAT+TGG | - | chr4.1:74794320-74794339 | None:intergenic | 30.0% |
| !! | TTTACTTTGTTGATAACTGC+AGG | + | chr4.1:74793339-74793358 | MS.gene99076:intron | 30.0% |
| !!! | ATATTCAGGTTTTAAAGAGG+AGG | + | chr4.1:74794320-74794339 | MS.gene99076:intron | 30.0% |
| !!! | CCAATATTCAGGTTTTAAAG+AGG | + | chr4.1:74794317-74794336 | MS.gene99076:intron | 30.0% |
| !!! | TCAACAGTTTTTTCTTCAGA+TGG | - | chr4.1:74793589-74793608 | None:intergenic | 30.0% |
| !!! | TTCACGCTTAGTCTTTTTTT+GGG | - | chr4.1:74794801-74794820 | None:intergenic | 30.0% |
| !!! | TTTCACGCTTAGTCTTTTTT+TGG | - | chr4.1:74794802-74794821 | None:intergenic | 30.0% |
| AAAGACGGACACAATAAGAA+AGG | + | chr4.1:74792967-74792986 | MS.gene99076:CDS | 35.0% | |
| ACAAAAGATATGAGAAGGGT+AGG | - | chr4.1:74794154-74794173 | None:intergenic | 35.0% | |
| CAGTATTAGCTCATTTGAGA+AGG | - | chr4.1:74793552-74793571 | None:intergenic | 35.0% | |
| CATCAAAGAAATGGGTAAGT+TGG | + | chr4.1:74793666-74793685 | MS.gene99076:intron | 35.0% | |
| CGTGCAATTCCTAATATTGA+AGG | - | chr4.1:74794573-74794592 | None:intergenic | 35.0% | |
| GTATTAGCTCATTTGAGAAG+GGG | - | chr4.1:74793550-74793569 | None:intergenic | 35.0% | |
| GTTACAATTTCCATGGAATG+CGG | - | chr4.1:74793112-74793131 | None:intergenic | 35.0% | |
| TAAGAACTTAGGCAAGAAAC+TGG | - | chr4.1:74793708-74793727 | None:intergenic | 35.0% | |
| TAAGTTGCAAACAAAATGGC+AGG | - | chr4.1:74794246-74794265 | None:intergenic | 35.0% | |
| TCAGATCTTGGCAAAATAGT+AGG | - | chr4.1:74794639-74794658 | None:intergenic | 35.0% | |
| TCCTTAGATAGATCAGATCT+TGG | - | chr4.1:74794651-74794670 | None:intergenic | 35.0% | |
| TTACAATTTCCATGGAATGC+GGG | - | chr4.1:74793111-74793130 | None:intergenic | 35.0% | |
| TTTGACATGACTTTCAAAGC+AGG | + | chr4.1:74793911-74793930 | MS.gene99076:intron | 35.0% | |
| ! | ATTATAGTAGAGGTGTACCT+TGG | - | chr4.1:74794754-74794773 | None:intergenic | 35.0% |
| !! | CACGTTTTCATTTGAAGTGT+TGG | - | chr4.1:74794523-74794542 | None:intergenic | 35.0% |
| !! | GAGCTAATACTGTGTCATTT+AGG | + | chr4.1:74793560-74793579 | MS.gene99076:intron | 35.0% |
| AAACAACCAAGCCTTGAAGT+TGG | - | chr4.1:74793482-74793501 | None:intergenic | 40.0% | |
| AAGATATGAGAAGGGTAGGA+AGG | - | chr4.1:74794150-74794169 | None:intergenic | 40.0% | |
| AGAATTATGACAGCTCTTCG+AGG | + | chr4.1:74794487-74794506 | MS.gene99076:intron | 40.0% | |
| AGTACTATCCCTGATGATCA+TGG | + | chr4.1:74794122-74794141 | MS.gene99076:intron | 40.0% | |
| ATTGCACGTTGCTTCACATT+CGG | + | chr4.1:74794585-74794604 | MS.gene99076:CDS | 40.0% | |
| GCCAAGATCTGATCTATCTA+AGG | + | chr4.1:74794647-74794666 | MS.gene99076:CDS | 40.0% | |
| TAAGCTATCCATTTCAGGCT+GGG | + | chr4.1:74794919-74794938 | MS.gene99076:intron | 40.0% | |
| TCAAAGAGTTCTACGACGAA+TGG | + | chr4.1:74794985-74795004 | MS.gene99076:CDS | 40.0% | |
| TCTTGGACAACACCAAATTC+TGG | - | chr4.1:74794375-74794394 | None:intergenic | 40.0% | |
| TGAGGAGCTTCTCATGAAAA+TGG | - | chr4.1:74794710-74794729 | None:intergenic | 40.0% | |
| TGGTTGAGAAAGCGATGAAA+GGG | + | chr4.1:74792999-74793018 | MS.gene99076:CDS | 40.0% | |
| TTAAGCTATCCATTTCAGGC+TGG | + | chr4.1:74794918-74794937 | MS.gene99076:intron | 40.0% | |
| TTGGTTGAGAAAGCGATGAA+AGG | + | chr4.1:74792998-74793017 | MS.gene99076:CDS | 40.0% | |
| ! | AGTGTTGTTAGCCAACTTCA+AGG | + | chr4.1:74793468-74793487 | MS.gene99076:intron | 40.0% |
| ! | ATTTTTGTCCGTGTAGTGTG+TGG | + | chr4.1:74793271-74793290 | MS.gene99076:intron | 40.0% |
| !! | CTTGATGCTATTGGTGCTAT+AGG | + | chr4.1:74794405-74794424 | MS.gene99076:CDS | 40.0% |
| !!! | AGGTTTTAAAGAGGAGGTGA+CGG | + | chr4.1:74794326-74794345 | MS.gene99076:intron | 40.0% |
| AATAAGAAAGGCTGAGGCGT+TGG | + | chr4.1:74792979-74792998 | MS.gene99076:CDS | 45.0% | |
| ACTGAACGGAGTCCAGAATT+TGG | + | chr4.1:74794360-74794379 | MS.gene99076:CDS | 45.0% | |
| AGAATGAGGCGACCATATGA+AGG | - | chr4.1:74793179-74793198 | None:intergenic | 45.0% | |
| AGGAAGGAACCATGATCATC+AGG | - | chr4.1:74794134-74794153 | None:intergenic | 45.0% | |
| CAGGTGACTACAAATACCTG+AGG | + | chr4.1:74793358-74793377 | MS.gene99076:intron | 45.0% | |
| CATCAAGCCTATCAGCATCT+TGG | - | chr4.1:74794392-74794411 | None:intergenic | 45.0% | |
| CGGGAAAAGGAACTACTGAA+CGG | + | chr4.1:74794346-74794365 | MS.gene99076:CDS | 45.0% | |
| GAATGACGCTTCTCATGATG+CGG | + | chr4.1:74793021-74793040 | MS.gene99076:CDS | 45.0% | |
| GAGTTCTACGACGAATGGAA+CGG | + | chr4.1:74794990-74795009 | MS.gene99076:CDS | 45.0% | |
| GCAGCAAGCTCTACCTAAAA+TGG | - | chr4.1:74793209-74793228 | None:intergenic | 45.0% | |
| GCTGATAGGCTTGATGCTAT+TGG | + | chr4.1:74794396-74794415 | MS.gene99076:CDS | 45.0% | |
| GGAAGGAACCATGATCATCA+GGG | - | chr4.1:74794133-74794152 | None:intergenic | 45.0% | |
| GGACACAATAAGAAAGGCTG+AGG | + | chr4.1:74792973-74792992 | MS.gene99076:CDS | 45.0% | |
| GTGTTGTCCAAGATGCTGAT+AGG | + | chr4.1:74794382-74794401 | MS.gene99076:CDS | 45.0% | |
| TGTTAGCCAACTTCAAGGCT+TGG | + | chr4.1:74793473-74793492 | MS.gene99076:intron | 45.0% | |
| ! | TTCAAAGACGCGCCAACTTT+TGG | - | chr4.1:74794187-74794206 | None:intergenic | 45.0% |
| !!! | GGTTTTAAAGAGGAGGTGAC+GGG | + | chr4.1:74794327-74794346 | MS.gene99076:intron | 45.0% |
| ATCCATTTCAGGCTGGGCAA+AGG | + | chr4.1:74794925-74794944 | MS.gene99076:intron | 50.0% | |
| ATGATGCGGCACATGTTTGG+AGG | + | chr4.1:74793035-74793054 | MS.gene99076:CDS | 50.0% | |
| ATTCGGCGGGAGTAAGAAGA+GGG | + | chr4.1:74794602-74794621 | MS.gene99076:CDS | 50.0% | |
| ATTTCAGGCTGGGCAAAGGA+GGG | + | chr4.1:74794929-74794948 | MS.gene99076:intron | 50.0% | |
| CTCATGATGCGGCACATGTT+TGG | + | chr4.1:74793032-74793051 | MS.gene99076:CDS | 50.0% | |
| GCTGCACTGCTCCATGATAT+AGG | + | chr4.1:74793224-74793243 | MS.gene99076:CDS | 50.0% | |
| TCTTGAGGAAGAGGGAGTTG+AGG | + | chr4.1:74793615-74793634 | MS.gene99076:CDS | 50.0% | |
| TGATGCGGCACATGTTTGGA+GGG | + | chr4.1:74793036-74793055 | MS.gene99076:CDS | 50.0% | |
| ! | AAGACGCGCCAACTTTTGGA+AGG | - | chr4.1:74794183-74794202 | None:intergenic | 50.0% |
| ! | GGAGAGAAGGCACAAGTTCA+CGG | + | chr4.1:74794953-74794972 | MS.gene99076:CDS | 50.0% |
| !! | AAAGAGGAGGTGACGGGAAA+AGG | + | chr4.1:74794333-74794352 | MS.gene99076:CDS | 50.0% |
| CACGTTGCTTCACATTCGGC+GGG | + | chr4.1:74794589-74794608 | MS.gene99076:CDS | 55.0% | |
| CATTCGGCGGGAGTAAGAAG+AGG | + | chr4.1:74794601-74794620 | MS.gene99076:CDS | 55.0% | |
| CATTTCAGGCTGGGCAAAGG+AGG | + | chr4.1:74794928-74794947 | MS.gene99076:intron | 55.0% | |
| CTCCTTTGCCCAGCCTGAAA+TGG | - | chr4.1:74794930-74794949 | None:intergenic | 55.0% | |
| CTCTTCTGACCCGCATTCCA+TGG | + | chr4.1:74793099-74793118 | MS.gene99076:CDS | 55.0% | |
| GCACGTTGCTTCACATTCGG+CGG | + | chr4.1:74794588-74794607 | MS.gene99076:CDS | 55.0% | |
| GTCAGAAGAGAGGCCTTCCT+CGG | - | chr4.1:74793089-74793108 | None:intergenic | 55.0% | |
| TGGAATGCGGGTCAGAAGAG+AGG | - | chr4.1:74793099-74793118 | None:intergenic | 55.0% | |
| ! | GAGAAGGCACAAGTTCACGG+AGG | + | chr4.1:74794956-74794975 | MS.gene99076:CDS | 55.0% |
| AGAAGAGAGGCCTTCCTCGG+TGG | - | chr4.1:74793086-74793105 | None:intergenic | 60.0% | |
| AGAGGCCTTCCTCGGTGGCA+AGG | - | chr4.1:74793081-74793100 | None:intergenic | 65.0% | |
| CGGTGGCAAGGGAGAGAGCA+AGG | - | chr4.1:74793069-74793088 | None:intergenic | 65.0% | |
| CTCTCCCTTGCCACCGAGGA+AGG | + | chr4.1:74793073-74793092 | MS.gene99076:CDS | 65.0% | |
| GAGGCCTTCCTCGGTGGCAA+GGG | - | chr4.1:74793080-74793099 | None:intergenic | 65.0% | |
| GGCAAAGGAGGGCGGAGAGA+AGG | + | chr4.1:74794940-74794959 | MS.gene99076:CDS | 65.0% | |
| TCAGGCTGGGCAAAGGAGGG+CGG | + | chr4.1:74794932-74794951 | MS.gene99076:intron | 65.0% | |
| TGCTCTCTCCCTTGCCACCG+AGG | + | chr4.1:74793069-74793088 | MS.gene99076:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 74792962 | 74795022 | 74792962 | ID=MS.gene99076 |
| chr4.1 | mRNA | 74792962 | 74795022 | 74792962 | ID=MS.gene99076.t1;Parent=MS.gene99076 |
| chr4.1 | exon | 74792962 | 74793126 | 74792962 | ID=MS.gene99076.t1.exon1;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74792962 | 74793126 | 74792962 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| chr4.1 | exon | 74793215 | 74793245 | 74793215 | ID=MS.gene99076.t1.exon2;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74793215 | 74793245 | 74793215 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| chr4.1 | exon | 74793361 | 74793379 | 74793361 | ID=MS.gene99076.t1.exon3;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74793361 | 74793379 | 74793361 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| chr4.1 | exon | 74793582 | 74793679 | 74793582 | ID=MS.gene99076.t1.exon4;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74793582 | 74793679 | 74793582 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| chr4.1 | exon | 74794328 | 74794426 | 74794328 | ID=MS.gene99076.t1.exon5;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74794328 | 74794426 | 74794328 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| chr4.1 | exon | 74794583 | 74794755 | 74794583 | ID=MS.gene99076.t1.exon6;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74794583 | 74794755 | 74794583 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| chr4.1 | exon | 74794936 | 74795022 | 74794936 | ID=MS.gene99076.t1.exon7;Parent=MS.gene99076.t1 |
| chr4.1 | CDS | 74794936 | 74795022 | 74794936 | ID=cds.MS.gene99076.t1;Parent=MS.gene99076.t1 |
| Gene Sequence |
| Protein sequence |
