Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000659.01.T01 | XP_013465770.1 | 96.07 | 229 | 6 | 1 | 1 | 229 | 1 | 226 | 7.96E-154 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000659.01.T01 | Q9SL95 | 76.705 | 176 | 39 | 1 | 39 | 212 | 23 | 198 | 5.50E-90 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000659.01.T01 | A0A072VDZ3 | 96.070 | 229 | 6 | 1 | 1 | 229 | 1 | 226 | 3.80e-154 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000659.01 | MsG0280006884.01 | 0.816222 | 6.180552e-52 | 4.353774e-49 |
| MsG0180000659.01 | MsG0280007786.01 | 0.835851 | 1.319096e-56 | 1.633111e-53 |
| MsG0180000659.01 | MsG0380014754.01 | 0.802907 | 4.490044e-49 | 2.225912e-46 |
| MsG0180000659.01 | MsG0380016008.01 | 0.835022 | 2.137133e-56 | 2.580859e-53 |
| MsG0180000659.01 | MsG0380016018.01 | 0.826239 | 3.025275e-54 | 2.821171e-51 |
| MsG0180000659.01 | MsG0380017231.01 | 0.804966 | 1.675623e-49 | 8.758502e-47 |
| MsG0180000659.01 | MsG0480019588.01 | 0.848845 | 4.726842e-60 | 8.790307e-57 |
| MsG0180000659.01 | MsG0480021600.01 | 0.813834 | 2.093886e-51 | 1.382137e-48 |
| MsG0180000659.01 | MsG0580025117.01 | 0.804784 | 1.829239e-49 | 9.516568e-47 |
| MsG0180000659.01 | MsG0580025444.01 | 0.805316 | 1.416026e-49 | 7.468040e-47 |
| MsG0180000659.01 | MsG0580026162.01 | 0.803741 | 3.015815e-49 | 1.527386e-46 |
| MsG0180000659.01 | MsG0580029623.01 | 0.805777 | 1.133205e-49 | 6.047975e-47 |
| MsG0180000659.01 | MsG0580030019.01 | 0.821423 | 4.069990e-53 | 3.309908e-50 |
| MsG0180000659.01 | MsG0680031841.01 | 0.800104 | 1.685419e-48 | 7.781441e-46 |
| MsG0180000659.01 | MsG0780037751.01 | 0.807732 | 4.377558e-50 | 2.457004e-47 |
| MsG0180000659.01 | MsG0780041637.01 | -0.800953 | 1.131623e-48 | 5.338633e-46 |
| MsG0180000659.01 | MsG0880043109.01 | 0.801355 | 9.362640e-49 | 4.461991e-46 |
| MsG0180000659.01 | MsG0880043261.01 | 0.830617 | 2.654830e-55 | 2.811804e-52 |
| MsG0180000659.01 | MsG0880044855.01 | 0.827603 | 1.428130e-54 | 1.385209e-51 |
| MsG0180000659.01 | MsG0880045804.01 | 0.840064 | 1.088752e-57 | 1.533204e-54 |
| MsG0180000659.01 | MsG0880047720.01 | 0.808255 | 3.387752e-50 | 1.927858e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000659.01.T01 | MTR_1g010210 | 96.070 | 229 | 6 | 1 | 1 | 229 | 1 | 226 | 9.64e-158 | 446 |
| MsG0180000659.01.T01 | MTR_3g464210 | 82.174 | 230 | 40 | 1 | 1 | 229 | 1 | 230 | 2.46e-131 | 380 |
| MsG0180000659.01.T01 | MTR_1g010270 | 72.609 | 230 | 55 | 3 | 1 | 229 | 1 | 223 | 1.18e-111 | 328 |
| MsG0180000659.01.T01 | MTR_3g108190 | 76.667 | 180 | 42 | 0 | 38 | 217 | 20 | 199 | 3.14e-88 | 269 |
| MsG0180000659.01.T01 | MTR_4g011600 | 55.294 | 170 | 73 | 2 | 52 | 218 | 37 | 206 | 1.73e-57 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000659.01.T01 | AT2G25680 | 76.705 | 176 | 39 | 1 | 39 | 212 | 23 | 198 | 5.61e-91 | 276 |
| MsG0180000659.01.T01 | AT1G80310 | 52.222 | 180 | 79 | 3 | 52 | 229 | 31 | 205 | 5.03e-43 | 152 |
Find 118 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTCTGCACTGCATCTT+TGG | 0.095650 | 1:+9372676 | None:intergenic |
| CTTCATCACTCCTTTGAATT+TGG | 0.127643 | 1:+9371974 | None:intergenic |
| GTAACTGAAAATTCCCTTTC+AGG | 0.152803 | 1:+9371684 | None:intergenic |
| CAAGTGCTGCTCTTGGATTT+TGG | 0.180546 | 1:-9371330 | MsG0180000659.01.T01:three_prime_UTR |
| GTTGTACATGAAATTAAATT+TGG | 0.217740 | 1:-9371842 | MsG0180000659.01.T01:three_prime_UTR |
| CTCTTTCTTCAAATTTAGTT+TGG | 0.243561 | 1:+9371224 | None:intergenic |
| GGAGTGATTTCATGAGCTTC+TGG | 0.283217 | 1:+9372737 | None:intergenic |
| TCAAAATGGGCTGAAATTAA+TGG | 0.293645 | 1:-9372632 | MsG0180000659.01.T01:CDS |
| CTTCCAAAGTCTAAATCTTT+AGG | 0.296255 | 1:-9372128 | MsG0180000659.01.T01:CDS |
| TGAAATTCACTAAACAAAAT+TGG | 0.301984 | 1:-9371799 | MsG0180000659.01.T01:three_prime_UTR |
| CTTGCTAGGGTTCTACTTCT+AGG | 0.308575 | 1:-9371095 | MsG0180000659.01.T01:three_prime_UTR |
| TGGTGGAAGAAGTGGGGCGG+GGG | 0.310402 | 1:-9371561 | MsG0180000659.01.T01:three_prime_UTR |
| ATCATCACTGGTGTCATATA+TGG | 0.310944 | 1:-9372398 | MsG0180000659.01.T01:CDS |
| AGGTGTGTTACTTTGTTTGC+TGG | 0.313496 | 1:-9371442 | MsG0180000659.01.T01:three_prime_UTR |
| CTAGCAGGACAGTATAAATT+TGG | 0.316271 | 1:-9371581 | MsG0180000659.01.T01:three_prime_UTR |
| GTAGTAGGAACTACTATTTA+TGG | 0.316279 | 1:-9371026 | MsG0180000659.01.T01:three_prime_UTR |
| AGACCTTGGTTTGGTTTAGA+TGG | 0.323003 | 1:-9372101 | MsG0180000659.01.T01:CDS |
| GCCATCCAATTACCATCTTC+CGG | 0.330508 | 1:+9371996 | None:intergenic |
| CGCGGCAGCGATTGACTTCA+TGG | 0.332278 | 1:+9372355 | None:intergenic |
| TATTTGCACTGCTGTTTCAT+TGG | 0.337708 | 1:-9371359 | MsG0180000659.01.T01:three_prime_UTR |
| TTGGTTTGGTTTAGATGGTT+TGG | 0.344318 | 1:-9372096 | MsG0180000659.01.T01:CDS |
| TTTGAATTGAAGGAGGGTTT+TGG | 0.351391 | 1:+9372768 | None:intergenic |
| TGCACTGCTGTTTCATTGGT+TGG | 0.352590 | 1:-9371355 | MsG0180000659.01.T01:three_prime_UTR |
| AGTGTCTGCACTGCATCTTT+GGG | 0.354736 | 1:+9372677 | None:intergenic |
| GTGCTCCGGAAGATGGTAAT+TGG | 0.355701 | 1:-9372001 | MsG0180000659.01.T01:CDS |
| CTAAACCAAACCAAGGTCTT+TGG | 0.362770 | 1:+9372105 | None:intergenic |
| GCCTTATCAGACAAAGATTT+CGG | 0.369692 | 1:-9372332 | MsG0180000659.01.T01:CDS |
| TATAAATTTGGTGGAAGAAG+TGG | 0.372634 | 1:-9371569 | MsG0180000659.01.T01:three_prime_UTR |
| CTAAACCATCATACTCAATA+TGG | 0.375739 | 1:-9372795 | None:intergenic |
| GGTGGCGTGCTCTTTGTTCT+CGG | 0.379921 | 1:-9372275 | MsG0180000659.01.T01:CDS |
| ATTCCCCTCACAACAGATAA+AGG | 0.381862 | 1:+9372215 | None:intergenic |
| GTTGATGAATTTAGTTGGTT+TGG | 0.384401 | 1:-9371640 | MsG0180000659.01.T01:three_prime_UTR |
| TCCTACTACTGCTAACTATA+TGG | 0.386968 | 1:+9371040 | None:intergenic |
| TATTATTGAGAGTAAACATT+AGG | 0.398520 | 1:+9370967 | None:intergenic |
| ATTGACTTCATGGGCTGAAC+AGG | 0.399970 | 1:+9372365 | None:intergenic |
| ACTAAACAAAATTGGAAGAA+AGG | 0.400604 | 1:-9371791 | MsG0180000659.01.T01:three_prime_UTR |
| GGTGGAAGAAGTGGGGCGGG+GGG | 0.402232 | 1:-9371560 | MsG0180000659.01.T01:three_prime_UTR |
| GGATCTGATGTTTGAATTGA+AGG | 0.402916 | 1:+9372758 | None:intergenic |
| ATAAACCACTTTCTACCATA+TGG | 0.403694 | 1:-9371259 | MsG0180000659.01.T01:three_prime_UTR |
| TGAATTTAGTTGGTTTGGTT+TGG | 0.404947 | 1:-9371635 | MsG0180000659.01.T01:three_prime_UTR |
| GTTGGATCAAGTGCTGCTCT+TGG | 0.405444 | 1:-9371337 | MsG0180000659.01.T01:three_prime_UTR |
| TGCAAAATTGGTATTGGGAT+TGG | 0.405472 | 1:-9371517 | MsG0180000659.01.T01:three_prime_UTR |
| TGCAAATGAGTTAGTGTGTA+TGG | 0.409044 | 1:-9371174 | MsG0180000659.01.T01:three_prime_UTR |
| GAATGGTTTGTTGGAGGTGT+TGG | 0.409771 | 1:+9372716 | None:intergenic |
| CTTGTGGCTGAATGGTTTGT+TGG | 0.410139 | 1:+9372707 | None:intergenic |
| CTCTTTGTTCTCGGTATCAC+AGG | 0.413494 | 1:-9372266 | MsG0180000659.01.T01:CDS |
| TGGCCTAAAGATTTAGACTT+TGG | 0.414440 | 1:+9372125 | None:intergenic |
| TTCATTACTTCTATTGAAGA+TGG | 0.415265 | 1:+9371818 | None:intergenic |
| TGTTACTTAAGCTAAGGAAT+TGG | 0.417510 | 1:-9371289 | MsG0180000659.01.T01:three_prime_UTR |
| GTGCCAACTTGTCATGGTGC+TGG | 0.439717 | 1:-9371608 | MsG0180000659.01.T01:three_prime_UTR |
| ATCTTTGGGTTTGAAACTTG+TGG | 0.442751 | 1:+9372691 | None:intergenic |
| TAACTGAAAATTCCCTTTCA+GGG | 0.444301 | 1:+9371685 | None:intergenic |
| AACACACCTAAAATCCCAAC+TGG | 0.446139 | 1:+9371456 | None:intergenic |
| TTGTCATGTGAGGACTTGCT+AGG | 0.447851 | 1:-9371109 | MsG0180000659.01.T01:three_prime_UTR |
| GTTGGGTTGATGAATTTAGT+TGG | 0.455710 | 1:-9371645 | MsG0180000659.01.T01:three_prime_UTR |
| TAGTGGTTGTTGCGGTGCTC+CGG | 0.457719 | 1:-9372015 | MsG0180000659.01.T01:CDS |
| TTGGTGGAAGAAGTGGGGCG+GGG | 0.458452 | 1:-9371562 | MsG0180000659.01.T01:three_prime_UTR |
| GCCGAAATCTTTGTCTGATA+AGG | 0.459735 | 1:+9372331 | None:intergenic |
| TTAGGCCAAAGACCTTGGTT+TGG | 0.469202 | 1:-9372110 | MsG0180000659.01.T01:CDS |
| TTGAACTTGCTATGTGTGCT+AGG | 0.474892 | 1:-9371417 | MsG0180000659.01.T01:three_prime_UTR |
| ATTGTGATTGTTAATGGAGC+TGG | 0.477827 | 1:-9372047 | MsG0180000659.01.T01:CDS |
| ATTCCAGCTGTCATTATCTC+TGG | 0.479556 | 1:+9372305 | None:intergenic |
| CATCAATTTCAGTGACAGTT+GGG | 0.484371 | 1:-9371662 | MsG0180000659.01.T01:three_prime_UTR |
| GTTTGAAACTTGTGGCTGAA+TGG | 0.492699 | 1:+9372699 | None:intergenic |
| AGAGTGAGAGCCAAGACTAT+AGG | 0.494228 | 1:+9372581 | None:intergenic |
| GTGGCTGAATGGTTTGTTGG+AGG | 0.495034 | 1:+9372710 | None:intergenic |
| TTTGGTGGAAGAAGTGGGGC+GGG | 0.496114 | 1:-9371563 | MsG0180000659.01.T01:three_prime_UTR |
| AATGGTGCCATGGGTGATCT+TGG | 0.501937 | 1:-9372614 | MsG0180000659.01.T01:CDS |
| GGTGCTGTGCCAACTTGTCA+TGG | 0.504890 | 1:-9371614 | MsG0180000659.01.T01:three_prime_UTR |
| ACATCAATTTCAGTGACAGT+TGG | 0.505075 | 1:-9371663 | MsG0180000659.01.T01:three_prime_UTR |
| TAGCAAAGAAGATTCATTTG+TGG | 0.510722 | 1:-9371386 | MsG0180000659.01.T01:three_prime_UTR |
| AATCTTTAGGCCAAAGACCT+TGG | 0.514844 | 1:-9372115 | MsG0180000659.01.T01:CDS |
| CATGGTGCTGGTGGACTAGC+AGG | 0.515807 | 1:-9371596 | MsG0180000659.01.T01:three_prime_UTR |
| TTTATGTGTTACTTAAGCTA+AGG | 0.517035 | 1:-9371295 | MsG0180000659.01.T01:three_prime_UTR |
| TGTCATGTGAGGACTTGCTA+GGG | 0.517780 | 1:-9371108 | MsG0180000659.01.T01:three_prime_UTR |
| CCAACTTGTCATGGTGCTGG+TGG | 0.520067 | 1:-9371605 | MsG0180000659.01.T01:three_prime_UTR |
| CTGATGTTTGAATTGAAGGA+GGG | 0.521335 | 1:+9372762 | None:intergenic |
| GATTCCTTTATCTGTTGTGA+GGG | 0.522285 | 1:-9372219 | MsG0180000659.01.T01:CDS |
| ATAAATTTGGTGGAAGAAGT+GGG | 0.527942 | 1:-9371568 | MsG0180000659.01.T01:three_prime_UTR |
| TACATATATACCTATAGTCT+TGG | 0.528025 | 1:-9372591 | MsG0180000659.01.T01:CDS |
| ATTTGGTGGAAGAAGTGGGG+CGG | 0.528659 | 1:-9371564 | MsG0180000659.01.T01:three_prime_UTR |
| TCAATGTGGTGCCAAGGTTG+AGG | 0.535731 | 1:+9372549 | None:intergenic |
| TGGTTCCATATGGTAGAAAG+TGG | 0.540368 | 1:+9371254 | None:intergenic |
| AATTGGATGGCCAAATTCAA+AGG | 0.540465 | 1:-9371984 | MsG0180000659.01.T01:CDS |
| GGCTGAAATTAATGGTGCCA+TGG | 0.548607 | 1:-9372624 | MsG0180000659.01.T01:CDS |
| ACCATATAGTTAGCAGTAGT+AGG | 0.551028 | 1:-9371041 | MsG0180000659.01.T01:three_prime_UTR |
| GCGGCAGCGATTGACTTCAT+GGG | 0.552618 | 1:+9372356 | None:intergenic |
| ATGACAGCTGGAATCTTGAC+TGG | 0.554837 | 1:-9372296 | MsG0180000659.01.T01:CDS |
| GCAGGACAGTATAAATTTGG+TGG | 0.559975 | 1:-9371578 | MsG0180000659.01.T01:three_prime_UTR |
| CAAATTCAAAGGAGTGATGA+AGG | 0.562407 | 1:-9371973 | MsG0180000659.01.T01:CDS |
| TGTTGCGGTGCTCCGGAAGA+TGG | 0.568204 | 1:-9372008 | MsG0180000659.01.T01:CDS |
| TGATTCCTTTATCTGTTGTG+AGG | 0.568857 | 1:-9372220 | MsG0180000659.01.T01:CDS |
| CCACCAGCACCATGACAAGT+TGG | 0.570149 | 1:+9371605 | None:intergenic |
| CTTGGCTCTCACTCTAGCTA+AGG | 0.577324 | 1:-9372573 | MsG0180000659.01.T01:CDS |
| CATGAAGTCAATCGCTGCCG+CGG | 0.579851 | 1:-9372354 | MsG0180000659.01.T01:CDS |
| ATTCCTTTATCTGTTGTGAG+GGG | 0.583159 | 1:-9372218 | MsG0180000659.01.T01:CDS |
| CTAGCTAAGGACCTCAACCT+TGG | 0.586821 | 1:-9372560 | MsG0180000659.01.T01:CDS |
| GGTGTCTACAACATCATCAC+TGG | 0.588180 | 1:-9372410 | MsG0180000659.01.T01:CDS |
| TATCACAGGATTGATGCAGC+TGG | 0.589104 | 1:-9372252 | MsG0180000659.01.T01:CDS |
| TCTGATGTTTGAATTGAAGG+AGG | 0.598428 | 1:+9372761 | None:intergenic |
| AATAAAACAAGCACAAACAA+TGG | 0.599249 | 1:+9372067 | None:intergenic |
| ACAAAGACTATAAAAGCAGA+AGG | 0.601245 | 1:+9371901 | None:intergenic |
| TCCGGAAGATGGTAATTGGA+TGG | 0.604497 | 1:-9371997 | MsG0180000659.01.T01:CDS |
| GTGCCAGAGATAATGACAGC+TGG | 0.605476 | 1:-9372308 | MsG0180000659.01.T01:CDS |
| TGAACTTGCTATGTGTGCTA+GGG | 0.610530 | 1:-9371416 | MsG0180000659.01.T01:three_prime_UTR |
| GATAGCATACATAAGTTACA+TGG | 0.625846 | 1:+9370995 | None:intergenic |
| ATCTTTGTCTGATAAGGCCG+CGG | 0.630622 | 1:+9372337 | None:intergenic |
| ACAGAGTTCAACATTGACAA+TGG | 0.640308 | 1:+9371741 | None:intergenic |
| TAAATTTGGTGGAAGAAGTG+GGG | 0.642447 | 1:-9371567 | MsG0180000659.01.T01:three_prime_UTR |
| GCTGAAATTAATGGTGCCAT+GGG | 0.646415 | 1:-9372623 | MsG0180000659.01.T01:CDS |
| TTCATGGGCTGAACAGGCAT+AGG | 0.650381 | 1:+9372371 | None:intergenic |
| ATTCAAAGGAGTGATGAAGG+TGG | 0.653705 | 1:-9371970 | MsG0180000659.01.T01:CDS |
| TGAAAATCAATGTGGTGCCA+AGG | 0.655634 | 1:+9372543 | None:intergenic |
| ATATGTACCAAGATCACCCA+TGG | 0.656064 | 1:+9372607 | None:intergenic |
| AGGGGAATTCAACTAGCACA+AGG | 0.671542 | 1:-9372200 | MsG0180000659.01.T01:CDS |
| ACAGCTGGAATCTTGACTGG+TGG | 0.686223 | 1:-9372293 | MsG0180000659.01.T01:CDS |
| AAACCATCTAAACCAAACCA+AGG | 0.711313 | 1:+9372098 | None:intergenic |
| TATACCGTTGAAAATCAATG+TGG | 0.718574 | 1:+9372535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTACATGAAATTAAATT+TGG | - | Chr1:9371889-9371908 | MsG0180000659.01.T01:three_prime_UTR | 20.0% |
| !! | TATTATTGAGAGTAAACATT+AGG | + | Chr1:9372767-9372786 | None:intergenic | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | Chr1:9371932-9371951 | MsG0180000659.01.T01:three_prime_UTR | 20.0% |
| !!! | TGTTTTATTGTGATTGTTAA+TGG | - | Chr1:9371678-9371697 | MsG0180000659.01.T01:three_prime_UTR | 20.0% |
| ! | AATAAAACAAGCACAAACAA+TGG | + | Chr1:9371667-9371686 | None:intergenic | 25.0% |
| ! | ACTAAACAAAATTGGAAGAA+AGG | - | Chr1:9371940-9371959 | MsG0180000659.01.T01:exon | 25.0% |
| ! | CTCTTTCTTCAAATTTAGTT+TGG | + | Chr1:9372510-9372529 | None:intergenic | 25.0% |
| ! | TACATATATACCTATAGTCT+TGG | - | Chr1:9371140-9371159 | MsG0180000659.01.T01:three_prime_UTR | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | Chr1:9371916-9371935 | None:intergenic | 25.0% |
| ! | TTTCTTATGTAATTCATGTC+CGG | - | Chr1:9371289-9371308 | MsG0180000659.01.T01:three_prime_UTR | 25.0% |
| !!! | AAATTTAGTTTGGACTTTTC+TGG | + | Chr1:9372500-9372519 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTATTGTCATGTG+AGG | - | Chr1:9372612-9372631 | MsG0180000659.01.T01:CDS | 25.0% |
| !!! | TGGAAGAAAGGTTTTATTAA+AGG | - | Chr1:9371952-9371971 | MsG0180000659.01.T01:exon | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | Chr1:9372436-9372455 | MsG0180000659.01.T01:intron | 25.0% |
| ACAAAGACTATAAAAGCAGA+AGG | + | Chr1:9371833-9371852 | None:intergenic | 30.0% | |
| ATAAACCACTTTCTACCATA+TGG | - | Chr1:9372472-9372491 | MsG0180000659.01.T01:intron | 30.0% | |
| CTTCCAAAGTCTAAATCTTT+AGG | - | Chr1:9371603-9371622 | MsG0180000659.01.T01:three_prime_UTR | 30.0% | |
| GATAGCATACATAAGTTACA+TGG | + | Chr1:9372739-9372758 | None:intergenic | 30.0% | |
| GTAGTAGGAACTACTATTTA+TGG | - | Chr1:9372705-9372724 | MsG0180000659.01.T01:CDS | 30.0% | |
| TAACTGAAAATTCCCTTTCA+GGG | + | Chr1:9372049-9372068 | None:intergenic | 30.0% | |
| TAGCAAAGAAGATTCATTTG+TGG | - | Chr1:9372345-9372364 | MsG0180000659.01.T01:CDS | 30.0% | |
| TATACCGTTGAAAATCAATG+TGG | + | Chr1:9371199-9371218 | None:intergenic | 30.0% | |
| ! | ATAAATTTGGTGGAAGAAGT+GGG | - | Chr1:9372163-9372182 | MsG0180000659.01.T01:CDS | 30.0% |
| ! | GCTTTTATAGTCTTTGTGTT+GGG | - | Chr1:9371836-9371855 | MsG0180000659.01.T01:three_prime_UTR | 30.0% |
| ! | GGTTTTGCAAAATTGGTATT+GGG | - | Chr1:9372209-9372228 | MsG0180000659.01.T01:CDS | 30.0% |
| ! | GTTGATGAATTTAGTTGGTT+TGG | - | Chr1:9372091-9372110 | MsG0180000659.01.T01:CDS | 30.0% |
| ! | TAATTTCAGCCCATTTTGAA+CGG | + | Chr1:9371098-9371117 | None:intergenic | 30.0% |
| ! | TATAAATTTGGTGGAAGAAG+TGG | - | Chr1:9372162-9372181 | MsG0180000659.01.T01:CDS | 30.0% |
| ! | TGCTTTTATAGTCTTTGTGT+TGG | - | Chr1:9371835-9371854 | MsG0180000659.01.T01:three_prime_UTR | 30.0% |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | Chr1:9372442-9372461 | MsG0180000659.01.T01:intron | 30.0% |
| !! | TCAAAATGGGCTGAAATTAA+TGG | - | Chr1:9371099-9371118 | MsG0180000659.01.T01:three_prime_UTR | 30.0% |
| !! | TGAATTTAGTTGGTTTGGTT+TGG | - | Chr1:9372096-9372115 | MsG0180000659.01.T01:CDS | 30.0% |
| !! | TGGTTTTGCAAAATTGGTAT+TGG | - | Chr1:9372208-9372227 | MsG0180000659.01.T01:CDS | 30.0% |
| !!! | ACTTCTTGGTTTTGCAAAAT+TGG | - | Chr1:9372202-9372221 | MsG0180000659.01.T01:CDS | 30.0% |
| !!! | ACTTTGTTTTCCGTTCAAAA+TGG | - | Chr1:9371085-9371104 | MsG0180000659.01.T01:three_prime_UTR | 30.0% |
| !!! | CTTTGTTTTCCGTTCAAAAT+GGG | - | Chr1:9371086-9371105 | MsG0180000659.01.T01:three_prime_UTR | 30.0% |
| AAACCATCTAAACCAAACCA+AGG | + | Chr1:9371636-9371655 | None:intergenic | 35.0% | |
| AATTGGATGGCCAAATTCAA+AGG | - | Chr1:9371747-9371766 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| ACAGAGTTCAACATTGACAA+TGG | + | Chr1:9371993-9372012 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | Chr1:9372068-9372087 | MsG0180000659.01.T01:CDS | 35.0% | |
| ACCATATAGTTAGCAGTAGT+AGG | - | Chr1:9372690-9372709 | MsG0180000659.01.T01:CDS | 35.0% | |
| ATTCCTTTATCTGTTGTGAG+GGG | - | Chr1:9371513-9371532 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| ATTGTGATTGTTAATGGAGC+TGG | - | Chr1:9371684-9371703 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| CAAATTCAAAGGAGTGATGA+AGG | - | Chr1:9371758-9371777 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| CAGAAAAATAGTGGTTGTTG+CGG | - | Chr1:9371708-9371727 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| CATCAATTTCAGTGACAGTT+GGG | - | Chr1:9372069-9372088 | MsG0180000659.01.T01:CDS | 35.0% | |
| CTAGCAGGACAGTATAAATT+TGG | - | Chr1:9372150-9372169 | MsG0180000659.01.T01:CDS | 35.0% | |
| CTGATGTTTGAATTGAAGGA+GGG | + | Chr1:9370972-9370991 | None:intergenic | 35.0% | |
| CTTCATCACTCCTTTGAATT+TGG | + | Chr1:9371760-9371779 | None:intergenic | 35.0% | |
| GATTCCTTTATCTGTTGTGA+GGG | - | Chr1:9371512-9371531 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| GCCTTATCAGACAAAGATTT+CGG | - | Chr1:9371399-9371418 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| GGATCTGATGTTTGAATTGA+AGG | + | Chr1:9370976-9370995 | None:intergenic | 35.0% | |
| GTAACTGAAAATTCCCTTTC+AGG | + | Chr1:9372050-9372069 | None:intergenic | 35.0% | |
| TCCTACTACTGCTAACTATA+TGG | + | Chr1:9372694-9372713 | None:intergenic | 35.0% | |
| TCTGATGTTTGAATTGAAGG+AGG | + | Chr1:9370973-9370992 | None:intergenic | 35.0% | |
| TGATTCCTTTATCTGTTGTG+AGG | - | Chr1:9371511-9371530 | MsG0180000659.01.T01:three_prime_UTR | 35.0% | |
| TGCAAATGAGTTAGTGTGTA+TGG | - | Chr1:9372557-9372576 | MsG0180000659.01.T01:CDS | 35.0% | |
| TGGCCTAAAGATTTAGACTT+TGG | + | Chr1:9371609-9371628 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | Chr1:9372034-9372053 | MsG0180000659.01.T01:CDS | 35.0% |
| ! | ATCTTTGGGTTTGAAACTTG+TGG | + | Chr1:9371043-9371062 | None:intergenic | 35.0% |
| ! | ATTTTGCAGCAATTTCCAGT+TGG | - | Chr1:9372260-9372279 | MsG0180000659.01.T01:CDS | 35.0% |
| ! | CAATTTCCAGTTGGGATTTT+AGG | - | Chr1:9372269-9372288 | MsG0180000659.01.T01:CDS | 35.0% |
| ! | TAAATTTGGTGGAAGAAGTG+GGG | - | Chr1:9372164-9372183 | MsG0180000659.01.T01:CDS | 35.0% |
| ! | TGCAAAATTGGTATTGGGAT+TGG | - | Chr1:9372214-9372233 | MsG0180000659.01.T01:CDS | 35.0% |
| ! | TTTGAATTGAAGGAGGGTTT+TGG | + | Chr1:9370966-9370985 | None:intergenic | 35.0% |
| ! | TTTTGCAGCAATTTCCAGTT+GGG | - | Chr1:9372261-9372280 | MsG0180000659.01.T01:CDS | 35.0% |
| !! | ATCATCACTGGTGTCATATA+TGG | - | Chr1:9371333-9371352 | MsG0180000659.01.T01:three_prime_UTR | 35.0% |
| !! | GTTGGGTTGATGAATTTAGT+TGG | - | Chr1:9372086-9372105 | MsG0180000659.01.T01:CDS | 35.0% |
| !! | TATTTGCACTGCTGTTTCAT+TGG | - | Chr1:9372372-9372391 | MsG0180000659.01.T01:CDS | 35.0% |
| !! | TTGGTTTGGTTTAGATGGTT+TGG | - | Chr1:9371635-9371654 | MsG0180000659.01.T01:three_prime_UTR | 35.0% |
| !!! | TTGGTATTGGGATTGGTTTT+AGG | - | Chr1:9372221-9372240 | MsG0180000659.01.T01:CDS | 35.0% |
| AACACACCTAAAATCCCAAC+TGG | + | Chr1:9372278-9372297 | None:intergenic | 40.0% | |
| AATCTTTAGGCCAAAGACCT+TGG | - | Chr1:9371616-9371635 | MsG0180000659.01.T01:three_prime_UTR | 40.0% | |
| ATATGTACCAAGATCACCCA+TGG | + | Chr1:9371127-9371146 | None:intergenic | 40.0% | |
| ATTCAAAGGAGTGATGAAGG+TGG | - | Chr1:9371761-9371780 | MsG0180000659.01.T01:three_prime_UTR | 40.0% | |
| ATTCATGTCCGGAATCTTTC+AGG | - | Chr1:9371300-9371319 | MsG0180000659.01.T01:three_prime_UTR | 40.0% | |
| ATTCCAGCTGTCATTATCTC+TGG | + | Chr1:9371429-9371448 | None:intergenic | 40.0% | |
| ATTCCCCTCACAACAGATAA+AGG | + | Chr1:9371519-9371538 | None:intergenic | 40.0% | |
| CTAAACCAAACCAAGGTCTT+TGG | + | Chr1:9371629-9371648 | None:intergenic | 40.0% | |
| GCAGGACAGTATAAATTTGG+TGG | - | Chr1:9372153-9372172 | MsG0180000659.01.T01:CDS | 40.0% | |
| GCCGAAATCTTTGTCTGATA+AGG | + | Chr1:9371403-9371422 | None:intergenic | 40.0% | |
| TGGTTCCATATGGTAGAAAG+TGG | + | Chr1:9372480-9372499 | None:intergenic | 40.0% | |
| TGTAGACACCTGAAAGATTC+CGG | + | Chr1:9371311-9371330 | None:intergenic | 40.0% | |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | Chr1:9372033-9372052 | MsG0180000659.01.T01:CDS | 40.0% |
| ! | GTTTGAAACTTGTGGCTGAA+TGG | + | Chr1:9371035-9371054 | None:intergenic | 40.0% |
| ! | TGAAAATCAATGTGGTGCCA+AGG | + | Chr1:9371191-9371210 | None:intergenic | 40.0% |
| !! | AGACCTTGGTTTGGTTTAGA+TGG | - | Chr1:9371630-9371649 | MsG0180000659.01.T01:three_prime_UTR | 40.0% |
| !! | AGGTGTGTTACTTTGTTTGC+TGG | - | Chr1:9372289-9372308 | MsG0180000659.01.T01:CDS | 40.0% |
| !! | CGCAACAACCACTATTTTTC+TGG | + | Chr1:9371710-9371729 | None:intergenic | 40.0% |
| !! | GCTGAAATTAATGGTGCCAT+GGG | - | Chr1:9371108-9371127 | MsG0180000659.01.T01:three_prime_UTR | 40.0% |
| !! | TGAACTTGCTATGTGTGCTA+GGG | - | Chr1:9372315-9372334 | MsG0180000659.01.T01:CDS | 40.0% |
| !! | TTGAACTTGCTATGTGTGCT+AGG | - | Chr1:9372314-9372333 | MsG0180000659.01.T01:CDS | 40.0% |
| !!! | GGCACCACATTGATTTTCAA+CGG | - | Chr1:9371192-9371211 | MsG0180000659.01.T01:three_prime_UTR | 40.0% |
| !!! | TGGACTTTTCTGGTTCCATA+TGG | + | Chr1:9372490-9372509 | None:intergenic | 40.0% |
| AGAGTGAGAGCCAAGACTAT+AGG | + | Chr1:9371153-9371172 | None:intergenic | 45.0% | |
| AGGGGAATTCAACTAGCACA+AGG | - | Chr1:9371531-9371550 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| AGTGTCTGCACTGCATCTTT+GGG | + | Chr1:9371057-9371076 | None:intergenic | 45.0% | |
| ATCTTTGTCTGATAAGGCCG+CGG | + | Chr1:9371397-9371416 | None:intergenic | 45.0% | |
| ATGACAGCTGGAATCTTGAC+TGG | - | Chr1:9371435-9371454 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| CTCTTTGTTCTCGGTATCAC+AGG | - | Chr1:9371465-9371484 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| CTTGCTAGGGTTCTACTTCT+AGG | - | Chr1:9372636-9372655 | MsG0180000659.01.T01:CDS | 45.0% | |
| GCCATCCAATTACCATCTTC+CGG | + | Chr1:9371738-9371757 | None:intergenic | 45.0% | |
| GGAGTGATTTCATGAGCTTC+TGG | + | Chr1:9370997-9371016 | None:intergenic | 45.0% | |
| GGTGTCTACAACATCATCAC+TGG | - | Chr1:9371321-9371340 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| TATCACAGGATTGATGCAGC+TGG | - | Chr1:9371479-9371498 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| TCCGGAAGATGGTAATTGGA+TGG | - | Chr1:9371734-9371753 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| TTAGGCCAAAGACCTTGGTT+TGG | - | Chr1:9371621-9371640 | MsG0180000659.01.T01:three_prime_UTR | 45.0% | |
| ! | ATTGACTTCATGGGCTGAAC+AGG | + | Chr1:9371369-9371388 | None:intergenic | 45.0% |
| ! | CTTGTGGCTGAATGGTTTGT+TGG | + | Chr1:9371027-9371046 | None:intergenic | 45.0% |
| ! | GGCTGAAATTAATGGTGCCA+TGG | - | Chr1:9371107-9371126 | MsG0180000659.01.T01:three_prime_UTR | 45.0% |
| ! | TTGTCATGTGAGGACTTGCT+AGG | - | Chr1:9372622-9372641 | MsG0180000659.01.T01:CDS | 45.0% |
| !! | CAAGTGCTGCTCTTGGATTT+TGG | - | Chr1:9372401-9372420 | MsG0180000659.01.T01:CDS | 45.0% |
| !! | GAATGGTTTGTTGGAGGTGT+TGG | + | Chr1:9371018-9371037 | None:intergenic | 45.0% |
| !! | TGCACTGCTGTTTCATTGGT+TGG | - | Chr1:9372376-9372395 | MsG0180000659.01.T01:CDS | 45.0% |
| !! | TGCTGCTCTTGGATTTTGGT+TGG | - | Chr1:9372405-9372424 | MsG0180000659.01.T01:CDS | 45.0% |
| !! | TGTCATGTGAGGACTTGCTA+GGG | - | Chr1:9372623-9372642 | MsG0180000659.01.T01:CDS | 45.0% |
| ACAGCTGGAATCTTGACTGG+TGG | - | Chr1:9371438-9371457 | MsG0180000659.01.T01:three_prime_UTR | 50.0% | |
| CAGTGTCTGCACTGCATCTT+TGG | + | Chr1:9371058-9371077 | None:intergenic | 50.0% | |
| CTAGCTAAGGACCTCAACCT+TGG | - | Chr1:9371171-9371190 | MsG0180000659.01.T01:three_prime_UTR | 50.0% | |
| GGAGCTGGCCAGAAAAATAG+TGG | - | Chr1:9371699-9371718 | MsG0180000659.01.T01:three_prime_UTR | 50.0% | |
| GTGCCAGAGATAATGACAGC+TGG | - | Chr1:9371423-9371442 | MsG0180000659.01.T01:three_prime_UTR | 50.0% | |
| GTGCTCCGGAAGATGGTAAT+TGG | - | Chr1:9371730-9371749 | MsG0180000659.01.T01:three_prime_UTR | 50.0% | |
| ! | ATTTGGTGGAAGAAGTGGGG+CGG | - | Chr1:9372167-9372186 | MsG0180000659.01.T01:CDS | 50.0% |
| ! | CTTGGCTCTCACTCTAGCTA+AGG | - | Chr1:9371158-9371177 | MsG0180000659.01.T01:three_prime_UTR | 50.0% |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | Chr1:9372394-9372413 | MsG0180000659.01.T01:CDS | 50.0% |
| ! | TCAATGTGGTGCCAAGGTTG+AGG | + | Chr1:9371185-9371204 | None:intergenic | 50.0% |
| ! | TTCATGGGCTGAACAGGCAT+AGG | + | Chr1:9371363-9371382 | None:intergenic | 50.0% |
| !! | AATGGTGCCATGGGTGATCT+TGG | - | Chr1:9371117-9371136 | MsG0180000659.01.T01:three_prime_UTR | 50.0% |
| !! | GTGGCTGAATGGTTTGTTGG+AGG | + | Chr1:9371024-9371043 | None:intergenic | 50.0% |
| CATGAAGTCAATCGCTGCCG+CGG | - | Chr1:9371377-9371396 | MsG0180000659.01.T01:three_prime_UTR | 55.0% | |
| CCACCAGCACCATGACAAGT+TGG | + | Chr1:9372129-9372148 | None:intergenic | 55.0% | |
| GGTGGCGTGCTCTTTGTTCT+CGG | - | Chr1:9371456-9371475 | MsG0180000659.01.T01:three_prime_UTR | 55.0% | |
| GTGCCAACTTGTCATGGTGC+TGG | - | Chr1:9372123-9372142 | MsG0180000659.01.T01:CDS | 55.0% | |
| TAGTGGTTGTTGCGGTGCTC+CGG | - | Chr1:9371716-9371735 | MsG0180000659.01.T01:three_prime_UTR | 55.0% | |
| TTTGGTGGAAGAAGTGGGGC+GGG | - | Chr1:9372168-9372187 | MsG0180000659.01.T01:CDS | 55.0% | |
| ! | CCAACTTGTCATGGTGCTGG+TGG | - | Chr1:9372126-9372145 | MsG0180000659.01.T01:CDS | 55.0% |
| ! | GCGGCAGCGATTGACTTCAT+GGG | + | Chr1:9371378-9371397 | None:intergenic | 55.0% |
| ! | GGTGCTGTGCCAACTTGTCA+TGG | - | Chr1:9372117-9372136 | MsG0180000659.01.T01:CDS | 55.0% |
| TGTTGCGGTGCTCCGGAAGA+TGG | - | Chr1:9371723-9371742 | MsG0180000659.01.T01:three_prime_UTR | 60.0% | |
| TTGGTGGAAGAAGTGGGGCG+GGG | - | Chr1:9372169-9372188 | MsG0180000659.01.T01:CDS | 60.0% | |
| ! | CGCGGCAGCGATTGACTTCA+TGG | + | Chr1:9371379-9371398 | None:intergenic | 60.0% |
| !! | CATGGTGCTGGTGGACTAGC+AGG | - | Chr1:9372135-9372154 | MsG0180000659.01.T01:CDS | 60.0% |
| TGGTGGAAGAAGTGGGGCGG+GGG | - | Chr1:9372170-9372189 | MsG0180000659.01.T01:CDS | 65.0% | |
| ! | GGGGGGTGTGTGGCACTTCT+TGG | - | Chr1:9372188-9372207 | MsG0180000659.01.T01:CDS | 65.0% |
| GGTGGAAGAAGTGGGGCGGG+GGG | - | Chr1:9372171-9372190 | MsG0180000659.01.T01:CDS | 70.0% | |
| ! | GAAGTGGGGCGGGGGGTGTG+TGG | - | Chr1:9372178-9372197 | MsG0180000659.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 9370946 | 9372807 | 9370946 | ID=MsG0180000659.01;Name=MsG0180000659.01 |
| Chr1 | mRNA | 9370946 | 9372807 | 9370946 | ID=MsG0180000659.01.T01;Parent=MsG0180000659.01;Name=MsG0180000659.01.T01;_AED=0.03;_eAED=0.03;_QI=9|1|1|1|1|1|2|1007|245 |
| Chr1 | exon | 9372540 | 9372807 | 9372540 | ID=MsG0180000659.01.T01:exon:1916;Parent=MsG0180000659.01.T01 |
| Chr1 | exon | 9370946 | 9372431 | 9370946 | ID=MsG0180000659.01.T01:exon:1917;Parent=MsG0180000659.01.T01 |
| Chr1 | five_prime_UTR | 9372799 | 9372807 | 9372799 | ID=MsG0180000659.01.T01:five_prime_utr;Parent=MsG0180000659.01.T01 |
| Chr1 | CDS | 9372540 | 9372798 | 9372540 | ID=MsG0180000659.01.T01:cds;Parent=MsG0180000659.01.T01 |
| Chr1 | CDS | 9371953 | 9372431 | 9371953 | ID=MsG0180000659.01.T01:cds;Parent=MsG0180000659.01.T01 |
| Chr1 | three_prime_UTR | 9370946 | 9371952 | 9370946 | ID=MsG0180000659.01.T01:three_prime_utr;Parent=MsG0180000659.01.T01 |
| Gene Sequence |
| Protein sequence |
