Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99885.t1 | XP_003601044.1 | 91.3 | 415 | 33 | 2 | 1 | 415 | 1 | 412 | 6.00E-205 | 723.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99885.t1 | Q93ZH0 | 69.1 | 369 | 111 | 1 | 25 | 390 | 29 | 397 | 2.9e-147 | 523.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99885.t1 | G7J302 | 91.3 | 415 | 33 | 2 | 1 | 415 | 1 | 412 | 4.3e-205 | 723.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene99885 | 0.841618 | 4.26E-58 | -1.69E-46 |
| MS.gene050707 | MS.gene99885 | 0.823366 | 1.44E-53 | -1.69E-46 |
| MS.gene050710 | MS.gene99885 | 0.836187 | 1.08E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene99885 | -0.810211 | 1.29E-50 | -1.69E-46 |
| MS.gene051914 | MS.gene99885 | 0.82058 | 6.36E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene99885 | 0.827108 | 1.88E-54 | -1.69E-46 |
| MS.gene053108 | MS.gene99885 | 0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene054633 | MS.gene99885 | 0.807653 | 4.55E-50 | -1.69E-46 |
| MS.gene054662 | MS.gene99885 | 0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene054850 | MS.gene99885 | 0.848142 | 7.40E-60 | -1.69E-46 |
| MS.gene054941 | MS.gene99885 | 0.85167 | 7.63E-61 | -1.69E-46 |
| MS.gene05640 | MS.gene99885 | 0.807567 | 4.75E-50 | -1.69E-46 |
| MS.gene05652 | MS.gene99885 | 0.86303 | 3.33E-64 | -1.69E-46 |
| MS.gene057356 | MS.gene99885 | 0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene057669 | MS.gene99885 | 0.865105 | 7.52E-65 | -1.69E-46 |
| MS.gene058128 | MS.gene99885 | 0.847684 | 9.90E-60 | -1.69E-46 |
| MS.gene058853 | MS.gene99885 | 0.849632 | 2.85E-60 | -1.69E-46 |
| MS.gene05926 | MS.gene99885 | 0.842609 | 2.33E-58 | -1.69E-46 |
| MS.gene059616 | MS.gene99885 | 0.858332 | 8.86E-63 | -1.69E-46 |
| MS.gene061089 | MS.gene99885 | 0.802183 | 6.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99885.t1 | MTR_3g072410 | 96.867 | 415 | 10 | 3 | 1 | 415 | 1 | 412 | 0.0 | 788 |
| MS.gene99885.t1 | MTR_4g094730 | 32.353 | 306 | 182 | 13 | 31 | 323 | 40 | 333 | 1.16e-34 | 131 |
| MS.gene99885.t1 | MTR_4g094730 | 32.432 | 296 | 177 | 12 | 31 | 313 | 40 | 325 | 6.40e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99885.t1 | AT1G21880 | 67.609 | 389 | 122 | 2 | 6 | 390 | 9 | 397 | 0.0 | 538 |
| MS.gene99885.t1 | AT1G21880 | 72.876 | 306 | 82 | 1 | 7 | 311 | 10 | 315 | 3.84e-166 | 469 |
| MS.gene99885.t1 | AT1G77630 | 63.953 | 344 | 123 | 1 | 1 | 343 | 1 | 344 | 4.27e-163 | 465 |
| MS.gene99885.t1 | AT2G17120 | 32.119 | 302 | 180 | 11 | 32 | 324 | 34 | 319 | 1.88e-37 | 139 |
Find 111 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAAAGATTCTGCTGATTT+TGG | 0.106349 | 3.2:+65268278 | MS.gene99885:CDS |
| TAGTGAGTACTTTAAGTTTC+GGG | 0.191041 | 3.2:-65268366 | None:intergenic |
| ACTTACGATGGTATTGTTAA+TGG | 0.220792 | 3.2:+65268756 | MS.gene99885:CDS |
| CCTATTAGTGGAATTTCTTC+TGG | 0.250006 | 3.2:+65269632 | MS.gene99885:CDS |
| TGAAGGCACCACAGAGGATT+TGG | 0.255853 | 3.2:-65269585 | None:intergenic |
| AGAAACCAAACCACTGTAAA+TGG | 0.260463 | 3.2:-65267174 | None:intergenic |
| CCAGAAGAAATTCCACTAAT+AGG | 0.262408 | 3.2:-65269632 | None:intergenic |
| ATCCAATGCTCTTGTGTAGA+TGG | 0.340492 | 3.2:+65267083 | MS.gene99885:CDS |
| GTAATAGCATAACTTCCATT+AGG | 0.342017 | 3.2:-65268311 | None:intergenic |
| TCCTCTGTGGTGCCTTCAAC+AGG | 0.356949 | 3.2:+65269590 | MS.gene99885:CDS |
| ACAGGATTTACTCCTGCATT+AGG | 0.364823 | 3.2:+65269608 | MS.gene99885:CDS |
| CTAGTGAGTACTTTAAGTTT+CGG | 0.368919 | 3.2:-65268367 | None:intergenic |
| TGATTCCATTTACAGTGGTT+TGG | 0.374349 | 3.2:+65267169 | MS.gene99885:CDS |
| TTTGGATTGCTTGTCCCTAA+TGG | 0.380603 | 3.2:+65268296 | MS.gene99885:CDS |
| TTGAAAGAGGGAAGAGAGTT+CGG | 0.386940 | 3.2:-65266961 | None:intergenic |
| AATCGCGGGCAACCCATTAT+CGG | 0.388748 | 3.2:-65267297 | None:intergenic |
| AGTTGGTTGAAACGGATTTA+CGG | 0.389519 | 3.2:-65267109 | None:intergenic |
| CAGAAGAAATTCCACTAATA+GGG | 0.397850 | 3.2:-65269631 | None:intergenic |
| ATTCTTGCTATTCCTATTCC+CGG | 0.402081 | 3.2:+65267443 | MS.gene99885:CDS |
| GAAGGCACCACAGAGGATTT+GGG | 0.408599 | 3.2:-65269584 | None:intergenic |
| AAGAGAGTTCGGAGACTTTG+AGG | 0.415021 | 3.2:-65266950 | None:intergenic |
| GTTAATGCTATGGGGACTAC+TGG | 0.422319 | 3.2:+65267404 | MS.gene99885:CDS |
| GTCTTATGTTGTTCAGCCGT+TGG | 0.422705 | 3.2:+65267325 | MS.gene99885:CDS |
| CCAAAATCAGCAGAATCTTT+CGG | 0.426265 | 3.2:-65268278 | None:intergenic |
| TGCTTCTGCCGCATGCTCCT+TGG | 0.430716 | 3.2:+65269655 | MS.gene99885:CDS |
| AAAATGAAATTACCGGGAAT+AGG | 0.438612 | 3.2:-65267455 | None:intergenic |
| TTTGCGGTGAGGAGTGAGAT+TGG | 0.445485 | 3.2:-65266990 | None:intergenic |
| TAATAGCATAACTTCCATTA+GGG | 0.446734 | 3.2:-65268310 | None:intergenic |
| TCCCTTCAGCCTCGATGTCC+AGG | 0.453460 | 3.2:+65268917 | MS.gene99885:CDS |
| AGGATGTGGTGTTCAACGTC+AGG | 0.457861 | 3.2:-65267032 | None:intergenic |
| ATTATCGGAACCATTAAAAC+AGG | 0.460368 | 3.2:-65267282 | None:intergenic |
| GGACATCGAGGCTGAAGGGA+TGG | 0.461392 | 3.2:-65268914 | None:intergenic |
| ATTCATCAAATCAGTAATAG+TGG | 0.464401 | 3.2:-65267381 | None:intergenic |
| TTTCGGAAACTTTGATGCAC+AGG | 0.472926 | 3.2:-65268261 | None:intergenic |
| CTACACAAGAGCATTGGATT+GGG | 0.473341 | 3.2:-65267079 | None:intergenic |
| CACAAGTGTGAGTGTCAAAG+TGG | 0.484069 | 3.2:-65269690 | None:intergenic |
| GTCAGGGTAAGAGATGTCTA+TGG | 0.484187 | 3.2:-65267015 | None:intergenic |
| GACATCGAGGCTGAAGGGAT+GGG | 0.484842 | 3.2:-65268913 | None:intergenic |
| CAAGAAACAGCTAGAGAAGC+TGG | 0.488287 | 3.2:-65268645 | None:intergenic |
| TTGCGGTGAGGAGTGAGATT+GGG | 0.488292 | 3.2:-65266989 | None:intergenic |
| AAATGATTCTGCAGGGTCGC+AGG | 0.490594 | 3.2:+65269457 | MS.gene99885:intron |
| CCTGCATTAGGCCCTATTAG+TGG | 0.495717 | 3.2:+65269620 | MS.gene99885:CDS |
| TTGATGAATGTTAATGCTAT+GGG | 0.496750 | 3.2:+65267395 | MS.gene99885:CDS |
| TGACCAACATCAAGAACATT+CGG | 0.502470 | 3.2:-65267233 | None:intergenic |
| TCTACACAAGAGCATTGGAT+TGG | 0.505313 | 3.2:-65267080 | None:intergenic |
| ATAAACATACGTTGTTGCTA+TGG | 0.512893 | 3.2:-65268781 | None:intergenic |
| TTTGATGAATGTTAATGCTA+TGG | 0.513306 | 3.2:+65267394 | MS.gene99885:CDS |
| TTCCATCTACACAAGAGCAT+TGG | 0.513503 | 3.2:-65267085 | None:intergenic |
| AGAGATGTCTATGGAGTTTG+CGG | 0.514050 | 3.2:-65267006 | None:intergenic |
| ACTGTAGGTGGGGCGATAAG+AGG | 0.525963 | 3.2:-65269488 | None:intergenic |
| GATTGGGTCGATTTGAAAGA+GGG | 0.526360 | 3.2:-65266973 | None:intergenic |
| GGGACTACTGGAATTTCTGC+TGG | 0.527366 | 3.2:+65267416 | MS.gene99885:CDS |
| CTCTCGGAACAACTGTAGGT+GGG | 0.527776 | 3.2:-65269499 | None:intergenic |
| AGATTGGGTCGATTTGAAAG+AGG | 0.531686 | 3.2:-65266974 | None:intergenic |
| GGAAGTTATGCTATTACAGC+AGG | 0.534448 | 3.2:+65268317 | MS.gene99885:CDS |
| TCACTGTTAGACGGAACTGA+TGG | 0.535200 | 3.2:+65269554 | MS.gene99885:CDS |
| GTTTGAATGCTCTTGCTGCT+AGG | 0.538212 | 3.2:+65267351 | MS.gene99885:CDS |
| AAGAACAGCAATCTTATGCT+TGG | 0.538547 | 3.2:+65268684 | MS.gene99885:CDS |
| GATCCGAATGTTCTTGATGT+TGG | 0.538981 | 3.2:+65267230 | MS.gene99885:CDS |
| CTGTGTAGAGAGTGTAACCT+AGG | 0.539235 | 3.2:-65266926 | None:intergenic |
| GCAGGAGTAAATCCTGTTGA+AGG | 0.542272 | 3.2:-65269602 | None:intergenic |
| ACATCGAGGCTGAAGGGATG+GGG | 0.543885 | 3.2:-65268912 | None:intergenic |
| AGTGATGATGGTGACGGGGC+CGG | 0.545632 | 3.2:-65269536 | None:intergenic |
| GTTCCGTCTAACAGTGATGA+TGG | 0.555050 | 3.2:-65269548 | None:intergenic |
| TTAAAACAGGTACAAGGAAG+AGG | 0.556881 | 3.2:-65267269 | None:intergenic |
| GTAGGTGGGGCGATAAGAGG+AGG | 0.559011 | 3.2:-65269485 | None:intergenic |
| CTAACAGTGATGATGGTGAC+GGG | 0.561054 | 3.2:-65269541 | None:intergenic |
| ACCTGGACATCGAGGCTGAA+GGG | 0.562410 | 3.2:-65268918 | None:intergenic |
| GTGAGTGTCAAAGTGGGTAA+TGG | 0.562630 | 3.2:-65269683 | None:intergenic |
| TCTCTCGGAACAACTGTAGG+TGG | 0.562704 | 3.2:-65269500 | None:intergenic |
| GATTCTCTCGGAACAACTGT+AGG | 0.566259 | 3.2:-65269503 | None:intergenic |
| CATGTGTCGGAGGTTGTGCA+TGG | 0.570050 | 3.2:-65266894 | None:intergenic |
| CACTGTGTGCAGTGTAGCTG+TGG | 0.570591 | 3.2:+65268341 | MS.gene99885:CDS |
| GACACATGCAACTCTCTCCT+AGG | 0.572176 | 3.2:+65266909 | MS.gene99885:CDS |
| GAGAGAATCATTATTTGCAC+CGG | 0.587839 | 3.2:+65269517 | MS.gene99885:CDS |
| CCACTAATAGGGCCTAATGC+AGG | 0.590231 | 3.2:-65269620 | None:intergenic |
| ACTGTAAATGGAATCAGCAA+TGG | 0.591769 | 3.2:-65267162 | None:intergenic |
| AGTGAGTACTTTAAGTTTCG+GGG | 0.592486 | 3.2:-65268365 | None:intergenic |
| GACCTGGACATCGAGGCTGA+AGG | 0.592508 | 3.2:-65268919 | None:intergenic |
| CACTGTTAGACGGAACTGAT+GGG | 0.592672 | 3.2:+65269555 | MS.gene99885:CDS |
| ACATAAGACATATAAATCGC+GGG | 0.592677 | 3.2:-65267311 | None:intergenic |
| AACATAAGACATATAAATCG+CGG | 0.593436 | 3.2:-65267312 | None:intergenic |
| GGTGCAAATAATGATTCTCT+CGG | 0.600611 | 3.2:-65269515 | None:intergenic |
| GTAACTTCTTGCACTTACGA+TGG | 0.600696 | 3.2:+65268744 | MS.gene99885:CDS |
| TAGAGAAGCTAACTCTGTAA+CGG | 0.601846 | 3.2:+65267208 | MS.gene99885:CDS |
| TTGTTGTGAAGAGTTTGAAG+AGG | 0.612993 | 3.2:-65266848 | None:intergenic |
| TCTCGGAACAACTGTAGGTG+GGG | 0.613496 | 3.2:-65269498 | None:intergenic |
| TAGGTGGGGCGATAAGAGGA+GGG | 0.615932 | 3.2:-65269484 | None:intergenic |
| TCACCATCATCACTGTTAGA+CGG | 0.618411 | 3.2:+65269545 | MS.gene99885:CDS |
| ATGAAAGTGTGTCAGAAGGA+CGG | 0.622921 | 3.2:-65267139 | None:intergenic |
| GAGAGAGTTGCATGTGTCGG+AGG | 0.625658 | 3.2:-65266904 | None:intergenic |
| TCTAACAGTGATGATGGTGA+CGG | 0.628578 | 3.2:-65269542 | None:intergenic |
| TGGTTTCACCAAGGAGCATG+CGG | 0.631030 | 3.2:-65269663 | None:intergenic |
| TAGGAGAGAGTTGCATGTGT+CGG | 0.631053 | 3.2:-65266907 | None:intergenic |
| ATGGATGAAAGTGTGTCAGA+AGG | 0.633561 | 3.2:-65267143 | None:intergenic |
| ATTGCTGATTCCATTTACAG+TGG | 0.633798 | 3.2:+65267164 | MS.gene99885:CDS |
| GAACCATTAAAACAGGTACA+AGG | 0.642805 | 3.2:-65267275 | None:intergenic |
| GGATGTGGTGTTCAACGTCA+GGG | 0.644081 | 3.2:-65267031 | None:intergenic |
| ACCACCGCTAGTCTGTTGCA+CGG | 0.650410 | 3.2:-65268715 | None:intergenic |
| ACAAGTGTGAGTGTCAAAGT+GGG | 0.665438 | 3.2:-65269689 | None:intergenic |
| AGAGCATTCAAACTATCCAA+CGG | 0.675427 | 3.2:-65267341 | None:intergenic |
| GCGCACTGACCTGGACATCG+AGG | 0.683172 | 3.2:-65268926 | None:intergenic |
| TGTCTATGGAGTTTGCGGTG+AGG | 0.696874 | 3.2:-65267001 | None:intergenic |
| TAACAGTGATGATGGTGACG+GGG | 0.706304 | 3.2:-65269540 | None:intergenic |
| TGATGAATGTTAATGCTATG+GGG | 0.707115 | 3.2:+65267396 | MS.gene99885:CDS |
| ACCGTGCAACAGACTAGCGG+TGG | 0.715686 | 3.2:+65268714 | MS.gene99885:CDS |
| TACAAGGAAGAGGAACAACA+AGG | 0.717929 | 3.2:-65267259 | None:intergenic |
| TCCTGTTGAAGGCACCACAG+AGG | 0.718699 | 3.2:-65269591 | None:intergenic |
| GAGATCACCCAAATCCTCTG+TGG | 0.727132 | 3.2:+65269577 | MS.gene99885:CDS |
| GTTACCGTGCAACAGACTAG+CGG | 0.732052 | 3.2:+65268711 | MS.gene99885:CDS |
| AGTGGGTAATGGTTTCACCA+AGG | 0.735083 | 3.2:-65269672 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTCTATAATTTAATTTA+GGG | + | chr3.2:65267526-65267545 | MS.gene99885:intron | 10.0% |
| !!! | TACTTTCTATAATTTAATTT+AGG | + | chr3.2:65267525-65267544 | MS.gene99885:intron | 10.0% |
| !!! | TTTTTATTTTCTGTAATTTA+GGG | + | chr3.2:65267927-65267946 | MS.gene99885:intron | 10.0% |
| !! | CTTGTATATATGTATATATA+GGG | + | chr3.2:65268955-65268974 | MS.gene99885:intron | 15.0% |
| !!! | CTTTTTATTTTCTGTAATTT+AGG | + | chr3.2:65267926-65267945 | MS.gene99885:intron | 15.0% |
| !! | AAAAACAAACACAATTTGAA+AGG | - | chr3.2:65267894-65267913 | None:intergenic | 20.0% |
| !! | AATATTCTCAATCTCAAAAA+TGG | - | chr3.2:65268579-65268598 | None:intergenic | 20.0% |
| !! | ATAACAGTAGATAAATCATT+CGG | - | chr3.2:65269057-65269076 | None:intergenic | 20.0% |
| !! | ATTTATGTATAAAGAGAGTA+AGG | - | chr3.2:65268424-65268443 | None:intergenic | 20.0% |
| !! | CATCACTTAAATATGAATTA+CGG | - | chr3.2:65269345-65269364 | None:intergenic | 20.0% |
| !! | CCTATATATACATATATACA+AGG | - | chr3.2:65268957-65268976 | None:intergenic | 20.0% |
| !! | CCTTGTATATATGTATATAT+AGG | + | chr3.2:65268954-65268973 | MS.gene99885:intron | 20.0% |
| !! | TTCAAATAAATCAATCCAAA+CGG | - | chr3.2:65267553-65267572 | None:intergenic | 20.0% |
| !!! | AAAATGTTGGTGTTAATTTA+GGG | + | chr3.2:65268488-65268507 | MS.gene99885:intron | 20.0% |
| !!! | ATAAATCTAGATTCTTTTGT+AGG | + | chr3.2:65268438-65268457 | MS.gene99885:intron | 20.0% |
| !!! | ATGAAATGAAACCAATTTTT+TGG | - | chr3.2:65267780-65267799 | None:intergenic | 20.0% |
| !!! | TAAATCTAGATTCTTTTGTA+GGG | + | chr3.2:65268439-65268458 | MS.gene99885:intron | 20.0% |
| !!! | TGAAATGAAACCAATTTTTT+GGG | - | chr3.2:65267779-65267798 | None:intergenic | 20.0% |
| ! | AACATAAGACATATAAATCG+CGG | - | chr3.2:65267315-65267334 | None:intergenic | 25.0% |
| ! | AAGCATGAAAATGAAATTAC+CGG | - | chr3.2:65267465-65267484 | None:intergenic | 25.0% |
| ! | ACACAATTTGAAAGGTTTAA+TGG | - | chr3.2:65267886-65267905 | None:intergenic | 25.0% |
| ! | ATACTTATTGCTATGTTTCA+TGG | - | chr3.2:65269375-65269394 | None:intergenic | 25.0% |
| ! | ATATCTAGTGGTACTTAATT+TGG | - | chr3.2:65269108-65269127 | None:intergenic | 25.0% |
| ! | ATTCATCAAATCAGTAATAG+TGG | - | chr3.2:65267384-65267403 | None:intergenic | 25.0% |
| ! | CATACAAAAATCATGAAGAA+TGG | - | chr3.2:65269233-65269252 | None:intergenic | 25.0% |
| ! | CGTAATTCATATTTAAGTGA+TGG | + | chr3.2:65269343-65269362 | MS.gene99885:intron | 25.0% |
| ! | TAATAGCATAACTTCCATTA+GGG | - | chr3.2:65268313-65268332 | None:intergenic | 25.0% |
| ! | TTGATGAATGTTAATGCTAT+GGG | + | chr3.2:65267395-65267414 | MS.gene99885:CDS | 25.0% |
| ! | TTTGATGAATGTTAATGCTA+TGG | + | chr3.2:65267394-65267413 | MS.gene99885:CDS | 25.0% |
| !! | ATTCATATTTAAGTGATGGA+AGG | + | chr3.2:65269347-65269366 | MS.gene99885:intron | 25.0% |
| !! | CATTTTATCTACTTGAACAT+GGG | + | chr3.2:65269137-65269156 | MS.gene99885:intron | 25.0% |
| !! | TATCCAAATAGTGTCTTATT+CGG | + | chr3.2:65268182-65268201 | MS.gene99885:intron | 25.0% |
| !! | TTTTATGCTAAACGAATCTA+GGG | + | chr3.2:65268520-65268539 | MS.gene99885:intron | 25.0% |
| !! | TTTTTATGCTAAACGAATCT+AGG | + | chr3.2:65268519-65268538 | MS.gene99885:intron | 25.0% |
| !!! | GAAAATGTTGGTGTTAATTT+AGG | + | chr3.2:65268487-65268506 | MS.gene99885:intron | 25.0% |
| !!! | GTATTTTAAATGATTCTGCA+GGG | + | chr3.2:65269450-65269469 | MS.gene99885:intron | 25.0% |
| !!! | TGTATTTTAAATGATTCTGC+AGG | + | chr3.2:65269449-65269468 | MS.gene99885:intron | 25.0% |
| AAAATGAAATTACCGGGAAT+AGG | - | chr3.2:65267458-65267477 | None:intergenic | 30.0% | |
| ACATAAGACATATAAATCGC+GGG | - | chr3.2:65267314-65267333 | None:intergenic | 30.0% | |
| ACTTACGATGGTATTGTTAA+TGG | + | chr3.2:65268756-65268775 | MS.gene99885:CDS | 30.0% | |
| AGCATGAAAATGAAATTACC+GGG | - | chr3.2:65267464-65267483 | None:intergenic | 30.0% | |
| AGGAAAACGTTTGAAAATGT+TGG | + | chr3.2:65268475-65268494 | MS.gene99885:intron | 30.0% | |
| ATAAACATACGTTGTTGCTA+TGG | - | chr3.2:65268784-65268803 | None:intergenic | 30.0% | |
| ATGCTGAATAGAATATCTAG+TGG | - | chr3.2:65269120-65269139 | None:intergenic | 30.0% | |
| ATTATCGGAACCATTAAAAC+AGG | - | chr3.2:65267285-65267304 | None:intergenic | 30.0% | |
| CAGAAGAAATTCCACTAATA+GGG | - | chr3.2:65269634-65269653 | None:intergenic | 30.0% | |
| GGAGTTTATGTATAGCTAAT+AGG | + | chr3.2:65267608-65267627 | MS.gene99885:intron | 30.0% | |
| GTAATAGCATAACTTCCATT+AGG | - | chr3.2:65268314-65268333 | None:intergenic | 30.0% | |
| TAAGTTATCTTGGAAGCTTA+TGG | - | chr3.2:65268037-65268056 | None:intergenic | 30.0% | |
| TGATGAATGTTAATGCTATG+GGG | + | chr3.2:65267396-65267415 | MS.gene99885:CDS | 30.0% | |
| TGTATAAAGAGAGTAAGGTA+TGG | - | chr3.2:65268419-65268438 | None:intergenic | 30.0% | |
| TGTCTACTTACCCAAAAAAT+TGG | + | chr3.2:65267766-65267785 | MS.gene99885:intron | 30.0% | |
| TTGACAATGCAGATATTGTT+AGG | + | chr3.2:65267667-65267686 | MS.gene99885:intron | 30.0% | |
| ! | AAGTTTCATGTGATGTTTTG+TGG | + | chr3.2:65267739-65267758 | MS.gene99885:intron | 30.0% |
| ! | AATATTCTGACTTGTGTATC+TGG | + | chr3.2:65268593-65268612 | MS.gene99885:intron | 30.0% |
| ! | AATTTAATTTAGGGTCCGTT+TGG | + | chr3.2:65267535-65267554 | MS.gene99885:intron | 30.0% |
| ! | ATATTCTGACTTGTGTATCT+GGG | + | chr3.2:65268594-65268613 | MS.gene99885:intron | 30.0% |
| ! | CTAGTGAGTACTTTAAGTTT+CGG | - | chr3.2:65268370-65268389 | None:intergenic | 30.0% |
| ! | GATTTTGTAGTTGGTTGAAA+CGG | - | chr3.2:65267120-65267139 | None:intergenic | 30.0% |
| ! | GCATTTTATCTACTTGAACA+TGG | + | chr3.2:65269136-65269155 | MS.gene99885:intron | 30.0% |
| ! | GGAAAATAGTTTGATTTCGT+CGG | + | chr3.2:65267629-65267648 | MS.gene99885:intron | 30.0% |
| ! | TAGTGAGTACTTTAAGTTTC+GGG | - | chr3.2:65268369-65268388 | None:intergenic | 30.0% |
| !! | GTTTTAATGGTTCCGATAAT+GGG | + | chr3.2:65267285-65267304 | MS.gene99885:CDS | 30.0% |
| !!! | ATTTTGAGGTAGAGTTTTGA+AGG | - | chr3.2:65267059-65267078 | None:intergenic | 30.0% |
| !!! | TGGTTCTATTGTTGATTTTG+AGG | - | chr3.2:65266877-65266896 | None:intergenic | 30.0% |
| !!! | TGTAGGGTCATTTTGTTTTA+AGG | + | chr3.2:65268455-65268474 | MS.gene99885:intron | 30.0% |
| !!! | TGTTTTAATGGTTCCGATAA+TGG | + | chr3.2:65267284-65267303 | MS.gene99885:CDS | 30.0% |
| !!! | TTTTGAGGTAGAGTTTTGAA+GGG | - | chr3.2:65267058-65267077 | None:intergenic | 30.0% |
| AAAGCCATAGTCTTTAACAG+CGG | + | chr3.2:65269284-65269303 | MS.gene99885:intron | 35.0% | |
| AACCTAAACTTTGCAGTTGT+GGG | + | chr3.2:65267713-65267732 | MS.gene99885:intron | 35.0% | |
| AAGAACAGCAATCTTATGCT+TGG | + | chr3.2:65268684-65268703 | MS.gene99885:CDS | 35.0% | |
| ACTGTAAATGGAATCAGCAA+TGG | - | chr3.2:65267165-65267184 | None:intergenic | 35.0% | |
| AGAAACCAAACCACTGTAAA+TGG | - | chr3.2:65267177-65267196 | None:intergenic | 35.0% | |
| AGACCGAATAAGACACTATT+TGG | - | chr3.2:65268188-65268207 | None:intergenic | 35.0% | |
| CCAAAATCAGCAGAATCTTT+CGG | - | chr3.2:65268281-65268300 | None:intergenic | 35.0% | |
| CCAGAAGAAATTCCACTAAT+AGG | - | chr3.2:65269635-65269654 | None:intergenic | 35.0% | |
| CCTATTAGTGGAATTTCTTC+TGG | + | chr3.2:65269632-65269651 | MS.gene99885:CDS | 35.0% | |
| GAACCATTAAAACAGGTACA+AGG | - | chr3.2:65267278-65267297 | None:intergenic | 35.0% | |
| GAGAGAATCATTATTTGCAC+CGG | + | chr3.2:65269517-65269536 | MS.gene99885:CDS | 35.0% | |
| GGTGCAAATAATGATTCTCT+CGG | - | chr3.2:65269518-65269537 | None:intergenic | 35.0% | |
| GTTGTTTGCGTAAGTTATCT+TGG | - | chr3.2:65268047-65268066 | None:intergenic | 35.0% | |
| TAGAGAAGCTAACTCTGTAA+CGG | + | chr3.2:65267208-65267227 | MS.gene99885:CDS | 35.0% | |
| TCAGTTTGACACGTTAACAA+TGG | - | chr3.2:65268556-65268575 | None:intergenic | 35.0% | |
| TGACCAACATCAAGAACATT+CGG | - | chr3.2:65267236-65267255 | None:intergenic | 35.0% | |
| TGATTCCATTTACAGTGGTT+TGG | + | chr3.2:65267169-65267188 | MS.gene99885:CDS | 35.0% | |
| TTAAAACAGGTACAAGGAAG+AGG | - | chr3.2:65267272-65267291 | None:intergenic | 35.0% | |
| TTGTTGTGAAGAGTTTGAAG+AGG | - | chr3.2:65266851-65266870 | None:intergenic | 35.0% | |
| ! | AGAGCATTCAAACTATCCAA+CGG | - | chr3.2:65267344-65267363 | None:intergenic | 35.0% |
| ! | AGTGAGTACTTTAAGTTTCG+GGG | - | chr3.2:65268368-65268387 | None:intergenic | 35.0% |
| ! | AGTTGGTTGAAACGGATTTA+CGG | - | chr3.2:65267112-65267131 | None:intergenic | 35.0% |
| ! | CGAAACTTAAAGTACTCACT+AGG | + | chr3.2:65268368-65268387 | MS.gene99885:intron | 35.0% |
| !! | ATTCTTGCTATTCCTATTCC+CGG | + | chr3.2:65267443-65267462 | MS.gene99885:CDS | 35.0% |
| !! | ATTGCTGATTCCATTTACAG+TGG | + | chr3.2:65267164-65267183 | MS.gene99885:CDS | 35.0% |
| !! | CTTCCTTGTACCTGTTTTAA+TGG | + | chr3.2:65267272-65267291 | MS.gene99885:CDS | 35.0% |
| ACAAGTGTGAGTGTCAAAGT+GGG | - | chr3.2:65269692-65269711 | None:intergenic | 40.0% | |
| ACAGGATTTACTCCTGCATT+AGG | + | chr3.2:65269608-65269627 | MS.gene99885:CDS | 40.0% | |
| AGAGATGTCTATGGAGTTTG+CGG | - | chr3.2:65267009-65267028 | None:intergenic | 40.0% | |
| ATCCAATGCTCTTGTGTAGA+TGG | + | chr3.2:65267083-65267102 | MS.gene99885:CDS | 40.0% | |
| GAACCTAAACTTTGCAGTTG+TGG | + | chr3.2:65267712-65267731 | MS.gene99885:intron | 40.0% | |
| GATCCGAATGTTCTTGATGT+TGG | + | chr3.2:65267230-65267249 | MS.gene99885:CDS | 40.0% | |
| GGAAGTTATGCTATTACAGC+AGG | + | chr3.2:65268317-65268336 | MS.gene99885:CDS | 40.0% | |
| GTAACTTCTTGCACTTACGA+TGG | + | chr3.2:65268744-65268763 | MS.gene99885:CDS | 40.0% | |
| GTTTCCGCTGTTAAAGACTA+TGG | - | chr3.2:65269291-65269310 | None:intergenic | 40.0% | |
| TACAAGGAAGAGGAACAACA+AGG | - | chr3.2:65267262-65267281 | None:intergenic | 40.0% | |
| TACCCACAACTGCAAAGTTT+AGG | - | chr3.2:65267718-65267737 | None:intergenic | 40.0% | |
| TCACCATCATCACTGTTAGA+CGG | + | chr3.2:65269545-65269564 | MS.gene99885:CDS | 40.0% | |
| TCTGCATTGTCAATTGAGCT+AGG | - | chr3.2:65267660-65267679 | None:intergenic | 40.0% | |
| TTGAAAGAGGGAAGAGAGTT+CGG | - | chr3.2:65266964-65266983 | None:intergenic | 40.0% | |
| TTTCGGAAACTTTGATGCAC+AGG | - | chr3.2:65268264-65268283 | None:intergenic | 40.0% | |
| TTTGGATTGCTTGTCCCTAA+TGG | + | chr3.2:65268296-65268315 | MS.gene99885:CDS | 40.0% | |
| ! | ATGAAAGTGTGTCAGAAGGA+CGG | - | chr3.2:65267142-65267161 | None:intergenic | 40.0% |
| ! | ATGGATGAAAGTGTGTCAGA+AGG | - | chr3.2:65267146-65267165 | None:intergenic | 40.0% |
| ! | GCAAACAACTTGTAGCTTGT+AGG | + | chr3.2:65268058-65268077 | MS.gene99885:intron | 40.0% |
| ! | GCAAAGTTTAGGTTCAAACC+CGG | - | chr3.2:65267707-65267726 | None:intergenic | 40.0% |
| ! | TTCCATCTACACAAGAGCAT+TGG | - | chr3.2:65267088-65267107 | None:intergenic | 40.0% |
| !! | AGAAGGACGGATTTTGTAGT+TGG | - | chr3.2:65267129-65267148 | None:intergenic | 40.0% |
| !! | AGATTGGGTCGATTTGAAAG+AGG | - | chr3.2:65266977-65266996 | None:intergenic | 40.0% |
| !! | AGCATTGGATTGGGATTTTG+AGG | - | chr3.2:65267073-65267092 | None:intergenic | 40.0% |
| !! | ATTACGCTTGTGAGAGTGTT+TGG | + | chr3.2:65267586-65267605 | MS.gene99885:intron | 40.0% |
| !! | CTACACAAGAGCATTGGATT+GGG | - | chr3.2:65267082-65267101 | None:intergenic | 40.0% |
| !! | GAACATGGGTTGATTCTGAA+TGG | + | chr3.2:65269151-65269170 | MS.gene99885:intron | 40.0% |
| !! | GATTGGGTCGATTTGAAAGA+GGG | - | chr3.2:65266976-65266995 | None:intergenic | 40.0% |
| !! | TCTAACAGTGATGATGGTGA+CGG | - | chr3.2:65269545-65269564 | None:intergenic | 40.0% |
| !! | TCTACACAAGAGCATTGGAT+TGG | - | chr3.2:65267083-65267102 | None:intergenic | 40.0% |
| !! | TTACGCTTGTGAGAGTGTTT+GGG | + | chr3.2:65267587-65267606 | MS.gene99885:intron | 40.0% |
| !!! | CCGAAAGATTCTGCTGATTT+TGG | + | chr3.2:65268278-65268297 | MS.gene99885:CDS | 40.0% |
| AAGAGAGTTCGGAGACTTTG+AGG | - | chr3.2:65266953-65266972 | None:intergenic | 45.0% | |
| CAAGAAACAGCTAGAGAAGC+TGG | - | chr3.2:65268648-65268667 | None:intergenic | 45.0% | |
| CAATTGACCCAGTTCGCATT+AGG | + | chr3.2:65269079-65269098 | MS.gene99885:intron | 45.0% | |
| CACAAGTGTGAGTGTCAAAG+TGG | - | chr3.2:65269693-65269712 | None:intergenic | 45.0% | |
| CACTGTTAGACGGAACTGAT+GGG | + | chr3.2:65269555-65269574 | MS.gene99885:CDS | 45.0% | |
| CTCATTGCAACAAGTCACAG+AGG | - | chr3.2:65268807-65268826 | None:intergenic | 45.0% | |
| GATTCTCTCGGAACAACTGT+AGG | - | chr3.2:65269506-65269525 | None:intergenic | 45.0% | |
| GCAGGAGTAAATCCTGTTGA+AGG | - | chr3.2:65269605-65269624 | None:intergenic | 45.0% | |
| GTCAGGGTAAGAGATGTCTA+TGG | - | chr3.2:65267018-65267037 | None:intergenic | 45.0% | |
| GTCTTATGTTGTTCAGCCGT+TGG | + | chr3.2:65267325-65267344 | MS.gene99885:CDS | 45.0% | |
| GTGAGTGTCAAAGTGGGTAA+TGG | - | chr3.2:65269686-65269705 | None:intergenic | 45.0% | |
| GTTAATGCTATGGGGACTAC+TGG | + | chr3.2:65267404-65267423 | MS.gene99885:CDS | 45.0% | |
| GTTCCGTCTAACAGTGATGA+TGG | - | chr3.2:65269551-65269570 | None:intergenic | 45.0% | |
| GTTTGAATGCTCTTGCTGCT+AGG | + | chr3.2:65267351-65267370 | MS.gene99885:CDS | 45.0% | |
| TAGGAGAGAGTTGCATGTGT+CGG | - | chr3.2:65266910-65266929 | None:intergenic | 45.0% | |
| TCACTGTTAGACGGAACTGA+TGG | + | chr3.2:65269554-65269573 | MS.gene99885:CDS | 45.0% | |
| TTAGGTTCAAACCCGGATGA+AGG | - | chr3.2:65267700-65267719 | None:intergenic | 45.0% | |
| ! | AGTGGGTAATGGTTTCACCA+AGG | - | chr3.2:65269675-65269694 | None:intergenic | 45.0% |
| ! | CTGTGTAGAGAGTGTAACCT+AGG | - | chr3.2:65266929-65266948 | None:intergenic | 45.0% |
| ! | TAATTTTCTTGCCTCCCTGC+AGG | + | chr3.2:65268885-65268904 | MS.gene99885:intron | 45.0% |
| !! | CTAACAGTGATGATGGTGAC+GGG | - | chr3.2:65269544-65269563 | None:intergenic | 45.0% |
| !! | TAACAGTGATGATGGTGACG+GGG | - | chr3.2:65269543-65269562 | None:intergenic | 45.0% |
| !! | TTAGGTTGAGCACCTTCATC+CGG | + | chr3.2:65267685-65267704 | MS.gene99885:intron | 45.0% |
| !!! | AGAGTTTTGAAGGGAGGATG+TGG | - | chr3.2:65267049-65267068 | None:intergenic | 45.0% |
| !!! | TGAGGTAGAGTTTTGAAGGG+AGG | - | chr3.2:65267055-65267074 | None:intergenic | 45.0% |
| AAATGATTCTGCAGGGTCGC+AGG | + | chr3.2:65269457-65269476 | MS.gene99885:intron | 50.0% | |
| AATCGCGGGCAACCCATTAT+CGG | - | chr3.2:65267300-65267319 | None:intergenic | 50.0% | |
| ACAGCGGAAACTAGAGTGAC+TGG | + | chr3.2:65269300-65269319 | MS.gene99885:intron | 50.0% | |
| AGGATGTGGTGTTCAACGTC+AGG | - | chr3.2:65267035-65267054 | None:intergenic | 50.0% | |
| CAGCGGAAACTAGAGTGACT+GGG | + | chr3.2:65269301-65269320 | MS.gene99885:intron | 50.0% | |
| CCACTAATAGGGCCTAATGC+AGG | - | chr3.2:65269623-65269642 | None:intergenic | 50.0% | |
| CCTGCATTAGGCCCTATTAG+TGG | + | chr3.2:65269620-65269639 | MS.gene99885:CDS | 50.0% | |
| CTCTCGGAACAACTGTAGGT+GGG | - | chr3.2:65269502-65269521 | None:intergenic | 50.0% | |
| GACACATGCAACTCTCTCCT+AGG | + | chr3.2:65266909-65266928 | MS.gene99885:CDS | 50.0% | |
| GAGATCACCCAAATCCTCTG+TGG | + | chr3.2:65269577-65269596 | MS.gene99885:CDS | 50.0% | |
| GGATGTGGTGTTCAACGTCA+GGG | - | chr3.2:65267034-65267053 | None:intergenic | 50.0% | |
| GGGACTACTGGAATTTCTGC+TGG | + | chr3.2:65267416-65267435 | MS.gene99885:CDS | 50.0% | |
| GTTACCGTGCAACAGACTAG+CGG | + | chr3.2:65268711-65268730 | MS.gene99885:CDS | 50.0% | |
| TCTCGGAACAACTGTAGGTG+GGG | - | chr3.2:65269501-65269520 | None:intergenic | 50.0% | |
| TCTCTCGGAACAACTGTAGG+TGG | - | chr3.2:65269503-65269522 | None:intergenic | 50.0% | |
| TGTCTATGGAGTTTGCGGTG+AGG | - | chr3.2:65267004-65267023 | None:intergenic | 50.0% | |
| TTGACCCAGTTCGCATTAGG+TGG | + | chr3.2:65269082-65269101 | MS.gene99885:intron | 50.0% | |
| TTGCGGTGAGGAGTGAGATT+GGG | - | chr3.2:65266992-65267011 | None:intergenic | 50.0% | |
| TTGGCCACCTAATGCGAACT+GGG | - | chr3.2:65269089-65269108 | None:intergenic | 50.0% | |
| TTTGCGGTGAGGAGTGAGAT+TGG | - | chr3.2:65266993-65267012 | None:intergenic | 50.0% | |
| TTTGGCCACCTAATGCGAAC+TGG | - | chr3.2:65269090-65269109 | None:intergenic | 50.0% | |
| ! | TAGGTTGAGCACCTTCATCC+GGG | + | chr3.2:65267686-65267705 | MS.gene99885:intron | 50.0% |
| ! | TGGTTTCACCAAGGAGCATG+CGG | - | chr3.2:65269666-65269685 | None:intergenic | 50.0% |
| !! | GAAGGCACCACAGAGGATTT+GGG | - | chr3.2:65269587-65269606 | None:intergenic | 50.0% |
| !! | TGAAGGCACCACAGAGGATT+TGG | - | chr3.2:65269588-65269607 | None:intergenic | 50.0% |
| ACATCGAGGCTGAAGGGATG+GGG | - | chr3.2:65268915-65268934 | None:intergenic | 55.0% | |
| ACCTGGACATCGAGGCTGAA+GGG | - | chr3.2:65268921-65268940 | None:intergenic | 55.0% | |
| ACTGTAGGTGGGGCGATAAG+AGG | - | chr3.2:65269491-65269510 | None:intergenic | 55.0% | |
| CACTGTGTGCAGTGTAGCTG+TGG | + | chr3.2:65268341-65268360 | MS.gene99885:CDS | 55.0% | |
| CATGTGTCGGAGGTTGTGCA+TGG | - | chr3.2:65266897-65266916 | None:intergenic | 55.0% | |
| GACATCGAGGCTGAAGGGAT+GGG | - | chr3.2:65268916-65268935 | None:intergenic | 55.0% | |
| GAGAGAGTTGCATGTGTCGG+AGG | - | chr3.2:65266907-65266926 | None:intergenic | 55.0% | |
| TAGGTGGGGCGATAAGAGGA+GGG | - | chr3.2:65269487-65269506 | None:intergenic | 55.0% | |
| TCCTCTGTGGTGCCTTCAAC+AGG | + | chr3.2:65269590-65269609 | MS.gene99885:CDS | 55.0% | |
| ! | ACCACCGCTAGTCTGTTGCA+CGG | - | chr3.2:65268718-65268737 | None:intergenic | 55.0% |
| !! | TCCTGTTGAAGGCACCACAG+AGG | - | chr3.2:65269594-65269613 | None:intergenic | 55.0% |
| AAGGGATGGGGTCAACCTGC+AGG | - | chr3.2:65268903-65268922 | None:intergenic | 60.0% | |
| ACCGTGCAACAGACTAGCGG+TGG | + | chr3.2:65268714-65268733 | MS.gene99885:CDS | 60.0% | |
| AGGGATGGGGTCAACCTGCA+GGG | - | chr3.2:65268902-65268921 | None:intergenic | 60.0% | |
| GACCTGGACATCGAGGCTGA+AGG | - | chr3.2:65268922-65268941 | None:intergenic | 60.0% | |
| GGACATCGAGGCTGAAGGGA+TGG | - | chr3.2:65268917-65268936 | None:intergenic | 60.0% | |
| GTAGGTGGGGCGATAAGAGG+AGG | - | chr3.2:65269488-65269507 | None:intergenic | 60.0% | |
| TCCCTTCAGCCTCGATGTCC+AGG | + | chr3.2:65268917-65268936 | MS.gene99885:CDS | 60.0% | |
| TGCTTCTGCCGCATGCTCCT+TGG | + | chr3.2:65269655-65269674 | MS.gene99885:CDS | 60.0% | |
| ! | AAGGTTGCAGCGCACTGACC+TGG | - | chr3.2:65268938-65268957 | None:intergenic | 60.0% |
| !! | AGTGATGATGGTGACGGGGC+CGG | - | chr3.2:65269539-65269558 | None:intergenic | 60.0% |
| GATGGGGTCAACCTGCAGGG+AGG | - | chr3.2:65268899-65268918 | None:intergenic | 65.0% | |
| ! | GCGCACTGACCTGGACATCG+AGG | - | chr3.2:65268929-65268948 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 65266810 | 65269751 | 65266810 | ID=MS.gene99885 |
| chr3.2 | mRNA | 65266810 | 65269751 | 65266810 | ID=MS.gene99885.t1;Parent=MS.gene99885 |
| chr3.2 | exon | 65266810 | 65267464 | 65266810 | ID=MS.gene99885.t1.exon1;Parent=MS.gene99885.t1 |
| chr3.2 | CDS | 65266810 | 65267464 | 65266810 | ID=cds.MS.gene99885.t1;Parent=MS.gene99885.t1 |
| chr3.2 | exon | 65268261 | 65268378 | 65268261 | ID=MS.gene99885.t1.exon2;Parent=MS.gene99885.t1 |
| chr3.2 | CDS | 65268261 | 65268378 | 65268261 | ID=cds.MS.gene99885.t1;Parent=MS.gene99885.t1 |
| chr3.2 | exon | 65268632 | 65268793 | 65268632 | ID=MS.gene99885.t1.exon3;Parent=MS.gene99885.t1 |
| chr3.2 | CDS | 65268632 | 65268793 | 65268632 | ID=cds.MS.gene99885.t1;Parent=MS.gene99885.t1 |
| chr3.2 | exon | 65268907 | 65268938 | 65268907 | ID=MS.gene99885.t1.exon4;Parent=MS.gene99885.t1 |
| chr3.2 | CDS | 65268907 | 65268938 | 65268907 | ID=cds.MS.gene99885.t1;Parent=MS.gene99885.t1 |
| chr3.2 | exon | 65269471 | 65269751 | 65269471 | ID=MS.gene99885.t1.exon5;Parent=MS.gene99885.t1 |
| chr3.2 | CDS | 65269471 | 65269751 | 65269471 | ID=cds.MS.gene99885.t1;Parent=MS.gene99885.t1 |
| Gene Sequence |
| Protein sequence |
